RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CNOT2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020166

Ensembl transcript IDs: ENSMUST00000020374.6, ENSMUST00000105265.8, ENSMUST00000105267.8, ENSMUST00000164088.8, ENSMUST00000167706.8, ENSMUST00000168036.8, ENSMUST00000169507.8, ENSMUST00000169576.8, ENSMUST00000169921.8, ENSMUST00000218490.2, ENSMUST00000218744.2

Found 462 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ATTTGCTACTCTGGGGATGGGAAAGCTCAGAGCTGGAGGCTGAAGTaGAGAAGGAAAGGTTGGAGGGTGAGCCATGGCACCAGCCCCACA +
Preference number: 1 (lower is better)
Translates to: ICYSGDGKAQSWRLK*RRKGWRVSHGTSPT
Trigger: TGTGGGGCTGGTGCCATGGCTCACCCTCCAACCTTTCCTTCTTCACTTCAGCCTCCAGCTCTGAGCTTTCCCATCCCCAGAGTAGCAAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR CCA 90 bp GGTCCCCCGCTCATACGTGTTGGTTTTCATTGTTGGCTCCATGCCTaGTGCCCTGGTAATCCATACCCGCTCCTCCTTGTGGTATCTCCA +
Preference number: 1 (lower is better)
Translates to: GPPLIRVGFHCWLHA*CPGNPYPLLLVVSP
Trigger: TGGAGATACCACAAGGAGGAGCGGGTATGGATTACCAGGGCACCAGGCATGGAGCCAACAATGAAAACCAACACGTATGAGCGGGGGACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR GCA 90 bp CCCCCGCTCATACGTGTTGGTTTTCATTGTTGGCTCCATGCCTGGTaGCCTGGTAATCCATACCCGCTCCTCCTTGTGGTATCTCCAATC +
Preference number: 1 (lower is better)
Translates to: PPLIRVGFHCWLHAW*PGNPYPLLLVVSPI
Trigger: GATTGGAGATACCACAAGGAGGAGCGGGTATGGATTACCAGGGCACCAGGCATGGAGCCAACAATGAAAACCAACACGTATGAGCGGGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR GCA 90 bp CGTAAGGAGCTCTTCCAGCCAAGGGGTTTATTAATGGAGTTGGGTTaGCGCTCCCTTCCCTTCTATTCCGGTCAGCTAACGCTGGGAAAT +
Preference number: 1 (lower is better)
Translates to: RKELFQPRGLLMELG*RSLPFYSGQLTLGN
Trigger: ATTTCCCAGCGTTAGCTGACCGGAATAGAAGGGAAGGGAGCGGCAACCCAACTCCATTAATAAACCCCTTGGCTGGAAGAGCTCCTTACG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR CCA 90 bp GGCTCCATGCCTGGTGCCCTGGTAATCCATACCCGCTCCTCCTTGTaGTATCTCCAATCACGGTTAAAAAGTTCTACCGCAGCTAAGAGT +
Preference number: 1 (lower is better)
Translates to: GSMPGALVIHTRSSL*YLQSRLKSSTAAKS
Trigger: ACTCTTAGCTGCGGTAGAACTTTTTAACCGTGATTGGAGATACCACAAGGAGGAGCGGGTATGGATTACCAGGGCACCAGGCATGGAGCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR TCA 90 bp ATGGAGGCGTGTGAAGTGACATTGTTGGTACCCCTGTTGTTGGCGTaGCGTGGCTCGGTAACTGAGTGCCTTGTGATAAGCTGCGATTTA +
Preference number: 1 (lower is better)
Translates to: MEACEVTLLVPLLLA*RGSVTECLVISCDL
Trigger: TAAATCGCAGCTTATCACAAGGCACTCAGTTACCGAGCCACGTCACGCCAACAACAGGGGTACCAACAATGTCACTTCACACGCCTCCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000169507.8
ENSMUST00000169576.8
ENSMUST00000218490.2
3UTR CCA 90 bp AAAGAAATAGTAGGTCCCCCGCTCATACGTGTTGGTTTTCATTGTTaGCTCCATGCCTGGTGCCCTGGTAATCCATACCCGCTCCTCCTT +
Preference number: 1 (lower is better)
Translates to: KEIVGPPLIRVGFHC*LHAWCPGNPYPLLL
Trigger: AAGGAGGAGCGGGTATGGATTACCAGGGCACCAGGCATGGAGCCAACAATGAAAACCAACACGTATGAGCGGGGGACCTACTATTTCTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR GCA 90 bp GATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTaGAGTTATGTCGAGTATTGTGCTGAGACAGCCATACCCCAAGAA +
Preference number: 1 (lower is better)
Translates to: DPQGIKTRVPEPHQL*SYVEYCAETAIPQE
Trigger: TTCTTGGGGTATGGCTGTCTCAGCACAATACTCGACATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169576.8
ENSMUST00000169921.8
3UTR GCA 90 bp ACTGAGTGCCTTGTGATAAGCTGCGATTTAACTGAGGGGTATTGTTaGTCATCCCCCTCATTGGAAGGCCTAGTGCACTTTGTTGCCCGT +
Preference number: 1 (lower is better)
Translates to: TECLVISCDLTEGYC*SSPSLEGLVHFVAR
Trigger: ACGGGCAACAAAGTGCACTAGGCCTTCCAATGAGGGGGATGAGCAACAATACCCCTCAGTTAAATCGCAGCTTATCACAAGGCACTCAGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000169507.8
ENSMUST00000169576.8
ENSMUST00000218490.2
3UTR TCA 90 bp CCTGAACTGCTCATGCTATTTGTCCTGCTAGGAATTCCAATGCCCTaGCCAACCTGGGAGTGGTTCATCATATTCCTAGGATTCATAGGC +
Preference number: 1 (lower is better)
Translates to: PELLMLFVLLGIPMP*PTWEWFIIFLGFIG
Trigger: GCCTATGAATCCTAGGAATATGATGAACCACTCCCAGGTTGGTCAGGGCATTGGAATTCCTAGCAGGACAAATAGCATGAGCAGTTCAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000169507.8
ENSMUST00000169576.8
ENSMUST00000218490.2
3UTR TCA 90 bp AATGTTAACAGGCCAATCATTCCAAATTGGTCCGTCACCATCCCTTaGGGAATGTTAGTAACTCGACCATCAGGTAACACCTGGATCCCC +
Preference number: 1 (lower is better)
Translates to: NVNRPIIPNWSVTIP*GMLVTRPSGNTWIP
Trigger: GGGGATCCAGGTGTTACCTGATGGTCGAGTTACTAACATTCCTCAAGGGATGGTGACGGACCAATTTGGAATGATTGGCCTGTTAACATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR TCA 90 bp CTCATCATGGTAGTCGCTGTCCACCCCCTCTACAAACTTCTTTCTTaGAGCACCAAACATGCTGTTTGTCACCTGTGCAACTTCTTTCAA +
Preference number: 1 (lower is better)
Translates to: LIMVVAVHPLYKLLS*STKHAVCHLCNFFQ
Trigger: TTGAAAGAAGTTGCACAGGTGACAAACAGCATGTTTGGTGCTTCAAGAAAGAAGTTTGTAGAGGGGGTGGACAGCGACTACCATGATGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR TCA 90 bp GAAAAGGGAAGTCTTTTTAGAAGGCTTGCTGAGCAGGGTTGTAGTTaGAGGTGGATGGCAGGTGAGGCCGCTCTTCTAATTTGTCATATT +
Preference number: 1 (lower is better)
Translates to: EKGSLFRRLAEQGCS*RWMAGEAALLICHI
Trigger: AATATGACAAATTAGAAGAGCGGCCTCACCTGCCATCCACCTTCAACTACAACCCTGCTCAGCAAGCCTTCTAAAAAGACTTCCCTTTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR GCA 90 bp AATCCAGACATACTGTTCACAGTAAAAGGCTGTCGAGAAGGCTGTTaGTTTGGCATACATATTATGCTTGGCGAGCTTCTGTTGGGGCTA +
Preference number: 1 (lower is better)
Translates to: NPDILFTVKGCREGC*FGIHIMLGELLLGL
Trigger: TAGCCCCAACAGAAGCTCGCCAAGCATAATATGTATGCCAAAGCAACAGCCTTCTCGACAGCCTTTTACTGTGAACAGTATGTCTGGATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169507.8
ENSMUST00000169576.8
3UTR GCA 90 bp TGTACACATTTATTACAAAATCGTAACAAAGACTGGACAGTGTTTTaGTCATTCTGGATGAAGCTCAGTTACAGCGCAGCCCTGGAGCCC +
Preference number: 1 (lower is better)
Translates to: CTHLLQNRNKDWTVF*SFWMKLSYSAALEP
Trigger: GGGCTCCAGGGCTGCGCTGTAACTGAGCTTCATCCAGAATGAGCAAAACACTGTCCAGTCTTTGTTACGATTTTGTAATAAATGTGTACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169576.8
3UTR-3UTR CCA 90 bp TTGCTCATTCTGGATGAAGCTCAGTTACAGCGCAGCCCTGGAGCCCCAGAGACTGTTACAGCGCAGCCCTaGAGCCCCAGAGACTGTGGC +
Preference number: 2 (lower is better)
Translates to: LLILDEAQLQRSPGAPETVTAQP*SPRDCG
Trigger: GCCACAGTCTCTGGGGCTCCAGGGCTGCGCTGTAAC...AGTCTCTGGGGCTCCAGGGCTGCGCTGTAACTGAGCTTCATCCAGAATGAGCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169576.8
3UTR-3UTR CCA 90 bp CCTTTAGTGCACAGGGCGACAAAGTCCCCTGACCAGCAGTTCCAGAATGTCCCAGTTACAGCGCAGCCCTaGAGCCCCAGAGACTGTGGC +
Preference number: 2 (lower is better)
Translates to: PLVHRATKSPDQQFQNVPVTAQP*SPRDCG
Trigger: GCCACAGTCTCTGGGGCTCCAGGGCTGCGCTGTAAC...TGGGACATTCTGGAACTGCTGGTCAGGGGACTTTGTCGCCCTGTGCACTAAAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169576.8
3UTR-3UTR GCA 90 bp GCTCAGTTACAGCGCAGCCCTGGAGCCCCAGAGACTGTGGCGATCTCTACAGTCGGATTAAAACCAGGGTaGCTGAGCCACATCAGCTCT +
Preference number: 2 (lower is better)
Translates to: AQLQRSPGAPETVAISTVGLKPG*LSHISS
Trigger: AGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCC...GACTGTAGAGATCGCCACAGTCTCTGGGGCTCCAGGGCTGCGCTGTAACTGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169576.8
3UTR-3UTR TCA 90 bp TTGGCGAGCTTCTGTTGGGGCTACCTAACCCTGAACTGCTCATGCTATTTGTCCCCCCTGTTGTTGGCGTaGCGTGGCTCGGTAACTGAG +
Preference number: 2 (lower is better)
Translates to: LASFCWGYLTLNCSCYLSPLLLA*RGSVTE
Trigger: CTCAGTTACCGAGCCACGTCACGCCAACAACAGGGG...GGACAAATAGCATGAGCAGTTCAGGGTTAGGTAGCCCCAACAGAAGCTCGCCAA
56% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000169507.8
ENSMUST00000169576.8
ENSMUST00000218490.2
3UTR-3UTR CCA 90 bp TTGCTCATTCTGGATGAAGCTCAGTTACAGCGCAGCCCTGGAGCCCCAGAGACTGAGCCCCAGAGACTGTaGCGATCTCTACAGTCGGAT +
Preference number: 2 (lower is better)
Translates to: LLILDEAQLQRSPGAPETEPQRL*RSLQSD
Trigger: ATCCGACTGTAGAGATCGCCACAGTCTCTGGGGCTC...AGTCTCTGGGGCTCCAGGGCTGCGCTGTAACTGAGCTTCATCCAGAATGAGCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169576.8
3UTR-3UTR CCA 90 bp CCTTTAGTGCACAGGGCGACAAAGTCCCCTGACCAGCAGTTCCAGAATGTCCCAGAGCCCCAGAGACTGTaGCGATCTCTACAGTCGGAT +
Preference number: 2 (lower is better)
Translates to: PLVHRATKSPDQQFQNVPEPQRL*RSLQSD
Trigger: ATCCGACTGTAGAGATCGCCACAGTCTCTGGGGCTC...TGGGACATTCTGGAACTGCTGGTCAGGGGACTTTGTCGCCCTGTGCACTAAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169576.8
3UTR-3UTR CCA 90 bp CAATTGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTTGGAGGGTGAGCCATaGCACCAGCCCCACACTAGG +
Preference number: 2 (lower is better)
Translates to: QLPDPQGIKTRVPEPHQLLEGEP*HQPHTR
Trigger: CCTAGTGTGGGGCTGGTGCCATGGCTCACCCTCCAA...GAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCAATTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR-3UTR TCA 90 bp GCTCAGTTACAGCGCAGCCCTGGAGCCCCAGAGACTGTGGCGATCTCTACAGTCTTCAAACAGCCAGAGTaGATTGTCTCAGTTCACGTC +
Preference number: 2 (lower is better)
Translates to: AQLQRSPGAPETVAISTVFKQPE*IVSVHV
Trigger: GACGTGAACTGAGACAATTCACTCTGGCTGTTTGAA...GACTGTAGAGATCGCCACAGTCTCTGGGGCTCCAGGGCTGCGCTGTAACTGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169576.8
3UTR-3UTR TCA 90 bp TACCCCTGCTTGGAGATGGAGGCGTGTGAAGTGACATTGTTGGTACCCCTGTTGTTGAGACAGCTGACCTaGCGTAGATGGCGATGCCAG +
Preference number: 2 (lower is better)
Translates to: YPCLEMEACEVTLLVPLLLRQLT*RRWRCQ
Trigger: CTGGCATCGCCATCTACGTCAGGTCAGCTGTCTCAA...CAACAGGGGTACCAACAATGTCACTTCACACGCCTCCATCTCCAAGCAGGGGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000169507.8
ENSMUST00000169576.8
ENSMUST00000218490.2
3UTR-3UTR TCA 90 bp GCTCAGTTACAGCGCAGCCCTGGAGCCCCAGAGACTGTGGCGATCTCTACAGTCGCTCATCCTTCCAAATaGAATACGAGAAGGATCTTC +
Preference number: 2 (lower is better)
Translates to: AQLQRSPGAPETVAISTVAHPSK*NTRRIF
Trigger: GAAGATCCTTCTCGTATTTCATTTGGAAGGATGAGC...GACTGTAGAGATCGCCACAGTCTCTGGGGCTCCAGGGCTGCGCTGTAACTGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169576.8
3UTR-3UTR CCA 90 bp GCTCAGTTACAGCGCAGCCCTGGAGCCCCAGAGACTGTGGCGATCTCTACAGTCGTGTTTTGCTCATTCTaGATGAAGCTCAGTTACAGC +
Preference number: 2 (lower is better)
Translates to: AQLQRSPGAPETVAISTVVFCSF*MKLSYS
Trigger: GCTGTAACTGAGCTTCATCCAGAATGAGCAAAACAC...GACTGTAGAGATCGCCACAGTCTCTGGGGCTCCAGGGCTGCGCTGTAACTGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169576.8
3UTR CAA 90 bp TTCCAACGTAAGGAGCTCTTCCAGCCAAGGGGTTTATTAATGGAGTaGGGTTGCCGCTCCCTTCCCTTCTATTCCGGTCAGCTAACGCTG +
Preference number: 2 (lower is better)
Translates to: FQRKELFQPRGLLME*GCRSLPFYSGQLTL
Trigger: CAGCGTTAGCTGACCGGAATAGAAGGGAAGGGAGCGGCAACCCAACTCCATTAATAAACCCCTTGGCTGGAAGAGCTCCTTACGTTGGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR-3UTR TCA 90 bp TGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCATGTCGAGTATTGTGCTaGGACAGCCATACCCCAAGA +
Preference number: 2 (lower is better)
Translates to: CQILKGLKPGCLSHISSACRVLC*DSHTPR
Trigger: TCTTGGGGTATGGCTGTCTCAGCACAATACTCGACA...TGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169576.8
ENSMUST00000169921.8
3UTR-3UTR GCA 90 bp AGTGTTTTGCTCATTCTGGATGAAGCTCAGTTACAGCGCAGCCCTGGAGCCCCAGGATTAAAACCAGGGTaGCTGAGCCACATCAGCTCT +
Preference number: 2 (lower is better)
Translates to: SVLLILDEAQLQRSPGAPGLKPG*LSHISS
Trigger: AGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCC...TGGGGCTCCAGGGCTGCGCTGTAACTGAGCTTCATCCAGAATGAGCAAAACACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169576.8
3UTR-3UTR TCA 90 bp TCGAGAAGGCTGTTGCTTTGGCATACATATTATGCTTGGCGAGCTTCTGTTGGGTTGAGACAGCTGACCTaGCGTAGATGGCGATGCCAG +
Preference number: 2 (lower is better)
Translates to: SRRLLLWHTYYAWRASVGLRQLT*RRWRCQ
Trigger: CTGGCATCGCCATCTACGTCAGGTCAGCTGTCTCAA...CCCAACAGAAGCTCGCCAAGCATAATATGTATGCCAAAGCAACAGCCTTCTCGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000169507.8
ENSMUST00000169576.8
ENSMUST00000218490.2
3UTR-3UTR TCA 90 bp CTGACCAGCAGTTCCAGAATGTCCCATTTTCATATATTGCATCCATGCACACCTCCCCTGTTGTTGGCGTaGCGTGGCTCGGTAACTGAG +
Preference number: 2 (lower is better)
Translates to: LTSSSRMSHFHILHPCTPPLLLA*RGSVTE
Trigger: CTCAGTTACCGAGCCACGTCACGCCAACAACAGGGG...AGGTGTGCATGGATGCAATATATGAAAATGGGACATTCTGGAACTGCTGGTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR-3UTR TCA 90 bp GAGCTTCTGTTGGGGCTACCTAACCCTGAACTGCTCATGCTATTTGTCCTGCTAGGAGATGGAGGCGTGTaGAGTGACATTGTTGGTACC +
Preference number: 2 (lower is better)
Translates to: ELLLGLPNPELLMLFVLLGDGGV*SDIVGT
Trigger: GGTACCAACAATGTCACTTCACACGCCTCCATCTCC...TAGCAGGACAAATAGCATGAGCAGTTCAGGGTTAGGTAGCCCCAACAGAAGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000169507.8
ENSMUST00000169576.8
ENSMUST00000218490.2
3UTR-3UTR GCA 90 bp CATGCCTGGTGCCCTGGTAATCCATACCCGCTCCTCCTTGTGGTATCTCCAATCGAGCCACATCAGCTCTaGAGTTATGTCGAGTATTGT +
Preference number: 2 (lower is better)
Translates to: HAWCPGNPYPLLLVVSPIEPHQL*SYVEYC
Trigger: ACAATACTCGACATAACTGCAGAGCTGATGTGGCTC...GATTGGAGATACCACAAGGAGGAGCGGGTATGGATTACCAGGGCACCAGGCATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR-3UTR GCA 90 bp TTGCTCATTCTGGATGAAGCTCAGTTACAGCGCAGCCCTGGAGCCCCAGAGACTGACTGGACAGTGTTTTaGTCATTCTGGATGAAGCTC +
Preference number: 2 (lower is better)
Translates to: LLILDEAQLQRSPGAPETDWTVF*SFWMKL
Trigger: GAGCTTCATCCAGAATGAGCAAAACACTGTCCAGTC...AGTCTCTGGGGCTCCAGGGCTGCGCTGTAACTGAGCTTCATCCAGAATGAGCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169576.8
3UTR-3UTR TCA 90 bp GTAAGCCAATTGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATTGTCGAGTATTGTGCTaGGACAGCCATACCCCAAGA +
Preference number: 2 (lower is better)
Translates to: VSQLPDPQGIKTRVPEPHCRVLC*DSHTPR
Trigger: TCTTGGGGTATGGCTGTCTCAGCACAATACTCGACA...ATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCAATTGGCTTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169576.8
ENSMUST00000169921.8
3UTR-3UTR TCA 90 bp TTTGGCATACATATTATGCTTGGCGAGCTTCTGTTGGGGCTACCTAACCCTGAAGGAATTCCAATGCCCTaGCCAACCTGGGAGTGGTTC +
Preference number: 2 (lower is better)
Translates to: FGIHIMLGELLLGLPNPEGIPMP*PTWEWF
Trigger: GAACCACTCCCAGGTTGGTCAGGGCATTGGAATTCC...TTCAGGGTTAGGTAGCCCCAACAGAAGCTCGCCAAGCATAATATGTATGCCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000169507.8
ENSMUST00000169576.8
ENSMUST00000218490.2
3UTR-3UTR CCA 90 bp CGAGAAGGCTGTTGCTTTGGCATACATATTATGCTTGGCGAGCTTCTGTTGGGGCAAAATACCCCTGCTTaGAGATGGAGGCGTGTGAAG +
Preference number: 2 (lower is better)
Translates to: REGCCFGIHIMLGELLLGQNTPA*RWRRVK
Trigger: CTTCACACGCCTCCATCTCCAAGCAGGGGTATTTTG...CCCCAACAGAAGCTCGCCAAGCATAATATGTATGCCAAAGCAACAGCCTTCTCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000169507.8
ENSMUST00000169576.8
ENSMUST00000218490.2
3UTR-3UTR TCA 90 bp TTTGGCATACATATTATGCTTGGCGAGCTTCTGTTGGGGCTACCTAACCCTGAATGGAGGCGTGTGAAGTaGCATTGTTGGTACCCCTGT +
Preference number: 2 (lower is better)
Translates to: FGIHIMLGELLLGLPNPEWRRVK*HCWYPC
Trigger: ACAGGGGTACCAACAATGTCACTTCACACGCCTCCA...TTCAGGGTTAGGTAGCCCCAACAGAAGCTCGCCAAGCATAATATGTATGCCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000169507.8
ENSMUST00000169576.8
ENSMUST00000218490.2
3UTR-3UTR TCA 90 bp AGACATACTGTTCACAGTAAAAGGCTGTCGAGAAGGCTGTTGCTTTGGCATACAGGAATTCCAATGCCCTaGCCAACCTGGGAGTGGTTC +
Preference number: 2 (lower is better)
Translates to: RHTVHSKRLSRRLLLWHTGIPMP*PTWEWF
Trigger: GAACCACTCCCAGGTTGGTCAGGGCATTGGAATTCC...TGTATGCCAAAGCAACAGCCTTCTCGACAGCCTTTTACTGTGAACAGTATGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169507.8
ENSMUST00000169576.8
3UTR-3UTR TCA 90 bp GGCCCTTTAGTGCACAGGGCGACAAAGTCCCCTGACCAGCAGTTCCAGAATGTCTTCATTCCAAATGCCTaGTTCCTGTTCATTCCAAAT +
Preference number: 2 (lower is better)
Translates to: GPLVHRATKSPDQQFQNVFIPNA*FLFIPN
Trigger: ATTTGGAATGAACAGGAATCAGGCATTTGGAATGAA...GACATTCTGGAACTGCTGGTCAGGGGACTTTGTCGCCCTGTGCACTAAAGGGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR-3UTR GCA 90 bp GGCCCTTTAGTGCACAGGGCGACAAAGTCCCCTGACCAGCAGTTCCAGAATGTCAGACCCAAGTCTGTCTaGTGGCAAAAAGAAAATAAA +
Preference number: 2 (lower is better)
Translates to: GPLVHRATKSPDQQFQNVRPKSV*WQKENK
Trigger: TTTATTTTCTTTTTGCCAGCAGACAGACTTGGGTCT...GACATTCTGGAACTGCTGGTCAGGGGACTTTGTCGCCCTGTGCACTAAAGGGCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169576.8
3UTR-3UTR GCA 90 bp GAGCTTCTGTTGGGGCTACCTAACCCTGAACTGCTCATGCTATTTGTCCTGCTACCTAGTGCACTTTGTTaGCCGTATAAACTTGCCCCA +
Preference number: 2 (lower is better)
Translates to: ELLLGLPNPELLMLFVLLPSALC*PYKLAP
Trigger: TGGGGCAAGTTTATACGGGCAACAAAGTGCACTAGG...TAGCAGGACAAATAGCATGAGCAGTTCAGGGTTAGGTAGCCCCAACAGAAGCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000169507.8
ENSMUST00000169576.8
ENSMUST00000218490.2
3UTR-3UTR GCA 90 bp GCTTTGGCATACATATTATGCTTGGCGAGCTTCTGTTGGGGCTACCTAACCCTGCCTAGTGCACTTTGTTaGCCGTATAAACTTGCCCCA +
Preference number: 2 (lower is better)
Translates to: ALAYILCLASFCWGYLTLPSALC*PYKLAP
Trigger: TGGGGCAAGTTTATACGGGCAACAAAGTGCACTAGG...CAGGGTTAGGTAGCCCCAACAGAAGCTCGCCAAGCATAATATGTATGCCAAAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000169507.8
ENSMUST00000169576.8
ENSMUST00000218490.2
3UTR-3UTR GCA 90 bp GGCTGTTGCTTTGGCATACATATTATGCTTGGCGAGCTTCTGTTGGGGCTACCTACTGAGGGGTATTGTTaGTCATCCCCCTCATTGGAA +
Preference number: 2 (lower is better)
Translates to: GCCFGIHIMLGELLLGLPTEGYC*SSPSLE
Trigger: TTCCAATGAGGGGGATGAGCAACAATACCCCTCAGT...AGGTAGCCCCAACAGAAGCTCGCCAAGCATAATATGTATGCCAAAGCAACAGCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000169507.8
ENSMUST00000169576.8
ENSMUST00000218490.2
3UTR-3UTR GCA 90 bp AATAGTAGGTCCCCCGCTCATACGTGTTGGTTTTCATTGTTGGCTCCATGCCTGTTAATGGAGTTGGGTTaGCGCTCCCTTCCCTTCTAT +
Preference number: 2 (lower is better)
Translates to: NSRSPAHTCWFSLLAPCLLMELG*RSLPFY
Trigger: ATAGAAGGGAAGGGAGCGGCAACCCAACTCCATTAA...CAGGCATGGAGCCAACAATGAAAACCAACACGTATGAGCGGGGGACCTACTATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR-3UTR CCA 90 bp CATGCCTGGTGCCCTGGTAATCCATACCCGCTCCTCCTTGTGGTATCTCCAATCTTGGATCTTTATAGCTaGAACCAGGTAATGCTGGAA +
Preference number: 2 (lower is better)
Translates to: HAWCPGNPYPLLLVVSPILDLYS*NQVMLE
Trigger: TTCCAGCATTACCTGGTTCCAGCTATAAAGATCCAA...GATTGGAGATACCACAAGGAGGAGCGGGTATGGATTACCAGGGCACCAGGCATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR CAA 90 bp GAAGGCTGTTGCTTTGGCATACATATTATGCTTGGCGAGCTTCTGTaGGGGCTACCTAACCCTGAACTGCTCATGCTATTTGTCCTGCTA +
