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Pregenerated sensors for CNTF (Mus musculus)

Ensembl gene IDs: ENSMUSG00000079415

Ensembl transcript IDs: ENSMUST00000112933.2

Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CAA 90 bp AGAATAACCATGTTTATCTTCTGTTCATACGTGGGTCAACCCTACTaGACGAAATATGCCTGTGGTCTAAGGTTTTCCAAAATTGATGCT +
Preference number: 2 (lower is better)
Translates to: RITMFIFCSYVGQPY*TKYACGLRFSKIDA
Trigger: AGCATCAATTTTGGAAAACCTTAGACCACAGGCATATTTCGTCAAGTAGGGTTGACCCACGTATGAACAGAAGATAAACATGGTTATTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112933.2
CDS-3UTR TCA 90 bp CTAGGCCCCTGGGGAACTACTGATATCCCATTAGATCAAAGAGGGAGACAGAGGCACTGTGAAAGCTCTTaGAGGACCTTCAAGCCCCAC +
Preference number: 4 (lower is better)
Translates to: LGPWGTTDIPLDQRGRQRHCESS*RTFKPH
Trigger: GTGGGGCTTGAAGGTCCTTCAAGAGCTTTCACAGTG...CCTCTGTCTCCCTCTTTGATCTAATGGGATATCAGTAGTTCCCCAGGGGCCTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000112933.2
CDS-3UTR TCA 90 bp GGAACTACTGATATCCCATTAGATCAAAGAGGGAGACAGAGGCAAGAGTTAAGACAGAGGTCCCGGCGGTaGAGGGTCAGAGGTGATTGC +
Preference number: 4 (lower is better)
Translates to: GTTDIPLDQRGRQRQELRQRSRR*RVRGDC
Trigger: GCAATCACCTCTGACCCTTCACCGCCGGGACCTCTG...TCTTAACTCTTGCCTCTGTCTCCCTCTTTGATCTAATGGGATATCAGTAGTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112933.2
CDS-3UTR TCA 90 bp CCCTGGGGAACTACTGATATCCCATTAGATCAAAGAGGGAGACAGAGGCAAGAGCACCATCTCCAATTGTaGCAGGCATCCCATCAGCCT +
Preference number: 4 (lower is better)
Translates to: PWGTTDIPLDQRGRQRQEHHLQL*QASHQP
Trigger: AGGCTGATGGGATGCCTGTCACAATTGGAGATGGTG...CTCTTGCCTCTGTCTCCCTCTTTGATCTAATGGGATATCAGTAGTTCCCCAGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112933.2
CDS-3UTR TCA 90 bp CTAGGCCCCTGGGGAACTACTGATATCCCATTAGATCAAAGAGGGAGACAGAGGATGGCTCTCATGTGCTaGGATTCCCATGTGATGAGA +
Preference number: 4 (lower is better)
Translates to: LGPWGTTDIPLDQRGRQRMALMC*DSHVMR
Trigger: TCTCATCACATGGGAATCTCAGCACATGAGAGCCAT...CCTCTGTCTCCCTCTTTGATCTAATGGGATATCAGTAGTTCCCCAGGGGCCTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112933.2
CDS-3UTR TCA 90 bp CTAGGCCCCTGGGGAACTACTGATATCCCATTAGATCAAAGAGGGAGACAGAGGAGAGTATGTATTGCCTaGTGGAAGTCACCTTCAGTC +
Preference number: 4 (lower is better)
Translates to: LGPWGTTDIPLDQRGRQRRVCIA*WKSPSV
Trigger: GACTGAAGGTGACTTCCATCAGGCAATACATACTCT...CCTCTGTCTCCCTCTTTGATCTAATGGGATATCAGTAGTTCCCCAGGGGCCTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112933.2
CDS-3UTR TCA 90 bp CCCTGGGGAACTACTGATATCCCATTAGATCAAAGAGGGAGACAGAGGCAAGAGCCACTGAGTCAAGGCTaGTATTTTTATTCAGGCCTT +
