Pregenerated sensors for CNRIP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000044629Ensembl transcript IDs: ENSMUST00000058159.6, ENSMUST00000131515.2
Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCACCTTTATGTTTGTTTAAAGTCTATGGTAGCTTGCCAAAGGGATaGGCCACAGGTCCAATTCCACAACAATGTCTTTTCCCTATTTCT | + |
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Preference number: 1 (lower is better) Translates to: PPLCLFKVYGSLPKG*ATGPIPQQCLFPIS Trigger: AGAAATAGGGAAAAGACATTGTTGTGGAATTGGACCTGTGGCTCATCCCTTTGGCAAGCTACCATAGACTTTAAACAAACATAAAGGTGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| 3UTR TCA 90 bp | TTGGATGCTCACACACATTGCATGCTACATGTTACAAGTCACACATaGGGGACTCCAGCACATTGTTATCTTAATTTAACAATGAACACA | + |
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Preference number: 1 (lower is better) Translates to: LDAHTHCMLHVTSHT*GTPAHCYLNLTMNT Trigger: TGTGTTCATTGTTAAATTAAGATAACAATGTGCTGGAGTCCCTCATGTGTGACTTGTAACATGTAGCATGCAATGTGTGTGAGCATCCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| 3UTR-3UTR CCA 90 bp | CTGAGCTCCTGTCACACTGGCAGACAGGATAGATGCAGGAACACCAGCATACAAGGGGTAGGAGGTCATTaGGAAACAGCCATGGTGTGG | + |
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Preference number: 2 (lower is better) Translates to: LSSCHTGRQDRCRNTSIQGVGGH*ETAMVW Trigger: CCACACCATGGCTGTTTCCCAATGACCTCCTACCCC...TTGTATGCTGGTGTTCCTGCATCTATCCTGTCTGCCAGTGTGACAGGAGCTCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| 3UTR-3UTR CCA 90 bp | GTGGAACTTTGGTGTAGGACAAACCTGCTACTTCCACTGAGCTCCTGTCACACTGAAACAGCCATGGTGTaGTGTGCCTTGGTTAAGGCT | + |
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Preference number: 2 (lower is better) Translates to: VELWCRTNLLLPLSSCHTETAMV*CALVKA Trigger: AGCCTTAACCAAGGCACACCACACCATGGCTGTTTC...AGTGTGACAGGAGCTCAGTGGAAGTAGCAGGTTTGTCCTACACCAAAGTTCCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| 3UTR-3UTR CCA 90 bp | CTGAGCTCCTGTCACACTGGCAGACAGGATAGATGCAGGAACACCAGCATACAATTACATGTGATGTCATaGGTACTGCATCAGAGGGGA | + |
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Preference number: 2 (lower is better) Translates to: LSSCHTGRQDRCRNTSIQLHVMS*VLHQRG Trigger: TCCCCTCTGATGCAGTACCCATGACATCACATGTAA...TTGTATGCTGGTGTTCCTGCATCTATCCTGTCTGCCAGTGTGACAGGAGCTCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| 3UTR-3UTR CCA 90 bp | GAGGGGAGTCACACTTTCACAGTAACTGGGGGTAGGAGGTCATTGGGAAACAGCCTAAAGGTCAGTTTCTaGAGATTGTCTTGCAACATC | + |
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Preference number: 2 (lower is better) Translates to: EGSHTFTVTGGRRSLGNSLKVSF*RLSCNI Trigger: GATGTTGCAAGACAATCTCCAGAAACTGACCTTTAG...GCTGTTTCCCAATGACCTCCTACCCCCAGTTACTGTGAAAGTGTGACTCCCCTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| 3UTR CAA 90 bp | GAAACAGCCATGGTGTGGTGTGCCTTGGTTAAGGCTTGTGCTGGTTaGTCTAAAGGTCAGTTTCTGGAGATTGTCTTGCAACATCAGAAG | + |
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Preference number: 2 (lower is better) Translates to: ETAMVWCALVKACAG*SKGQFLEIVLQHQK Trigger: CTTCTGATGTTGCAAGACAATCTCCAGAAACTGACCTTTAGACAAACCAGCACAAGCCTTAACCAAGGCACACCACACCATGGCTGTTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| 3UTR-3UTR GCA 90 bp | GAATGTGACATTACATGTGATGTCATGGGTACTGCATCAGAGGGGAGTCACACTTTCTGGAGATTGTCTTaGAACATCAGAAGGAATCAT | + |
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Preference number: 2 (lower is better) Translates to: ECDITCDVMGTASEGSHTFWRLS*NIRRNH Trigger: ATGATTCCTTCTGATGTTGCAAGACAATCTCCAGAA...AGTGTGACTCCCCTCTGATGCAGTACCCATGACATCACATGTAATGTCACATTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| 3UTR-3UTR CCA 90 bp | TCAAAAGTTGATTACCATTCCATACACGGTTGTACAAAGTTCAAGTTAAAGGGTAGGAAGCACAACATTTaGGTCCCATTTACTGCAGAC | + |