Preference number: 2 (lower is better)
Translates to: EGCCFGIHIMLGELL*GLPNPELLMLFVLL
Trigger: TAGCAGGACAAATAGCATGAGCAGTTCAGGGTTAGGTAGCCCCAACAGAAGCTCGCCAAGCATAATATGTATGCCAAAGCAACAGCCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000169507.8
ENSMUST00000169576.8
ENSMUST00000218490.2
3UTR-3UTR TCA 90 bp CATTCCAAATCCAGACATACTGTTCACAGTAAAAGGCTGTCGAGAAGGCTGTTGACGTGGCTCGGTAACTaGGTGCCTTGTGATAAGCTG +
Preference number: 2 (lower is better)
Translates to: HSKSRHTVHSKRLSRRLLTWLGN*VPCDKL
Trigger: CAGCTTATCACAAGGCACTCAGTTACCGAGCCACGT...CAACAGCCTTCTCGACAGCCTTTTACTGTGAACAGTATGTCTGGATTTGGAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169507.8
ENSMUST00000169576.8
3UTR-3UTR TCA 90 bp GGAGTGGTTCATCATATTCCTAGGATTCATAGGCAAAATACCCCTGCTTGGAGAACGTGGCTCGGTAACTaGGTGCCTTGTGATAAGCTG +
Preference number: 2 (lower is better)
Translates to: GVVHHIPRIHRQNTPAWRTWLGN*VPCDKL
Trigger: CAGCTTATCACAAGGCACTCAGTTACCGAGCCACGT...TCTCCAAGCAGGGGTATTTTGCCTATGAATCCTAGGAATATGATGAACCACTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000169507.8
ENSMUST00000169576.8
ENSMUST00000218490.2
3UTR-3UTR TCA 90 bp AGTAAAAGGCTGTCGAGAAGGCTGTTGCTTTGGCATACATATTATGCTTGGCGAGGAGATGGAGGCGTGTaGAGTGACATTGTTGGTACC +
Preference number: 2 (lower is better)
Translates to: SKRLSRRLLLWHTYYAWRGDGGV*SDIVGT
Trigger: GGTACCAACAATGTCACTTCACACGCCTCCATCTCC...TCGCCAAGCATAATATGTATGCCAAAGCAACAGCCTTCTCGACAGCCTTTTACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000169507.8
ENSMUST00000169576.8
ENSMUST00000218490.2
3UTR-3UTR GCA 90 bp CCTTTAGTGCACAGGGCGACAAAGTCCCCTGACCAGCAGTTCCAGAATGTCCCACATATATTGCATCCATaGACACCTCCTAAAAATGAG +
Preference number: 2 (lower is better)
Translates to: PLVHRATKSPDQQFQNVPHILHP*TPPKNE
Trigger: CTCATTTTTAGGAGGTGTGCATGGATGCAATATATG...TGGGACATTCTGGAACTGCTGGTCAGGGGACTTTGTCGCCCTGTGCACTAAAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169576.8
3UTR-3UTR GCA 90 bp TCGAGAAGGCTGTTGCTTTGGCATACATATTATGCTTGGCGAGCTTCTGTTGGGCCTAGTGCACTTTGTTaGCCGTATAAACTTGCCCCA +
Preference number: 2 (lower is better)
Translates to: SRRLLLWHTYYAWRASVGPSALC*PYKLAP
Trigger: TGGGGCAAGTTTATACGGGCAACAAAGTGCACTAGG...CCCAACAGAAGCTCGCCAAGCATAATATGTATGCCAAAGCAACAGCCTTCTCGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000169507.8
ENSMUST00000169576.8
ENSMUST00000218490.2
3UTR-3UTR GCA 90 bp TGCCTTGTGATAAGCTGCGATTTAACTGAGGGGTATTGTTGCTCATCCCCCTCAACTGAGGGGTATTGTTaGTCATCCCCCTCATTGGAA +
Preference number: 2 (lower is better)
Translates to: CLVISCDLTEGYCCSSPSTEGYC*SSPSLE
Trigger: TTCCAATGAGGGGGATGAGCAACAATACCCCTCAGT...TGAGGGGGATGAGCAACAATACCCCTCAGTTAAATCGCAGCTTATCACAAGGCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000169507.8
ENSMUST00000169576.8
ENSMUST00000218490.2
3UTR-3UTR GCA 90 bp AATGCCCTGACCAACCTGGGAGTGGTTCATCATATTCCTAGGATTCATAGGCAAGGCTCGGTAACTGAGTaGCTTGTGATAAGCTGCGAT +
Preference number: 2 (lower is better)
Translates to: NALTNLGVVHHIPRIHRQGSVTE*LVISCD
Trigger: ATCGCAGCTTATCACAAGGCACTCAGTTACCGAGCC...TTGCCTATGAATCCTAGGAATATGATGAACCACTCCCAGGTTGGTCAGGGCATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000169507.8
ENSMUST00000169576.8
ENSMUST00000218490.2
3UTR-3UTR GCA 90 bp TACCCCTGCTTGGAGATGGAGGCGTGTGAAGTGACATTGTTGGTACCCCTGTTGGCTGTTTGTCACCTGTaGAACTTCTTTCAACATTTG +
Preference number: 2 (lower is better)
Translates to: YPCLEMEACEVTLLVPLLAVCHL*NFFQHL
Trigger: CAAATGTTGAAAGAAGTTGCACAGGTGACAAACAGC...CAACAGGGGTACCAACAATGTCACTTCACACGCCTCCATCTCCAAGCAGGGGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR-3UTR GCA 90 bp CTTGGCGAGCTTCTGTTGGGGCTACCTAACCCTGAACTGCTCATGCTATTTGTCTTGAAGCACCAAACATaGTGTTTGTCACCTGTGCAA +
Preference number: 2 (lower is better)
Translates to: LGELLLGLPNPELLMLFVLKHQT*CLSPVQ
Trigger: TTGCACAGGTGACAAACAGCATGTTTGGTGCTTCAA...GACAAATAGCATGAGCAGTTCAGGGTTAGGTAGCCCCAACAGAAGCTCGCCAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR-3UTR TCA 90 bp AGTGTTTTGCTCATTCTGGATGAAGCTCAGTTACAGCGCAGCCCTGGAGCCCCACCAATAGTGCTACAATaGACAATGCAAATTTTGTGG +
Preference number: 2 (lower is better)
Translates to: SVLLILDEAQLQRSPGAPPIVLQ*TMQILW
Trigger: CCACAAAATTTGCATTGTTCATTGTAGCACTATTGG...TGGGGCTCCAGGGCTGCGCTGTAACTGAGCTTCATCCAGAATGAGCAAAACACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169576.8
3UTR-3UTR TCA 90 bp TTGGGGCTACCTAACCCTGAACTGCTCATGCTATTTGTCCTGCTAGGAATTCCAAAGCTGCGATTTAACTaGGGGGTATTGTTGCTCATC +
Preference number: 2 (lower is better)
Translates to: LGLPNPELLMLFVLLGIPKLRFN*GVLLLI
Trigger: GATGAGCAACAATACCCCTCAGTTAAATCGCAGCTT...TGGAATTCCTAGCAGGACAAATAGCATGAGCAGTTCAGGGTTAGGTAGCCCCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000169507.8
ENSMUST00000169576.8
ENSMUST00000218490.2
3UTR-3UTR GCA 90 bp CTGACCAGCAGTTCCAGAATGTCCCATTTTCATATATTGCATCCATGCACACCTGGATTAAAACCAGGGTaGCTGAGCCACATCAGCTCT +
Preference number: 2 (lower is better)
Translates to: LTSSSRMSHFHILHPCTPGLKPG*LSHISS
Trigger: AGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCC...AGGTGTGCATGGATGCAATATATGAAAATGGGACATTCTGGAACTGCTGGTCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169576.8
3UTR-3UTR GCA 90 bp AGTGTTTTGCTCATTCTGGATGAAGCTCAGTTACAGCGCAGCCCTGGAGCCCCAAGACCCAAGTCTGTCTaGTGGCAAAAAGAAAATAAA +
Preference number: 2 (lower is better)
Translates to: SVLLILDEAQLQRSPGAPRPKSV*WQKENK
Trigger: TTTATTTTCTTTTTGCCAGCAGACAGACTTGGGTCT...TGGGGCTCCAGGGCTGCGCTGTAACTGAGCTTCATCCAGAATGAGCAAAACACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169576.8
3UTR-3UTR CCA 90 bp AGTAAAAGGCTGTCGAGAAGGCTGTTGCTTTGGCATACATATTATGCTTGGCGACAAAATACCCCTGCTTaGAGATGGAGGCGTGTGAAG +
Preference number: 2 (lower is better)
Translates to: SKRLSRRLLLWHTYYAWRQNTPA*RWRRVK
Trigger: CTTCACACGCCTCCATCTCCAAGCAGGGGTATTTTG...TCGCCAAGCATAATATGTATGCCAAAGCAACAGCCTTCTCGACAGCCTTTTACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000169507.8
ENSMUST00000169576.8
ENSMUST00000218490.2
3UTR CAA 90 bp AAATCCAGACATACTGTTCACAGTAAAAGGCTGTCGAGAAGGCTGTaGCTTTGGCATACATATTATGCTTGGCGAGCTTCTGTTGGGGCT +
Preference number: 2 (lower is better)
Translates to: KSRHTVHSKRLSRRL*LWHTYYAWRASVGA
Trigger: AGCCCCAACAGAAGCTCGCCAAGCATAATATGTATGCCAAAGCAACAGCCTTCTCGACAGCCTTTTACTGTGAACAGTATGTCTGGATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169507.8
ENSMUST00000169576.8
3UTR-3UTR TCA 90 bp TCCAAATTGGTCCGTCACCATCCCTTGAGGAATGTTAGTAACTCGACCATCAGGGCTGTCGTCATTACTTaGCGTTGGATCTTTATAGCT +
Preference number: 2 (lower is better)
Translates to: SKLVRHHPLRNVSNSTIRAVVIT*RWIFIA
Trigger: AGCTATAAAGATCCAACGTCAAGTAATGACGACAGC...CCTGATGGTCGAGTTACTAACATTCCTCAAGGGATGGTGACGGACCAATTTGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR-3UTR GCA 90 bp TATTGCATCCATGCACACCTCCTAAAAATGAGGTACAGCAGGGCAAACATTTTCGGATTAAAACCAGGGTaGCTGAGCCACATCAGCTCT +
Preference number: 2 (lower is better)
Translates to: YCIHAHLLKMRYSRANIFGLKPG*LSHISS
Trigger: AGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCC...GAAAATGTTTGCCCTGCTGTACCTCATTTTTAGGAGGTGTGCATGGATGCAATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169576.8
3UTR-3UTR GCA 90 bp TGCCTTGTGATAAGCTGCGATTTAACTGAGGGGTATTGTTGCTCATCCCCCTCATGCCTTGTGATAAGCTaGGATTTAACTGAGGGGTAT +
Preference number: 2 (lower is better)
Translates to: CLVISCDLTEGYCCSSPSCLVIS*DLTEGY
Trigger: ATACCCCTCAGTTAAATCGCAGCTTATCACAAGGCA...TGAGGGGGATGAGCAACAATACCCCTCAGTTAAATCGCAGCTTATCACAAGGCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000169507.8
ENSMUST00000169576.8
ENSMUST00000218490.2
3UTR-3UTR GCA 90 bp GAGTGGTTCATCATATTCCTAGGATTCATAGGCAAAATACCCCTGCTTGGAGATGGCTCGGTAACTGAGTaGCTTGTGATAAGCTGCGAT +
Preference number: 2 (lower is better)
Translates to: EWFIIFLGFIGKIPLLGDGSVTE*LVISCD
Trigger: ATCGCAGCTTATCACAAGGCACTCAGTTACCGAGCC...ATCTCCAAGCAGGGGTATTTTGCCTATGAATCCTAGGAATATGATGAACCACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000169507.8
ENSMUST00000169576.8
ENSMUST00000218490.2
3UTR-3UTR GCA 90 bp CTGGGAGTGGTTCATCATATTCCTAGGATTCATAGGCAAAATACCCCTGCTTGGTACCTAACCCTGAACTaGTCATGCTATTTGTCCTGC +
Preference number: 2 (lower is better)
Translates to: LGVVHHIPRIHRQNTPAWYLTLN*SCYLSC
Trigger: GCAGGACAAATAGCATGAGCAGTTCAGGGTTAGGTA...CCAAGCAGGGGTATTTTGCCTATGAATCCTAGGAATATGATGAACCACTCCCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000169507.8
ENSMUST00000169576.8
ENSMUST00000218490.2
3UTR-3UTR GCA 90 bp AATAGTAGGTCCCCCGCTCATACGTGTTGGTTTTCATTGTTGGCTCCATGCCTGCATATATTGCATCCATaGACACCTCCTAAAAATGAG +
Preference number: 2 (lower is better)
Translates to: NSRSPAHTCWFSLLAPCLHILHP*TPPKNE
Trigger: CTCATTTTTAGGAGGTGTGCATGGATGCAATATATG...CAGGCATGGAGCCAACAATGAAAACCAACACGTATGAGCGGGGGACCTACTATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR-3UTR GCA 90 bp TTGGGGCTACCTAACCCTGAACTGCTCATGCTATTTGTCCTGCTAGGAATTCCAACTTCTTTCAACATTTaGTACTCTGGGGATGGGAAA +
Preference number: 2 (lower is better)
Translates to: LGLPNPELLMLFVLLGIPTSFNI*YSGDGK
Trigger: TTTCCCATCCCCAGAGTAGCAAATGTTGAAAGAAGT...TGGAATTCCTAGCAGGACAAATAGCATGAGCAGTTCAGGGTTAGGTAGCCCCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR-3UTR CCA 90 bp GGTAATGCTGGAAAATCTTCGTTGTGTATTGAGAAGTCTTGGGATTGCTCATTTTTGCTACTCTGGGGATaGGAAAGCTCAGAGCTGGAG +
Preference number: 2 (lower is better)
Translates to: GNAGKSSLCIEKSWDCSFLLLWG*ESSELE
Trigger: CTCCAGCTCTGAGCTTTCCCATCCCCAGAGTAGCAA...AAATGAGCAATCCCAAGACTTCTCAATACACAACGAAGATTTTCCAGCATTACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR-3UTR CCA 90 bp CATACTGTTCACAGTAAAAGGCTGTCGAGAAGGCTGTTGCTTTGGCATACATATCAACATTTGCTACTCTaGGGATGGGAAAGCTCAGAG +
Preference number: 2 (lower is better)
Translates to: HTVHSKRLSRRLLLWHTYQHLLL*GWESSE
Trigger: CTCTGAGCTTTCCCATCCCCAGAGTAGCAAATGTTG...ATATGTATGCCAAAGCAACAGCCTTCTCGACAGCCTTTTACTGTGAACAGTATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR CAA 90 bp CTGGAAAATCTTCGTTGTGTATTGAGAAGTCTTGGGATTGCTCATTaGCAGGTTTTGTTACCATTCCAACGTAAGGAGCTCTTCCAGCCA +
Preference number: 2 (lower is better)
Translates to: LENLRCVLRSLGIAH*QVLLPFQRKELFQP
Trigger: TGGCTGGAAGAGCTCCTTACGTTGGAATGGTAACAAAACCTGCAAATGAGCAATCCCAAGACTTCTCAATACACAACGAAGATTTTCCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR-3UTR TCA 90 bp GAGTGGTTCATCATATTCCTAGGATTCATAGGCAAAATACCCCTGCTTGGAGATAAGCTGCGATTTAACTaGGGGGTATTGTTGCTCATC +
Preference number: 2 (lower is better)
Translates to: EWFIIFLGFIGKIPLLGDKLRFN*GVLLLI
Trigger: GATGAGCAACAATACCCCTCAGTTAAATCGCAGCTT...ATCTCCAAGCAGGGGTATTTTGCCTATGAATCCTAGGAATATGATGAACCACTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000169507.8
ENSMUST00000169576.8
ENSMUST00000218490.2
3UTR-3UTR TCA 90 bp TTGTTAAATATTCTGATGGAACATGGAAGTCTATGTCTTGAGGCCGACAAGGTGTCCGTCACCATCCCTTaGGGAATGTTAGTAACTCGA +
Preference number: 2 (lower is better)
Translates to: LLNILMEHGSLCLEADKVSVTIP*GMLVTR
Trigger: TCGAGTTACTAACATTCCTCAAGGGATGGTGACGGA...CACCTTGTCGGCCTCAAGACATAGACTTCCATGTTCCATCAGAATATTTAACAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR-3UTR TCA 90 bp TCTAAAATCTCAGGACAAGAACAGAGCATACACACTACAAACAGAAAACCCTTAACAAGTCCGTGTTTGTaGGTGTCTGGGGGACACAAT +
Preference number: 2 (lower is better)
Translates to: SKISGQEQSIHTTNRKPLTSPCL*VSGGHN
Trigger: ATTGTGTCCCCCAGACACTCACAAACACGGACTTGT...TAAGGGTTTTCTGTTTGTAGTGTGTATGCTCTGTTCTTGTCCTGAGATTTTAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000020374.6
3UTR-3UTR GCA 90 bp GAATGTCCCATTTTCATATATTGCATCCATGCACACCTCCTAAAAATGAGGTACACTGAGGGGTATTGTTaGTCATCCCCCTCATTGGAA +
Preference number: 2 (lower is better)
Translates to: ECPIFIYCIHAHLLKMRYTEGYC*SSPSLE
Trigger: TTCCAATGAGGGGGATGAGCAACAATACCCCTCAGT...GTACCTCATTTTTAGGAGGTGTGCATGGATGCAATATATGAAAATGGGACATTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR-3UTR GCA 90 bp TCTGTCAGTGTACTTGCTTGTCTTTATAGACCCAAGTCTGTCTGCTGGCAAAAATGCCTTGTGATAAGCTaGGATTTAACTGAGGGGTAT +
Preference number: 2 (lower is better)
Translates to: SVSVLACLYRPKSVCWQKCLVIS*DLTEGY
Trigger: ATACCCCTCAGTTAAATCGCAGCTTATCACAAGGCA...TTTTTGCCAGCAGACAGACTTGGGTCTATAAAGACAAGCAAGTACACTGACAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR-3UTR TCA 90 bp ATGTCCCATTTTCATATATTGCATCCATGCACACCTCCTAAAAATGAGGTACAGTTCAAACAGCCAGAGTaGATTGTCTCAGTTCACGTC +
Preference number: 2 (lower is better)
Translates to: MSHFHILHPCTPPKNEVQFKQPE*IVSVHV
Trigger: GACGTGAACTGAGACAATTCACTCTGGCTGTTTGAA...CTGTACCTCATTTTTAGGAGGTGTGCATGGATGCAATATATGAAAATGGGACAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169576.8
3UTR-3UTR GCA 90 bp AGACATACTGTTCACAGTAAAAGGCTGTCGAGAAGGCTGTTGCTTTGGCATACAAGACCCAAGTCTGTCTaGTGGCAAAAAGAAAATAAA +
Preference number: 2 (lower is better)
Translates to: RHTVHSKRLSRRLLLWHTRPKSV*WQKENK
Trigger: TTTATTTTCTTTTTGCCAGCAGACAGACTTGGGTCT...TGTATGCCAAAGCAACAGCCTTCTCGACAGCCTTTTACTGTGAACAGTATGTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR-3UTR GCA 90 bp GAGTGGTTCATCATATTCCTAGGATTCATAGGCAAAATACCCCTGCTTGGAGATTGTCGAGAAGGCTGTTaGTTTGGCATACATATTATG +
Preference number: 2 (lower is better)
Translates to: EWFIIFLGFIGKIPLLGDCREGC*FGIHIM
Trigger: CATAATATGTATGCCAAAGCAACAGCCTTCTCGACA...ATCTCCAAGCAGGGGTATTTTGCCTATGAATCCTAGGAATATGATGAACCACTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000169507.8
ENSMUST00000169576.8
ENSMUST00000218490.2
3UTR-3UTR CCA 90 bp TATTGCATCCATGCACACCTCCTAAAAATGAGGTACAGCAGGGCAAACATTTTCAATCGTAACAAAGACTaGACAGTGTTTTGCTCATTC +
Preference number: 2 (lower is better)
Translates to: YCIHAHLLKMRYSRANIFNRNKD*TVFCSF
Trigger: GAATGAGCAAAACACTGTCCAGTCTTTGTTACGATT...GAAAATGTTTGCCCTGCTGTACCTCATTTTTAGGAGGTGTGCATGGATGCAATA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169576.8
3UTR CCA 72 bp CTCAGTTACAGCGCAGCCCTGGAGCCCCAGAGACTGTaGCGATCTCTACAGTCGGATGCCTGCAGTAAGCCT +
Preference number: 3 (lower is better)
Translates to: LSYSAALEPQRL*RSLQSDACSKP
Trigger: AGGCTTACTGCAGGCATCCGACTGTAGAGATCGCCACAGTCTCTGGGGCTCCAGGGCTGCGCTGTAACTGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169576.8
3UTR CCA 72 bp GTAGGTCCCCCGCTCATACGTGTTGGTTTTCATTGTTaGCTCCATGCCTGGTGCCCTGGTAATCCATACCCG +
Preference number: 3 (lower is better)
Translates to: VGPPLIRVGFHC*LHAWCPGNPYP
Trigger: CGGGTATGGATTACCAGGGCACCAGGCATGGAGCCAACAATGAAAACCAACACGTATGAGCGGGGGACCTAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR-3UTR CAA 90 bp GCTCAGTTACAGCGCAGCCCTGGAGCCCCAGAGACTGTGGCGATCTCTACAGTCCTTTACGTAAGCCAATaGCCAGATCCTCAAGGGATT +
Preference number: 3 (lower is better)
Translates to: AQLQRSPGAPETVAISTVLYVSQ*PDPQGI
Trigger: AATCCCTTGAGGATCTGGCAATTGGCTTACGTAAAG...GACTGTAGAGATCGCCACAGTCTCTGGGGCTCCAGGGCTGCGCTGTAACTGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169576.8
3UTR-3UTR CAA 90 bp AATAGTAGGTCCCCCGCTCATACGTGTTGGTTTTCATTGTTGGCTCCATGCCTGCATACCCGCTCCTCCTaGTGGTATCTCCAATCACGG +
Preference number: 3 (lower is better)
Translates to: NSRSPAHTCWFSLLAPCLHTRSS*WYLQSR
Trigger: CCGTGATTGGAGATACCACAAGGAGGAGCGGGTATG...CAGGCATGGAGCCAACAATGAAAACCAACACGTATGAGCGGGGGACCTACTATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR-3UTR CAA 90 bp TTGCTCATTCTGGATGAAGCTCAGTTACAGCGCAGCCCTGGAGCCCCAGAGACTCTTTACGTAAGCCAATaGCCAGATCCTCAAGGGATT +
Preference number: 3 (lower is better)
Translates to: LLILDEAQLQRSPGAPETLYVSQ*PDPQGI
Trigger: AATCCCTTGAGGATCTGGCAATTGGCTTACGTAAAG...AGTCTCTGGGGCTCCAGGGCTGCGCTGTAACTGAGCTTCATCCAGAATGAGCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169576.8
3UTR-3UTR CAA 90 bp TTATTAATGGAGTTGGGTTGCCGCTCCCTTCCCTTCTATTCCGGTCAGCTAACGGCAAAATACCCCTGCTaGGAGATGGAGGCGTGTGAA +
Preference number: 3 (lower is better)
Translates to: LLMELGCRSLPFYSGQLTAKYPC*EMEACE
Trigger: TTCACACGCCTCCATCTCCAAGCAGGGGTATTTTGC...CGTTAGCTGACCGGAATAGAAGGGAAGGGAGCGGCAACCCAACTCCATTAATAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR TCA 72 bp TGTGAAGTGACATTGTTGGTACCCCTGTTGTTGGCGTaGCGTGGCTCGGTAACTGAGTGCCTTGTGATAAGC +
Preference number: 3 (lower is better)
Translates to: CEVTLLVPLLLA*RGSVTECLVIS
Trigger: GCTTATCACAAGGCACTCAGTTACCGAGCCACGTCACGCCAACAACAGGGGTACCAACAATGTCACTTCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000169507.8
ENSMUST00000169576.8
ENSMUST00000218490.2
3UTR GCA 72 bp GCCAATTGCCAGATCCTCAAGGGATTAAAACCAGGGTaGCTGAGCCACATCAGCTCTGCAGTTATGTCGAGT +
Preference number: 3 (lower is better)
Translates to: ANCQILKGLKPG*LSHISSAVMSS
Trigger: ACTCGACATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCAATTGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169576.8
ENSMUST00000169921.8
3UTR GCA 72 bp GCTGTCGAGAAGGCTGTTGCTTTGGCATACATATTATaGTTGGCGAGCTTCTGTTGGGGCTACCTAACCCTG +
Preference number: 3 (lower is better)
Translates to: AVEKAVALAYIL*LASFCWGYLTL
Trigger: CAGGGTTAGGTAGCCCCAACAGAAGCTCGCCAAGCATAATATGTATGCCAAAGCAACAGCCTTCTCGACAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000169507.8
ENSMUST00000169576.8
ENSMUST00000218490.2
3UTR GCA 72 bp ATACGTGTTGGTTTTCATTGTTGGCTCCATGCCTGGTaGCCTGGTAATCCATACCCGCTCCTCCTTGTGGTA +
Preference number: 3 (lower is better)
Translates to: IRVGFHCWLHAW*PGNPYPLLLVV
Trigger: TACCACAAGGAGGAGCGGGTATGGATTACCAGGGCACCAGGCATGGAGCCAACAATGAAAACCAACACGTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR CCA 72 bp CCTGGTGCCCTGGTAATCCATACCCGCTCCTCCTTGTaGTATCTCCAATCACGGTTAAAAAGTTCTACCGCA +
Preference number: 3 (lower is better)
Translates to: PGALVIHTRSSL*YLQSRLKSSTA
Trigger: TGCGGTAGAACTTTTTAACCGTGATTGGAGATACCACAAGGAGGAGCGGGTATGGATTACCAGGGCACCAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR CCA 72 bp AGTCAAAGAAATAGTAGGTCCCCCGCTCATACGTGTTaGTTTTCATTGTTGGCTCCATGCCTGGTGCCCTGG +
Preference number: 3 (lower is better)
Translates to: SQRNSRSPAHTC*FSLLAPCLVPW
Trigger: CCAGGGCACCAGGCATGGAGCCAACAATGAAAACCAACACGTATGAGCGGGGGACCTACTATTTCTTTGACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR-3UTR CAA 90 bp AGTGTTTTGCTCATTCTGGATGAAGCTCAGTTACAGCGCAGCCCTGGAGCCCCACTTTACGTAAGCCAATaGCCAGATCCTCAAGGGATT +
Preference number: 3 (lower is better)
Translates to: SVLLILDEAQLQRSPGAPLYVSQ*PDPQGI
Trigger: AATCCCTTGAGGATCTGGCAATTGGCTTACGTAAAG...TGGGGCTCCAGGGCTGCGCTGTAACTGAGCTTCATCCAGAATGAGCAAAACACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169576.8
3UTR-3UTR CAA 90 bp GGCCCTTTAGTGCACAGGGCGACAAAGTCCCCTGACCAGCAGTTCCAGAATGTCTTTCTGTCAGTGTACTaGCTTGTCTTTATAGACCCA +
Preference number: 3 (lower is better)
