Pregenerated sensors for CNPY4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036968Ensembl transcript IDs: ENSMUST00000110932.2, ENSMUST00000110934.9
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CGGCCTCATGTTTGCAGTGTATATTGGTTCTTGAGGGTCTCTTTTTaGCTTCTTACTTTAAGACAGGGTTCAGCTCTGGTTGGTCCCGAA | + |
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Preference number: 1 (lower is better) Translates to: RPHVCSVYWFLRVSF*LLTLRQGSALVGPE Trigger: TTCGGGACCAACCAGAGCTGAACCCTGTCTTAAAGTAAGAAGCCAAAAAGAGACCCTCAAGAACCAATATACACTGCAAACATGAGGCCG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000110934.9 |
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| 3UTR GCA 90 bp | GCATCCTGTTCTTATTCACAGATTGATGGTATACGGCCTCATGTTTaGAGTGTATATTGGTTCTTGAGGGTCTCTTTTTGGCTTCTTACT | + |
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Preference number: 1 (lower is better) Translates to: ASCSYSQIDGIRPHV*SVYWFLRVSFWLLT Trigger: AGTAAGAAGCCAAAAAGAGACCCTCAAGAACCAATATACACTGCAAACATGAGGCCGTATACCATCAATCTGTGAATAAGAACAGGATGC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000110934.9 |
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| 3UTR CCA 90 bp | TATTCACAGATTGATGGTATACGGCCTCATGTTTGCAGTGTATATTaGTTCTTGAGGGTCTCTTTTTGGCTTCTTACTTTAAGACAGGGT | + |
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Preference number: 1 (lower is better) Translates to: YSQIDGIRPHVCSVY*FLRVSFWLLTLRQG Trigger: ACCCTGTCTTAAAGTAAGAAGCCAAAAAGAGACCCTCAAGAACCAATATACACTGCAAACATGAGGCCGTATACCATCAATCTGTGAATA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000110934.9 |
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| 3UTR-3UTR GCA 90 bp | TTTATTTTCCTGATACAGGGGCTCAAGGAGACCAAGATGGTCTTGAGCTCGCTACTCATCGATAATGTGTaGATGTTTGAAATGGGACTC | + |
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Preference number: 2 (lower is better) Translates to: FIFLIQGLKETKMVLSSLLIDNV*MFEMGL Trigger: GAGTCCCATTTCAAACATGCACACATTATCGATGAG...TAGCGAGCTCAAGACCATCTTGGTCTCCTTGAGCCCCTGTATCAGGAAAATAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110934.9 |
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| 3UTR CAA 90 bp | TGGCCCCACTGTCTGGGTGCTCCCTCATCGATAATGTGTGCATGTTaGAAATGGGACTCAGCTGATATATATATAAAAGGTTTAATAGCA | + |
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Preference number: 2 (lower is better) Translates to: WPHCLGAPSSIMCAC*KWDSADIYIKGLIA Trigger: TGCTATTAAACCTTTTATATATATATCAGCTGAGTCCCATTTCAAACATGCACACATTATCGATGAGGGAGCACCCAGACAGTGGGGCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110934.9 |
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| 3UTR-3UTR CCA 90 bp | TTTATTTTCCTGATACAGGGGCTCAAGGAGACCAAGATGGTCTTGAGCTCGCTATTGAGGGTCTCTTTTTaGCTTCTTACTTTAAGACAG | + |
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Preference number: 2 (lower is better) Translates to: FIFLIQGLKETKMVLSSLLRVSF*LLTLRQ Trigger: CTGTCTTAAAGTAAGAAGCCAAAAAGAGACCCTCAA...TAGCGAGCTCAAGACCATCTTGGTCTCCTTGAGCCCCTGTATCAGGAAAATAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000110934.9 |
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| 3UTR-3UTR GCA 90 bp | CAACCAGTATCCTTGGGGTGGATAATTATAAGAACACCATTAGCAACTAATAGAGTTCAATTAAGTGGCTaGATGTGGTTCAACCCTGAA | + |