Preference number: 4 (lower is better)
Translates to: PWGTTDIPLDQRGRQRQEPLSQG*YFYSGL
Trigger: AAGGCCTGAATAAAAATATCAGCCTTGACTCAGTGG...CTCTTGCCTCTGTCTCCCTCTTTGATCTAATGGGATATCAGTAGTTCCCCAGGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112933.2
CDS-3UTR CCA 90 bp CCCTGGGGAACTACTGATATCCCATTAGATCAAAGAGGGAGACAGAGGCAAGAGGTGAAATGCACTCTCTaGTCTTCTAAAAGCTTGGTT +
Preference number: 4 (lower is better)
Translates to: PWGTTDIPLDQRGRQRQEVKCTL*SSKSLV
Trigger: AACCAAGCTTTTAGAAGACCAGAGAGTGCATTTCAC...CTCTTGCCTCTGTCTCCCTCTTTGATCTAATGGGATATCAGTAGTTCCCCAGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112933.2
CDS-3UTR GCA 90 bp ATAACCATGTTTATCTTCTGTTCATACGTGGGTCAACCCTACTTGACGAAATATCTCTTGGAGTCGCTCTaGCTCAGTCATCTCACTCCA +
Preference number: 4 (lower is better)
Translates to: ITMFIFCSYVGQPYLTKYLLESL*LSHLTP
Trigger: TGGAGTGAGATGACTGAGGCAGAGCGACTCCAAGAG...ATATTTCGTCAAGTAGGGTTGACCCACGTATGAACAGAAGATAAACATGGTTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112933.2
CDS-3UTR TCA 90 bp ATAACCATGTTTATCTTCTGTTCATACGTGGGTCAACCCTACTTGACGAAATATCCTCACAGTCCACTGTaGAAGCTCTTGAAGGACCTT +
Preference number: 4 (lower is better)
Translates to: ITMFIFCSYVGQPYLTKYPHSPL*KLLKDL
Trigger: AAGGTCCTTCAAGAGCTTTCACAGTGGACTGTGAGG...ATATTTCGTCAAGTAGGGTTGACCCACGTATGAACAGAAGATAAACATGGTTAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112933.2
CDS-3UTR CCA 90 bp GGAACTACTGATATCCCATTAGATCAAAGAGGGAGACAGAGGCAAGAGTTAAGAGGTCTTCTAAAAGCTTaGTTAACATCCCTTGGAAGG +
Preference number: 4 (lower is better)
Translates to: GTTDIPLDQRGRQRQELRGLLKA*LTSLGR
Trigger: CCTTCCAAGGGATGTTAACCAAGCTTTTAGAAGACC...TCTTAACTCTTGCCTCTGTCTCCCTCTTTGATCTAATGGGATATCAGTAGTTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112933.2
CDS-3UTR GCA 90 bp AGAATAACCATGTTTATCTTCTGTTCATACGTGGGTCAACCCTACTTGACGAAACGTAAGAGTATGTATTaGCTGATGGAAGTCACCTTC +
Preference number: 4 (lower is better)
Translates to: RITMFIFCSYVGQPYLTKRKSMY*LMEVTF
Trigger: GAAGGTGACTTCCATCAGGCAATACATACTCTTACG...TTTCGTCAAGTAGGGTTGACCCACGTATGAACAGAAGATAAACATGGTTATTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112933.2
CDS GCA 90 bp CCCTTGGAAGGTACGGTAAGCCTGGAGGTTCTCTTGGAGTCGCTCTaGCTCAGTCATCTCACTCCAGCGATCAGTGCTTGCCACTGGTAC +
Preference number: 5 (lower is better)
Translates to: PLEGTVSLEVLLESL*LSHLTPAISACHWY
Trigger: GTACCAGTGGCAAGCACTGATCGCTGGAGTGAGATGACTGAGGCAGAGCGACTCCAAGAGAACCTCCAGGCTTACCGTACCTTCCAAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112933.2