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Preference number: 2 (lower is better) Translates to: SKVDYHSIHGCTKFKLKGRKHNI*VPFTAD Trigger: GTCTGCAGTAAATGGGACCCAAATGTTGTGCTTCCT...ACCCTTTAACTTGAACTTTGTACAACCGTGTATGGAATGGTAATCAACTTTTGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| 3UTR TCA 72 bp | TGGAACTTTGGTGTAGGACAAACCTGCTACTTCCACTaGGCTCCTGTCACACTGGCAGACAGGATAGATGCA | + |
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Preference number: 3 (lower is better) Translates to: WNFGVGQTCYFH*APVTLADRIDA Trigger: TGCATCTATCCTGTCTGCCAGTGTGACAGGAGCTCAGTGGAAGTAGCAGGTTTGTCCTACACCAAAGTTCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| 3UTR CCA 72 bp | TTGAAAACAAAACACCACGGTCTCTCTGTGGAACTTTaGTGTAGGACAAACCTGCTACTTCCACTGAGCTCC | + |
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Preference number: 3 (lower is better) Translates to: LKTKHHGLSVEL*CRTNLLLPLSS Trigger: GGAGCTCAGTGGAAGTAGCAGGTTTGTCCTACACCAAAGTTCCACAGAGAGACCGTGGTGTTTTGTTTTCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| 3UTR GCA 72 bp | TCACAAAGTCACCTTTGGATGCTCACACACATTGCATaGTACATGTTACAAGTCACACATGAGGGACTCCAG | + |
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Preference number: 3 (lower is better) Translates to: SQSHLWMLTHIA*YMLQVTHEGLQ Trigger: CTGGAGTCCCTCATGTGTGACTTGTAACATGTAGCATGCAATGTGTGTGAGCATCCAAAGGTGACTTTGTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| 3UTR CCA 72 bp | AGAGCTTTCAGGAATGTGACATTACATGTGATGTCATaGGTACTGCATCAGAGGGGAGTCACACTTTCACAG | + |
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Preference number: 3 (lower is better) Translates to: RAFRNVTLHVMS*VLHQRGVTLSQ Trigger: CTGTGAAAGTGTGACTCCCCTCTGATGCAGTACCCATGACATCACATGTAATGTCACATTCCTGAAAGCTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| 3UTR GCA 72 bp | TGCCACCTTTATGTTTGTTTAAAGTCTATGGTAGCTTaGCAAAGGGATGAGCCACAGGTCCAATTCCACAAC | + |
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Preference number: 3 (lower is better) Translates to: CHLYVCLKSMVA*QRDEPQVQFHN Trigger: GTTGTGGAATTGGACCTGTGGCTCATCCCTTTGGCAAGCTACCATAGACTTTAAACAAACATAAAGGTGGCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| 3UTR-3UTR CAA 90 bp | TTCCACAACAATGTCTTTTCCCTATTTCTACTAGACCACAGCAAAATGCCTTGCGTCAGTTTCTGGAGATaGTCTTGCAACATCAGAAGG | + |
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Preference number: 3 (lower is better) Translates to: FHNNVFSLFLLDHSKMPCVSFWR*SCNIRR Trigger: CCTTCTGATGTTGCAAGACAATCTCCAGAAACTGAC...GCAAGGCATTTTGCTGTGGTCTAGTAGAAATAGGGAAAAGACATTGTTGTGGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| 3UTR TCA 72 bp | TGTTTGTTTAAAGTCTATGGTAGCTTGCCAAAGGGATaGGCCACAGGTCCAATTCCACAACAATGTCTTTTC | + |
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Preference number: 3 (lower is better) Translates to: CLFKVYGSLPKG*ATGPIPQQCLF Trigger: GAAAAGACATTGTTGTGGAATTGGACCTGTGGCTCATCCCTTTGGCAAGCTACCATAGACTTTAAACAAACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| 3UTR-3UTR CAA 90 bp | TTCCACAACAATGTCTTTTCCCTATTTCTACTAGACCACAGCAAAATGCCTTGCTTTCTGGAGATTGTCTaGCAACATCAGAAGGAATCA | + |
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Preference number: 3 (lower is better) Translates to: FHNNVFSLFLLDHSKMPCFLEIV*QHQKES Trigger: TGATTCCTTCTGATGTTGCAAGACAATCTCCAGAAA...GCAAGGCATTTTGCTGTGGTCTAGTAGAAATAGGGAAAAGACATTGTTGTGGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| CDS-3UTR CCA 90 bp | ATGGGTACTGCATCAGAGGGGAGTCACACTTTCACAGTAACTGGGGGTAGGAGGGGATGCGCAGCGCGATaGAAAGGCGCACGAGTCCGG | + |
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Preference number: 4 (lower is better) Translates to: MGTASEGSHTFTVTGGRRGCAAR*KGARVR Trigger: CCGGACTCGTGCGCCTTTCCATCGCGCTGCGCATCC...CCTCCTACCCCCAGTTACTGTGAAAGTGTGACTCCCCTCTGATGCAGTACCCAT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| CDS-3UTR TCA 90 bp | ATGGGTACTGCATCAGAGGGGAGTCACACTTTCACAGTAACTGGGGGTAGGAGGCCTTATTCACCCACATaGGGCTGCGGGTCTCATTGG | + |