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Preference number: 2 (lower is better) Translates to: QPVSLGWIIIRTPLATNRVQLSG*MWFNPE Trigger: TTCAGGGTTGAACCACATGCAGCCACTTAATTGAAC...TCTATTAGTTGCTAATGGTGTTCTTATAATTATCCACCCCAAGGATACTGGTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110934.9 |
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| 3UTR CCA 72 bp | TGTCACCACATACTTGTTCAATTAAGTGGCTGCATGTaGTTCAACCCTGAAGGCAAAACTTGCTTCTGCTTC | + |
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Preference number: 3 (lower is better) Translates to: CHHILVQLSGCM*FNPEGKTCFCF Trigger: GAAGCAGAAGCAAGTTTTGCCTTCAGGGTTGAACCACATGCAGCCACTTAATTGAACAAGTATGTGGTGACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110934.9 |
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| 3UTR GCA 72 bp | CAAAACTGTCACCACATACTTGTTCAATTAAGTGGCTaGATGTGGTTCAACCCTGAAGGCAAAACTTGCTTC | + |
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Preference number: 3 (lower is better) Translates to: QNCHHILVQLSG*MWFNPEGKTCF Trigger: GAAGCAAGTTTTGCCTTCAGGGTTGAACCACATGCAGCCACTTAATTGAACAAGTATGTGGTGACAGTTTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110934.9 |
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| 3UTR TCA 72 bp | TCACTCTCTTCCAGCATCCTGTTCTTATTCACAGATTaGTGGTATACGGCCTCATGTTTGCAGTGTATATTG | + |
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Preference number: 3 (lower is better) Translates to: SLSSSILFLFTD*WYTASCLQCIL Trigger: CAATATACACTGCAAACATGAGGCCGTATACCATCAATCTGTGAATAAGAACAGGATGCTGGAAGAGAGTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110934.9 |
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| 3UTR CCA 72 bp | GTTTGCAGTGTATATTGGTTCTTGAGGGTCTCTTTTTaGCTTCTTACTTTAAGACAGGGTTCAGCTCTGGTT | + |
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Preference number: 3 (lower is better) Translates to: VCSVYWFLRVSF*LLTLRQGSALV Trigger: AACCAGAGCTGAACCCTGTCTTAAAGTAAGAAGCCAAAAAGAGACCCTCAAGAACCAATATACACTGCAAAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000110934.9 |
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| 3UTR CCA 72 bp | ATTGATGGTATACGGCCTCATGTTTGCAGTGTATATTaGTTCTTGAGGGTCTCTTTTTGGCTTCTTACTTTA | + |
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Preference number: 3 (lower is better) Translates to: IDGIRPHVCSVY*FLRVSFWLLTL Trigger: TAAAGTAAGAAGCCAAAAAGAGACCCTCAAGAACCAATATACACTGCAAACATGAGGCCGTATACCATCAAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000110934.9 |
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| 3UTR CCA 72 bp | GGTGCTCCCTCATCGATAATGTGTGCATGTTTGAAATaGGACTCAGCTGATATATATATAAAAGGTTTAATA | + |
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Preference number: 3 (lower is better) Translates to: GAPSSIMCACLK*DSADIYIKGLI Trigger: TATTAAACCTTTTATATATATATCAGCTGAGTCCCATTTCAAACATGCACACATTATCGATGAGGGAGCACC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110934.9 |
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| CDS-3UTR TCA 90 bp | CCCTTCTCCTTTCCTGTTGCCATTCTGGGTCCCCAGGATCATAGCCGAGATCATCGTACGCTGCCAGGATaGAAAGCAGTATCTCCAGCC | + |