CDS TCA 90 bp ACACGGAGGTCATGGATAGACCTCACAGTCCACTGTGAAAGCTCTTaGAGGACCTTCAAGCCCCACAGCTTCTTCTCAAAGAGGCCACCA +
Preference number: 5 (lower is better)
Translates to: TRRSWIDLTVHCESS*RTFKPHSFFSKRPP
Trigger: TGGTGGCCTCTTTGAGAAGAAGCTGTGGGGCTTGAAGGTCCTTCAAGAGCTTTCACAGTGGACTGTGAGGTCTATCCATGACCTCCGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112933.2
CDS TCA 90 bp TCAAGCCCCACAGCTTCTTCTCAAAGAGGCCACCATCTCCAATTGTaGCAGGCATCCCATCAGCCTCTTTTTCAGGGACCTTCTGTTCCA +
Preference number: 5 (lower is better)
Translates to: SSPTASSQRGHHLQL*QASHQPLFQGPSVP
Trigger: TGGAACAGAAGGTCCCTGAAAAAGAGGCTGATGGGATGCCTGTCACAATTGGAGATGGTGGCCTCTTTGAGAAGAAGCTGTGGGGCTTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112933.2
CDS-3UTR CAA 90 bp CTAGGCCCCTGGGGAACTACTGATATCCCATTAGATCAAAGAGGGAGACAGAGGGGCGAAGGCAGAAACTaGGAGCGTAAGAGTATGTAT +
Preference number: 5 (lower is better)
Translates to: LGPWGTTDIPLDQRGRQRGEGRN*ERKSMY
Trigger: ATACATACTCTTACGCTCCAAGTTTCTGCCTTCGCC...CCTCTGTCTCCCTCTTTGATCTAATGGGATATCAGTAGTTCCCCAGGGGCCTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000112933.2
CDS TCA 90 bp AGAAGAAATGACACGGAGGTCATGGATAGACCTCACAGTCCACTGTaGAAGCTCTTGAAGGACCTTCAAGCCCCACAGCTTCTTCTCAAA +
Preference number: 5 (lower is better)
Translates to: RRNDTEVMDRPHSPL*KLLKDLQAPQLLLK
Trigger: TTTGAGAAGAAGCTGTGGGGCTTGAAGGTCCTTCAAGAGCTTTCACAGTGGACTGTGAGGTCTATCCATGACCTCCGTGTCATTTCTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112933.2
CDS-3UTR CAA 90 bp AGAATAACCATGTTTATCTTCTGTTCATACGTGGGTCAACCCTACTTGACGAAAAGCCTGGAGGTTCTCTaGGAGTCGCTCTGCCTCAGT +
Preference number: 5 (lower is better)
Translates to: RITMFIFCSYVGQPYLTKSLEVL*ESLCLS
Trigger: ACTGAGGCAGAGCGACTCCAAGAGAACCTCCAGGCT...TTTCGTCAAGTAGGGTTGACCCACGTATGAACAGAAGATAAACATGGTTATTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112933.2
CDS-3UTR CAA 90 bp GGAACTACTGATATCCCATTAGATCAAAGAGGGAGACAGAGGCAAGAGTTAAGATGGTCTTCTAAAAGCTaGGTTAACATCCCTTGGAAG +
Preference number: 5 (lower is better)
Translates to: GTTDIPLDQRGRQRQELRWSSKS*VNIPWK
Trigger: CTTCCAAGGGATGTTAACCAAGCTTTTAGAAGACCA...TCTTAACTCTTGCCTCTGTCTCCCTCTTTGATCTAATGGGATATCAGTAGTTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112933.2
CDS GCA 72 bp GTCGCTCTGCCTCAGTCATCTCACTCCAGCGATCAGTaGTTGCCACTGGTACACCATCCACTGAGTCAAGGC +
Preference number: 6 (lower is better)
Translates to: VALPQSSHSSDQ*LPLVHHPLSQG
Trigger: GCCTTGACTCAGTGGATGGTGTACCAGTGGCAAGCACTGATCGCTGGAGTGAGATGACTGAGGCAGAGCGAC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112933.2