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Preference number: 4 (lower is better) Translates to: MGTASEGSHTFTVTGGRRPYSPT*GCGSHW Trigger: CCAATGAGACCCGCAGCCTCATGTGGGTGAATAAGG...CCTCCTACCCCCAGTTACTGTGAAAGTGTGACTCCCCTCTGATGCAGTACCCAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| CDS-3UTR TCA 90 bp | CTGGCAGACAGGATAGATGCAGGAACACCAGCATACAATAGCAAAAGGAGAGCTGCTGCCCGTCCACCTTaGAGAAAACAGGGCCGTCGT | + |
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Preference number: 4 (lower is better) Translates to: LADRIDAGTPAYNSKRRAAARPP*RKQGRR Trigger: ACGACGGCCCTGTTTTCTTCAAGGTGGACGGGCAGC...AGCTCTCCTTTTGCTATTGTATGCTGGTGTTCCTGCATCTATCCTGTCTGCCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| CDS-3UTR CCA 90 bp | GCTCCTGTCACACTGGCAGACAGGATAGATGCAGGAACACCAGCATACAATAGCGTCGCTCTCCACTTTTaGTTGGGGCTACACCTTCTG | + |
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Preference number: 4 (lower is better) Translates to: APVTLADRIDAGTPAYNSVALHF*LGLHLL Trigger: CAGAAGGTGTAGCCCCAACCAAAAGTGGAGAGCGAC...GCTATTGTATGCTGGTGTTCCTGCATCTATCCTGTCTGCCAGTGTGACAGGAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| CDS-3UTR GCA 90 bp | TTCCACAACAATGTCTTTTCCCTATTTCTACTAGACCACAGCAAAATGCCTTGCCGTCGTTGGGCTGGATaGGCAGCGCGATGGAAAGGC | + |
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Preference number: 4 (lower is better) Translates to: FHNNVFSLFLLDHSKMPCRRWAG*AARWKG Trigger: GCCTTTCCATCGCGCTGCGCATCCAGCCCAACGACG...GCAAGGCATTTTGCTGTGGTCTAGTAGAAATAGGGAAAAGACATTGTTGTGGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| CDS-3UTR CCA 90 bp | TTCCACAACAATGTCTTTTCCCTATTTCTACTAGACCACAGCAAAATGCCTTGCAAACAGGGCCGTCGTTaGGCTGGATGCGCAGCGCGA | + |
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Preference number: 4 (lower is better) Translates to: FHNNVFSLFLLDHSKMPCKQGRR*AGCAAR Trigger: TCGCGCTGCGCATCCAGCCCAACGACGGCCCTGTTT...GCAAGGCATTTTGCTGTGGTCTAGTAGAAATAGGGAAAAGACATTGTTGTGGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| CDS-3UTR CCA 90 bp | GCTCCTGTCACACTGGCAGACAGGATAGATGCAGGAACACCAGCATACAATAGCCAAGGACACCACCAATaGAAATGTTCTCGACCTGCA | + |
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Preference number: 4 (lower is better) Translates to: APVTLADRIDAGTPAYNSQGHHQ*KCSRPA Trigger: TGCAGGTCGAGAACATTTCCATTGGTGGTGTCCTTG...GCTATTGTATGCTGGTGTTCCTGCATCTATCCTGTCTGCCAGTGTGACAGGAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| CDS-3UTR GCA 90 bp | GCTCCTGTCACACTGGCAGACAGGATAGATGCAGGAACACCAGCATACAATAGCCTTCTGTGTCATAGATaGCGGTGTAGACAACTCTCT | + |
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Preference number: 4 (lower is better) Translates to: APVTLADRIDAGTPAYNSLLCHR*RCRQLS Trigger: AGAGAGTTGTCTACACCGGCATCTATGACACAGAAG...GCTATTGTATGCTGGTGTTCCTGCATCTATCCTGTCTGCCAGTGTGACAGGAGC 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| CDS-3UTR CCA 90 bp | GAATGTGACATTACATGTGATGTCATGGGTACTGCATCAGAGGGGAGTCACACTACCCTTCAGCTCCAGTaGGACAAGGACACCACCAAT | + |
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Preference number: 4 (lower is better) Translates to: ECDITCDVMGTASEGSHTTLQLQ*DKDTTN Trigger: ATTGGTGGTGTCCTTGTCCCACTGGAGCTGAAGGGT...AGTGTGACTCCCCTCTGATGCAGTACCCATGACATCACATGTAATGTCACATTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| CDS-3UTR CCA 90 bp | CTGGCAGACAGGATAGATGCAGGAACACCAGCATACAATAGCAAAAGGAGAGCTAAAGGCATGGTGATCTaGATGGGTTGTCGCTCTCCA | + |
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Preference number: 4 (lower is better) Translates to: LADRIDAGTPAYNSKRRAKGMVI*MGCRSP Trigger: TGGAGAGCGACAACCCATCCAGATCACCATGCCTTT...AGCTCTCCTTTTGCTATTGTATGCTGGTGTTCCTGCATCTATCCTGTCTGCCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| CDS-3UTR CCA 90 bp | TCAAAAGTTGATTACCATTCCATACACGGTTGTACAAAGTTCAAGTTAAAGGGTGGGCCGTCGTTGGGCTaGATGCGCAGCGCGATGGAA | + |