Translates to: GPLVHRATKSPDQQFQNVFLSVY*LVFIDP
Trigger: TGGGTCTATAAAGACAAGCAAGTACACTGACAGAAA...GACATTCTGGAACTGCTGGTCAGGGGACTTTGTCGCCCTGTGCACTAAAGGGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169576.8
3UTR-3UTR CAA 90 bp GAGCTTCTGTTGGGGCTACCTAACCCTGAACTGCTCATGCTATTTGTCCTGCTATGTGAAGTGACATTGTaGGTACCCCTGTTGTTGGCG +
Preference number: 3 (lower is better)
Translates to: ELLLGLPNPELLMLFVLLCEVTL*VPLLLA
Trigger: CGCCAACAACAGGGGTACCAACAATGTCACTTCACA...TAGCAGGACAAATAGCATGAGCAGTTCAGGGTTAGGTAGCCCCAACAGAAGCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000169507.8
ENSMUST00000169576.8
ENSMUST00000218490.2
3UTR-3UTR CAA 90 bp GCATACATATTATGCTTGGCGAGCTTCTGTTGGGGCTACCTAACCCTGAACTGCTGTGAAGTGACATTGTaGGTACCCCTGTTGTTGGCG +
Preference number: 3 (lower is better)
Translates to: AYILCLASFCWGYLTLNCCEVTL*VPLLLA
Trigger: CGCCAACAACAGGGGTACCAACAATGTCACTTCACA...GCAGTTCAGGGTTAGGTAGCCCCAACAGAAGCTCGCCAAGCATAATATGTATGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000169507.8
ENSMUST00000169576.8
ENSMUST00000218490.2
3UTR-3UTR CAA 90 bp ATGCTTGGCGAGCTTCTGTTGGGGCTACCTAACCCTGAACTGCTCATGCTATTTGCGTGTGAAGTGACATaGTTGGTACCCCTGTTGTTG +
Preference number: 3 (lower is better)
Translates to: MLGELLLGLPNPELLMLFACEVT*LVPLLL
Trigger: CAACAACAGGGGTACCAACAATGTCACTTCACACGC...AAATAGCATGAGCAGTTCAGGGTTAGGTAGCCCCAACAGAAGCTCGCCAAGCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000169507.8
ENSMUST00000169576.8
ENSMUST00000218490.2
3UTR GCA 72 bp GGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTaGAGTTATGTCGAGTATTGTGCTGAGACAGCCATA +
Preference number: 3 (lower is better)
Translates to: GIKTRVPEPHQL*SYVEYCAETAI
Trigger: TATGGCTGTCTCAGCACAATACTCGACATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169576.8
ENSMUST00000169921.8
3UTR CCA 72 bp AATCGTAACAAAGACTGGACAGTGTTTTGCTCATTCTaGATGAAGCTCAGTTACAGCGCAGCCCTGGAGCCC +
Preference number: 3 (lower is better)
Translates to: NRNKDWTVFCSF*MKLSYSAALEP
Trigger: GGGCTCCAGGGCTGCGCTGTAACTGAGCTTCATCCAGAATGAGCAAAACACTGTCCAGTCTTTGTTACGATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169576.8
3UTR-3UTR CAA 90 bp CTGGGAGTGGTTCATCATATTCCTAGGATTCATAGGCAAAATACCCCTGCTTGGGCAAAATACCCCTGCTaGGAGATGGAGGCGTGTGAA +
Preference number: 3 (lower is better)
Translates to: LGVVHHIPRIHRQNTPAWAKYPC*EMEACE
Trigger: TTCACACGCCTCCATCTCCAAGCAGGGGTATTTTGC...CCAAGCAGGGGTATTTTGCCTATGAATCCTAGGAATATGATGAACCACTCCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000169507.8
ENSMUST00000169576.8
ENSMUST00000218490.2
3UTR TCA 72 bp GACAAGTCCGTGTTTGTGAGTGTCTGGGGGACACAATaGCACCCAAGGACTGCCTATCCAAAATTATCTCTG +
Preference number: 3 (lower is better)
Translates to: DKSVFVSVWGTQ*HPRTAYPKLSL
Trigger: CAGAGATAATTTTGGATAGGCAGTCCTTGGGTGTCATTGTGTCCCCCAGACACTCACAAACACGGACTTGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020374.6
3UTR TCA 72 bp ATCTGGCCCTTTAGTGCACAGGGCGACAAAGTCCCCTaGCCAGCAGTTCCAGAATGTCCCATTTTCATATAT +
Preference number: 3 (lower is better)
Translates to: IWPFSAQGDKVP*PAVPECPIFIY
Trigger: ATATATGAAAATGGGACATTCTGGAACTGCTGGTCAGGGGACTTTGTCGCCCTGTGCACTAAAGGGCCAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169576.8
3UTR TCA 72 bp GTAGTCGCTGTCCACCCCCTCTACAAACTTCTTTCTTaGAGCACCAAACATGCTGTTTGTCACCTGTGCAAC +
Preference number: 3 (lower is better)
Translates to: VVAVHPLYKLLS*STKHAVCHLCN
Trigger: GTTGCACAGGTGACAAACAGCATGTTTGGTGCTTCAAGAAAGAAGTTTGTAGAGGGGGTGGACAGCGACTAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR TCA 72 bp AGTCTTTTTAGAAGGCTTGCTGAGCAGGGTTGTAGTTaGAGGTGGATGGCAGGTGAGGCCGCTCTTCTAATT +
Preference number: 3 (lower is better)
Translates to: SLFRRLAEQGCS*RWMAGEAALLI
Trigger: AATTAGAAGAGCGGCCTCACCTGCCATCCACCTTCAACTACAACCCTGCTCAGCAAGCCTTCTAAAAAGACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR GCA 72 bp ATGCTGTTTGTCACCTGTGCAACTTCTTTCAACATTTaGTACTCTGGGGATGGGAAAGCTCAGAGCTGGAGG +
Preference number: 3 (lower is better)
Translates to: MLFVTCATSFNI*YSGDGKAQSWR
Trigger: CCTCCAGCTCTGAGCTTTCCCATCCCCAGAGTAGCAAATGTTGAAAGAAGTTGCACAGGTGACAAACAGCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR-3UTR CAA 90 bp GAGTGGTTCATCATATTCCTAGGATTCATAGGCAAAATACCCCTGCTTGGAGATCTTGGCGAGCTTCTGTaGGGGCTACCTAACCCTGAA +
Preference number: 3 (lower is better)
Translates to: EWFIIFLGFIGKIPLLGDLGELL*GLPNPE
Trigger: TTCAGGGTTAGGTAGCCCCAACAGAAGCTCGCCAAG...ATCTCCAAGCAGGGGTATTTTGCCTATGAATCCTAGGAATATGATGAACCACTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000169507.8
ENSMUST00000169576.8
ENSMUST00000218490.2
3UTR-3UTR CAA 90 bp CTGGGAGTGGTTCATCATATTCCTAGGATTCATAGGCAAAATACCCCTGCTTGGGTTGCCCGTATAAACTaGCCCCAAATTGAGACAGCT +
Preference number: 3 (lower is better)
Translates to: LGVVHHIPRIHRQNTPAWVARIN*PQIETA
Trigger: AGCTGTCTCAATTTGGGGCAAGTTTATACGGGCAAC...CCAAGCAGGGGTATTTTGCCTATGAATCCTAGGAATATGATGAACCACTCCCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000169507.8
ENSMUST00000169576.8
ENSMUST00000218490.2
3UTR-3UTR CAA 90 bp ACCTGGGAGTGGTTCATCATATTCCTAGGATTCATAGGCAAAATACCCCTGCTTGCGTGTGAAGTGACATaGTTGGTACCCCTGTTGTTG +
Preference number: 3 (lower is better)
Translates to: TWEWFIIFLGFIGKIPLLACEVT*LVPLLL
Trigger: CAACAACAGGGGTACCAACAATGTCACTTCACACGC...AAGCAGGGGTATTTTGCCTATGAATCCTAGGAATATGATGAACCACTCCCAGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000169507.8
ENSMUST00000169576.8
ENSMUST00000218490.2
3UTR-3UTR CAA 90 bp CATCCCCGCCGTTCATGTAATACAGATAGAAGAGGAGGTCTTCTCCATATCGGCCTTGGGATTGCTCATTaGCAGGTTTTGTTACCATTC +
Preference number: 3 (lower is better)
Translates to: HPRRSCNTDRRGGLLHIGLGIAH*QVLLPF
Trigger: GAATGGTAACAAAACCTGCAAATGAGCAATCCCAAG...GCCGATATGGAGAAGACCTCCTCTTCTATCTGTATTACATGAACGGCGGGGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR TCA 72 bp CTCATGCTATTTGTCCTGCTAGGAATTCCAATGCCCTaGCCAACCTGGGAGTGGTTCATCATATTCCTAGGA +
Preference number: 3 (lower is better)
Translates to: LMLFVLLGIPMP*PTWEWFIIFLG
Trigger: TCCTAGGAATATGATGAACCACTCCCAGGTTGGTCAGGGCATTGGAATTCCTAGCAGGACAAATAGCATGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000169507.8
ENSMUST00000169576.8
ENSMUST00000218490.2
3UTR TCA 72 bp AGGCCAATCATTCCAAATTGGTCCGTCACCATCCCTTaGGGAATGTTAGTAACTCGACCATCAGGTAACACC +
Preference number: 3 (lower is better)
Translates to: RPIIPNWSVTIP*GMLVTRPSGNT
Trigger: GGTGTTACCTGATGGTCGAGTTACTAACATTCCTCAAGGGATGGTGACGGACCAATTTGGAATGATTGGCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR TCA 72 bp GCCACATCAGCTCTGCAGTTATGTCGAGTATTGTGCTaGGACAGCCATACCCCAAGAAAAGGGAAGTCTTTT +
Preference number: 3 (lower is better)
Translates to: ATSALQLCRVLC*DSHTPRKGKSF
Trigger: AAAAGACTTCCCTTTTCTTGGGGTATGGCTGTCTCAGCACAATACTCGACATAACTGCAGAGCTGATGTGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR GCA 72 bp CTTGTGATAAGCTGCGATTTAACTGAGGGGTATTGTTaGTCATCCCCCTCATTGGAAGGCCTAGTGCACTTT +
Preference number: 3 (lower is better)
Translates to: LVISCDLTEGYC*SSPSLEGLVHF
Trigger: AAAGTGCACTAGGCCTTCCAATGAGGGGGATGAGCAACAATACCCCTCAGTTAAATCGCAGCTTATCACAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000169507.8
ENSMUST00000169576.8
ENSMUST00000218490.2
3UTR-3UTR CAA 90 bp TTGTTAAATATTCTGATGGAACATGGAAGTCTATGTCTTGAGGCCGACAAGGTGGCATACATATTATGCTaGGCGAGCTTCTGTTGGGGC +
Preference number: 3 (lower is better)
Translates to: LLNILMEHGSLCLEADKVAYILC*ASFCWG
Trigger: GCCCCAACAGAAGCTCGCCAAGCATAATATGTATGC...CACCTTGTCGGCCTCAAGACATAGACTTCCATGTTCCATCAGAATATTTAACAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR-3UTR CAA 90 bp TTTGGCATACATATTATGCTTGGCGAGCTTCTGTTGGGGCTACCTAACCCTGAAAACTTCTTTCAACATTaGCTACTCTGGGGATGGGAA +
Preference number: 3 (lower is better)
Translates to: FGIHIMLGELLLGLPNPENFFQH*LLWGWE
Trigger: TTCCCATCCCCAGAGTAGCAAATGTTGAAAGAAGTT...TTCAGGGTTAGGTAGCCCCAACAGAAGCTCGCCAAGCATAATATGTATGCCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR-3UTR CAA 90 bp GGTAATGCTGGAAAATCTTCGTTGTGTATTGAGAAGTCTTGGGATTGCTCATTTTGTGAAGTGACATTGTaGGTACCCCTGTTGTTGGCG +
Preference number: 3 (lower is better)
Translates to: GNAGKSSLCIEKSWDCSFCEVTL*VPLLLA
Trigger: CGCCAACAACAGGGGTACCAACAATGTCACTTCACA...AAATGAGCAATCCCAAGACTTCTCAATACACAACGAAGATTTTCCAGCATTACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR-3UTR CAA 90 bp ATGTCCCATTTTCATATATTGCATCCATGCACACCTCCTAAAAATGAGGTACAGACGTGTTGGTTTTCATaGTTGGCTCCATGCCTGGTG +
Preference number: 3 (lower is better)
Translates to: MSHFHILHPCTPPKNEVQTCWFS*LAPCLV
Trigger: CACCAGGCATGGAGCCAACAATGAAAACCAACACGT...CTGTACCTCATTTTTAGGAGGTGTGCATGGATGCAATATATGAAAATGGGACAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR-3UTR CAA 90 bp TATTGCATCCATGCACACCTCCTAAAAATGAGGTACAGCAGGGCAAACATTTTCGAGAAGGCTGTTGCTTaGGCATACATATTATGCTTG +
Preference number: 3 (lower is better)
Translates to: YCIHAHLLKMRYSRANIFEKAVA*AYILCL
Trigger: CAAGCATAATATGTATGCCAAAGCAACAGCCTTCTC...GAAAATGTTTGCCCTGCTGTACCTCATTTTTAGGAGGTGTGCATGGATGCAATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR GCA 72 bp TTATTACAAAATCGTAACAAAGACTGGACAGTGTTTTaGTCATTCTGGATGAAGCTCAGTTACAGCGCAGCC +
Preference number: 3 (lower is better)
Translates to: LLQNRNKDWTVF*SFWMKLSYSAA
Trigger: GGCTGCGCTGTAACTGAGCTTCATCCAGAATGAGCAAAACACTGTCCAGTCTTTGTTACGATTTTGTAATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169576.8
3UTR GCA 72 bp AGTTCCAGAATGTCCCATTTTCATATATTGCATCCATaGACACCTCCTAAAAATGAGGTACAGCAGGGCAAA +
Preference number: 3 (lower is better)
Translates to: SSRMSHFHILHP*TPPKNEVQQGK
Trigger: TTTGCCCTGCTGTACCTCATTTTTAGGAGGTGTGCATGGATGCAATATATGAAAATGGGACATTCTGGAACT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169576.8
3UTR CCA 72 bp TGCTGTCGTCATTACTTGACGTTGGATCTTTATAGCTaGAACCAGGTAATGCTGGAAAATCTTCGTTGTGTA +
Preference number: 3 (lower is better)
Translates to: CCRHYLTLDLYS*NQVMLENLRCV
Trigger: TACACAACGAAGATTTTCCAGCATTACCTGGTTCCAGCTATAAAGATCCAACGTCAAGTAATGACGACAGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR-3UTR CAA 90 bp ATGTCCCATTTTCATATATTGCATCCATGCACACCTCCTAAAAATGAGGTACAGCTTTACGTAAGCCAATaGCCAGATCCTCAAGGGATT +
Preference number: 3 (lower is better)
Translates to: MSHFHILHPCTPPKNEVQLYVSQ*PDPQGI
Trigger: AATCCCTTGAGGATCTGGCAATTGGCTTACGTAAAG...CTGTACCTCATTTTTAGGAGGTGTGCATGGATGCAATATATGAAAATGGGACAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169576.8
3UTR-3UTR CAA 90 bp TCGCTCATCCTTCCAAATGAAATACGAGAAGGATCTTCACATAAAAATGCACAAGTTGCCCGTATAAACTaGCCCCAAATTGAGACAGCT +
Preference number: 3 (lower is better)
Translates to: SLILPNEIREGSSHKNAQVARIN*PQIETA
Trigger: AGCTGTCTCAATTTGGGGCAAGTTTATACGGGCAAC...TTGTGCATTTTTATGTGAAGATCCTTCTCGTATTTCATTTGGAAGGATGAGCGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR-3UTR CAA 90 bp TCTGTCAGTGTACTTGCTTGTCTTTATAGACCCAAGTCTGTCTGCTGGCAAAAACTACAAACTTCTTTCTaGAAGCACCAAACATGCTGT +
Preference number: 3 (lower is better)
Translates to: SVSVLACLYRPKSVCWQKLQTSF*KHQTCC
Trigger: ACAGCATGTTTGGTGCTTCAAGAAAGAAGTTTGTAG...TTTTTGCCAGCAGACAGACTTGGGTCTATAAAGACAAGCAAGTACACTGACAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR TCA 72 bp ACTTTTATCTCCAGGGAATTTGGGTCCATCTGTACTTaGAGTCGTCTTCCCCGATGTACTCAAATTAGATTT +
Preference number: 3 (lower is better)
Translates to: TFISREFGSICT*SRLPRCTQIRF
Trigger: AAATCTAATTTGAGTACATCGGGGAAGACGACTTCAAGTACAGATGGACCCAAATTCCCTGGAGATAAAAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
CDS-3UTR TCA 90 bp GCGCAGCCCTGGAGCCCCAGAGACTGTGGCGATCTCTACAGTCGGATGCCTGCAGGAATTCCAATGCCCTaGCCAACCTGGGAGTGGTTC +
Preference number: 4 (lower is better)
Translates to: AQPWSPRDCGDLYSRMPAGIPMP*PTWEWF
Trigger: GAACCACTCCCAGGTTGGTCAGGGCATTGGAATTCC...TGCAGGCATCCGACTGTAGAGATCGCCACAGTCTCTGGGGCTCCAGGGCTGCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR TCA 90 bp GCGCAGCCCTGGAGCCCCAGAGACTGTGGCGATCTCTACAGTCGGATGCCTGCAGAGCAGGGTTGTAGTTaGAGGTGGATGGCAGGTGAG +
Preference number: 4 (lower is better)
Translates to: AQPWSPRDCGDLYSRMPAEQGCS*RWMAGE
Trigger: CTCACCTGCCATCCACCTTCAACTACAACCCTGCTC...TGCAGGCATCCGACTGTAGAGATCGCCACAGTCTCTGGGGCTCCAGGGCTGCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR TCA 90 bp GCTCAGTTACAGCGCAGCCCTGGAGCCCCAGAGACTGTGGCGATCTCTACAGTCTTGAGACAGCTGACCTaGCGTAGATGGCGATGCCAG +
Preference number: 4 (lower is better)
Translates to: AQLQRSPGAPETVAISTVLRQLT*RRWRCQ
Trigger: CTGGCATCGCCATCTACGTCAGGTCAGCTGTCTCAA...GACTGTAGAGATCGCCACAGTCTCTGGGGCTCCAGGGCTGCGCTGTAACTGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR TCA 90 bp GCTCAGTTACAGCGCAGCCCTGGAGCCCCAGAGACTGTGGCGATCTCTACAGTCGGAATTCCAATGCCCTaGCCAACCTGGGAGTGGTTC +
Preference number: 4 (lower is better)
Translates to: AQLQRSPGAPETVAISTVGIPMP*PTWEWF
Trigger: GAACCACTCCCAGGTTGGTCAGGGCATTGGAATTCC...GACTGTAGAGATCGCCACAGTCTCTGGGGCTCCAGGGCTGCGCTGTAACTGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CCA 90 bp GCGCAGCCCTGGAGCCCCAGAGACTGTGGCGATCTCTACAGTCGGATGCCTGCACAAAATACCCCTGCTTaGAGATGGAGGCGTGTGAAG +
Preference number: 4 (lower is better)
Translates to: AQPWSPRDCGDLYSRMPAQNTPA*RWRRVK
Trigger: CTTCACACGCCTCCATCTCCAAGCAGGGGTATTTTG...TGCAGGCATCCGACTGTAGAGATCGCCACAGTCTCTGGGGCTCCAGGGCTGCGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CCA 90 bp GCGCAGCCCTGGAGCCCCAGAGACTGTGGCGATCTCTACAGTCGGATGCCTGCAGTTGGTTTTCATTGTTaGCTCCATGCCTGGTGCCCT +
Preference number: 4 (lower is better)
Translates to: AQPWSPRDCGDLYSRMPAVGFHC*LHAWCP
Trigger: AGGGCACCAGGCATGGAGCCAACAATGAAAACCAAC...TGCAGGCATCCGACTGTAGAGATCGCCACAGTCTCTGGGGCTCCAGGGCTGCGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR TCA 90 bp GCTCAGTTACAGCGCAGCCCTGGAGCCCCAGAGACTGTGGCGATCTCTACAGTCGGGTCCATCTGTACTTaGAGTCGTCTTCCCCGATGT +
Preference number: 4 (lower is better)
Translates to: AQLQRSPGAPETVAISTVGSICT*SRLPRC
Trigger: ACATCGGGGAAGACGACTTCAAGTACAGATGGACCC...GACTGTAGAGATCGCCACAGTCTCTGGGGCTCCAGGGCTGCGCTGTAACTGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR TCA 90 bp GCTCAGTTACAGCGCAGCCCTGGAGCCCCAGAGACTGTGGCGATCTCTACAGTCAAGGTGGATGGCAGGTaGGGCCGCTCTTCTAATTTG +
Preference number: 4 (lower is better)
Translates to: AQLQRSPGAPETVAISTVKVDGR*GRSSNL
Trigger: CAAATTAGAAGAGCGGCCTCACCTGCCATCCACCTT...GACTGTAGAGATCGCCACAGTCTCTGGGGCTCCAGGGCTGCGCTGTAACTGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR GCA 90 bp GCGCAGCCCTGGAGCCCCAGAGACTGTGGCGATCTCTACAGTCGGATGCCTGCATTAATGGAGTTGGGTTaGCGCTCCCTTCCCTTCTAT +
Preference number: 4 (lower is better)
Translates to: AQPWSPRDCGDLYSRMPALMELG*RSLPFY
Trigger: ATAGAAGGGAAGGGAGCGGCAACCCAACTCCATTAA...TGCAGGCATCCGACTGTAGAGATCGCCACAGTCTCTGGGGCTCCAGGGCTGCGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR GCA 90 bp GGCCCTTTAGTGCACAGGGCGACAAAGTCCCCTGACCAGCAGTTCCAGAATGTCTGGCTCCATGCCTGGTaGCCTGGTAATCCATACCCG +
Preference number: 4 (lower is better)
Translates to: GPLVHRATKSPDQQFQNVWLHAW*PGNPYP
Trigger: CGGGTATGGATTACCAGGGCACCAGGCATGGAGCCA...GACATTCTGGAACTGCTGGTCAGGGGACTTTGTCGCCCTGTGCACTAAAGGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR GCA 90 bp GCGCAGCCCTGGAGCCCCAGAGACTGTGGCGATCTCTACAGTCGGATGCCTGCATACCTAACCCTGAACTaGTCATGCTATTTGTCCTGC +
Preference number: 4 (lower is better)
Translates to: AQPWSPRDCGDLYSRMPAYLTLN*SCYLSC
Trigger: GCAGGACAAATAGCATGAGCAGTTCAGGGTTAGGTA...TGCAGGCATCCGACTGTAGAGATCGCCACAGTCTCTGGGGCTCCAGGGCTGCGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CCA 90 bp GCTCAGTTACAGCGCAGCCCTGGAGCCCCAGAGACTGTGGCGATCTCTACAGTCCAAAATACCCCTGCTTaGAGATGGAGGCGTGTGAAG +
Preference number: 4 (lower is better)
Translates to: AQLQRSPGAPETVAISTVQNTPA*RWRRVK
Trigger: CTTCACACGCCTCCATCTCCAAGCAGGGGTATTTTG...GACTGTAGAGATCGCCACAGTCTCTGGGGCTCCAGGGCTGCGCTGTAACTGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CCA 90 bp GCGCAGCCCTGGAGCCCCAGAGACTGTGGCGATCTCTACAGTCGGATGCCTGCACATACATATTATGCTTaGCGAGCTTCTGTTGGGGCT +
Preference number: 4 (lower is better)
Translates to: AQPWSPRDCGDLYSRMPAHTYYA*RASVGA
Trigger: AGCCCCAACAGAAGCTCGCCAAGCATAATATGTATG...TGCAGGCATCCGACTGTAGAGATCGCCACAGTCTCTGGGGCTCCAGGGCTGCGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR TCA 90 bp GGCCCTTTAGTGCACAGGGCGACAAAGTCCCCTGACCAGCAGTTCCAGAATGTCACGTGGCTCGGTAACTaGGTGCCTTGTGATAAGCTG +
Preference number: 4 (lower is better)
Translates to: GPLVHRATKSPDQQFQNVTWLGN*VPCDKL
Trigger: CAGCTTATCACAAGGCACTCAGTTACCGAGCCACGT...GACATTCTGGAACTGCTGGTCAGGGGACTTTGTCGCCCTGTGCACTAAAGGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR TCA 90 bp GGCCCTTTAGTGCACAGGGCGACAAAGTCCCCTGACCAGCAGTTCCAGAATGTCTGGAGGCGTGTGAAGTaGCATTGTTGGTACCCCTGT +
Preference number: 4 (lower is better)
Translates to: GPLVHRATKSPDQQFQNVWRRVK*HCWYPC
Trigger: ACAGGGGTACCAACAATGTCACTTCACACGCCTCCA...GACATTCTGGAACTGCTGGTCAGGGGACTTTGTCGCCCTGTGCACTAAAGGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR TCA 90 bp TTGCTCATTCTGGATGAAGCTCAGTTACAGCGCAGCCCTGGAGCCCCAGAGACTGGAATTCCAATGCCCTaGCCAACCTGGGAGTGGTTC +
Preference number: 4 (lower is better)
Translates to: LLILDEAQLQRSPGAPETGIPMP*PTWEWF
Trigger: GAACCACTCCCAGGTTGGTCAGGGCATTGGAATTCC...AGTCTCTGGGGCTCCAGGGCTGCGCTGTAACTGAGCTTCATCCAGAATGAGCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR TCA 90 bp AGTGTTTTGCTCATTCTGGATGAAGCTCAGTTACAGCGCAGCCCTGGAGCCCCATTGAGACAGCTGACCTaGCGTAGATGGCGATGCCAG +
Preference number: 4 (lower is better)
Translates to: SVLLILDEAQLQRSPGAPLRQLT*RRWRCQ
Trigger: CTGGCATCGCCATCTACGTCAGGTCAGCTGTCTCAA...TGGGGCTCCAGGGCTGCGCTGTAACTGAGCTTCATCCAGAATGAGCAAAACACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR TCA 90 bp GTAAGCCAATTGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCCCCTGTTGTTGGCGTaGCGTGGCTCGGTAACTGAG +
Preference number: 4 (lower is better)
Translates to: VSQLPDPQGIKTRVPEPHPLLLA*RGSVTE
Trigger: CTCAGTTACCGAGCCACGTCACGCCAACAACAGGGG...ATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCAATTGGCTTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp CCTTTAGTGCACAGGGCGACAAAGTCCCCTGACCAGCAGTTCCAGAATGTCCCAGGAGATGGAGGCGTGTaGAGTGACATTGTTGGTACC +
Preference number: 4 (lower is better)
Translates to: PLVHRATKSPDQQFQNVPGDGGV*SDIVGT
Trigger: GGTACCAACAATGTCACTTCACACGCCTCCATCTCC...TGGGACATTCTGGAACTGCTGGTCAGGGGACTTTGTCGCCCTGTGCACTAAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR TCA 90 bp CCTTTAGTGCACAGGGCGACAAAGTCCCCTGACCAGCAGTTCCAGAATGTCCCAGGGTCCATCTGTACTTaGAGTCGTCTTCCCCGATGT +