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Preference number: 4 (lower is better) Translates to: PFSFPVAILGPQDHSRDHRTLPG*KAVSPA Trigger: GGCTGGAGATACTGCTTTTCATCCTGGCAGCGTACG...ATGATCTCGGCTATGATCCTGGGGACCCAGAATGGCAACAGGAAAGGAGAAGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110934.9 |
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| CDS-3UTR TCA 90 bp | AAGGACGGGAGAGCACAAGAGTTTAGAAAACTCTCCACGACCCATCCTTGGGGTCCAGTGTCTAGCACCTaGCCCAGCTCCAGCACTTCT | + |
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Preference number: 4 (lower is better) Translates to: KDGRAQEFRKLSTTHPWGPVSST*PSSSTS Trigger: AGAAGTGCTGGAGCTGGGTCAGGTGCTAGACACTGG...ACCCCAAGGATGGGTCGTGGAGAGTTTTCTAAACTCTTGTGCTCTCCCGTCCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110934.9 |
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| CDS-3UTR GCA 90 bp | GGGCGGGGAAGGACGGGAGAGCACAAGAGTTTAGAAAACTCTCCACGACCCATCAGCATCGTCTCACACTaGTTCTTGAGGAATGTGACC | + |
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Preference number: 4 (lower is better) Translates to: GRGRTGEHKSLENSPRPISIVSH*FLRNVT Trigger: GGTCACATTCCTCAAGAAGCAGTGTGAGACGATGCT...GATGGGTCGTGGAGAGTTTTCTAAACTCTTGTGCTCTCCCGTCCTTCCCCGCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110934.9 |
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| CDS-3UTR TCA 90 bp | GTTCAATTAAGTGGCTGCATGTGGTTCAACCCTGAAGGCAAAACTTGCTTCTGCTGGAGGGGCTGCTCCTaGTGGTGGAAGTACCAGTCC | + |
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Preference number: 4 (lower is better) Translates to: VQLSGCMWFNPEGKTCFCWRGCS*WWKYQS Trigger: GGACTGGTACTTCCACCATCAGGAGCAGCCCCTCCA...GCAGAAGCAAGTTTTGCCTTCAGGGTTGAACCACATGCAGCCACTTAATTGAAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110934.9 |
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| CDS-3UTR GCA 90 bp | AAGGACGGGAGAGCACAAGAGTTTAGAAAACTCTCCACGACCCATCCTTGGGGTCGTGTCTCTTCCTCTTaGCAGTGTCTAGCACCTGAC | + |
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Preference number: 4 (lower is better) Translates to: KDGRAQEFRKLSTTHPWGRVSSS*QCLAPD Trigger: GTCAGGTGCTAGACACTGGCAAGAGGAAGAGACACG...ACCCCAAGGATGGGTCGTGGAGAGTTTTCTAAACTCTTGTGCTCTCCCGTCCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110934.9 |
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| CDS-3UTR CCA 90 bp | GGGCGGGGAAGGACGGGAGAGCACAAGAGTTTAGAAAACTCTCCACGACCCATCACACTTCGCATTTGCTaGGCAAACGTTCTGTGTCAT | + |
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Preference number: 4 (lower is better) Translates to: GRGRTGEHKSLENSPRPITLRIC*ANVLCH Trigger: ATGACACAGAACGTTTGCCCAGCAAATGCGAAGTGT...GATGGGTCGTGGAGAGTTTTCTAAACTCTTGTGCTCTCCCGTCCTTCCCCGCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110934.9 |
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| CDS-3UTR CCA 90 bp | GTTCAATTAAGTGGCTGCATGTGGTTCAACCCTGAAGGCAAAACTTGCTTCTGCCGACTCAACGCTTCCTaGAGCTCCATGCTCAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: VQLSGCMWFNPEGKTCFCRLNAS*SSMLSS Trigger: GCTGCTGAGCATGGAGCTCCAGGAAGCGTTGAGTCG...GCAGAAGCAAGTTTTGCCTTCAGGGTTGAACCACATGCAGCCACTTAATTGAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110934.9 |