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Preference number: 4 (lower is better) Translates to: SKVDYHSIHGCTKFKLKGGPSLG*MRSAME Trigger: TTCCATCGCGCTGCGCATCCAGCCCAACGACGGCCC...ACCCTTTAACTTGAACTTTGTACAACCGTGTATGGAATGGTAATCAACTTTTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| CDS-3UTR CCA 90 bp | TTGGTTAAGGCTTGTGCTGGTTTGTCTAAAGGTCAGTTTCTGGAGATTGTCTTGTTGATTGTGCGGTTCTaGCCAAAACGCTGCCCGTCC | + |
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Preference number: 4 (lower is better) Translates to: LVKACAGLSKGQFLEIVLLIVRF*PKRCPS Trigger: GGACGGGCAGCGTTTTGGCCAGAACCGCACAATCAA...CAAGACAATCTCCAGAAACTGACCTTTAGACAAACCAGCACAAGCCTTAACCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| CDS-3UTR CCA 90 bp | TGGTTAAGGCTTGTGCTGGTTTGTCTAAAGGTCAGTTTCTGGAGATTGTCTTGCCTCTCCACTTTTGGTTaGGGCTACACCTTCTGTGTC | + |
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Preference number: 4 (lower is better) Translates to: WLRLVLVCLKVSFWRLSCLSTFG*GYTFCV Trigger: GACACAGAAGGTGTAGCCCCAACCAAAAGTGGAGAG...GCAAGACAATCTCCAGAAACTGACCTTTAGACAAACCAGCACAAGCCTTAACCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| CDS-3UTR GCA 90 bp | TTGGTTAAGGCTTGTGCTGGTTTGTCTAAAGGTCAGTTTCTGGAGATTGTCTTGTTCTGGCCAAAACGCTaGCCGTCCACCTTGAAGAAA | + |
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Preference number: 4 (lower is better) Translates to: LVKACAGLSKGQFLEIVLFWPKR*PSTLKK Trigger: TTTCTTCAAGGTGGACGGGCAGCGTTTTGGCCAGAA...CAAGACAATCTCCAGAAACTGACCTTTAGACAAACCAGCACAAGCCTTAACCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| CDS-3UTR CCA 90 bp | TGCCACCTTTATGTTTGTTTAAAGTCTATGGTAGCTTGCCAAAGGGATGAGCCAGGCTGCGGGTCTCATTaGGCTTGCATTCATACTCAA | + |
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Preference number: 4 (lower is better) Translates to: CHLYVCLKSMVACQRDEPGCGSH*ACIHTQ Trigger: TTGAGTATGAATGCAAGCCCAATGAGACCCGCAGCC...TGGCTCATCCCTTTGGCAAGCTACCATAGACTTTAAACAAACATAAAGGTGGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| 3UTR CAA 72 bp | ATGGTGTGGTGTGCCTTGGTTAAGGCTTGTGCTGGTTaGTCTAAAGGTCAGTTTCTGGAGATTGTCTTGCAA | + |
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Preference number: 4 (lower is better) Translates to: MVWCALVKACAG*SKGQFLEIVLQ Trigger: TTGCAAGACAATCTCCAGAAACTGACCTTTAGACAAACCAGCACAAGCCTTAACCAAGGCACACCACACCAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| CDS-3UTR GCA 90 bp | TTCCACAACAATGTCTTTTCCCTATTTCTACTAGACCACAGCAAAATGCCTTGCGAAATGTTCTCGACCTaGAGTGTTGTGGGCTTAATC | + |
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Preference number: 4 (lower is better) Translates to: FHNNVFSLFLLDHSKMPCEMFST*SVVGLI Trigger: GATTAAGCCCACAACACTGCAGGTCGAGAACATTTC...GCAAGGCATTTTGCTGTGGTCTAGTAGAAATAGGGAAAAGACATTGTTGTGGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| CDS CCA 90 bp | AAACGCTGCCCGTCCACCTTGAAGAAAACAGGGCCGTCGTTGGGCTaGATGCGCAGCGCGATGGAAAGGCGCACGAGTCCGGGTAGGTCC | + |
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Preference number: 5 (lower is better) Translates to: KRCPSTLKKTGPSLG*MRSAMERRTSPGRS Trigger: GGACCTACCCGGACTCGTGCGCCTTTCCATCGCGCTGCGCATCCAGCCCAACGACGGCCCTGTTTTCTTCAAGGTGGACGGGCAGCGTTT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000058159.6 ENSMUST00000131515.2 |
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| CDS GCA 90 bp | GAGGAGCCGGTGAGCAGCTTGATTGTGCGGTTCTGGCCAAAACGCTaGCCGTCCACCTTGAAGAAAACAGGGCCGTCGTTGGGCTGGATG | + |
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Preference number: 5 (lower is better) Translates to: EEPVSSLIVRFWPKR*PSTLKKTGPSLGWM Trigger: CATCCAGCCCAACGACGGCCCTGTTTTCTTCAAGGTGGACGGGCAGCGTTTTGGCCAGAACCGCACAATCAAGCTGCTCACCGGCTCCTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000058159.6 ENSMUST00000131515.2 |