Preference number: 4 (lower is better)
Translates to: PLVHRATKSPDQQFQNVPGSICT*SRLPRC
Trigger: ACATCGGGGAAGACGACTTCAAGTACAGATGGACCC...TGGGACATTCTGGAACTGCTGGTCAGGGGACTTTGTCGCCCTGTGCACTAAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR TCA 90 bp TGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGAGCAGGGTTGTAGTTaGAGGTGGATGGCAGGTGAG +
Preference number: 4 (lower is better)
Translates to: CQILKGLKPGCLSHISSAEQGCS*RWMAGE
Trigger: CTCACCTGCCATCCACCTTCAACTACAACCCTGCTC...TGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CCA 90 bp GGCCCTTTAGTGCACAGGGCGACAAAGTCCCCTGACCAGCAGTTCCAGAATGTCCAAAATACCCCTGCTTaGAGATGGAGGCGTGTGAAG +
Preference number: 4 (lower is better)
Translates to: GPLVHRATKSPDQQFQNVQNTPA*RWRRVK
Trigger: CTTCACACGCCTCCATCTCCAAGCAGGGGTATTTTG...GACATTCTGGAACTGCTGGTCAGGGGACTTTGTCGCCCTGTGCACTAAAGGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CCA 90 bp TTGCTCATTCTGGATGAAGCTCAGTTACAGCGCAGCCCTGGAGCCCCAGAGACTTTGGCGAGCTTCTGTTaGGGCTACCTAACCCTGAAC +
Preference number: 4 (lower is better)
Translates to: LLILDEAQLQRSPGAPETLASFC*GYLTLN
Trigger: GTTCAGGGTTAGGTAGCCCCAACAGAAGCTCGCCAA...AGTCTCTGGGGCTCCAGGGCTGCGCTGTAACTGAGCTTCATCCAGAATGAGCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CCA 90 bp AGTGTTTTGCTCATTCTGGATGAAGCTCAGTTACAGCGCAGCCCTGGAGCCCCAGTAGTTGAAGGTGGATaGCAGGTGAGGCCGCTCTTC +
Preference number: 4 (lower is better)
Translates to: SVLLILDEAQLQRSPGAPVVEGG*QVRPLF
Trigger: GAAGAGCGGCCTCACCTGCCATCCACCTTCAACTAC...TGGGGCTCCAGGGCTGCGCTGTAACTGAGCTTCATCCAGAATGAGCAAAACACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR TCA 90 bp CAATTGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTTGAGACAGCTGACCTaGCGTAGATGGCGATGCCAG +
Preference number: 4 (lower is better)
Translates to: QLPDPQGIKTRVPEPHQLLRQLT*RRWRCQ
Trigger: CTGGCATCGCCATCTACGTCAGGTCAGCTGTCTCAA...GAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCAATTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp CCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTACGTGGCTCGGTAACTaGGTGCCTTGTGATAAGCTG +
Preference number: 4 (lower is better)
Translates to: PDPQGIKTRVPEPHQLCSTWLGN*VPCDKL
Trigger: CAGCTTATCACAAGGCACTCAGTTACCGAGCCACGT...ACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp AGTGTTTTGCTCATTCTGGATGAAGCTCAGTTACAGCGCAGCCCTGGAGCCCCAACGTGGCTCGGTAACTaGGTGCCTTGTGATAAGCTG +
Preference number: 4 (lower is better)
Translates to: SVLLILDEAQLQRSPGAPTWLGN*VPCDKL
Trigger: CAGCTTATCACAAGGCACTCAGTTACCGAGCCACGT...TGGGGCTCCAGGGCTGCGCTGTAACTGAGCTTCATCCAGAATGAGCAAAACACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR TCA 90 bp AAGGCAGGACCTCAAATGGTGACCCTTTCTTTACGTAAGCCAATTGCCAGATCCCCCCTGTTGTTGGCGTaGCGTGGCTCGGTAACTGAG +
Preference number: 4 (lower is better)
Translates to: KAGPQMVTLSLRKPIARSPLLLA*RGSVTE
Trigger: CTCAGTTACCGAGCCACGTCACGCCAACAACAGGGG...GGATCTGGCAATTGGCTTACGTAAAGAAAGGGTCACCATTTGAGGTCCTGCCTT
53% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp CATCAGCTCTGCAGTTATGTCGAGTATTGTGCTGAGACAGCCATACCCCAAGAACCCCTGTTGTTGGCGTaGCGTGGCTCGGTAACTGAG +
Preference number: 4 (lower is better)
Translates to: HQLCSYVEYCAETAIPQEPLLLA*RGSVTE
Trigger: CTCAGTTACCGAGCCACGTCACGCCAACAACAGGGG...TTCTTGGGGTATGGCTGTCTCAGCACAATACTCGACATAACTGCAGAGCTGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp TGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCATGGAGGCGTGTGAAGTaGCATTGTTGGTACCCCTGT +
Preference number: 4 (lower is better)
Translates to: CQILKGLKPGCLSHISSAWRRVK*HCWYPC
Trigger: ACAGGGGTACCAACAATGTCACTTCACACGCCTCCA...TGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp TTGCTCATTCTGGATGAAGCTCAGTTACAGCGCAGCCCTGGAGCCCCAGAGACTCATATCGGCCAAGTTTaGTTGCAGCCAGCTTATCCC +
Preference number: 4 (lower is better)
Translates to: LLILDEAQLQRSPGAPETHIGQV*LQPAYP
Trigger: GGGATAAGCTGGCTGCAATCAAACTTGGCCGATATG...AGTCTCTGGGGCTCCAGGGCTGCGCTGTAACTGAGCTTCATCCAGAATGAGCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR TCA 90 bp CCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTAAGGTGGATGGCAGGTaGGGCCGCTCTTCTAATTTG +
Preference number: 4 (lower is better)
Translates to: PDPQGIKTRVPEPHQLCSKVDGR*GRSSNL
Trigger: CAAATTAGAAGAGCGGCCTCACCTGCCATCCACCTT...ACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp CAATTGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCGAGCAGGGTTGTAGTTaGAGGTGGATGGCAGGTGAG +
Preference number: 4 (lower is better)
Translates to: QLPDPQGIKTRVPEPHQLEQGCS*RWMAGE
Trigger: CTCACCTGCCATCCACCTTCAACTACAACCCTGCTC...GAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCAATTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR GCA 90 bp GATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATTGGCTCCATGCCTGGTaGCCTGGTAATCCATACCCG +
Preference number: 4 (lower is better)
Translates to: DPQGIKTRVPEPHQLCSYWLHAW*PGNPYP
Trigger: CGGGTATGGATTACCAGGGCACCAGGCATGGAGCCA...ATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CCA 90 bp AGTGTTTTGCTCATTCTGGATGAAGCTCAGTTACAGCGCAGCCCTGGAGCCCCATTGGCGAGCTTCTGTTaGGGCTACCTAACCCTGAAC +
Preference number: 4 (lower is better)
Translates to: SVLLILDEAQLQRSPGAPLASFC*GYLTLN
Trigger: GTTCAGGGTTAGGTAGCCCCAACAGAAGCTCGCCAA...TGGGGCTCCAGGGCTGCGCTGTAACTGAGCTTCATCCAGAATGAGCAAAACACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CCA 90 bp CCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTTGGCGAGCTTCTGTTaGGGCTACCTAACCCTGAAC +
Preference number: 4 (lower is better)
Translates to: PDPQGIKTRVPEPHQLCSLASFC*GYLTLN
Trigger: GTTCAGGGTTAGGTAGCCCCAACAGAAGCTCGCCAA...ACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CCA 90 bp GCTCAGTTACAGCGCAGCCCTGGAGCCCCAGAGACTGTGGCGATCTCTACAGTCTATCTCCAGGGAATTTaGGTCCATCTGTACTTGAAG +
Preference number: 4 (lower is better)
Translates to: AQLQRSPGAPETVAISTVYLQGI*VHLYLK
Trigger: CTTCAAGTACAGATGGACCCAAATTCCCTGGAGATA...GACTGTAGAGATCGCCACAGTCTCTGGGGCTCCAGGGCTGCGCTGTAACTGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
3UTR CAA 72 bp AAGGAGCTCTTCCAGCCAAGGGGTTTATTAATGGAGTaGGGTTGCCGCTCCCTTCCCTTCTATTCCGGTCAG +
Preference number: 4 (lower is better)
Translates to: KELFQPRGLLME*GCRSLPFYSGQ
Trigger: CTGACCGGAATAGAAGGGAAGGGAGCGGCAACCCAACTCCATTAATAAACCCCTTGGCTGGAAGAGCTCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
CDS-3UTR TCA 90 bp ATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGTTGAGACAGCTGACCTaGCGTAGATGGCGATGCCAG +
Preference number: 4 (lower is better)
Translates to: ILKGLKPGCLSHISSAVMLRQLT*RRWRCQ
Trigger: CTGGCATCGCCATCTACGTCAGGTCAGCTGTCTCAA...CATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp CAATTGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGGAGGCGTGTGAAGTaGCATTGTTGGTACCCCTGT +
Preference number: 4 (lower is better)
Translates to: QLPDPQGIKTRVPEPHQLWRRVK*HCWYPC
Trigger: ACAGGGGTACCAACAATGTCACTTCACACGCCTCCA...GAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCAATTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp ATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGGGAATTCCAATGCCCTaGCCAACCTGGGAGTGGTTC +
Preference number: 4 (lower is better)
Translates to: ILKGLKPGCLSHISSAVMGIPMP*PTWEWF
Trigger: GAACCACTCCCAGGTTGGTCAGGGCATTGGAATTCC...CATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp TTGCTCATTCTGGATGAAGCTCAGTTACAGCGCAGCCCTGGAGCCCCAGAGACTTGGAAGTCTATGTCTTaGGGCCGACAAGGTGAAGAA +
Preference number: 4 (lower is better)
Translates to: LLILDEAQLQRSPGAPETWKSMS*GRQGEE
Trigger: TTCTTCACCTTGTCGGCCTCAAGACATAGACTTCCA...AGTCTCTGGGGCTCCAGGGCTGCGCTGTAACTGAGCTTCATCCAGAATGAGCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR TCA 90 bp TGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCACATATCGGCCAAGTTTaGTTGCAGCCAGCTTATCCC +
Preference number: 4 (lower is better)
Translates to: CQILKGLKPGCLSHISSAHIGQV*LQPAYP
Trigger: GGGATAAGCTGGCTGCAATCAAACTTGGCCGATATG...TGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp GTAAGCCAATTGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATGAGCAGGGTTGTAGTTaGAGGTGGATGGCAGGTGAG +
Preference number: 4 (lower is better)
Translates to: VSQLPDPQGIKTRVPEPHEQGCS*RWMAGE
Trigger: CTCACCTGCCATCCACCTTCAACTACAACCCTGCTC...ATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCAATTGGCTTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp GGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGTCGAGTATGAGCAGGGTTGTAGTTaGAGGTGGATGGCAGGTGAG +
Preference number: 4 (lower is better)
Translates to: GIKTRVPEPHQLCSYVEYEQGCS*RWMAGE
Trigger: CTCACCTGCCATCCACCTTCAACTACAACCCTGCTC...ATACTCGACATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CCA 90 bp CAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGTCGAGTTGGCGAGCTTCTGTTaGGGCTACCTAACCCTGAAC +
Preference number: 4 (lower is better)
Translates to: QGIKTRVPEPHQLCSYVELASFC*GYLTLN
Trigger: GTTCAGGGTTAGGTAGCCCCAACAGAAGCTCGCCAA...CTCGACATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CCA 90 bp AGTGTTTTGCTCATTCTGGATGAAGCTCAGTTACAGCGCAGCCCTGGAGCCCCAAAGATGTACCATTCCTaGGTCTGTCTCTGCTGCCCT +
Preference number: 4 (lower is better)
Translates to: SVLLILDEAQLQRSPGAPKMYHS*VCLCCP
Trigger: AGGGCAGCAGAGACAGACCCAGGAATGGTACATCTT...TGGGGCTCCAGGGCTGCGCTGTAACTGAGCTTCATCCAGAATGAGCAAAACACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CCA 90 bp GTAAGCCAATTGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATGTAGTTGAAGGTGGATaGCAGGTGAGGCCGCTCTTC +
Preference number: 4 (lower is better)
Translates to: VSQLPDPQGIKTRVPEPHVVEGG*QVRPLF
Trigger: GAAGAGCGGCCTCACCTGCCATCCACCTTCAACTAC...ATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCAATTGGCTTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CCA 90 bp CTGAGCCACATCAGCTCTGCAGTTATGTCGAGTATTGTGCTGAGACAGCCATACGTAGTTGAAGGTGGATaGCAGGTGAGGCCGCTCTTC +
Preference number: 4 (lower is better)
Translates to: LSHISSAVMSSIVLRQPYVVEGG*QVRPLF
Trigger: GAAGAGCGGCCTCACCTGCCATCCACCTTCAACTAC...GTATGGCTGTCTCAGCACAATACTCGACATAACTGCAGAGCTGATGTGGCTCAG
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CCA 90 bp GGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGTCGAGTATGTAGTTGAAGGTGGATaGCAGGTGAGGCCGCTCTTC +
Preference number: 4 (lower is better)
Translates to: GIKTRVPEPHQLCSYVEYVVEGG*QVRPLF
Trigger: GAAGAGCGGCCTCACCTGCCATCCACCTTCAACTAC...ATACTCGACATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp AAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGTCGAGTATTGTGCTACGTGGCTCGGTAACTaGGTGCCTTGTGATAAGCTG +
Preference number: 4 (lower is better)
Translates to: KTRVPEPHQLCSYVEYCATWLGN*VPCDKL
Trigger: CAGCTTATCACAAGGCACTCAGTTACCGAGCCACGT...AGCACAATACTCGACATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp ATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGACGTGGCTCGGTAACTaGGTGCCTTGTGATAAGCTG +
Preference number: 4 (lower is better)
Translates to: ILKGLKPGCLSHISSAVMTWLGN*VPCDKL
Trigger: CAGCTTATCACAAGGCACTCAGTTACCGAGCCACGT...CATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp GATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGGAGATGGAGGCGTGTaGAGTGACATTGTTGGTACC +
Preference number: 4 (lower is better)
Translates to: DPQGIKTRVPEPHQLCSYGDGGV*SDIVGT
Trigger: GGTACCAACAATGTCACTTCACACGCCTCCATCTCC...ATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp GTAAGCCAATTGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATGGAGATGGAGGCGTGTaGAGTGACATTGTTGGTACC +
Preference number: 4 (lower is better)
Translates to: VSQLPDPQGIKTRVPEPHGDGGV*SDIVGT
Trigger: GGTACCAACAATGTCACTTCACACGCCTCCATCTCC...ATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCAATTGGCTTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp GGCCCTTTAGTGCACAGGGCGACAAAGTCCCCTGACCAGCAGTTCCAGAATGTCATCTTCGTTGTGTATTaGGAAGTCTTGGGATTGCTC +
Preference number: 4 (lower is better)
Translates to: GPLVHRATKSPDQQFQNVIFVVY*EVLGLL
Trigger: GAGCAATCCCAAGACTTCTCAATACACAACGAAGAT...GACATTCTGGAACTGCTGGTCAGGGGACTTTGTCGCCCTGTGCACTAAAGGGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR TCA 90 bp GATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGGGTCCATCTGTACTTaGAGTCGTCTTCCCCGATGT +
Preference number: 4 (lower is better)
Translates to: DPQGIKTRVPEPHQLCSYGSICT*SRLPRC
Trigger: ACATCGGGGAAGACGACTTCAAGTACAGATGGACCC...ATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp CTGAGCCACATCAGCTCTGCAGTTATGTCGAGTATTGTGCTGAGACAGCCATACGGGTCCATCTGTACTTaGAGTCGTCTTCCCCGATGT +
Preference number: 4 (lower is better)
Translates to: LSHISSAVMSSIVLRQPYGSICT*SRLPRC
Trigger: ACATCGGGGAAGACGACTTCAAGTACAGATGGACCC...GTATGGCTGTCTCAGCACAATACTCGACATAACTGCAGAGCTGATGTGGCTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp AGTGTTTTGCTCATTCTGGATGAAGCTCAGTTACAGCGCAGCCCTGGAGCCCCATCCGTCACCATCCCTTaGGGAATGTTAGTAACTCGA +
Preference number: 4 (lower is better)
Translates to: SVLLILDEAQLQRSPGAPSVTIP*GMLVTR
Trigger: TCGAGTTACTAACATTCCTCAAGGGATGGTGACGGA...TGGGGCTCCAGGGCTGCGCTGTAACTGAGCTTCATCCAGAATGAGCAAAACACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR TCA 90 bp GGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGTCGAGTATAAGGTGGATGGCAGGTaGGGCCGCTCTTCTAATTTG +
Preference number: 4 (lower is better)
Translates to: GIKTRVPEPHQLCSYVEYKVDGR*GRSSNL
Trigger: CAAATTAGAAGAGCGGCCTCACCTGCCATCCACCTT...ATACTCGACATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CCA 90 bp CTGAGCCACATCAGCTCTGCAGTTATGTCGAGTATTGTGCTGAGACAGCCATACTTGGCGAGCTTCTGTTaGGGCTACCTAACCCTGAAC +
Preference number: 4 (lower is better)
Translates to: LSHISSAVMSSIVLRQPYLASFC*GYLTLN
Trigger: GTTCAGGGTTAGGTAGCCCCAACAGAAGCTCGCCAA...GTATGGCTGTCTCAGCACAATACTCGACATAACTGCAGAGCTGATGTGGCTCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CCA 90 bp TTGCTCATTCTGGATGAAGCTCAGTTACAGCGCAGCCCTGGAGCCCCAGAGACTCATACATATTATGCTTaGCGAGCTTCTGTTGGGGCT +
Preference number: 4 (lower is better)
Translates to: LLILDEAQLQRSPGAPETHTYYA*RASVGA
Trigger: AGCCCCAACAGAAGCTCGCCAAGCATAATATGTATG...AGTCTCTGGGGCTCCAGGGCTGCGCTGTAACTGAGCTTCATCCAGAATGAGCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CCA 90 bp CCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTCCCGCTCATACGTGTTaGTTTTCATTGTTGGCTCCA +
Preference number: 4 (lower is better)
Translates to: PDPQGIKTRVPEPHQLCSPAHTC*FSLLAP
Trigger: TGGAGCCAACAATGAAAACCAACACGTATGAGCGGG...ACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CCA 90 bp TGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCACCCGCTCATACGTGTTaGTTTTCATTGTTGGCTCCA +
Preference number: 4 (lower is better)
Translates to: CQILKGLKPGCLSHISSAPAHTC*FSLLAP
Trigger: TGGAGCCAACAATGAAAACCAACACGTATGAGCGGG...TGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp CAATTGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGGAAGTCTATGTCTTaGGGCCGACAAGGTGAAGAA +
Preference number: 4 (lower is better)
Translates to: QLPDPQGIKTRVPEPHQLWKSMS*GRQGEE
Trigger: TTCTTCACCTTGTCGGCCTCAAGACATAGACTTCCA...GAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCAATTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp GATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATCATATCGGCCAAGTTTaGTTGCAGCCAGCTTATCCC +
Preference number: 4 (lower is better)
Translates to: DPQGIKTRVPEPHQLCSYHIGQV*LQPAYP
Trigger: GGGATAAGCTGGCTGCAATCAAACTTGGCCGATATG...ATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR GCA 90 bp CTGAGCCACATCAGCTCTGCAGTTATGTCGAGTATTGTGCTGAGACAGCCATACGGCTCGGTAACTGAGTaGCTTGTGATAAGCTGCGAT +
Preference number: 4 (lower is better)
Translates to: LSHISSAVMSSIVLRQPYGSVTE*LVISCD
Trigger: ATCGCAGCTTATCACAAGGCACTCAGTTACCGAGCC...GTATGGCTGTCTCAGCACAATACTCGACATAACTGCAGAGCTGATGTGGCTCAG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR GCA 90 bp ATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGGGCTCGGTAACTGAGTaGCTTGTGATAAGCTGCGAT +
Preference number: 4 (lower is better)
Translates to: ILKGLKPGCLSHISSAVMGSVTE*LVISCD
Trigger: ATCGCAGCTTATCACAAGGCACTCAGTTACCGAGCC...CATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR GCA 90 bp GGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGTCGAGTATGGCTCGGTAACTGAGTaGCTTGTGATAAGCTGCGAT +
Preference number: 4 (lower is better)
Translates to: GIKTRVPEPHQLCSYVEYGSVTE*LVISCD
Trigger: ATCGCAGCTTATCACAAGGCACTCAGTTACCGAGCC...ATACTCGACATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR GCA 90 bp CCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTACCTAACCCTGAACTaGTCATGCTATTTGTCCTGC +
Preference number: 4 (lower is better)
Translates to: PDPQGIKTRVPEPHQLCSYLTLN*SCYLSC
Trigger: GCAGGACAAATAGCATGAGCAGTTCAGGGTTAGGTA...ACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR GCA 90 bp AGTTATGTCGAGTATTGTGCTGAGACAGCCATACCCCAAGAAAAGGGAAGTCTTTGGCTCCATGCCTGGTaGCCTGGTAATCCATACCCG +
Preference number: 4 (lower is better)
Translates to: SYVEYCAETAIPQEKGSLWLHAW*PGNPYP
Trigger: CGGGTATGGATTACCAGGGCACCAGGCATGGAGCCA...AAGACTTCCCTTTTCTTGGGGTATGGCTGTCTCAGCACAATACTCGACATAACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR GCA 90 bp CAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGTCGAGCCTAGTGCACTTTGTTaGCCGTATAAACTTGCCCCA +
Preference number: 4 (lower is better)
Translates to: QGIKTRVPEPHQLCSYVEPSALC*PYKLAP
Trigger: TGGGGCAAGTTTATACGGGCAACAAAGTGCACTAGG...CTCGACATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CCA 90 bp CTGAGCCACATCAGCTCTGCAGTTATGTCGAGTATTGTGCTGAGACAGCCATACCAAAATACCCCTGCTTaGAGATGGAGGCGTGTGAAG +
Preference number: 4 (lower is better)
Translates to: LSHISSAVMSSIVLRQPYQNTPA*RWRRVK
Trigger: CTTCACACGCCTCCATCTCCAAGCAGGGGTATTTTG...GTATGGCTGTCTCAGCACAATACTCGACATAACTGCAGAGCTGATGTGGCTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CCA 90 bp TTGCTCATTCTGGATGAAGCTCAGTTACAGCGCAGCCCTGGAGCCCCAGAGACTTATCTCCAGGGAATTTaGGTCCATCTGTACTTGAAG +
Preference number: 4 (lower is better)
Translates to: LLILDEAQLQRSPGAPETYLQGI*VHLYLK
Trigger: CTTCAAGTACAGATGGACCCAAATTCCCTGGAGATA...AGTCTCTGGGGCTCCAGGGCTGCGCTGTAACTGAGCTTCATCCAGAATGAGCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CCA 90 bp ATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGAAGATGTACCATTCCTaGGTCTGTCTCTGCTGCCCT +
Preference number: 4 (lower is better)
Translates to: ILKGLKPGCLSHISSAVMKMYHS*VCLCCP