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| CDS-3UTR GCA 90 bp | CCTGTTGCCATTCTGGGTCCCCAGGATCATAGCCGAGATCATACCAAGAAGACACAGGCCTTTCAGTGTTaGCATAGTCTGACTTTGACC | + |
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Preference number: 4 (lower is better) Translates to: PVAILGPQDHSRDHTKKTQAFQC*HSLTLT Trigger: GGTCAAAGTCAGACTATGGCAACACTGAAAGGCCTG...TGTCTTCTTGGTATGATCTCGGCTATGATCCTGGGGACCCAGAATGGCAACAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110934.9 |
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| CDS-3UTR GCA 90 bp | GTTCAATTAAGTGGCTGCATGTGGTTCAACCCTGAAGGCAAAACTTGCTTCTGCCTCCTCTTCGTCATCTaGCTCCTCCTGCCCATCACT | + |
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Preference number: 4 (lower is better) Translates to: VQLSGCMWFNPEGKTCFCLLFVI*LLLPIT Trigger: AGTGATGGGCAGGAGGAGGCAGATGACGAAGAGGAG...GCAGAAGCAAGTTTTGCCTTCAGGGTTGAACCACATGCAGCCACTTAATTGAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110934.9 |
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| CDS-3UTR GCA 90 bp | CCTGTTGCCATTCTGGGTCCCCAGGATCATAGCCGAGATCATACCAAGAAGACAATCTTAGTGAGCCCTTaGGTTCAGCATGAACATTGT | + |
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Preference number: 4 (lower is better) Translates to: PVAILGPQDHSRDHTKKTILVSP*VQHEHC Trigger: ACAATGTTCATGCTGAACGCAAGGGCTCACTAAGAT...TGTCTTCTTGGTATGATCTCGGCTATGATCCTGGGGACCCAGAATGGCAACAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110934.9 |
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| CDS-3UTR GCA 90 bp | GTTCAATTAAGTGGCTGCATGTGGTTCAACCCTGAAGGCAAAACTTGCTTCTGCAGATCTTCTGGGTCATaGTTGGGATTGCCTGAAGTC | + |
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Preference number: 4 (lower is better) Translates to: VQLSGCMWFNPEGKTCFCRSSGS*LGLPEV Trigger: GACTTCAGGCAATCCCAAGCATGACCCAGAAGATCT...GCAGAAGCAAGTTTTGCCTTCAGGGTTGAACCACATGCAGCCACTTAATTGAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110934.9 |
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| CDS-3UTR CCA 90 bp | CCCCAACCAGTATCCTTGGGGTGGATAATTATAAGAACACCATTAGCAACTAATAGCAGTTTCAGAGGCTaGAAGCACATGCCGCTCACA | + |
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Preference number: 4 (lower is better) Translates to: PQPVSLGWIIIRTPLATNSSFRG*KHMPLT Trigger: TGTGAGCGGCATGTGCTTCCAGCCTCTGAAACTGCT...ATTAGTTGCTAATGGTGTTCTTATAATTATCCACCCCAAGGATACTGGTTGGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110934.9 |
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| CDS-3UTR GCA 90 bp | CCCCAACCAGTATCCTTGGGGTGGATAATTATAAGAACACCATTAGCAACTAATCTTCCTGGAGCTCCATaGTCAGCAGCTTACACACTT | + |
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Preference number: 4 (lower is better) Translates to: PQPVSLGWIIIRTPLATNLPGAP*SAAYTL Trigger: AAGTGTGTAAGCTGCTGAGCATGGAGCTCCAGGAAG...ATTAGTTGCTAATGGTGTTCTTATAATTATCCACCCCAAGGATACTGGTTGGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110934.9 |
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| CDS-3UTR CCA 90 bp | TTTATTTTCCTGATACAGGGGCTCAAGGAGACCAAGATGGTCTTGAGCTCGCTAGATTGCCTGAAGTCTTaGTTATCTCTTCTTCTTCTT | + |