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| CDS-3UTR CAA 90 bp | CTACTTCCACTGAGCTCCTGTCACACTGGCAGACAGGATAGATGCAGGAACACCAAAACAGGGCCGTCGTaGGGCTGGATGCGCAGCGCG | + |
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Preference number: 5 (lower is better) Translates to: LLPLSSCHTGRQDRCRNTKTGPS*GWMRSA Trigger: CGCGCTGCGCATCCAGCCCAACGACGGCCCTGTTTT...GGTGTTCCTGCATCTATCCTGTCTGCCAGTGTGACAGGAGCTCAGTGGAAGTAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| CDS-3UTR CAA 90 bp | CTACTTCCACTGAGCTCCTGTCACACTGGCAGACAGGATAGATGCAGGAACACCCGCTGCCCGTCCACCTaGAAGAAAACAGGGCCGTCG | + |
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Preference number: 5 (lower is better) Translates to: LLPLSSCHTGRQDRCRNTRCPST*KKTGPS Trigger: CGACGGCCCTGTTTTCTTCAAGGTGGACGGGCAGCG...GGTGTTCCTGCATCTATCCTGTCTGCCAGTGTGACAGGAGCTCAGTGGAAGTAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| CDS CCA 90 bp | GTAGACAACTCTCTCCCCGTCAGGCTCTTTACCCTTCAGCTCCAGTaGGACAAGGACACCACCAATGGAAATGTTCTCGACCTGCAGTGT | + |
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Preference number: 5 (lower is better) Translates to: VDNSLPVRLFTLQLQ*DKDTTNGNVLDLQC Trigger: ACACTGCAGGTCGAGAACATTTCCATTGGTGGTGTCCTTGTCCCACTGGAGCTGAAGGGTAAAGAGCCTGACGGGGAGAGAGTTGTCTAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000058159.6 ENSMUST00000131515.2 |
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| CDS-3UTR CAA 90 bp | CTACTTCCACTGAGCTCCTGTCACACTGGCAGACAGGATAGATGCAGGAACACCAGGCTGCGGGTCTCATaGGGCTTGCATTCATACTCA | + |
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Preference number: 5 (lower is better) Translates to: LLPLSSCHTGRQDRCRNTRLRVS*GLHSYS Trigger: TGAGTATGAATGCAAGCCCAATGAGACCCGCAGCCT...GGTGTTCCTGCATCTATCCTGTCTGCCAGTGTGACAGGAGCTCAGTGGAAGTAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| CDS-3UTR CAA 90 bp | GAATGTGACATTACATGTGATGTCATGGGTACTGCATCAGAGGGGAGTCACACTGAGCCGGTGAGCAGCTaGATTGTGCGGTTCTGGCCA | + |
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Preference number: 5 (lower is better) Translates to: ECDITCDVMGTASEGSHTEPVSS*IVRFWP Trigger: TGGCCAGAACCGCACAATCAAGCTGCTCACCGGCTC...AGTGTGACTCCCCTCTGATGCAGTACCCATGACATCACATGTAATGTCACATTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| CDS-3UTR CAA 90 bp | GCTCCTGTCACACTGGCAGACAGGATAGATGCAGGAACACCAGCATACAATAGCGGTGATCTGGATGGGTaGTCGCTCTCCACTTTTGGT | + |
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Preference number: 5 (lower is better) Translates to: APVTLADRIDAGTPAYNSGDLDG*SLSTFG Trigger: ACCAAAAGTGGAGAGCGACAACCCATCCAGATCACC...GCTATTGTATGCTGGTGTTCCTGCATCTATCCTGTCTGCCAGTGTGACAGGAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| CDS CCA 90 bp | GAAAGGCATGGTGATCTGGATGGGTTGTCGCTCTCCACTTTTGGTTaGGGCTACACCTTCTGTGTCATAGATGCCGGTGTAGACAACTCT | + |
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Preference number: 5 (lower is better) Translates to: ERHGDLDGLSLSTFG*GYTFCVIDAGVDNS Trigger: AGAGTTGTCTACACCGGCATCTATGACACAGAAGGTGTAGCCCCAACCAAAAGTGGAGAGCGACAACCCATCCAGATCACCATGCCTTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| CDS CCA 90 bp | TACAGGCATGGTGATCTGGATGGGTTGTCGCTCTCCACTTTTGGTTaGGGCTACACCTTCTGTGTCATAGATGCCGGTGTAGACAACTCT | + |
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Preference number: 5 (lower is better) Translates to: YRHGDLDGLSLSTFG*GYTFCVIDAGVDNS Trigger: AGAGTTGTCTACACCGGCATCTATGACACAGAAGGTGTAGCCCCAACCAAAAGTGGAGAGCGACAACCCATCCAGATCACCATGCCTGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000131515.2 |
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| CDS-3UTR CAA 90 bp | GAGGGGAGTCACACTTTCACAGTAACTGGGGGTAGGAGGTCATTGGGAAACAGCCGGGTCTCATTGGGCTaGCATTCATACTCAATGACA | + |