Trigger: AGGGCAGCAGAGACAGACCCAGGAATGGTACATCTT...CATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CCA 90 bp AAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGTCGAGTATTGTGCTAAGATGTACCATTCCTaGGTCTGTCTCTGCTGCCCT +
Preference number: 4 (lower is better)
Translates to: KTRVPEPHQLCSYVEYCAKMYHS*VCLCCP
Trigger: AGGGCAGCAGAGACAGACCCAGGAATGGTACATCTT...AGCACAATACTCGACATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CCA 90 bp GGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGTCGAGTATACCCGCTCCTCCTTGTaGTATCTCCAATCACGGTTA +
Preference number: 4 (lower is better)
Translates to: GIKTRVPEPHQLCSYVEYTRSSL*YLQSRL
Trigger: TAACCGTGATTGGAGATACCACAAGGAGGAGCGGGT...ATACTCGACATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CCA 90 bp GTAAGCCAATTGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATGTTGGTTTTCATTGTTaGCTCCATGCCTGGTGCCCT +
Preference number: 4 (lower is better)
Translates to: VSQLPDPQGIKTRVPEPHVGFHC*LHAWCP
Trigger: AGGGCACCAGGCATGGAGCCAACAATGAAAACCAAC...ATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCAATTGGCTTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CCA 90 bp AAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGTCGAGTATTGTGCTGTTGGTTTTCATTGTTaGCTCCATGCCTGGTGCCCT +
Preference number: 4 (lower is better)
Translates to: KTRVPEPHQLCSYVEYCAVGFHC*LHAWCP
Trigger: AGGGCACCAGGCATGGAGCCAACAATGAAAACCAAC...AGCACAATACTCGACATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CCA 90 bp TCGAGAAGGCTGTTGCTTTGGCATACATATTATGCTTGGCGAGCTTCTGTTGGGTTGCTACTCTGGGGATaGGAAAGCTCAGAGCTGGAG +
Preference number: 4 (lower is better)
Translates to: SRRLLLWHTYYAWRASVGLLLWG*ESSELE
Trigger: CTCCAGCTCTGAGCTTTCCCATCCCCAGAGTAGCAA...CCCAACAGAAGCTCGCCAAGCATAATATGTATGCCAAAGCAACAGCCTTCTCGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169507.8
ENSMUST00000218490.2
3UTR CAA 72 bp GTCGAGAAGGCTGTTGCTTTGGCATACATATTATGCTaGGCGAGCTTCTGTTGGGGCTACCTAACCCTGAAC +
Preference number: 4 (lower is better)
Translates to: VEKAVALAYILC*ASFCWGYLTLN
Trigger: GTTCAGGGTTAGGTAGCCCCAACAGAAGCTCGCCAAGCATAATATGTATGCCAAAGCAACAGCCTTCTCGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000169507.8
ENSMUST00000169576.8
ENSMUST00000218490.2
3UTR CAA 72 bp ATGCCTGGTGCCCTGGTAATCCATACCCGCTCCTCCTaGTGGTATCTCCAATCACGGTTAAAAAGTTCTACC +
Preference number: 4 (lower is better)
Translates to: MPGALVIHTRSS*WYLQSRLKSST
Trigger: GGTAGAACTTTTTAACCGTGATTGGAGATACCACAAGGAGGAGCGGGTATGGATTACCAGGGCACCAGGCAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
CDS-3UTR TCA 90 bp GGCCCTTTAGTGCACAGGGCGACAAAGTCCCCTGACCAGCAGTTCCAGAATGTCTACAAACTTCTTTCTTaGAGCACCAAACATGCTGTT +
Preference number: 4 (lower is better)
Translates to: GPLVHRATKSPDQQFQNVYKLLS*STKHAV
Trigger: AACAGCATGTTTGGTGCTTCAAGAAAGAAGTTTGTA...GACATTCTGGAACTGCTGGTCAGGGGACTTTGTCGCCCTGTGCACTAAAGGGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105267.8
CDS-3UTR TCA 90 bp CAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGTCGAGAAGCTGCGATTTAACTaGGGGGTATTGTTGCTCATC +
Preference number: 4 (lower is better)
Translates to: QGIKTRVPEPHQLCSYVEKLRFN*GVLLLI
Trigger: GATGAGCAACAATACCCCTCAGTTAAATCGCAGCTT...CTCGACATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp CAATTGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCAAGCTGCGATTTAACTaGGGGGTATTGTTGCTCATC +
Preference number: 4 (lower is better)
Translates to: QLPDPQGIKTRVPEPHQLKLRFN*GVLLLI
Trigger: GATGAGCAACAATACCCCTCAGTTAAATCGCAGCTT...GAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCAATTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp AGTTATGTCGAGTATTGTGCTGAGACAGCCATACCCCAAGAAAAGGGAAGTCTTGGAATTCCAATGCCCTaGCCAACCTGGGAGTGGTTC +
Preference number: 4 (lower is better)
Translates to: SYVEYCAETAIPQEKGSLGIPMP*PTWEWF
Trigger: GAACCACTCCCAGGTTGGTCAGGGCATTGGAATTCC...AAGACTTCCCTTTTCTTGGGGTATGGCTGTCTCAGCACAATACTCGACATAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp TGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGCTGTCGTCATTACTTaGCGTTGGATCTTTATAGCT +
Preference number: 4 (lower is better)
Translates to: CQILKGLKPGCLSHISSAAVVIT*RWIFIA
Trigger: AGCTATAAAGATCCAACGTCAAGTAATGACGACAGC...TGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp CTGAGCCACATCAGCTCTGCAGTTATGTCGAGTATTGTGCTGAGACAGCCATACTCCGTCACCATCCCTTaGGGAATGTTAGTAACTCGA +
Preference number: 4 (lower is better)
Translates to: LSHISSAVMSSIVLRQPYSVTIP*GMLVTR
Trigger: TCGAGTTACTAACATTCCTCAAGGGATGGTGACGGA...GTATGGCTGTCTCAGCACAATACTCGACATAACTGCAGAGCTGATGTGGCTCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp ATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGTCCGTCACCATCCCTTaGGGAATGTTAGTAACTCGA +
Preference number: 4 (lower is better)
Translates to: ILKGLKPGCLSHISSAVMSVTIP*GMLVTR
Trigger: TCGAGTTACTAACATTCCTCAAGGGATGGTGACGGA...CATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp GATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATTCCGTCACCATCCCTTaGGGAATGTTAGTAACTCGA +
Preference number: 4 (lower is better)
Translates to: DPQGIKTRVPEPHQLCSYSVTIP*GMLVTR
Trigger: TCGAGTTACTAACATTCCTCAAGGGATGGTGACGGA...ATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp TGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCACAGGTGAGTTCAGATTaGGGCCTAATGTTGTTAAGT +
Preference number: 4 (lower is better)
Translates to: CQILKGLKPGCLSHISSAQVSSD*GLMLLS
Trigger: ACTTAACAACATTAGGCCTCAATCTGAACTCACCTG...TGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp AAGGCAGGACCTCAAATGGTGACCCTTTCTTTACGTAAGCCAATTGCCAGATCCCATATCGGCCAAGTTTaGTTGCAGCCAGCTTATCCC +
Preference number: 4 (lower is better)
Translates to: KAGPQMVTLSLRKPIARSHIGQV*LQPAYP
Trigger: GGGATAAGCTGGCTGCAATCAAACTTGGCCGATATG...GGATCTGGCAATTGGCTTACGTAAAGAAAGGGTCACCATTTGAGGTCCTGCCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR GCA 90 bp CAATTGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTACCTAACCCTGAACTaGTCATGCTATTTGTCCTGC +
Preference number: 4 (lower is better)
Translates to: QLPDPQGIKTRVPEPHQLYLTLN*SCYLSC
Trigger: GCAGGACAAATAGCATGAGCAGTTCAGGGTTAGGTA...GAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCAATTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR GCA 90 bp CCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTTGGCATACATATTATaGTTGGCGAGCTTCTGTTGG +
Preference number: 4 (lower is better)
Translates to: PDPQGIKTRVPEPHQLCSLAYIL*LASFCW
Trigger: CCAACAGAAGCTCGCCAAGCATAATATGTATGCCAA...ACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR GCA 90 bp ATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGTTAATGGAGTTGGGTTaGCGCTCCCTTCCCTTCTAT +
Preference number: 4 (lower is better)
Translates to: ILKGLKPGCLSHISSAVMLMELG*RSLPFY
Trigger: ATAGAAGGGAAGGGAGCGGCAACCCAACTCCATTAA...CATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR GCA 90 bp GATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATTTAATGGAGTTGGGTTaGCGCTCCCTTCCCTTCTAT +
Preference number: 4 (lower is better)
Translates to: DPQGIKTRVPEPHQLCSYLMELG*RSLPFY
Trigger: ATAGAAGGGAAGGGAGCGGCAACCCAACTCCATTAA...ATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR GCA 90 bp GATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATACTGAGGGGTATTGTTaGTCATCCCCCTCATTGGAA +
Preference number: 4 (lower is better)
Translates to: DPQGIKTRVPEPHQLCSYTEGYC*SSPSLE
Trigger: TTCCAATGAGGGGGATGAGCAACAATACCCCTCAGT...ATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CCA 90 bp CTGAGCCACATCAGCTCTGCAGTTATGTCGAGTATTGTGCTGAGACAGCCATACCCCGCTCATACGTGTTaGTTTTCATTGTTGGCTCCA +
Preference number: 4 (lower is better)
Translates to: LSHISSAVMSSIVLRQPYPAHTC*FSLLAP
Trigger: TGGAGCCAACAATGAAAACCAACACGTATGAGCGGG...GTATGGCTGTCTCAGCACAATACTCGACATAACTGCAGAGCTGATGTGGCTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CCA 90 bp GAGCTTCTGTTGGGGCTACCTAACCCTGAACTGCTCATGCTATTTGTCCTGCTAGGGAAAGCTCAGAGCTaGAGGCTGGTAGTTTCTTTT +
Preference number: 4 (lower is better)
Translates to: ELLLGLPNPELLMLFVLLGKAQS*RLVVSF
Trigger: AAAAGAAACTACCAGCCTCCAGCTCTGAGCTTTCCC...TAGCAGGACAAATAGCATGAGCAGTTCAGGGTTAGGTAGCCCCAACAGAAGCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169507.8
ENSMUST00000218490.2
3UTR CAA 72 bp CATGCTGTTTGTCACCTGTGCAACTTCTTTCAACATTaGCTACTCTGGGGATGGGAAAGCTCAGAGCTGGAG +
Preference number: 4 (lower is better)
Translates to: HAVCHLCNFFQH*LLWGWESSELE
Trigger: CTCCAGCTCTGAGCTTTCCCATCCCCAGAGTAGCAAATGTTGAAAGAAGTTGCACAGGTGACAAACAGCATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
3UTR CAA 72 bp GGTAGTCGCTGTCCACCCCCTCTACAAACTTCTTTCTaGAAGCACCAAACATGCTGTTTGTCACCTGTGCAA +
Preference number: 4 (lower is better)
Translates to: GSRCPPPLQTSF*KHQTCCLSPVQ
Trigger: TTGCACAGGTGACAAACAGCATGTTTGGTGCTTCAAGAAAGAAGTTTGTAGAGGGGGTGGACAGCGACTACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
CDS-3UTR TCA 90 bp GATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATAAGCTGCGATTTAACTaGGGGGTATTGTTGCTCATC +
Preference number: 4 (lower is better)
Translates to: DPQGIKTRVPEPHQLCSYKLRFN*GVLLLI
Trigger: GATGAGCAACAATACCCCTCAGTTAAATCGCAGCTT...ATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp GTAAGCCAATTGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATAAGCTGCGATTTAACTaGGGGGTATTGTTGCTCATC +
Preference number: 4 (lower is better)
Translates to: VSQLPDPQGIKTRVPEPHKLRFN*GVLLLI
Trigger: GATGAGCAACAATACCCCTCAGTTAAATCGCAGCTT...ATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCAATTGGCTTAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp ATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGAAGCTGCGATTTAACTaGGGGGTATTGTTGCTCATC +
Preference number: 4 (lower is better)
Translates to: ILKGLKPGCLSHISSAVMKLRFN*GVLLLI
Trigger: GATGAGCAACAATACCCCTCAGTTAAATCGCAGCTT...CATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp GAATGTCCCATTTTCATATATTGCATCCATGCACACCTCCTAAAAATGAGGTACCCCCTGTTGTTGGCGTaGCGTGGCTCGGTAACTGAG +
Preference number: 4 (lower is better)
Translates to: ECPIFIYCIHAHLLKMRYPLLLA*RGSVTE
Trigger: CTCAGTTACCGAGCCACGTCACGCCAACAACAGGGG...GTACCTCATTTTTAGGAGGTGTGCATGGATGCAATATATGAAAATGGGACATTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR TCA 90 bp AGTTATGTCGAGTATTGTGCTGAGACAGCCATACCCCAAGAAAAGGGAAGTCTTGGAGATGGAGGCGTGTaGAGTGACATTGTTGGTACC +
Preference number: 4 (lower is better)
Translates to: SYVEYCAETAIPQEKGSLGDGGV*SDIVGT
Trigger: GGTACCAACAATGTCACTTCACACGCCTCCATCTCC...AAGACTTCCCTTTTCTTGGGGTATGGCTGTCTCAGCACAATACTCGACATAACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp CAATTGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCGCTGTCGTCATTACTTaGCGTTGGATCTTTATAGCT +
Preference number: 4 (lower is better)
Translates to: QLPDPQGIKTRVPEPHQLAVVIT*RWIFIA
Trigger: AGCTATAAAGATCCAACGTCAAGTAATGACGACAGC...GAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCAATTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp CAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGTCGAGGCTGTCGTCATTACTTaGCGTTGGATCTTTATAGCT +
Preference number: 4 (lower is better)
Translates to: QGIKTRVPEPHQLCSYVEAVVIT*RWIFIA
Trigger: AGCTATAAAGATCCAACGTCAAGTAATGACGACAGC...CTCGACATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp CATCAGCTCTGCAGTTATGTCGAGTATTGTGCTGAGACAGCCATACCCCAAGAATGGAAGTCTATGTCTTaGGGCCGACAAGGTGAAGAA +
Preference number: 4 (lower is better)
Translates to: HQLCSYVEYCAETAIPQEWKSMS*GRQGEE
Trigger: TTCTTCACCTTGTCGGCCTCAAGACATAGACTTCCA...TTCTTGGGGTATGGCTGTCTCAGCACAATACTCGACATAACTGCAGAGCTGATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp AAGGCAGGACCTCAAATGGTGACCCTTTCTTTACGTAAGCCAATTGCCAGATCCTGGAAGTCTATGTCTTaGGGCCGACAAGGTGAAGAA +
Preference number: 4 (lower is better)
Translates to: KAGPQMVTLSLRKPIARSWKSMS*GRQGEE
Trigger: TTCTTCACCTTGTCGGCCTCAAGACATAGACTTCCA...GGATCTGGCAATTGGCTTACGTAAAGAAAGGGTCACCATTTGAGGTCCTGCCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp AGTTATGTCGAGTATTGTGCTGAGACAGCCATACCCCAAGAAAAGGGAAGTCTTAAGGTGGATGGCAGGTaGGGCCGCTCTTCTAATTTG +
Preference number: 4 (lower is better)
Translates to: SYVEYCAETAIPQEKGSLKVDGR*GRSSNL
Trigger: CAAATTAGAAGAGCGGCCTCACCTGCCATCCACCTT...AAGACTTCCCTTTTCTTGGGGTATGGCTGTCTCAGCACAATACTCGACATAACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR GCA 90 bp TGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGAGAAGTCTTGGGATTaGTCATTTGCAGGTTTTGTT +
Preference number: 4 (lower is better)
Translates to: CQILKGLKPGCLSHISSAEKSWD*SFAGFV
Trigger: AACAAAACCTGCAAATGAGCAATCCCAAGACTTCTC...TGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR GCA 90 bp CATCAGCTCTGCAGTTATGTCGAGTATTGTGCTGAGACAGCCATACCCCAAGAACCTAGTGCACTTTGTTaGCCGTATAAACTTGCCCCA +
Preference number: 4 (lower is better)
Translates to: HQLCSYVEYCAETAIPQEPSALC*PYKLAP
Trigger: TGGGGCAAGTTTATACGGGCAACAAAGTGCACTAGG...TTCTTGGGGTATGGCTGTCTCAGCACAATACTCGACATAACTGCAGAGCTGATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR GCA 90 bp CATCAGCTCTGCAGTTATGTCGAGTATTGTGCTGAGACAGCCATACCCCAAGAAACTGAGGGGTATTGTTaGTCATCCCCCTCATTGGAA +
Preference number: 4 (lower is better)
Translates to: HQLCSYVEYCAETAIPQETEGYC*SSPSLE
Trigger: TTCCAATGAGGGGGATGAGCAACAATACCCCTCAGT...TTCTTGGGGTATGGCTGTCTCAGCACAATACTCGACATAACTGCAGAGCTGATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CCA 90 bp CTGAGCCACATCAGCTCTGCAGTTATGTCGAGTATTGTGCTGAGACAGCCATACCATACATATTATGCTTaGCGAGCTTCTGTTGGGGCT +
Preference number: 4 (lower is better)
Translates to: LSHISSAVMSSIVLRQPYHTYYA*RASVGA
Trigger: AGCCCCAACAGAAGCTCGCCAAGCATAATATGTATG...GTATGGCTGTCTCAGCACAATACTCGACATAACTGCAGAGCTGATGTGGCTCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CCA 90 bp CCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTGTATTGAGAAGTCTTaGGATTGCTCATTTGCAGGT +
Preference number: 4 (lower is better)
Translates to: PDPQGIKTRVPEPHQLCSCIEKS*DCSFAG
Trigger: ACCTGCAAATGAGCAATCCCAAGACTTCTCAATACA...ACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CCA 90 bp TGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCATTGGATCTTTATAGCTaGAACCAGGTAATGCTGGAA +
Preference number: 4 (lower is better)
Translates to: CQILKGLKPGCLSHISSALDLYS*NQVMLE
Trigger: TTCCAGCATTACCTGGTTCCAGCTATAAAGATCCAA...TGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CCA 90 bp CATCAGCTCTGCAGTTATGTCGAGTATTGTGCTGAGACAGCCATACCCCAAGAACCCGCTCATACGTGTTaGTTTTCATTGTTGGCTCCA +
Preference number: 4 (lower is better)
Translates to: HQLCSYVEYCAETAIPQEPAHTC*FSLLAP
Trigger: TGGAGCCAACAATGAAAACCAACACGTATGAGCGGG...TTCTTGGGGTATGGCTGTCTCAGCACAATACTCGACATAACTGCAGAGCTGATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CCA 90 bp AGACATACTGTTCACAGTAAAAGGCTGTCGAGAAGGCTGTTGCTTTGGCATACATTGCTACTCTGGGGATaGGAAAGCTCAGAGCTGGAG +
Preference number: 4 (lower is better)
Translates to: RHTVHSKRLSRRLLLWHTLLLWG*ESSELE
Trigger: CTCCAGCTCTGAGCTTTCCCATCCCCAGAGTAGCAA...TGTATGCCAAAGCAACAGCCTTCTCGACAGCCTTTTACTGTGAACAGTATGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169507.8
CDS-3UTR TCA 90 bp TGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCATACAAACTTCTTTCTTaGAGCACCAAACATGCTGTT +
Preference number: 4 (lower is better)
Translates to: CQILKGLKPGCLSHISSAYKLLS*STKHAV
Trigger: AACAGCATGTTTGGTGCTTCAAGAAAGAAGTTTGTA...TGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105267.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp GTAAGCCAATTGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATATCTTCGTTGTGTATTaGGAAGTCTTGGGATTGCTC +
Preference number: 4 (lower is better)
Translates to: VSQLPDPQGIKTRVPEPHIFVVY*EVLGLL
Trigger: GAGCAATCCCAAGACTTCTCAATACACAACGAAGAT...ATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCAATTGGCTTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp GGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGTCGAGTATATCTTCGTTGTGTATTaGGAAGTCTTGGGATTGCTC +
Preference number: 4 (lower is better)
Translates to: GIKTRVPEPHQLCSYVEYIFVVY*EVLGLL
Trigger: GAGCAATCCCAAGACTTCTCAATACACAACGAAGAT...ATACTCGACATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp GATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATATCTTCGTTGTGTATTaGGAAGTCTTGGGATTGCTC +
Preference number: 4 (lower is better)
Translates to: DPQGIKTRVPEPHQLCSYIFVVY*EVLGLL
Trigger: GAGCAATCCCAAGACTTCTCAATACACAACGAAGAT...ATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp TCTGTCAGTGTACTTGCTTGTCTTTATAGACCCAAGTCTGTCTGCTGGCAAAAAGGGTCCATCTGTACTTaGAGTCGTCTTCCCCGATGT +
Preference number: 4 (lower is better)
Translates to: SVSVLACLYRPKSVCWQKGSICT*SRLPRC
Trigger: ACATCGGGGAAGACGACTTCAAGTACAGATGGACCC...TTTTTGCCAGCAGACAGACTTGGGTCTATAAAGACAAGCAAGTACACTGACAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp AAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGTCGAGTATTGTGCTCAGGTGAGTTCAGATTaGGGCCTAATGTTGTTAAGT +
Preference number: 4 (lower is better)
Translates to: KTRVPEPHQLCSYVEYCAQVSSD*GLMLLS
Trigger: ACTTAACAACATTAGGCCTCAATCTGAACTCACCTG...AGCACAATACTCGACATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp GATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATCAGGTGAGTTCAGATTaGGGCCTAATGTTGTTAAGT +
Preference number: 4 (lower is better)
Translates to: DPQGIKTRVPEPHQLCSYQVSSD*GLMLLS
Trigger: ACTTAACAACATTAGGCCTCAATCTGAACTCACCTG...ATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp TATTGCATCCATGCACACCTCCTAAAAATGAGGTACAGCAGGGCAAACATTTTCAAGGTGGATGGCAGGTaGGGCCGCTCTTCTAATTTG +
Preference number: 4 (lower is better)
Translates to: YCIHAHLLKMRYSRANIFKVDGR*GRSSNL
Trigger: CAAATTAGAAGAGCGGCCTCACCTGCCATCCACCTT...GAAAATGTTTGCCCTGCTGTACCTCATTTTTAGGAGGTGTGCATGGATGCAATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR GCA 90 bp GATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATTGCCTTGTGATAAGCTaGGATTTAACTGAGGGGTAT +
Preference number: 4 (lower is better)
Translates to: DPQGIKTRVPEPHQLCSYCLVIS*DLTEGY
Trigger: ATACCCCTCAGTTAAATCGCAGCTTATCACAAGGCA...ATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR GCA 90 bp AGTTATGTCGAGTATTGTGCTGAGACAGCCATACCCCAAGAAAAGGGAAGTCTTGGCTCGGTAACTGAGTaGCTTGTGATAAGCTGCGAT +
Preference number: 4 (lower is better)
Translates to: SYVEYCAETAIPQEKGSLGSVTE*LVISCD