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Preference number: 4 (lower is better) Translates to: FIFLIQGLKETKMVLSSLDCLKS*LSLLLL Trigger: AAGAAGAAGAAGAGATAACCAAGACTTCAGGCAATC...TAGCGAGCTCAAGACCATCTTGGTCTCCTTGAGCCCCTGTATCAGGAAAATAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110934.9 |
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| 3UTR CAA 72 bp | GGTATACGGCCTCATGTTTGCAGTGTATATTGGTTCTaGAGGGTCTCTTTTTGGCTTCTTACTTTAAGACAG | + |
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Preference number: 4 (lower is better) Translates to: GIRPHVCSVYWF*RVSFWLLTLRQ Trigger: CTGTCTTAAAGTAAGAAGCCAAAAAGAGACCCTCAAGAACCAATATACACTGCAAACATGAGGCCGTATACC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000110934.9 |
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| CDS GCA 90 bp | CTAGCCGCGTCTCAGAGAGGCTGTAAGGCACGTGTCTCTTCCTCTTaGCAGTGTCTAGCACCTGACCCAGCTCCAGCACTTCTCGGGATC | + |
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Preference number: 5 (lower is better) Translates to: LAASQRGCKARVSSS*QCLAPDPAPALLGI Trigger: GATCCCGAGAAGTGCTGGAGCTGGGTCAGGTGCTAGACACTGGCAAGAGGAAGAGACACGTGCCTTACAGCCTCTCTGAGACGCGGCTAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110932.2 ENSMUST00000110934.9 |
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| CDS CCA 90 bp | AGCTCCAGCACTTCTCGGGATCGGCCAGTTCGACTCAACGCTTCCTaGAGCTCCATGCTCAGCAGCTTACACACTTCGCATTTGCTGGGC | + |
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Preference number: 5 (lower is better) Translates to: SSSTSRDRPVRLNAS*SSMLSSLHTSHLLG Trigger: GCCCAGCAAATGCGAAGTGTGTAAGCTGCTGAGCATGGAGCTCCAGGAAGCGTTGAGTCGAACTGGCCGATCCCGAGAAGTGCTGGAGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110934.9 |
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| CDS GCA 90 bp | CTTCTCGGGATCGGCCAGTTCGACTCAACGCTTCCTGGAGCTCCATaGTCAGCAGCTTACACACTGGGAGTAAAGAGATGCTCGAGGGGA | + |
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Preference number: 5 (lower is better) Translates to: LLGIGQFDSTLPGAP*SAAYTLGVKRCSRG Trigger: TCCCCTCGAGCATCTCTTTACTCCCAGTGTGTAAGCTGCTGAGCATGGAGCTCCAGGAAGCGTTGAGTCGAACTGGCCGATCCCGAGAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110932.2 |
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| CDS GCA 90 bp | GTCATCTTCCTCCTCTTTTGTCGCCTCAGCCCAAGCACCGTACGCTaGCAGGATGAAAAGCAGTATCTCCAGCCGCACAGGTCCCATGAT | + |
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Preference number: 5 (lower is better) Translates to: VIFLLFCRLSPSTVR*QDEKQYLQPHRSHD Trigger: ATCATGGGACCTGTGCGGCTGGAGATACTGCTTTTCATCCTGGCAGCGTACGGTGCTTGGGCTGAGGCGACAAAAGAGGAGGAAGATGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110934.9 |
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| CDS CCA 90 bp | AGCTCCAGCACTTCTCGGGATCGGCCAGTTCGACTCAACGCTTCCTaGAGCTCCATGCTCAGCAGCTTACACACTGGGAGTAAAGAGATG | + |
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Preference number: 5 (lower is better) Translates to: SSSTSRDRPVRLNAS*SSMLSSLHTGSKEM Trigger: CATCTCTTTACTCCCAGTGTGTAAGCTGCTGAGCATGGAGCTCCAGGAAGCGTTGAGTCGAACTGGCCGATCCCGAGAAGTGCTGGAGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110932.2 |
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| CDS GCA 90 bp | CCTGGAGCTCCATGCTCAGCAGCTTACACACTGGGAGTAAAGAGATaGTCGAGGGGAATGAAGAAGACAAGCAACCCACCAGACAAGCAA | + |