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Preference number: 5 (lower is better) Translates to: EGSHTFTVTGGRRSLGNSRVSLG*HSYSMT Trigger: TGTCATTGAGTATGAATGCAAGCCCAATGAGACCCG...GCTGTTTCCCAATGACCTCCTACCCCCAGTTACTGTGAAAGTGTGACTCCCCTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| CDS-3UTR CAA 90 bp | TGCCACCTTTATGTTTGTTTAAAGTCTATGGTAGCTTGCCAAAGGGATGAGCCAGCTCTCCACTTTTGGTaGGGGCTACACCTTCTGTGT | + |
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Preference number: 5 (lower is better) Translates to: CHLYVCLKSMVACQRDEPALHFW*GLHLLC Trigger: ACACAGAAGGTGTAGCCCCAACCAAAAGTGGAGAGC...TGGCTCATCCCTTTGGCAAGCTACCATAGACTTTAAACAAACATAAAGGTGGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| CDS-3UTR CAA 90 bp | GTGGAACTTTGGTGTAGGACAAACCTGCTACTTCCACTGAGCTCCTGTCACACTATTGTAGAATTTGACTaGCCACACTGTCTCGAAGGT | + |
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Preference number: 5 (lower is better) Translates to: VELWCRTNLLLPLSSCHTIVEFD*PHCLEG Trigger: ACCTTCGAGACAGTGTGGCAAGTCAAATTCTACAAT...AGTGTGACAGGAGCTCAGTGGAAGTAGCAGGTTTGTCCTACACCAAAGTTCCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| CDS CAA 72 bp | CGCTGCCCGTCCACCTTGAAGAAAACAGGGCCGTCGTaGGGCTGGATGCGCAGCGCGATGGAAAGGCGCACG | + |
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Preference number: 6 (lower is better) Translates to: RCPSTLKKTGPS*GWMRSAMERRT Trigger: CGTGCGCCTTTCCATCGCGCTGCGCATCCAGCCCAACGACGGCCCTGTTTTCTTCAAGGTGGACGGGCAGCG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000058159.6 ENSMUST00000131515.2 |
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| CDS CCA 72 bp | CCGTCCACCTTGAAGAAAACAGGGCCGTCGTTGGGCTaGATGCGCAGCGCGATGGAAAGGCGCACGAGTCCG | + |
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Preference number: 6 (lower is better) Translates to: PSTLKKTGPSLG*MRSAMERRTSP Trigger: CGGACTCGTGCGCCTTTCCATCGCGCTGCGCATCCAGCCCAACGACGGCCCTGTTTTCTTCAAGGTGGACGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000058159.6 ENSMUST00000131515.2 |
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| CDS CAA 90 bp | TGGCCAAAACGCTGCCCGTCCACCTTGAAGAAAACAGGGCCGTCGTaGGGCTGGATGCGCAGCGCGATGGAAAGGCGCACGAGTCCGGGT | + |
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Preference number: 6 (lower is better) Translates to: WPKRCPSTLKKTGPS*GWMRSAMERRTSPG Trigger: ACCCGGACTCGTGCGCCTTTCCATCGCGCTGCGCATCCAGCCCAACGACGGCCCTGTTTTCTTCAAGGTGGACGGGCAGCGTTTTGGCCA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000058159.6 ENSMUST00000131515.2 |
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| CDS CAA 90 bp | AGCAGCTTGATTGTGCGGTTCTGGCCAAAACGCTGCCCGTCCACCTaGAAGAAAACAGGGCCGTCGTTGGGCTGGATGCGCAGCGCGATG | + |
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Preference number: 6 (lower is better) Translates to: SSLIVRFWPKRCPST*KKTGPSLGWMRSAM Trigger: CATCGCGCTGCGCATCCAGCCCAACGACGGCCCTGTTTTCTTCAAGGTGGACGGGCAGCGTTTTGGCCAGAACCGCACAATCAAGCTGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000058159.6 ENSMUST00000131515.2 |
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| CDS TCA 72 bp | TTGTGCGGTTCTGGCCAAAACGCTGCCCGTCCACCTTaGAGAAAACAGGGCCGTCGTTGGGCTGGATGCGCA | + |
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Preference number: 6 (lower is better) Translates to: LCGSGQNAARPP*RKQGRRWAGCA Trigger: TGCGCATCCAGCCCAACGACGGCCCTGTTTTCTTCAAGGTGGACGGGCAGCGTTTTGGCCAGAACCGCACAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000058159.6 ENSMUST00000131515.2 |
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| CDS CAA 72 bp | ATTGTGCGGTTCTGGCCAAAACGCTGCCCGTCCACCTaGAAGAAAACAGGGCCGTCGTTGGGCTGGATGCGC | + |