Trigger: ATCGCAGCTTATCACAAGGCACTCAGTTACCGAGCC...AAGACTTCCCTTTTCTTGGGGTATGGCTGTCTCAGCACAATACTCGACATAACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR GCA 90 bp CATCAGCTCTGCAGTTATGTCGAGTATTGTGCTGAGACAGCCATACCCCAAGAATACCTAACCCTGAACTaGTCATGCTATTTGTCCTGC +
Preference number: 4 (lower is better)
Translates to: HQLCSYVEYCAETAIPQEYLTLN*SCYLSC
Trigger: GCAGGACAAATAGCATGAGCAGTTCAGGGTTAGGTA...TTCTTGGGGTATGGCTGTCTCAGCACAATACTCGACATAACTGCAGAGCTGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR GCA 90 bp GATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATTTGGCATACATATTATaGTTGGCGAGCTTCTGTTGG +
Preference number: 4 (lower is better)
Translates to: DPQGIKTRVPEPHQLCSYLAYIL*LASFCW
Trigger: CCAACAGAAGCTCGCCAAGCATAATATGTATGCCAA...ATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR GCA 90 bp CTGAGCCACATCAGCTCTGCAGTTATGTCGAGTATTGTGCTGAGACAGCCATACTTGGCATACATATTATaGTTGGCGAGCTTCTGTTGG +
Preference number: 4 (lower is better)
Translates to: LSHISSAVMSSIVLRQPYLAYIL*LASFCW
Trigger: CCAACAGAAGCTCGCCAAGCATAATATGTATGCCAA...GTATGGCTGTCTCAGCACAATACTCGACATAACTGCAGAGCTGATGTGGCTCAG
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR GCA 90 bp AAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGTCGAGTATTGTGCTTTGGCATACATATTATaGTTGGCGAGCTTCTGTTGG +
Preference number: 4 (lower is better)
Translates to: KTRVPEPHQLCSYVEYCALAYIL*LASFCW
Trigger: CCAACAGAAGCTCGCCAAGCATAATATGTATGCCAA...AGCACAATACTCGACATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR GCA 90 bp CAATTGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGTCGAGAAGGCTGTTaGTTTGGCATACATATTATG +
Preference number: 4 (lower is better)
Translates to: QLPDPQGIKTRVPEPHQLCREGC*FGIHIM
Trigger: CATAATATGTATGCCAAAGCAACAGCCTTCTCGACA...GAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCAATTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR GCA 90 bp TTATGCTTGGCGAGCTTCTGTTGGGGCTACCTAACCCTGAACTGCTCATGCTATTTGAAGCACCAAACATaGTGTTTGTCACCTGTGCAA +
Preference number: 4 (lower is better)
Translates to: LCLASFCWGYLTLNCSCYLKHQT*CLSPVQ
Trigger: TTGCACAGGTGACAAACAGCATGTTTGGTGCTTCAA...ATAGCATGAGCAGTTCAGGGTTAGGTAGCCCCAACAGAAGCTCGCCAAGCATAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169507.8
ENSMUST00000218490.2
CDS-3UTR GCA 90 bp GGCTGTTGCTTTGGCATACATATTATGCTTGGCGAGCTTCTGTTGGGGCTACCTTTGAAGCACCAAACATaGTGTTTGTCACCTGTGCAA +
Preference number: 4 (lower is better)
Translates to: GCCFGIHIMLGELLLGLPLKHQT*CLSPVQ
Trigger: TTGCACAGGTGACAAACAGCATGTTTGGTGCTTCAA...AGGTAGCCCCAACAGAAGCTCGCCAAGCATAATATGTATGCCAAAGCAACAGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169507.8
ENSMUST00000218490.2
CDS-3UTR CCA 90 bp CAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGTCGAGTGTATTGAGAAGTCTTaGGATTGCTCATTTGCAGGT +
Preference number: 4 (lower is better)
Translates to: QGIKTRVPEPHQLCSYVECIEKS*DCSFAG
Trigger: ACCTGCAAATGAGCAATCCCAAGACTTCTCAATACA...CTCGACATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CCA 90 bp GATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATTATCTCCAGGGAATTTaGGTCCATCTGTACTTGAAG +
Preference number: 4 (lower is better)
Translates to: DPQGIKTRVPEPHQLCSYYLQGI*VHLYLK
Trigger: CTTCAAGTACAGATGGACCCAAATTCCCTGGAGATA...ATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CCA 90 bp AAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGTCGAGTATTGTGCTTATCTCCAGGGAATTTaGGTCCATCTGTACTTGAAG +
Preference number: 4 (lower is better)
Translates to: KTRVPEPHQLCSYVEYCAYLQGI*VHLYLK
Trigger: CTTCAAGTACAGATGGACCCAAATTCCCTGGAGATA...AGCACAATACTCGACATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CCA 90 bp AGTTATGTCGAGTATTGTGCTGAGACAGCCATACCCCAAGAAAAGGGAAGTCTTAAGATGTACCATTCCTaGGTCTGTCTCTGCTGCCCT +
Preference number: 4 (lower is better)
Translates to: SYVEYCAETAIPQEKGSLKMYHS*VCLCCP
Trigger: AGGGCAGCAGAGACAGACCCAGGAATGGTACATCTT...AAGACTTCCCTTTTCTTGGGGTATGGCTGTCTCAGCACAATACTCGACATAACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CCA 90 bp TGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCATTGTCATATTCCAGATaGAACTCCTTAGCTACTTTC +
Preference number: 4 (lower is better)
Translates to: CQILKGLKPGCLSHISSALSYSR*NSLATF
Trigger: GAAAGTAGCTAAGGAGTTCCATCTGGAATATGACAA...TGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CCA 90 bp CCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTTGTCATATTCCAGATaGAACTCCTTAGCTACTTTC +
Preference number: 4 (lower is better)
Translates to: PDPQGIKTRVPEPHQLCSLSYSR*NSLATF
Trigger: GAAAGTAGCTAAGGAGTTCCATCTGGAATATGACAA...ACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CCA 90 bp GTGATAAGCTGCGATTTAACTGAGGGGTATTGTTGCTCATCCCCCTCATTGGAACAACATTTGCTACTCTaGGGATGGGAAAGCTCAGAG +
Preference number: 4 (lower is better)
Translates to: VISCDLTEGYCCSSPSLEQHLLL*GWESSE
Trigger: CTCTGAGCTTTCCCATCCCCAGAGTAGCAAATGTTG...TTCCAATGAGGGGGATGAGCAACAATACCCCTCAGTTAAATCGCAGCTTATCAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000169507.8
ENSMUST00000218490.2
3UTR CAA 72 bp GATTTAACTGAGGGGTATTGTTGCTCATCCCCCTCATaGGAAGGCCTAGTGCACTTTGTTGCCCGTATAAAC +
Preference number: 4 (lower is better)
Translates to: DLTEGYCCSSPS*EGLVHFVARIN
Trigger: GTTTATACGGGCAACAAAGTGCACTAGGCCTTCCAATGAGGGGGATGAGCAACAATACCCCTCAGTTAAATC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000169507.8
ENSMUST00000169576.8
ENSMUST00000218490.2
CDS-3UTR TCA 90 bp CAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGTCGAGTTCATTCCAAATGCCTaGTTCCTGTTCATTCCAAAT +
Preference number: 4 (lower is better)
Translates to: QGIKTRVPEPHQLCSYVEFIPNA*FLFIPN
Trigger: ATTTGGAATGAACAGGAATCAGGCATTTGGAATGAA...CTCGACATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp CAATTGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTTCATTCCAAATGCCTaGTTCCTGTTCATTCCAAAT +
Preference number: 4 (lower is better)
Translates to: QLPDPQGIKTRVPEPHQLFIPNA*FLFIPN
Trigger: ATTTGGAATGAACAGGAATCAGGCATTTGGAATGAA...GAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCAATTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp AGTTATGTCGAGTATTGTGCTGAGACAGCCATACCCCAAGAAAAGGGAAGTCTTTCCGTCACCATCCCTTaGGGAATGTTAGTAACTCGA +
Preference number: 4 (lower is better)
Translates to: SYVEYCAETAIPQEKGSLSVTIP*GMLVTR
Trigger: TCGAGTTACTAACATTCCTCAAGGGATGGTGACGGA...AAGACTTCCCTTTTCTTGGGGTATGGCTGTCTCAGCACAATACTCGACATAACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp GGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGTCGAGTATCTACTTTCCTCCAGTTaGGACAGTCAAAGAAATAGT +
Preference number: 4 (lower is better)
Translates to: GIKTRVPEPHQLCSYVEYLLSSS*DSQRNS
Trigger: ACTATTTCTTTGACTGTCTCAACTGGAGGAAAGTAG...ATACTCGACATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR GCA 90 bp TCGCTCATCCTTCCAAATGAAATACGAGAAGGATCTTCACATAAAAATGCACAATGGCTCCATGCCTGGTaGCCTGGTAATCCATACCCG +
Preference number: 4 (lower is better)
Translates to: SLILPNEIREGSSHKNAQWLHAW*PGNPYP
Trigger: CGGGTATGGATTACCAGGGCACCAGGCATGGAGCCA...TTGTGCATTTTTATGTGAAGATCCTTCTCGTATTTCATTTGGAAGGATGAGCGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR GCA 90 bp CATCCCCGCCGTTCATGTAATACAGATAGAAGAGGAGGTCTTCTCCATATCGGCACGATGGGATTCTTCTaGTCTGGTAGTTTCTTTTCT +
Preference number: 4 (lower is better)
Translates to: HPRRSCNTDRRGGLLHIGTMGFF*SGSFFS
Trigger: AGAAAAGAAACTACCAGAGCAGAAGAATCCCATCGT...GCCGATATGGAGAAGACCTCCTCTTCTATCTGTATTACATGAACGGCGGGGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
CDS-3UTR CCA 90 bp TCTGTCAGTGTACTTGCTTGTCTTTATAGACCCAAGTCTGTCTGCTGGCAAAAACAAAATACCCCTGCTTaGAGATGGAGGCGTGTGAAG +
Preference number: 4 (lower is better)
Translates to: SVSVLACLYRPKSVCWQKQNTPA*RWRRVK
Trigger: CTTCACACGCCTCCATCTCCAAGCAGGGGTATTTTG...TTTTTGCCAGCAGACAGACTTGGGTCTATAAAGACAAGCAAGTACACTGACAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CCA 90 bp TCTGTCAGTGTACTTGCTTGTCTTTATAGACCCAAGTCTGTCTGCTGGCAAAAAACCCGCTCCTCCTTGTaGTATCTCCAATCACGGTTA +
Preference number: 4 (lower is better)
Translates to: SVSVLACLYRPKSVCWQKTRSSL*YLQSRL
Trigger: TAACCGTGATTGGAGATACCACAAGGAGGAGCGGGT...TTTTTGCCAGCAGACAGACTTGGGTCTATAAAGACAAGCAAGTACACTGACAGA
46% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CCA 90 bp TCTGTCAGTGTACTTGCTTGTCTTTATAGACCCAAGTCTGTCTGCTGGCAAAAAGTTGGTTTTCATTGTTaGCTCCATGCCTGGTGCCCT +
Preference number: 4 (lower is better)
Translates to: SVSVLACLYRPKSVCWQKVGFHC*LHAWCP
Trigger: AGGGCACCAGGCATGGAGCCAACAATGAAAACCAAC...TTTTTGCCAGCAGACAGACTTGGGTCTATAAAGACAAGCAAGTACACTGACAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CCA 90 bp AGTAAAAGGCTGTCGAGAAGGCTGTTGCTTTGGCATACATATTATGCTTGGCGAGGGAAAGCTCAGAGCTaGAGGCTGGTAGTTTCTTTT +
Preference number: 4 (lower is better)
Translates to: SKRLSRRLLLWHTYYAWRGKAQS*RLVVSF
Trigger: AAAAGAAACTACCAGCCTCCAGCTCTGAGCTTTCCC...TCGCCAAGCATAATATGTATGCCAAAGCAACAGCCTTCTCGACAGCCTTTTACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169507.8
ENSMUST00000218490.2
3UTR CAA 72 bp TGCTTTGGCATACATATTATGCTTGGCGAGCTTCTGTaGGGGCTACCTAACCCTGAACTGCTCATGCTATTT +
Preference number: 4 (lower is better)
Translates to: CFGIHIMLGELL*GLPNPELLMLF
Trigger: AAATAGCATGAGCAGTTCAGGGTTAGGTAGCCCCAACAGAAGCTCGCCAAGCATAATATGTATGCCAAAGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000169507.8
ENSMUST00000169576.8
ENSMUST00000218490.2
CDS-3UTR TCA 90 bp GTGTCTGGGGGACACAATGACACCCAAGGACTGCCTATCCAAAATTATCTCTGCTACAAACTTCTTTCTTaGAGCACCAAACATGCTGTT +
Preference number: 4 (lower is better)
Translates to: VSGGHNDTQGLPIQNYLCYKLLS*STKHAV
Trigger: AACAGCATGTTTGGTGCTTCAAGAAAGAAGTTTGTA...GCAGAGATAATTTTGGATAGGCAGTCCTTGGGTGTCATTGTGTCCCCCAGACAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020374.6
CDS-3UTR TCA 90 bp TCTAAAATCTCAGGACAAGAACAGAGCATACACACTACAAACAGAAAACCCTTATTGAGACAGCTGACCTaGCGTAGATGGCGATGCCAG +
Preference number: 4 (lower is better)
Translates to: SKISGQEQSIHTTNRKPLLRQLT*RRWRCQ
Trigger: CTGGCATCGCCATCTACGTCAGGTCAGCTGTCTCAA...TAAGGGTTTTCTGTTTGTAGTGTGTATGCTCTGTTCTTGTCCTGAGATTTTAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020374.6
CDS-3UTR TCA 90 bp GATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATTTCATTCCAAATGCCTaGTTCCTGTTCATTCCAAAT +
Preference number: 4 (lower is better)
Translates to: DPQGIKTRVPEPHQLCSYFIPNA*FLFIPN
Trigger: ATTTGGAATGAACAGGAATCAGGCATTTGGAATGAA...ATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR GCA 90 bp CATCAGCTCTGCAGTTATGTCGAGTATTGTGCTGAGACAGCCATACCCCAAGAATGTCGAGAAGGCTGTTaGTTTGGCATACATATTATG +
Preference number: 4 (lower is better)
Translates to: HQLCSYVEYCAETAIPQECREGC*FGIHIM
Trigger: CATAATATGTATGCCAAAGCAACAGCCTTCTCGACA...TTCTTGGGGTATGGCTGTCTCAGCACAATACTCGACATAACTGCAGAGCTGATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR GCA 90 bp AAGGCAGGACCTCAAATGGTGACCCTTTCTTTACGTAAGCCAATTGCCAGATCCTGTCGAGAAGGCTGTTaGTTTGGCATACATATTATG +
Preference number: 4 (lower is better)
Translates to: KAGPQMVTLSLRKPIARSCREGC*FGIHIM
Trigger: CATAATATGTATGCCAAAGCAACAGCCTTCTCGACA...GGATCTGGCAATTGGCTTACGTAAAGAAAGGGTCACCATTTGAGGTCCTGCCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR GCA 90 bp AAGGCAGGACCTCAAATGGTGACCCTTTCTTTACGTAAGCCAATTGCCAGATCCGAGAAGTCTTGGGATTaGTCATTTGCAGGTTTTGTT +
Preference number: 4 (lower is better)
Translates to: KAGPQMVTLSLRKPIARSEKSWD*SFAGFV
Trigger: AACAAAACCTGCAAATGAGCAATCCCAAGACTTCTC...GGATCTGGCAATTGGCTTACGTAAAGAAAGGGTCACCATTTGAGGTCCTGCCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR GCA 90 bp CATCAGCTCTGCAGTTATGTCGAGTATTGTGCTGAGACAGCCATACCCCAAGAAGAGAAGTCTTGGGATTaGTCATTTGCAGGTTTTGTT +
Preference number: 4 (lower is better)
Translates to: HQLCSYVEYCAETAIPQEEKSWD*SFAGFV
Trigger: AACAAAACCTGCAAATGAGCAATCCCAAGACTTCTC...TTCTTGGGGTATGGCTGTCTCAGCACAATACTCGACATAACTGCAGAGCTGATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR GCA 90 bp TGCCTTGTGATAAGCTGCGATTTAACTGAGGGGTATTGTTGCTCATCCCCCTCAGCTGTTTGTCACCTGTaGAACTTCTTTCAACATTTG +
Preference number: 4 (lower is better)
Translates to: CLVISCDLTEGYCCSSPSAVCHL*NFFQHL
Trigger: CAAATGTTGAAAGAAGTTGCACAGGTGACAAACAGC...TGAGGGGGATGAGCAACAATACCCCTCAGTTAAATCGCAGCTTATCACAAGGCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000169507.8
ENSMUST00000218490.2
CDS-3UTR CCA 90 bp CTGACCAGCAGTTCCAGAATGTCCCATTTTCATATATTGCATCCATGCACACCTCATACATATTATGCTTaGCGAGCTTCTGTTGGGGCT +
Preference number: 4 (lower is better)
Translates to: LTSSSRMSHFHILHPCTPHTYYA*RASVGA
Trigger: AGCCCCAACAGAAGCTCGCCAAGCATAATATGTATG...AGGTGTGCATGGATGCAATATATGAAAATGGGACATTCTGGAACTGCTGGTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CCA 90 bp AGTTATGTCGAGTATTGTGCTGAGACAGCCATACCCCAAGAAAAGGGAAGTCTTCATACATATTATGCTTaGCGAGCTTCTGTTGGGGCT +
Preference number: 4 (lower is better)
Translates to: SYVEYCAETAIPQEKGSLHTYYA*RASVGA
Trigger: AGCCCCAACAGAAGCTCGCCAAGCATAATATGTATG...AAGACTTCCCTTTTCTTGGGGTATGGCTGTCTCAGCACAATACTCGACATAACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CCA 90 bp CATCAGCTCTGCAGTTATGTCGAGTATTGTGCTGAGACAGCCATACCCCAAGAATTGGATCTTTATAGCTaGAACCAGGTAATGCTGGAA +
Preference number: 4 (lower is better)
Translates to: HQLCSYVEYCAETAIPQELDLYS*NQVMLE
Trigger: TTCCAGCATTACCTGGTTCCAGCTATAAAGATCCAA...TTCTTGGGGTATGGCTGTCTCAGCACAATACTCGACATAACTGCAGAGCTGATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CCA 90 bp AAGGCAGGACCTCAAATGGTGACCCTTTCTTTACGTAAGCCAATTGCCAGATCCTTGGATCTTTATAGCTaGAACCAGGTAATGCTGGAA +
Preference number: 4 (lower is better)
Translates to: KAGPQMVTLSLRKPIARSLDLYS*NQVMLE
Trigger: TTCCAGCATTACCTGGTTCCAGCTATAAAGATCCAA...GGATCTGGCAATTGGCTTACGTAAAGAAAGGGTCACCATTTGAGGTCCTGCCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CCA 90 bp CTGAGCCACATCAGCTCTGCAGTTATGTCGAGTATTGTGCTGAGACAGCCATACTTGTCATATTCCAGATaGAACTCCTTAGCTACTTTC +
Preference number: 4 (lower is better)
Translates to: LSHISSAVMSSIVLRQPYLSYSR*NSLATF
Trigger: GAAAGTAGCTAAGGAGTTCCATCTGGAATATGACAA...GTATGGCTGTCTCAGCACAATACTCGACATAACTGCAGAGCTGATGTGGCTCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CCA 90 bp GTAGATGGCGATGCCAGCATATCTTTCTCTGACCGATGTGGGAACATAGAAGACGAACATGATAAACGATaGGATTCTTCTGCTCTGGTA +
Preference number: 4 (lower is better)
Translates to: VDGDASISFSDRCGNIEDEHDKR*DSSALV
Trigger: TACCAGAGCAGAAGAATCCCATCGTTTATCATGTTC...GTCTTCTATGTTCCCACATCGGTCAGAGAAAGATATGCTGGCATCGCCATCTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
CDS-3UTR CCA 90 bp GAGTGGTTCATCATATTCCTAGGATTCATAGGCAAAATACCCCTGCTTGGAGATCAACATTTGCTACTCTaGGGATGGGAAAGCTCAGAG +
Preference number: 4 (lower is better)
Translates to: EWFIIFLGFIGKIPLLGDQHLLL*GWESSE
Trigger: CTCTGAGCTTTCCCATCCCCAGAGTAGCAAATGTTG...ATCTCCAAGCAGGGGTATTTTGCCTATGAATCCTAGGAATATGATGAACCACTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169507.8
ENSMUST00000218490.2
3UTR CAA 72 bp CATACTGTTCACAGTAAAAGGCTGTCGAGAAGGCTGTaGCTTTGGCATACATATTATGCTTGGCGAGCTTCT +
Preference number: 4 (lower is better)
Translates to: HTVHSKRLSRRL*LWHTYYAWRAS
Trigger: AGAAGCTCGCCAAGCATAATATGTATGCCAAAGCAACAGCCTTCTCGACAGCCTTTTACTGTGAACAGTATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000169507.8
ENSMUST00000169576.8
3UTR CAA 72 bp GTATTGAGAAGTCTTGGGATTGCTCATTTGCAGGTTTaGTTACCATTCCAACGTAAGGAGCTCTTCCAGCCA +
Preference number: 4 (lower is better)
Translates to: VLRSLGIAHLQV*LPFQRKELFQP
Trigger: TGGCTGGAAGAGCTCCTTACGTTGGAATGGTAACAAAACCTGCAAATGAGCAATCCCAAGACTTCTCAATAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
CDS-3UTR TCA 90 bp TGCCTTGTGATAAGCTGCGATTTAACTGAGGGGTATTGTTGCTCATCCCCCTCATACAAACTTCTTTCTTaGAGCACCAAACATGCTGTT +
Preference number: 4 (lower is better)
Translates to: CLVISCDLTEGYCCSSPSYKLLS*STKHAV
Trigger: AACAGCATGTTTGGTGCTTCAAGAAAGAAGTTTGTA...TGAGGGGGATGAGCAACAATACCCCTCAGTTAAATCGCAGCTTATCACAAGGCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000169507.8
ENSMUST00000218490.2
CDS-3UTR TCA 90 bp TCGCTCATCCTTCCAAATGAAATACGAGAAGGATCTTCACATAAAAATGCACAATGGAGGCGTGTGAAGTaGCATTGTTGGTACCCCTGT +
Preference number: 4 (lower is better)
Translates to: SLILPNEIREGSSHKNAQWRRVK*HCWYPC
Trigger: ACAGGGGTACCAACAATGTCACTTCACACGCCTCCA...TTGTGCATTTTTATGTGAAGATCCTTCTCGTATTTCATTTGGAAGGATGAGCGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR TCA 90 bp TCGCTCATCCTTCCAAATGAAATACGAGAAGGATCTTCACATAAAAATGCACAAGGAGATGGAGGCGTGTaGAGTGACATTGTTGGTACC +
Preference number: 4 (lower is better)
Translates to: SLILPNEIREGSSHKNAQGDGGV*SDIVGT
Trigger: GGTACCAACAATGTCACTTCACACGCCTCCATCTCC...TTGTGCATTTTTATGTGAAGATCCTTCTCGTATTTCATTTGGAAGGATGAGCGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR TCA 90 bp AGTTATGTCGAGTATTGTGCTGAGACAGCCATACCCCAAGAAAAGGGAAGTCTTATCTTCGTTGTGTATTaGGAAGTCTTGGGATTGCTC +
Preference number: 4 (lower is better)
Translates to: SYVEYCAETAIPQEKGSLIFVVY*EVLGLL
Trigger: GAGCAATCCCAAGACTTCTCAATACACAACGAAGAT...AAGACTTCCCTTTTCTTGGGGTATGGCTGTCTCAGCACAATACTCGACATAACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR GCA 90 bp AGTTATGTCGAGTATTGTGCTGAGACAGCCATACCCCAAGAAAAGGGAAGTCTTTTGAAGCACCAAACATaGTGTTTGTCACCTGGTAGT +
Preference number: 4 (lower is better)
Translates to: SYVEYCAETAIPQEKGSLLKHQT*CLSPGS
Trigger: ACTACCAGGTGACAAACAGCATGTTTGGTGCTTCAA...AAGACTTCCCTTTTCTTGGGGTATGGCTGTCTCAGCACAATACTCGACATAACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000105267.8
ENSMUST00000169921.8
CDS-3UTR CCA 90 bp GAATGTCCCATTTTCATATATTGCATCCATGCACACCTCCTAAAAATGAGGTACACCCGCTCCTCCTTGTaGTATCTCCAATCACGGTTA +
Preference number: 4 (lower is better)
Translates to: ECPIFIYCIHAHLLKMRYTRSSL*YLQSRL
Trigger: TAACCGTGATTGGAGATACCACAAGGAGGAGCGGGT...GTACCTCATTTTTAGGAGGTGTGCATGGATGCAATATATGAAAATGGGACATTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CCA 90 bp ATGTCCCATTTTCATATATTGCATCCATGCACACCTCCTAAAAATGAGGTACAGACCCGCTCCTCCTTGTaGTATCTCCAATCACGGTTA +
Preference number: 4 (lower is better)
Translates to: MSHFHILHPCTPPKNEVQTRSSL*YLQSRL
Trigger: TAACCGTGATTGGAGATACCACAAGGAGGAGCGGGT...CTGTACCTCATTTTTAGGAGGTGTGCATGGATGCAATATATGAAAATGGGACAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CCA 90 bp AAGGCAGGACCTCAAATGGTGACCCTTTCTTTACGTAAGCCAATTGCCAGATCCTTGTCATATTCCAGATaGAACTCCTTAGCTACTTTC +
Preference number: 4 (lower is better)
Translates to: KAGPQMVTLSLRKPIARSLSYSR*NSLATF
Trigger: GAAAGTAGCTAAGGAGTTCCATCTGGAATATGACAA...GGATCTGGCAATTGGCTTACGTAAAGAAAGGGTCACCATTTGAGGTCCTGCCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