CDS GCA 72 bp GGTACGGTAAGCCTGGAGGTTCTCTTGGAGTCGCTCTaGCTCAGTCATCTCACTCCAGCGATCAGTGCTTGC +
Preference number: 6 (lower is better)
Translates to: GTVSLEVLLESL*LSHLTPAISAC
Trigger: GCAAGCACTGATCGCTGGAGTGAGATGACTGAGGCAGAGCGACTCCAAGAGAACCTCCAGGCTTACCGTACC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112933.2
CDS CAA 72 bp CATCCCTTGGAAGGTACGGTAAGCCTGGAGGTTCTCTaGGAGTCGCTCTGCCTCAGTCATCTCACTCCAGCG +
Preference number: 6 (lower is better)
Translates to: HPLEGTVSLEVL*ESLCLSHLTPA
Trigger: CGCTGGAGTGAGATGACTGAGGCAGAGCGACTCCAAGAGAACCTCCAGGCTTACCGTACCTTCCAAGGGATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112933.2
CDS TCA 72 bp GACACGGAGGTCATGGATAGACCTCACAGTCCACTGTaGAAGCTCTTGAAGGACCTTCAAGCCCCACAGCTT +
Preference number: 6 (lower is better)
Translates to: DTEVMDRPHSPL*KLLKDLQAPQL
Trigger: AAGCTGTGGGGCTTGAAGGTCCTTCAAGAGCTTTCACAGTGGACTGTGAGGTCTATCCATGACCTCCGTGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112933.2
CDS TCA 72 bp ACAGCTTCTTCTCAAAGAGGCCACCATCTCCAATTGTaGCAGGCATCCCATCAGCCTCTTTTTCAGGGACCT +
Preference number: 6 (lower is better)
Translates to: TASSQRGHHLQL*QASHQPLFQGP
Trigger: AGGTCCCTGAAAAAGAGGCTGATGGGATGCCTGTCACAATTGGAGATGGTGGCCTCTTTGAGAAGAAGCTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112933.2
CDS TCA 72 bp CCAGCGATCAGTGCTTGCCACTGGTACACCATCCACTaGGTCAAGGCTGATATTTTTATTCAGGCCTTGATG +
Preference number: 6 (lower is better)
Translates to: PAISACHWYTIH*VKADIFIQALM
Trigger: CATCAAGGCCTGAATAAAAATATCAGCCTTGACTCAGTGGATGGTGTACCAGTGGCAAGCACTGATCGCTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112933.2
CDS TCA 72 bp TCATGGATAGACCTCACAGTCCACTGTGAAAGCTCTTaGAGGACCTTCAAGCCCCACAGCTTCTTCTCAAAG +
Preference number: 6 (lower is better)
Translates to: SWIDLTVHCESS*RTFKPHSFFSK
Trigger: CTTTGAGAAGAAGCTGTGGGGCTTGAAGGTCCTTCAAGAGCTTTCACAGTGGACTGTGAGGTCTATCCATGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112933.2
CDS TCA 72 bp AAGGCAGAAACTTGGAGCGTAAGAGTATGTATTGCCTaGTGGAAGTCACCTTCAGTCGGGGTGAAATGCACT +
Preference number: 6 (lower is better)
Translates to: KAETWSVRVCIA*WKSPSVGVKCT
Trigger: AGTGCATTTCACCCCGACTGAAGGTGACTTCCATCAGGCAATACATACTCTTACGCTCCAAGTTTCTGCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112933.2
CDS TCA 72 bp TATGTATTGCCTGATGGAAGTCACCTTCAGTCGGGGTaGAATGCACTCTCTGGTCTTCTAAAAGCTTGGTTA +
Preference number: 6 (lower is better)
Translates to: YVLPDGSHLQSG*NALSGLLKAWL
Trigger: TAACCAAGCTTTTAGAAGACCAGAGAGTGCATTTCACCCCGACTGAAGGTGACTTCCATCAGGCAATACATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112933.2