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Preference number: 6 (lower is better) Translates to: IVRFWPKRCPST*KKTGPSLGWMR Trigger: GCGCATCCAGCCCAACGACGGCCCTGTTTTCTTCAAGGTGGACGGGCAGCGTTTTGGCCAGAACCGCACAAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000058159.6 ENSMUST00000131515.2 |
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| CDS CCA 72 bp | CCGCACCCGCAGCTTGGACTTACAGGCATGGTGATCTaGATGGGTTGTCGCTCTCCACTTTTGGTTGGGGCT | + |
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Preference number: 6 (lower is better) Translates to: PHPQLGLTGMVI*MGCRSPLLVGA Trigger: AGCCCCAACCAAAAGTGGAGAGCGACAACCCATCCAGATCACCATGCCTGTAAGTCCAAGCTGCGGGTGCGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000131515.2 |
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| CDS GCA 72 bp | GTGAGCAGCTTGATTGTGCGGTTCTGGCCAAAACGCTaGCCGTCCACCTTGAAGAAAACAGGGCCGTCGTTG | + |
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Preference number: 6 (lower is better) Translates to: VSSLIVRFWPKR*PSTLKKTGPSL Trigger: CAACGACGGCCCTGTTTTCTTCAAGGTGGACGGGCAGCGTTTTGGCCAGAACCGCACAATCAAGCTGCTCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000058159.6 ENSMUST00000131515.2 |
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| CDS CAA 90 bp | CCCGCACCCGCAGCTTGGACTTACAGGCATGGTGATCTGGATGGGTaGTCGCTCTCCACTTTTGGTTGGGGCTACACCTTCTGTGTCATA | + |
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Preference number: 6 (lower is better) Translates to: PAPAAWTYRHGDLDG*SLSTFGWGYTFCVI Trigger: TATGACACAGAAGGTGTAGCCCCAACCAAAAGTGGAGAGCGACAACCCATCCAGATCACCATGCCTGTAAGTCCAAGCTGCGGGTGCGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000131515.2 |
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| CDS TCA 72 bp | TATCCCCGCACCCGCAGCTTGGACTTACAGGCATGGTaGTCTGGATGGGTTGTCGCTCTCCACTTTTGGTTG | + |
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Preference number: 6 (lower is better) Translates to: YPRTRSLDLQAW*SGWVVALHFWL Trigger: CAACCAAAAGTGGAGAGCGACAACCCATCCAGATCACCATGCCTGTAAGTCCAAGCTGCGGGTGCGGGGATA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000131515.2 |
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| CDS CCA 72 bp | TCTCTCCCCGTCAGGCTCTTTACCCTTCAGCTCCAGTaGGACAAGGACACCACCAATGGAAATGTTCTCGAC | + |
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Preference number: 6 (lower is better) Translates to: SLPVRLFTLQLQ*DKDTTNGNVLD Trigger: GTCGAGAACATTTCCATTGGTGGTGTCCTTGTCCCACTGGAGCTGAAGGGTAAAGAGCCTGACGGGGAGAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000058159.6 ENSMUST00000131515.2 |
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| CDS CAA 72 bp | GCAGCTTGGACTTACAGGCATGGTGATCTGGATGGGTaGTCGCTCTCCACTTTTGGTTGGGGCTACACCTTC | + |
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Preference number: 6 (lower is better) Translates to: AAWTYRHGDLDG*SLSTFGWGYTF Trigger: GAAGGTGTAGCCCCAACCAAAAGTGGAGAGCGACAACCCATCCAGATCACCATGCCTGTAAGTCCAAGCTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000131515.2 |
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| CDS TCA 72 bp | GGCTGCGGGTCTCATTGGGCTTGCATTCATACTCAATaGCAGAGAAAGGACTTCCCCACTGGCAATGGTCTC | + |
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Preference number: 6 (lower is better) Translates to: GCGSHWACIHTQ*QRKDFPTGNGL Trigger: GAGACCATTGCCAGTGGGGAAGTCCTTTCTCTGTCATTGAGTATGAATGCAAGCCCAATGAGACCCGCAGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| CDS CCA 72 bp | GGTGATCTGGATGGGTTGTCGCTCTCCACTTTTGGTTaGGGCTACACCTTCTGTGTCATAGATGCCGGTGTA | + |
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Preference number: 6 (lower is better) Translates to: GDLDGLSLSTFG*GYTFCVIDAGV Trigger: TACACCGGCATCTATGACACAGAAGGTGTAGCCCCAACCAAAAGTGGAGAGCGACAACCCATCCAGATCACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000058159.6 ENSMUST00000131515.2 |