3UTR CAA 72 bp CTTCGTTGTGTATTGAGAAGTCTTGGGATTGCTCATTaGCAGGTTTTGTTACCATTCCAACGTAAGGAGCTC +
Preference number: 4 (lower is better)
Translates to: LRCVLRSLGIAH*QVLLPFQRKEL
Trigger: GAGCTCCTTACGTTGGAATGGTAACAAAACCTGCAAATGAGCAATCCCAAGACTTCTCAATACACAACGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8
CDS-3UTR TCA 90 bp CTGGGAGTGGTTCATCATATTCCTAGGATTCATAGGCAAAATACCCCTGCTTGGTACAAACTTCTTTCTTaGAGCACCAAACATGCTGTT +
Preference number: 4 (lower is better)
Translates to: LGVVHHIPRIHRQNTPAWYKLLS*STKHAV
Trigger: AACAGCATGTTTGGTGCTTCAAGAAAGAAGTTTGTA...CCAAGCAGGGGTATTTTGCCTATGAATCCTAGGAATATGATGAACCACTCCCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169507.8
ENSMUST00000218490.2
CDS-3UTR TCA 90 bp TCTGTCAGTGTACTTGCTTGTCTTTATAGACCCAAGTCTGTCTGCTGGCAAAAAGCTGTCGTCATTACTTaGCGTTGGATCTTTATAGCT +
Preference number: 4 (lower is better)
Translates to: SVSVLACLYRPKSVCWQKAVVIT*RWIFIA
Trigger: AGCTATAAAGATCCAACGTCAAGTAATGACGACAGC...TTTTTGCCAGCAGACAGACTTGGGTCTATAAAGACAAGCAAGTACACTGACAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR GCA 90 bp TATTGCATCCATGCACACCTCCTAAAAATGAGGTACAGCAGGGCAAACATTTTCTTGAAGCACCAAACATaGTGTTTGTCACCTGGTAGT +
Preference number: 4 (lower is better)
Translates to: YCIHAHLLKMRYSRANIFLKHQT*CLSPGS
Trigger: ACTACCAGGTGACAAACAGCATGTTTGGTGCTTCAA...GAAAATGTTTGCCCTGCTGTACCTCATTTTTAGGAGGTGTGCATGGATGCAATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000105267.8
CDS-3UTR GCA 90 bp TCTGTCAGTGTACTTGCTTGTCTTTATAGACCCAAGTCTGTCTGCTGGCAAAAATTGGCATACATATTATaGTTGGCGAGCTTCTGTTGG +
Preference number: 4 (lower is better)
Translates to: SVSVLACLYRPKSVCWQKLAYIL*LASFCW
Trigger: CCAACAGAAGCTCGCCAAGCATAATATGTATGCCAA...TTTTTGCCAGCAGACAGACTTGGGTCTATAAAGACAAGCAAGTACACTGACAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR GCA 90 bp CTGACCAGCAGTTCCAGAATGTCCCATTTTCATATATTGCATCCATGCACACCTTGTCGAGAAGGCTGTTaGTTTGGCATACATATTATG +
Preference number: 4 (lower is better)
Translates to: LTSSSRMSHFHILHPCTPCREGC*FGIHIM
Trigger: CATAATATGTATGCCAAAGCAACAGCCTTCTCGACA...AGGTGTGCATGGATGCAATATATGAAAATGGGACATTCTGGAACTGCTGGTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR GCA 90 bp GAATGTCCCATTTTCATATATTGCATCCATGCACACCTCCTAAAAATGAGGTACTTAATGGAGTTGGGTTaGCGCTCCCTTCCCTTCTAT +
Preference number: 4 (lower is better)
Translates to: ECPIFIYCIHAHLLKMRYLMELG*RSLPFY
Trigger: ATAGAAGGGAAGGGAGCGGCAACCCAACTCCATTAA...GTACCTCATTTTTAGGAGGTGTGCATGGATGCAATATATGAAAATGGGACATTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR GCA 90 bp ATGTCCCATTTTCATATATTGCATCCATGCACACCTCCTAAAAATGAGGTACAGACTGAGGGGTATTGTTaGTCATCCCCCTCATTGGAA +
Preference number: 4 (lower is better)
Translates to: MSHFHILHPCTPPKNEVQTEGYC*SSPSLE
Trigger: TTCCAATGAGGGGGATGAGCAACAATACCCCTCAGT...CTGTACCTCATTTTTAGGAGGTGTGCATGGATGCAATATATGAAAATGGGACAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR GCA 90 bp AGTAAAAGGCTGTCGAGAAGGCTGTTGCTTTGGCATACATATTATGCTTGGCGAACTTCTTTCAACATTTaGTACTCTGGGGATGGGAAA +
Preference number: 4 (lower is better)
Translates to: SKRLSRRLLLWHTYYAWRTSFNI*YSGDGK
Trigger: TTTCCCATCCCCAGAGTAGCAAATGTTGAAAGAAGT...TCGCCAAGCATAATATGTATGCCAAAGCAACAGCCTTCTCGACAGCCTTTTACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169507.8
ENSMUST00000218490.2
CDS-3UTR CCA 90 bp CTGACCAGCAGTTCCAGAATGTCCCATTTTCATATATTGCATCCATGCACACCTTGTATTGAGAAGTCTTaGGATTGCTCATTTGCAGGT +
Preference number: 4 (lower is better)
Translates to: LTSSSRMSHFHILHPCTPCIEKS*DCSFAG
Trigger: ACCTGCAAATGAGCAATCCCAAGACTTCTCAATACA...AGGTGTGCATGGATGCAATATATGAAAATGGGACATTCTGGAACTGCTGGTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CCA 90 bp AGTTATGTCGAGTATTGTGCTGAGACAGCCATACCCCAAGAAAAGGGAAGTCTTTTGGATCTTTATAGCTaGAACCAGGTAATGCTGGAA +
Preference number: 4 (lower is better)
Translates to: SYVEYCAETAIPQEKGSLLDLYS*NQVMLE
Trigger: TTCCAGCATTACCTGGTTCCAGCTATAAAGATCCAA...AAGACTTCCCTTTTCTTGGGGTATGGCTGTCTCAGCACAATACTCGACATAACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp TCGCTCATCCTTCCAAATGAAATACGAGAAGGATCTTCACATAAAAATGCACAATGGAAGTCTATGTCTTaGGGCCGACAAGGTGAAGAA +
Preference number: 4 (lower is better)
Translates to: SLILPNEIREGSSHKNAQWKSMS*GRQGEE
Trigger: TTCTTCACCTTGTCGGCCTCAAGACATAGACTTCCA...TTGTGCATTTTTATGTGAAGATCCTTCTCGTATTTCATTTGGAAGGATGAGCGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR TCA 90 bp TCTGTCAGTGTACTTGCTTGTCTTTATAGACCCAAGTCTGTCTGCTGGCAAAAACTACTTTCCTCCAGTTaGGACAGTCAAAGAAATAGT +
Preference number: 4 (lower is better)
Translates to: SVSVLACLYRPKSVCWQKLLSSS*DSQRNS
Trigger: ACTATTTCTTTGACTGTCTCAACTGGAGGAAAGTAG...TTTTTGCCAGCAGACAGACTTGGGTCTATAAAGACAAGCAAGTACACTGACAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR TCA 90 bp TATTGCATCCATGCACACCTCCTAAAAATGAGGTACAGCAGGGCAAACATTTTCCTACTTTCCTCCAGTTaGGACAGTCAAAGAAATAGT +
Preference number: 4 (lower is better)
Translates to: YCIHAHLLKMRYSRANIFLLSSS*DSQRNS
Trigger: ACTATTTCTTTGACTGTCTCAACTGGAGGAAAGTAG...GAAAATGTTTGCCCTGCTGTACCTCATTTTTAGGAGGTGTGCATGGATGCAATA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR GCA 90 bp TCTGTCAGTGTACTTGCTTGTCTTTATAGACCCAAGTCTGTCTGCTGGCAAAAATGTCGAGAAGGCTGTTaGTTTGGCATACATATTATG +
Preference number: 4 (lower is better)
Translates to: SVSVLACLYRPKSVCWQKCREGC*FGIHIM
Trigger: CATAATATGTATGCCAAAGCAACAGCCTTCTCGACA...TTTTTGCCAGCAGACAGACTTGGGTCTATAAAGACAAGCAAGTACACTGACAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR GCA 90 bp TCGCTCATCCTTCCAAATGAAATACGAGAAGGATCTTCACATAAAAATGCACAATTAATGGAGTTGGGTTaGCGCTCCCTTCCCTTCTAT +
Preference number: 4 (lower is better)
Translates to: SLILPNEIREGSSHKNAQLMELG*RSLPFY
Trigger: ATAGAAGGGAAGGGAGCGGCAACCCAACTCCATTAA...TTGTGCATTTTTATGTGAAGATCCTTCTCGTATTTCATTTGGAAGGATGAGCGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR GCA 90 bp TCTGTCAGTGTACTTGCTTGTCTTTATAGACCCAAGTCTGTCTGCTGGCAAAAAGAGAAGTCTTGGGATTaGTCATTTGCAGGTTTTGTT +
Preference number: 4 (lower is better)
Translates to: SVSVLACLYRPKSVCWQKEKSWD*SFAGFV
Trigger: AACAAAACCTGCAAATGAGCAATCCCAAGACTTCTC...TTTTTGCCAGCAGACAGACTTGGGTCTATAAAGACAAGCAAGTACACTGACAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR GCA 90 bp TCGCTCATCCTTCCAAATGAAATACGAGAAGGATCTTCACATAAAAATGCACAACCTAGTGCACTTTGTTaGCCGTATAAACTTGCCCCA +
Preference number: 4 (lower is better)
Translates to: SLILPNEIREGSSHKNAQPSALC*PYKLAP
Trigger: TGGGGCAAGTTTATACGGGCAACAAAGTGCACTAGG...TTGTGCATTTTTATGTGAAGATCCTTCTCGTATTTCATTTGGAAGGATGAGCGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR GCA 90 bp GAGTGGTTCATCATATTCCTAGGATTCATAGGCAAAATACCCCTGCTTGGAGATACTTCTTTCAACATTTaGTACTCTGGGGATGGGAAA +
Preference number: 4 (lower is better)
Translates to: EWFIIFLGFIGKIPLLGDTSFNI*YSGDGK
Trigger: TTTCCCATCCCCAGAGTAGCAAATGTTGAAAGAAGT...ATCTCCAAGCAGGGGTATTTTGCCTATGAATCCTAGGAATATGATGAACCACTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000169507.8
ENSMUST00000218490.2
CDS-3UTR GCA 90 bp GAGTGGTTCATCATATTCCTAGGATTCATAGGCAAAATACCCCTGCTTGGAGATGCTGTTTGTCACCTGTaGAACTTCTTTCAACATTTG +
Preference number: 4 (lower is better)
Translates to: EWFIIFLGFIGKIPLLGDAVCHL*NFFQHL
Trigger: CAAATGTTGAAAGAAGTTGCACAGGTGACAAACAGC...ATCTCCAAGCAGGGGTATTTTGCCTATGAATCCTAGGAATATGATGAACCACTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169507.8
ENSMUST00000218490.2
CDS-3UTR CCA 90 bp TCTGTCAGTGTACTTGCTTGTCTTTATAGACCCAAGTCTGTCTGCTGGCAAAAATGTATTGAGAAGTCTTaGGATTGCTCATTTGCAGGT +
Preference number: 4 (lower is better)
Translates to: SVSVLACLYRPKSVCWQKCIEKS*DCSFAG
Trigger: ACCTGCAAATGAGCAATCCCAAGACTTCTCAATACA...TTTTTGCCAGCAGACAGACTTGGGTCTATAAAGACAAGCAAGTACACTGACAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR GCA 90 bp TCTCTAAAATCTCAGGACAAGAACAGAGCATACACACTACAAACAGAAAACCCTTTGAAGCACCAAACATaGTGTTTGTCACCTGGTAGT +
Preference number: 4 (lower is better)
Translates to: SLKSQDKNRAYTLQTENPLKHQT*CLSPGS
Trigger: ACTACCAGGTGACAAACAGCATGTTTGGTGCTTCAA...AGGGTTTTCTGTTTGTAGTGTGTATGCTCTGTTCTTGTCCTGAGATTTTAGAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020374.6
CDS-3UTR CCA 90 bp GAATGTCCCATTTTCATATATTGCATCCATGCACACCTCCTAAAAATGAGGTACTATCTCCAGGGAATTTaGGTCCATCTGTACTTGAAG +
Preference number: 4 (lower is better)
Translates to: ECPIFIYCIHAHLLKMRYYLQGI*VHLYLK
Trigger: CTTCAAGTACAGATGGACCCAAATTCCCTGGAGATA...GTACCTCATTTTTAGGAGGTGTGCATGGATGCAATATATGAAAATGGGACATTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR TCA 90 bp TCGCTCATCCTTCCAAATGAAATACGAGAAGGATCTTCACATAAAAATGCACAACAGGTGAGTTCAGATTaGGGCCTAATGTTGTTAAGT +
Preference number: 4 (lower is better)
Translates to: SLILPNEIREGSSHKNAQQVSSD*GLMLLS
Trigger: ACTTAACAACATTAGGCCTCAATCTGAACTCACCTG...TTGTGCATTTTTATGTGAAGATCCTTCTCGTATTTCATTTGGAAGGATGAGCGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR GCA 90 bp TCTCTAAAATCTCAGGACAAGAACAGAGCATACACACTACAAACAGAAAACCCTTTCAGAAATCTTTGTTaGCCGTATAAACTTGCCCCA +
Preference number: 4 (lower is better)
Translates to: SLKSQDKNRAYTLQTENPFRNLC*PYKLAP
Trigger: TGGGGCAAGTTTATACGGGCAACAAAGATTTCTGAA...AGGGTTTTCTGTTTGTAGTGTGTATGCTCTGTTCTTGTCCTGAGATTTTAGAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000020374.6
CDS-3UTR GCA 90 bp ATGTCCCATTTTCATATATTGCATCCATGCACACCTCCTAAAAATGAGGTACAGGAGAAGTCTTGGGATTaGTCATTTGCAGGTTTTGTT +
Preference number: 4 (lower is better)
Translates to: MSHFHILHPCTPPKNEVQEKSWD*SFAGFV
Trigger: AACAAAACCTGCAAATGAGCAATCCCAAGACTTCTC...CTGTACCTCATTTTTAGGAGGTGTGCATGGATGCAATATATGAAAATGGGACAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR TCA 90 bp TCGCTCATCCTTCCAAATGAAATACGAGAAGGATCTTCACATAAAAATGCACAACTACTTTCCTCCAGTTaGGACAGTCAAAGAAATAGT +
Preference number: 4 (lower is better)
Translates to: SLILPNEIREGSSHKNAQLLSSS*DSQRNS
Trigger: ACTATTTCTTTGACTGTCTCAACTGGAGGAAAGTAG...TTGTGCATTTTTATGTGAAGATCCTTCTCGTATTTCATTTGGAAGGATGAGCGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CCA 90 bp TCGCTCATCCTTCCAAATGAAATACGAGAAGGATCTTCACATAAAAATGCACAATGTATTGAGAAGTCTTaGGATTGCTCATTTGCAGGT +
Preference number: 4 (lower is better)
Translates to: SLILPNEIREGSSHKNAQCIEKS*DCSFAG
Trigger: ACCTGCAAATGAGCAATCCCAAGACTTCTCAATACA...TTGTGCATTTTTATGTGAAGATCCTTCTCGTATTTCATTTGGAAGGATGAGCGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CAA 90 bp GCGCAGCCCTGGAGCCCCAGAGACTGTGGCGATCTCTACAGTCGGATGCCTGCACATACCCGCTCCTCCTaGTGGTATCTCCAATCACGG +
Preference number: 5 (lower is better)
Translates to: AQPWSPRDCGDLYSRMPAHTRSS*WYLQSR
Trigger: CCGTGATTGGAGATACCACAAGGAGGAGCGGGTATG...TGCAGGCATCCGACTGTAGAGATCGCCACAGTCTCTGGGGCTCCAGGGCTGCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CAA 90 bp GCGCAGCCCTGGAGCCCCAGAGACTGTGGCGATCTCTACAGTCGGATGCCTGCAGTCCGTCACCATCCCTaGAGGAATGTTAGTAACTCG +
Preference number: 5 (lower is better)
Translates to: AQPWSPRDCGDLYSRMPAVRHHP*RNVSNS
Trigger: CGAGTTACTAACATTCCTCAAGGGATGGTGACGGAC...TGCAGGCATCCGACTGTAGAGATCGCCACAGTCTCTGGGGCTCCAGGGCTGCGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CAA 90 bp GCGCAGCCCTGGAGCCCCAGAGACTGTGGCGATCTCTACAGTCGGATGCCTGCAGCCAATCATTCCAAATaGGTCCGTCACCATCCCTTG +
Preference number: 5 (lower is better)
Translates to: AQPWSPRDCGDLYSRMPAANHSK*VRHHPL
Trigger: CAAGGGATGGTGACGGACCAATTTGGAATGATTGGC...TGCAGGCATCCGACTGTAGAGATCGCCACAGTCTCTGGGGCTCCAGGGCTGCGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CAA 90 bp GCTCAGTTACAGCGCAGCCCTGGAGCCCCAGAGACTGTGGCGATCTCTACAGTCCATACCCGCTCCTCCTaGTGGTATCTCCAATCACGG +
Preference number: 5 (lower is better)
Translates to: AQLQRSPGAPETVAISTVHTRSS*WYLQSR
Trigger: CCGTGATTGGAGATACCACAAGGAGGAGCGGGTATG...GACTGTAGAGATCGCCACAGTCTCTGGGGCTCCAGGGCTGCGCTGTAACTGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CAA 90 bp GCTCAGTTACAGCGCAGCCCTGGAGCCCCAGAGACTGTGGCGATCTCTACAGTCGTCCGTCACCATCCCTaGAGGAATGTTAGTAACTCG +
Preference number: 5 (lower is better)
Translates to: AQLQRSPGAPETVAISTVVRHHP*RNVSNS
Trigger: CGAGTTACTAACATTCCTCAAGGGATGGTGACGGAC...GACTGTAGAGATCGCCACAGTCTCTGGGGCTCCAGGGCTGCGCTGTAACTGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CAA 90 bp GCGCAGCCCTGGAGCCCCAGAGACTGTGGCGATCTCTACAGTCGGATGCCTGCACGTCATTACTTGACGTaGGATCTTTATAGCTGGAAC +
Preference number: 5 (lower is better)
Translates to: AQPWSPRDCGDLYSRMPARHYLT*DLYSWN
Trigger: GTTCCAGCTATAAAGATCCAACGTCAAGTAATGACG...TGCAGGCATCCGACTGTAGAGATCGCCACAGTCTCTGGGGCTCCAGGGCTGCGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CAA 90 bp GCGCAGCCCTGGAGCCCCAGAGACTGTGGCGATCTCTACAGTCGGATGCCTGCATGCTGTCGTCATTACTaGACGTTGGATCTTTATAGC +
Preference number: 5 (lower is better)
Translates to: AQPWSPRDCGDLYSRMPACCRHY*TLDLYS
Trigger: GCTATAAAGATCCAACGTCAAGTAATGACGACAGCA...TGCAGGCATCCGACTGTAGAGATCGCCACAGTCTCTGGGGCTCCAGGGCTGCGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CAA 90 bp GCGCAGCCCTGGAGCCCCAGAGACTGTGGCGATCTCTACAGTCGGATGCCTGCATTATCTCCAGGGAATTaGGGTCCATCTGTACTTGAA +
Preference number: 5 (lower is better)
Translates to: AQPWSPRDCGDLYSRMPALSPGN*GPSVLE
Trigger: TTCAAGTACAGATGGACCCAAATTCCCTGGAGATAA...TGCAGGCATCCGACTGTAGAGATCGCCACAGTCTCTGGGGCTCCAGGGCTGCGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CAA 90 bp TTGCTCATTCTGGATGAAGCTCAGTTACAGCGCAGCCCTGGAGCCCCAGAGACTGCAAAATACCCCTGCTaGGAGATGGAGGCGTGTGAA +
Preference number: 5 (lower is better)
Translates to: LLILDEAQLQRSPGAPETAKYPC*EMEACE
Trigger: TTCACACGCCTCCATCTCCAAGCAGGGGTATTTTGC...AGTCTCTGGGGCTCCAGGGCTGCGCTGTAACTGAGCTTCATCCAGAATGAGCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CAA 90 bp AGTGTTTTGCTCATTCTGGATGAAGCTCAGTTACAGCGCAGCCCTGGAGCCCCACATACCCGCTCCTCCTaGTGGTATCTCCAATCACGG +
Preference number: 5 (lower is better)
Translates to: SVLLILDEAQLQRSPGAPHTRSS*WYLQSR
Trigger: CCGTGATTGGAGATACCACAAGGAGGAGCGGGTATG...TGGGGCTCCAGGGCTGCGCTGTAACTGAGCTTCATCCAGAATGAGCAAAACACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CAA 90 bp TTGCTCATTCTGGATGAAGCTCAGTTACAGCGCAGCCCTGGAGCCCCAGAGACTCCCCGCTCATACGTGTaGGTTTTCATTGTTGGCTCC +
Preference number: 5 (lower is better)
Translates to: LLILDEAQLQRSPGAPETPRSYV*VFIVGS
Trigger: GGAGCCAACAATGAAAACCAACACGTATGAGCGGGG...AGTCTCTGGGGCTCCAGGGCTGCGCTGTAACTGAGCTTCATCCAGAATGAGCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CAA 90 bp CCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTGCAAAATACCCCTGCTaGGAGATGGAGGCGTGTGAA +
Preference number: 5 (lower is better)
Translates to: PDPQGIKTRVPEPHQLCSAKYPC*EMEACE
Trigger: TTCACACGCCTCCATCTCCAAGCAGGGGTATTTTGC...ACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp CCTTTAGTGCACAGGGCGACAAAGTCCCCTGACCAGCAGTTCCAGAATGTCCCAGCATACATATTATGCTaGGCGAGCTTCTGTTGGGGC +
Preference number: 5 (lower is better)
Translates to: PLVHRATKSPDQQFQNVPAYILC*ASFCWG
Trigger: GCCCCAACAGAAGCTCGCCAAGCATAATATGTATGC...TGGGACATTCTGGAACTGCTGGTCAGGGGACTTTGTCGCCCTGTGCACTAAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CAA 90 bp TGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGGTTTATTAATGGAGTaGGGTTGCCGCTCCCTTCCC +
Preference number: 5 (lower is better)
Translates to: CQILKGLKPGCLSHISSAGLLME*GCRSLP
Trigger: GGGAAGGGAGCGGCAACCCAACTCCATTAATAAACC...TGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp CCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTGGGTCCATCTGTACTaGAAGTCGTCTTCCCCGATG +
Preference number: 5 (lower is better)
Translates to: PDPQGIKTRVPEPHQLCSWVHLY*KSSSPM
Trigger: CATCGGGGAAGACGACTTCAAGTACAGATGGACCCA...ACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp TTGCTCATTCTGGATGAAGCTCAGTTACAGCGCAGCCCTGGAGCCCCAGAGACTGTCCGTCACCATCCCTaGAGGAATGTTAGTAACTCG +
Preference number: 5 (lower is better)
Translates to: LLILDEAQLQRSPGAPETVRHHP*RNVSNS
Trigger: CGAGTTACTAACATTCCTCAAGGGATGGTGACGGAC...AGTCTCTGGGGCTCCAGGGCTGCGCTGTAACTGAGCTTCATCCAGAATGAGCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CAA 90 bp CCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTGTTGGTTTTCATTGTaGGCTCCATGCCTGGTGCCC +
Preference number: 5 (lower is better)
Translates to: PDPQGIKTRVPEPHQLCSCWFSL*APCLVP
Trigger: GGGCACCAGGCATGGAGCCAACAATGAAAACCAACA...ACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp CCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTCCCCGCTCATACGTGTaGGTTTTCATTGTTGGCTCC +
Preference number: 5 (lower is better)
Translates to: PDPQGIKTRVPEPHQLCSPRSYV*VFIVGS
Trigger: GGAGCCAACAATGAAAACCAACACGTATGAGCGGGG...ACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp AGTGTTTTGCTCATTCTGGATGAAGCTCAGTTACAGCGCAGCCCTGGAGCCCCATGTGAAGTGACATTGTaGGTACCCCTGTTGTTGGCG +
Preference number: 5 (lower is better)
Translates to: SVLLILDEAQLQRSPGAPCEVTL*VPLLLA
Trigger: CGCCAACAACAGGGGTACCAACAATGTCACTTCACA...TGGGGCTCCAGGGCTGCGCTGTAACTGAGCTTCATCCAGAATGAGCAAAACACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CAA 90 bp AGTGTTTTGCTCATTCTGGATGAAGCTCAGTTACAGCGCAGCCCTGGAGCCCCAGCGTGTGAAGTGACATaGTTGGTACCCCTGTTGTTG +
Preference number: 5 (lower is better)
Translates to: SVLLILDEAQLQRSPGAPACEVT*LVPLLL
Trigger: CAACAACAGGGGTACCAACAATGTCACTTCACACGC...TGGGGCTCCAGGGCTGCGCTGTAACTGAGCTTCATCCAGAATGAGCAAAACACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CAA 90 bp GGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGTCGAGTATCTTGGCGAGCTTCTGTaGGGGCTACCTAACCCTGAA +
Preference number: 5 (lower is better)
Translates to: GIKTRVPEPHQLCSYVEYLGELL*GLPNPE
Trigger: TTCAGGGTTAGGTAGCCCCAACAGAAGCTCGCCAAG...ATACTCGACATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp GTAAGCCAATTGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCTTGGCGAGCTTCTGTaGGGGCTACCTAACCCTGAA +
Preference number: 5 (lower is better)
Translates to: VSQLPDPQGIKTRVPEPHLGELL*GLPNPE
Trigger: TTCAGGGTTAGGTAGCCCCAACAGAAGCTCGCCAAG...ATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCAATTGGCTTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp AGTGTTTTGCTCATTCTGGATGAAGCTCAGTTACAGCGCAGCCCTGGAGCCCCAGCATACATATTATGCTaGGCGAGCTTCTGTTGGGGC +
Preference number: 5 (lower is better)
Translates to: SVLLILDEAQLQRSPGAPAYILC*ASFCWG
Trigger: GCCCCAACAGAAGCTCGCCAAGCATAATATGTATGC...TGGGGCTCCAGGGCTGCGCTGTAACTGAGCTTCATCCAGAATGAGCAAAACACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CAA 90 bp CCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTATTAATGGAGTTGGGTaGCCGCTCCCTTCCCTTCTA +
Preference number: 5 (lower is better)
Translates to: PDPQGIKTRVPEPHQLCSINGVG*PLPSLL