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Preference number: 5 (lower is better) Translates to: PGAPCSAAYTLGVKR*SRGMKKTSNPPDKQ Trigger: TTGCTTGTCTGGTGGGTTGCTTGTCTTCTTCATTCCCCTCGAGCATCTCTTTACTCCCAGTGTGTAAGCTGCTGAGCATGGAGCTCCAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110932.2 |
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| CDS-3UTR CAA 90 bp | TTTATTTTCCTGATACAGGGGCTCAAGGAGACCAAGATGGTCTTGAGCTCGCTACATCTTCCTCCTCTTTaGTCGCCTCAGCCCAAGCAC | + |
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Preference number: 5 (lower is better) Translates to: FIFLIQGLKETKMVLSSLHLPPL*SPQPKH Trigger: GTGCTTGGGCTGAGGCGACAAAAGAGGAGGAAGATG...TAGCGAGCTCAAGACCATCTTGGTCTCCTTGAGCCCCTGTATCAGGAAAATAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110934.9 |
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| CDS-3UTR CAA 90 bp | TTAAGTGGCTGCATGTGGTTCAACCCTGAAGGCAAAACTTGCTTCTGCTTCTTCGTCTCACACTGCTTCTaGAGGAATGTGACCTCCACA | + |
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Preference number: 5 (lower is better) Translates to: LSGCMWFNPEGKTCFCFFVSHCF*RNVTST Trigger: TGTGGAGGTCACATTCCTCAAGAAGCAGTGTGAGAC...GAAGAAGCAGAAGCAAGTTTTGCCTTCAGGGTTGAACCACATGCAGCCACTTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110934.9 |
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| CDS-3UTR CAA 90 bp | CCTGTTGCCATTCTGGGTCCCCAGGATCATAGCCGAGATCATACCAAGAAGACAGGATTGCCTGAAGTCTaGGTTATCTCTTCTTCTTCT | + |
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Preference number: 5 (lower is better) Translates to: PVAILGPQDHSRDHTKKTGLPEV*VISSSS Trigger: AGAAGAAGAAGAGATAACCAAGACTTCAGGCAATCC...TGTCTTCTTGGTATGATCTCGGCTATGATCCTGGGGACCCAGAATGGCAACAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110934.9 |
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| CDS-3UTR CAA 90 bp | CCCCAACCAGTATCCTTGGGGTGGATAATTATAAGAACACCATTAGCAACTAATTCTTCTGGGTCATGCTaGGGATTGCCTGAAGTCTTG | + |
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Preference number: 5 (lower is better) Translates to: PQPVSLGWIIIRTPLATNSSGSC*GLPEVL Trigger: CAAGACTTCAGGCAATCCCAAGCATGACCCAGAAGA...ATTAGTTGCTAATGGTGTTCTTATAATTATCCACCCCAAGGATACTGGTTGGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110934.9 |
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| CDS TCA 72 bp | GGCACGTGTCTCTTCCTCTTGCCAGTGTCTAGCACCTaGCCCAGCTCCAGCACTTCTCGGGATCGGCCAGTT | + |
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Preference number: 6 (lower is better) Translates to: GTCLFLLPVSST*PSSSTSRDRPV Trigger: AACTGGCCGATCCCGAGAAGTGCTGGAGCTGGGTCAGGTGCTAGACACTGGCAAGAGGAAGAGACACGTGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110932.2 ENSMUST00000110934.9 |
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| CDS GCA 72 bp | TCCCGTAGACAAGCAGTTTCAGAGGCTGGAAGCACATaGCGCTCACAGAGAAAATGCTGGAGGGGCTGCTCC | + |
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Preference number: 6 (lower is better) Translates to: SRRQAVSEAGST*RSQRKCWRGCS Trigger: GGAGCAGCCCCTCCAGCATTTTCTCTGTGAGCGGCATGTGCTTCCAGCCTCTGAAACTGCTTGTCTACGGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110934.9 |