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| CDS CAA 72 bp | CCCAATGTCTGTGAAAGGCATGGTGATCTGGATGGGTaGTCGCTCTCCACTTTTGGTTGGGGCTACACCTTC | + |
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Preference number: 6 (lower is better) Translates to: PNVCERHGDLDG*SLSTFGWGYTF Trigger: GAAGGTGTAGCCCCAACCAAAAGTGGAGAGCGACAACCCATCCAGATCACCATGCCTTTCACAGACATTGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| CDS CAA 90 bp | CAGAGGAAGGACTCCTTATTCACCCACATGAGGCTGCGGGTCTCATaGGGCTTGCATTCATACTCAATGACAGAGAAAGGACTTCCCCAC | + |
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Preference number: 6 (lower is better) Translates to: QRKDSLFTHMRLRVS*GLHSYSMTEKGLPH Trigger: GTGGGGAAGTCCTTTCTCTGTCATTGAGTATGAATGCAAGCCCAATGAGACCCGCAGCCTCATGTGGGTGAATAAGGAGTCCTTCCTCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| CDS TCA 72 bp | GAAGTAGTGATTTCTCCCCCTGCAGTTTCTTTGTTCTaGAGCCATATCCCCGCACCCGCAGCTTGGACTTAC | + |
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Preference number: 6 (lower is better) Translates to: EVVISPPAVSLF*SHIPAPAAWTY Trigger: GTAAGTCCAAGCTGCGGGTGCGGGGATATGGCTTCAGAACAAAGAAACTGCAGGGGGAGAAATCACTACTTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000131515.2 |
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| CDS CAA 90 bp | AAGGACTCCTTATTCACCCACATGAGGCTGCGGGTCTCATTGGGCTaGCATTCATACTCAATGACAGAGAAAGGACTTCCCCACTGGCAA | + |
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Preference number: 6 (lower is better) Translates to: KDSLFTHMRLRVSLG*HSYSMTEKGLPHWQ Trigger: TTGCCAGTGGGGAAGTCCTTTCTCTGTCATTGAGTATGAATGCAAGCCCAATGAGACCCGCAGCCTCATGTGGGTGAATAAGGAGTCCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| CDS CAA 90 bp | TCCCCACTGGCAATGGTCTCGCTTGTGGTAATTGTAGAATTTGACTaGCCACACTGTCTCGAAGGTCCCAATGTCTGTGAAAGGCATGGT | + |
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Preference number: 6 (lower is better) Translates to: SPLAMVSLVVIVEFD*PHCLEGPNVCERHG Trigger: ACCATGCCTTTCACAGACATTGGGACCTTCGAGACAGTGTGGCAAGTCAAATTCTACAATTACCACAAGCGAGACCATTGCCAGTGGGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| CDS CAA 72 bp | TTATTCACCCACATGAGGCTGCGGGTCTCATTGGGCTaGCATTCATACTCAATGACAGAGAAAGGACTTCCC | + |
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Preference number: 6 (lower is better) Translates to: LFTHMRLRVSLG*HSYSMTEKGLP Trigger: GGGAAGTCCTTTCTCTGTCATTGAGTATGAATGCAAGCCCAATGAGACCCGCAGCCTCATGTGGGTGAATAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| CDS CAA 72 bp | GACTCCTTATTCACCCACATGAGGCTGCGGGTCTCATaGGGCTTGCATTCATACTCAATGACAGAGAAAGGA | + |
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Preference number: 6 (lower is better) Translates to: DSLFTHMRLRVS*GLHSYSMTEKG Trigger: TCCTTTCTCTGTCATTGAGTATGAATGCAAGCCCAATGAGACCCGCAGCCTCATGTGGGTGAATAAGGAGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| CDS CAA 72 bp | GCAATGGTCTCGCTTGTGGTAATTGTAGAATTTGACTaGCCACACTGTCTCGAAGGTCCCAATGTCTGTGAA | + |
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Preference number: 6 (lower is better) Translates to: AMVSLVVIVEFD*PHCLEGPNVCE Trigger: TTCACAGACATTGGGACCTTCGAGACAGTGTGGCAAGTCAAATTCTACAATTACCACAAGCGAGACCATTGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058159.6 |
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| CDS TCA 72 bp | AGTAAATATTACTCTCTCTCTCTTTTCACAGGTCCATaGGGGAAACTGAACCCTATTTCCATAGAAACTGGC | + |
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Preference number: 6 (lower is better) Translates to: SKYYSLSLFTGP*GKLNPISIETG Trigger: GCCAGTTTCTATGGAAATAGGGTTCAGTTTCCCTCATGGACCTGTGAAAAGAGAGAGAGAGTAATATTTACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000131515.2 |
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