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| CDS CCA 72 bp | ACTTCTCGGGATCGGCCAGTTCGACTCAACGCTTCCTaGAGCTCCATGCTCAGCAGCTTACACACTGGGAGT | + |
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Preference number: 6 (lower is better) Translates to: TSRDRPVRLNAS*SSMLSSLHTGS Trigger: ACTCCCAGTGTGTAAGCTGCTGAGCATGGAGCTCCAGGAAGCGTTGAGTCGAACTGGCCGATCCCGAGAAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110932.2 |
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| CDS GCA 72 bp | ATCGGCCAGTTCGACTCAACGCTTCCTGGAGCTCCATaGTCAGCAGCTTACACACTTCGCATTTGCTGGGCA | + |
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Preference number: 6 (lower is better) Translates to: IGQFDSTLPGAP*SAAYTLRICWA Trigger: TGCCCAGCAAATGCGAAGTGTGTAAGCTGCTGAGCATGGAGCTCCAGGAAGCGTTGAGTCGAACTGGCCGAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110934.9 |
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| CDS GCA 72 bp | TCTCAGAGAGGCTGTAAGGCACGTGTCTCTTCCTCTTaGCAGTGTCTAGCACCTGACCCAGCTCCAGCACTT | + |
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Preference number: 6 (lower is better) Translates to: SQRGCKARVSSS*QCLAPDPAPAL Trigger: AAGTGCTGGAGCTGGGTCAGGTGCTAGACACTGGCAAGAGGAAGAGACACGTGCCTTACAGCCTCTCTGAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110932.2 ENSMUST00000110934.9 |
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| CDS CCA 72 bp | ACTTCTCGGGATCGGCCAGTTCGACTCAACGCTTCCTaGAGCTCCATGCTCAGCAGCTTACACACTTCGCAT | + |
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Preference number: 6 (lower is better) Translates to: TSRDRPVRLNAS*SSMLSSLHTSH Trigger: ATGCGAAGTGTGTAAGCTGCTGAGCATGGAGCTCCAGGAAGCGTTGAGTCGAACTGGCCGATCCCGAGAAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110934.9 |
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| CDS GCA 72 bp | ATCGGCCAGTTCGACTCAACGCTTCCTGGAGCTCCATaGTCAGCAGCTTACACACTGGGAGTAAAGAGATGC | + |
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Preference number: 6 (lower is better) Translates to: IGQFDSTLPGAP*SAAYTLGVKRC Trigger: GCATCTCTTTACTCCCAGTGTGTAAGCTGCTGAGCATGGAGCTCCAGGAAGCGTTGAGTCGAACTGGCCGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110932.2 |
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| CDS GCA 72 bp | CCATGCTCAGCAGCTTACACACTGGGAGTAAAGAGATaGTCGAGGGGAATGAAGAAGACAAGCAACCCACCA | + |
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Preference number: 6 (lower is better) Translates to: PCSAAYTLGVKR*SRGMKKTSNPP Trigger: TGGTGGGTTGCTTGTCTTCTTCATTCCCCTCGAGCATCTCTTTACTCCCAGTGTGTAAGCTGCTGAGCATGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110932.2 |
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| CDS CCA 72 bp | GCTCCATGCTCAGCAGCTTACACACTTCGCATTTGCTaGGCAAACGTTCTGTGTCATCTTCCTCCTCTTTTG | + |
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Preference number: 6 (lower is better) Translates to: APCSAAYTLRIC*ANVLCHLPPLL Trigger: CAAAAGAGGAGGAAGATGACACAGAACGTTTGCCCAGCAAATGCGAAGTGTGTAAGCTGCTGAGCATGGAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110934.9 |
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