Trigger: TAGAAGGGAAGGGAGCGGCAACCCAACTCCATTAAT...ACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp TGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAATTAATGGAGTTGGGTaGCCGCTCCCTTCCCTTCTA +
Preference number: 5 (lower is better)
Translates to: CQILKGLKPGCLSHISSAINGVG*PLPSLL
Trigger: TAGAAGGGAAGGGAGCGGCAACCCAACTCCATTAAT...TGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp CAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGTCGAGGGTTTATTAATGGAGTaGGGTTGCCGCTCCCTTCCC +
Preference number: 5 (lower is better)
Translates to: QGIKTRVPEPHQLCSYVEGLLME*GCRSLP
Trigger: GGGAAGGGAGCGGCAACCCAACTCCATTAATAAACC...CTCGACATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp CAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGTCGAGTGGGTCCATCTGTACTaGAAGTCGTCTTCCCCGATG +
Preference number: 5 (lower is better)
Translates to: QGIKTRVPEPHQLCSYVEWVHLY*KSSSPM
Trigger: CATCGGGGAAGACGACTTCAAGTACAGATGGACCCA...CTCGACATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp TGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGCCAATCATTCCAAATaGGTCCGTCACCATCCCTTG +
Preference number: 5 (lower is better)
Translates to: CQILKGLKPGCLSHISSAANHSK*VRHHPL
Trigger: CAAGGGATGGTGACGGACCAATTTGGAATGATTGGC...TGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp TGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCACCATATCGGCCAAGTTaGATTGCAGCCAGCTTATCC +
Preference number: 5 (lower is better)
Translates to: CQILKGLKPGCLSHISSAPYRPS*IAASLS
Trigger: GGATAAGCTGGCTGCAATCAAACTTGGCCGATATGG...TGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp AGTGTTTTGCTCATTCTGGATGAAGCTCAGTTACAGCGCAGCCCTGGAGCCCCACCATATCGGCCAAGTTaGATTGCAGCCAGCTTATCC +
Preference number: 5 (lower is better)
Translates to: SVLLILDEAQLQRSPGAPPYRPS*IAASLS
Trigger: GGATAAGCTGGCTGCAATCAAACTTGGCCGATATGG...TGGGGCTCCAGGGCTGCGCTGTAACTGAGCTTCATCCAGAATGAGCAAAACACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CAA 90 bp ATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGCATACCCGCTCCTCCTaGTGGTATCTCCAATCACGG +
Preference number: 5 (lower is better)
Translates to: ILKGLKPGCLSHISSAVMHTRSS*WYLQSR
Trigger: CCGTGATTGGAGATACCACAAGGAGGAGCGGGTATG...CATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp CAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGTCGAGTGTTGGTTTTCATTGTaGGCTCCATGCCTGGTGCCC +
Preference number: 5 (lower is better)
Translates to: QGIKTRVPEPHQLCSYVECWFSL*APCLVP
Trigger: GGGCACCAGGCATGGAGCCAACAATGAAAACCAACA...CTCGACATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp CAATTGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGTTGGTTTTCATTGTaGGCTCCATGCCTGGTGCCC +
Preference number: 5 (lower is better)
Translates to: QLPDPQGIKTRVPEPHQLCWFSL*APCLVP
Trigger: GGGCACCAGGCATGGAGCCAACAATGAAAACCAACA...GAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCAATTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp CCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTACGTGTTGGTTTTCATaGTTGGCTCCATGCCTGGTG +
Preference number: 5 (lower is better)
Translates to: PDPQGIKTRVPEPHQLCSTCWFS*LAPCLV
Trigger: CACCAGGCATGGAGCCAACAATGAAAACCAACACGT...ACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp GGCCCTTTAGTGCACAGGGCGACAAAGTCCCCTGACCAGCAGTTCCAGAATGTCCACCAAACATGCTGTTaGTCACCTGGTAGTTTCTTT +
Preference number: 5 (lower is better)
Translates to: GPLVHRATKSPDQQFQNVHQTCC*SPGSFF
Trigger: AAAGAAACTACCAGGTGACAAACAGCATGTTTGGTG...GACATTCTGGAACTGCTGGTCAGGGGACTTTGTCGCCCTGTGCACTAAAGGGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105267.8
CDS-3UTR CAA 90 bp CCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTGTTGCCCGTATAAACTaGCCCCAAATTGAGACAGCT +
Preference number: 5 (lower is better)
Translates to: PDPQGIKTRVPEPHQLCSVARIN*PQIETA
Trigger: AGCTGTCTCAATTTGGGGCAAGTTTATACGGGCAAC...ACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp CAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGTCGAGTGTGAAGTGACATTGTaGGTACCCCTGTTGTTGGCG +
Preference number: 5 (lower is better)
Translates to: QGIKTRVPEPHQLCSYVECEVTL*VPLLLA
Trigger: CGCCAACAACAGGGGTACCAACAATGTCACTTCACA...CTCGACATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp GATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGCAAAATACCCCTGCTaGGAGATGGAGGCGTGTGAA +
Preference number: 5 (lower is better)
Translates to: DPQGIKTRVPEPHQLCSYAKYPC*EMEACE
Trigger: TTCACACGCCTCCATCTCCAAGCAGGGGTATTTTGC...ATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp GGCCCTTTAGTGCACAGGGCGACAAAGTCCCCTGACCAGCAGTTCCAGAATGTCCTGTCGAGAAGGCTGTaGCTTTGGCATACATATTAT +
Preference number: 5 (lower is better)
Translates to: GPLVHRATKSPDQQFQNVLSRRL*LWHTYY
Trigger: ATAATATGTATGCCAAAGCAACAGCCTTCTCGACAG...GACATTCTGGAACTGCTGGTCAGGGGACTTTGTCGCCCTGTGCACTAAAGGGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CAA 90 bp GTAAGCCAATTGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATGGTTTATTAATGGAGTaGGGTTGCCGCTCCCTTCCC +
Preference number: 5 (lower is better)
Translates to: VSQLPDPQGIKTRVPEPHGLLME*GCRSLP
Trigger: GGGAAGGGAGCGGCAACCCAACTCCATTAATAAACC...ATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCAATTGGCTTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp GTAAGCCAATTGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATTGGGTCCATCTGTACTaGAAGTCGTCTTCCCCGATG +
Preference number: 5 (lower is better)
Translates to: VSQLPDPQGIKTRVPEPHWVHLY*KSSSPM
Trigger: CATCGGGGAAGACGACTTCAAGTACAGATGGACCCA...ATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCAATTGGCTTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp CAATTGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCGCCAATCATTCCAAATaGGTCCGTCACCATCCCTTG +
Preference number: 5 (lower is better)
Translates to: QLPDPQGIKTRVPEPHQLANHSK*VRHHPL
Trigger: CAAGGGATGGTGACGGACCAATTTGGAATGATTGGC...GAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCAATTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp ATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGTGTTGGTTTTCATTGTaGGCTCCATGCCTGGTGCCC +
Preference number: 5 (lower is better)
Translates to: ILKGLKPGCLSHISSAVMCWFSL*APCLVP
Trigger: GGGCACCAGGCATGGAGCCAACAATGAAAACCAACA...CATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp AAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGTCGAGTATTGTGCTTGTTGGTTTTCATTGTaGGCTCCATGCCTGGTGCCC +
Preference number: 5 (lower is better)
Translates to: KTRVPEPHQLCSYVEYCACWFSL*APCLVP
Trigger: GGGCACCAGGCATGGAGCCAACAATGAAAACCAACA...AGCACAATACTCGACATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp CAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGTCGAGACGTGTTGGTTTTCATaGTTGGCTCCATGCCTGGTG +
Preference number: 5 (lower is better)
Translates to: QGIKTRVPEPHQLCSYVETCWFS*LAPCLV
Trigger: CACCAGGCATGGAGCCAACAATGAAAACCAACACGT...CTCGACATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp CTGAGCCACATCAGCTCTGCAGTTATGTCGAGTATTGTGCTGAGACAGCCATACCCCCGCTCATACGTGTaGGTTTTCATTGTTGGCTCC +
Preference number: 5 (lower is better)
Translates to: LSHISSAVMSSIVLRQPYPRSYV*VFIVGS
Trigger: GGAGCCAACAATGAAAACCAACACGTATGAGCGGGG...GTATGGCTGTCTCAGCACAATACTCGACATAACTGCAGAGCTGATGTGGCTCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp CAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGTCGAGGTTGCCCGTATAAACTaGCCCCAAATTGAGACAGCT +
Preference number: 5 (lower is better)
Translates to: QGIKTRVPEPHQLCSYVEVARIN*PQIETA
Trigger: AGCTGTCTCAATTTGGGGCAAGTTTATACGGGCAAC...CTCGACATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp GATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATTGTGAAGTGACATTGTaGGTACCCCTGTTGTTGGCG +
Preference number: 5 (lower is better)
Translates to: DPQGIKTRVPEPHQLCSYCEVTL*VPLLLA
Trigger: CGCCAACAACAGGGGTACCAACAATGTCACTTCACA...ATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp GTAAGCCAATTGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATGCGTGTGAAGTGACATaGTTGGTACCCCTGTTGTTG +
Preference number: 5 (lower is better)
Translates to: VSQLPDPQGIKTRVPEPHACEVT*LVPLLL
Trigger: CAACAACAGGGGTACCAACAATGTCACTTCACACGC...ATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCAATTGGCTTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp CATCAGCTCTGCAGTTATGTCGAGTATTGTGCTGAGACAGCCATACCCCAAGAAGCAAAATACCCCTGCTaGGAGATGGAGGCGTGTGAA +
Preference number: 5 (lower is better)
Translates to: HQLCSYVEYCAETAIPQEAKYPC*EMEACE
Trigger: TTCACACGCCTCCATCTCCAAGCAGGGGTATTTTGC...TTCTTGGGGTATGGCTGTCTCAGCACAATACTCGACATAACTGCAGAGCTGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp GTAAGCCAATTGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATGCATACATATTATGCTaGGCGAGCTTCTGTTGGGGC +
Preference number: 5 (lower is better)
Translates to: VSQLPDPQGIKTRVPEPHAYILC*ASFCWG
Trigger: GCCCCAACAGAAGCTCGCCAAGCATAATATGTATGC...ATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCAATTGGCTTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp GGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGTCGAGTATGCATACATATTATGCTaGGCGAGCTTCTGTTGGGGC +
Preference number: 5 (lower is better)
Translates to: GIKTRVPEPHQLCSYVEYAYILC*ASFCWG
Trigger: GCCCCAACAGAAGCTCGCCAAGCATAATATGTATGC...ATACTCGACATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp GATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATATTAATGGAGTTGGGTaGCCGCTCCCTTCCCTTCTA +
Preference number: 5 (lower is better)
Translates to: DPQGIKTRVPEPHQLCSYINGVG*PLPSLL
Trigger: TAGAAGGGAAGGGAGCGGCAACCCAACTCCATTAAT...ATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp CTGAGCCACATCAGCTCTGCAGTTATGTCGAGTATTGTGCTGAGACAGCCATACATTAATGGAGTTGGGTaGCCGCTCCCTTCCCTTCTA +
Preference number: 5 (lower is better)
Translates to: LSHISSAVMSSIVLRQPYINGVG*PLPSLL
Trigger: TAGAAGGGAAGGGAGCGGCAACCCAACTCCATTAAT...GTATGGCTGTCTCAGCACAATACTCGACATAACTGCAGAGCTGATGTGGCTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp CCTTTAGTGCACAGGGCGACAAAGTCCCCTGACCAGCAGTTCCAGAATGTCCCACGTCATTACTTGACGTaGGATCTTTATAGCTGGAAC +
Preference number: 5 (lower is better)
Translates to: PLVHRATKSPDQQFQNVPRHYLT*DLYSWN
Trigger: GTTCCAGCTATAAAGATCCAACGTCAAGTAATGACG...TGGGACATTCTGGAACTGCTGGTCAGGGGACTTTGTCGCCCTGTGCACTAAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CAA 90 bp CCTTTAGTGCACAGGGCGACAAAGTCCCCTGACCAGCAGTTCCAGAATGTCCCATGCTGTCGTCATTACTaGACGTTGGATCTTTATAGC +
Preference number: 5 (lower is better)
Translates to: PLVHRATKSPDQQFQNVPCCRHY*TLDLYS
Trigger: GCTATAAAGATCCAACGTCAAGTAATGACGACAGCA...TGGGACATTCTGGAACTGCTGGTCAGGGGACTTTGTCGCCCTGTGCACTAAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CAA 90 bp CATCAGCTCTGCAGTTATGTCGAGTATTGTGCTGAGACAGCCATACCCCAAGAATGGGTCCATCTGTACTaGAAGTCGTCTTCCCCGATG +
Preference number: 5 (lower is better)
Translates to: HQLCSYVEYCAETAIPQEWVHLY*KSSSPM
Trigger: CATCGGGGAAGACGACTTCAAGTACAGATGGACCCA...TTCTTGGGGTATGGCTGTCTCAGCACAATACTCGACATAACTGCAGAGCTGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp CCTTTAGTGCACAGGGCGACAAAGTCCCCTGACCAGCAGTTCCAGAATGTCCCATTATCTCCAGGGAATTaGGGTCCATCTGTACTTGAA +
Preference number: 5 (lower is better)
Translates to: PLVHRATKSPDQQFQNVPLSPGN*GPSVLE
Trigger: TTCAAGTACAGATGGACCCAAATTCCCTGGAGATAA...TGGGACATTCTGGAACTGCTGGTCAGGGGACTTTGTCGCCCTGTGCACTAAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CAA 90 bp GGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGTCGAGTATGTCCGTCACCATCCCTaGAGGAATGTTAGTAACTCG +
Preference number: 5 (lower is better)
Translates to: GIKTRVPEPHQLCSYVEYVRHHP*RNVSNS
Trigger: CGAGTTACTAACATTCCTCAAGGGATGGTGACGGAC...ATACTCGACATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp CTGAGCCACATCAGCTCTGCAGTTATGTCGAGTATTGTGCTGAGACAGCCATACCCATATCGGCCAAGTTaGATTGCAGCCAGCTTATCC +
Preference number: 5 (lower is better)
Translates to: LSHISSAVMSSIVLRQPYPYRPS*IAASLS
Trigger: GGATAAGCTGGCTGCAATCAAACTTGGCCGATATGG...GTATGGCTGTCTCAGCACAATACTCGACATAACTGCAGAGCTGATGTGGCTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp GTAAGCCAATTGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCCATATCGGCCAAGTTaGATTGCAGCCAGCTTATCC +
Preference number: 5 (lower is better)
Translates to: VSQLPDPQGIKTRVPEPHPYRPS*IAASLS
Trigger: GGATAAGCTGGCTGCAATCAAACTTGGCCGATATGG...ATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCAATTGGCTTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp GGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGTCGAGTATACGTGTTGGTTTTCATaGTTGGCTCCATGCCTGGTG +
Preference number: 5 (lower is better)
Translates to: GIKTRVPEPHQLCSYVEYTCWFS*LAPCLV
Trigger: CACCAGGCATGGAGCCAACAATGAAAACCAACACGT...ATACTCGACATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp GTAAGCCAATTGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATACGTGTTGGTTTTCATaGTTGGCTCCATGCCTGGTG +
Preference number: 5 (lower is better)
Translates to: VSQLPDPQGIKTRVPEPHTCWFS*LAPCLV
Trigger: CACCAGGCATGGAGCCAACAATGAAAACCAACACGT...ATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCAATTGGCTTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp CATCAGCTCTGCAGTTATGTCGAGTATTGTGCTGAGACAGCCATACCCCAAGAACCCCGCTCATACGTGTaGGTTTTCATTGTTGGCTCC +
Preference number: 5 (lower is better)
Translates to: HQLCSYVEYCAETAIPQEPRSYV*VFIVGS
Trigger: GGAGCCAACAATGAAAACCAACACGTATGAGCGGGG...TTCTTGGGGTATGGCTGTCTCAGCACAATACTCGACATAACTGCAGAGCTGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp GAACGACAAAAGGTAAGAGGACAAGTCCGTGTTTGTGAGTGTCTGGGGGACACAGTTGCCCGTATAAACTaGCCCCAAATTGAGACAGCT +
Preference number: 5 (lower is better)
Translates to: ERQKVRGQVRVCECLGDTVARIN*PQIETA
Trigger: AGCTGTCTCAATTTGGGGCAAGTTTATACGGGCAAC...TGTGTCCCCCAGACACTCACAAACACGGACTTGTCCTCTTACCTTTTGTCGTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000020374.6
CDS-3UTR CAA 90 bp CTGAGCCACATCAGCTCTGCAGTTATGTCGAGTATTGTGCTGAGACAGCCATACGTTGCCCGTATAAACTaGCCCCAAATTGAGACAGCT +
Preference number: 5 (lower is better)
Translates to: LSHISSAVMSSIVLRQPYVARIN*PQIETA
Trigger: AGCTGTCTCAATTTGGGGCAAGTTTATACGGGCAAC...GTATGGCTGTCTCAGCACAATACTCGACATAACTGCAGAGCTGATGTGGCTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp CATCAGCTCTGCAGTTATGTCGAGTATTGTGCTGAGACAGCCATACCCCAAGAAGCGTGTGAAGTGACATaGTTGGTACCCCTGTTGTTG +
Preference number: 5 (lower is better)
Translates to: HQLCSYVEYCAETAIPQEACEVT*LVPLLL
Trigger: CAACAACAGGGGTACCAACAATGTCACTTCACACGC...TTCTTGGGGTATGGCTGTCTCAGCACAATACTCGACATAACTGCAGAGCTGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp AGTTATGTCGAGTATTGTGCTGAGACAGCCATACCCCAAGAAAAGGGAAGTCTTCTTGGCGAGCTTCTGTaGGGGCTACCTAACCCTGAA +
Preference number: 5 (lower is better)
Translates to: SYVEYCAETAIPQEKGSLLGELL*GLPNPE
Trigger: TTCAGGGTTAGGTAGCCCCAACAGAAGCTCGCCAAG...AAGACTTCCCTTTTCTTGGGGTATGGCTGTCTCAGCACAATACTCGACATAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp AAGGCAGGACCTCAAATGGTGACCCTTTCTTTACGTAAGCCAATTGCCAGATCCGCATACATATTATGCTaGGCGAGCTTCTGTTGGGGC +
Preference number: 5 (lower is better)
Translates to: KAGPQMVTLSLRKPIARSAYILC*ASFCWG
Trigger: GCCCCAACAGAAGCTCGCCAAGCATAATATGTATGC...GGATCTGGCAATTGGCTTACGTAAAGAAAGGGTCACCATTTGAGGTCCTGCCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp TGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGCTCATTTGCAGGTTTaGTTACCATTCCAACGTAAG +
Preference number: 5 (lower is better)
Translates to: CQILKGLKPGCLSHISSAAHLQV*LPFQRK
Trigger: CTTACGTTGGAATGGTAACAAAACCTGCAAATGAGC...TGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp CAATTGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCCACCAAACATGCTGTTaGTCACCTGGTAGTTTCTTT +
Preference number: 5 (lower is better)
Translates to: QLPDPQGIKTRVPEPHQLHQTCC*SPGSFF
Trigger: AAAGAAACTACCAGGTGACAAACAGCATGTTTGGTG...GAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCAATTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105267.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp CATCAGCTCTGCAGTTATGTCGAGTATTGTGCTGAGACAGCCATACCCCAAGAAGTTGCCCGTATAAACTaGCCCCAAATTGAGACAGCT +
Preference number: 5 (lower is better)
Translates to: HQLCSYVEYCAETAIPQEVARIN*PQIETA
Trigger: AGCTGTCTCAATTTGGGGCAAGTTTATACGGGCAAC...TTCTTGGGGTATGGCTGTCTCAGCACAATACTCGACATAACTGCAGAGCTGATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp TCTGTCAGTGTACTTGCTTGTCTTTATAGACCCAAGTCTGTCTGCTGGCAAAAACTTGGCGAGCTTCTGTaGGGGCTACCTAACCCTGAA +
Preference number: 5 (lower is better)
Translates to: SVSVLACLYRPKSVCWQKLGELL*GLPNPE
Trigger: TTCAGGGTTAGGTAGCCCCAACAGAAGCTCGCCAAG...TTTTTGCCAGCAGACAGACTTGGGTCTATAAAGACAAGCAAGTACACTGACAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp CAATTGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCGAGAAGGCTGTTGCTTaGGCATACATATTATGCTTG +
Preference number: 5 (lower is better)
Translates to: QLPDPQGIKTRVPEPHQLEKAVA*AYILCL
Trigger: CAAGCATAATATGTATGCCAAAGCAACAGCCTTCTC...GAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCAATTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp TGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAAATCTTCGTTGTGTATaGAGAAGTCTTGGGATTGCT +
Preference number: 5 (lower is better)
Translates to: CQILKGLKPGCLSHISSANLRCV*RSLGIA
Trigger: AGCAATCCCAAGACTTCTCAATACACAACGAAGATT...TGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp CAATTGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCCGTCATTACTTGACGTaGGATCTTTATAGCTGGAAC +
Preference number: 5 (lower is better)
Translates to: QLPDPQGIKTRVPEPHQLRHYLT*DLYSWN
Trigger: GTTCCAGCTATAAAGATCCAACGTCAAGTAATGACG...GAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCAATTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp TCTGTCAGTGTACTTGCTTGTCTTTATAGACCCAAGTCTGTCTGCTGGCAAAAACATACCCGCTCCTCCTaGTGGTATCTCCAATCACGG +
Preference number: 5 (lower is better)
Translates to: SVSVLACLYRPKSVCWQKHTRSS*WYLQSR
Trigger: CCGTGATTGGAGATACCACAAGGAGGAGCGGGTATG...TTTTTGCCAGCAGACAGACTTGGGTCTATAAAGACAAGCAAGTACACTGACAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp AGTTATGTCGAGTATTGTGCTGAGACAGCCATACCCCAAGAAAAGGGAAGTCTTCCCCGCTCATACGTGTaGGTTTTCATTGTTGGCTCC +
Preference number: 5 (lower is better)
Translates to: SYVEYCAETAIPQEKGSLPRSYV*VFIVGS
Trigger: GGAGCCAACAATGAAAACCAACACGTATGAGCGGGG...AAGACTTCCCTTTTCTTGGGGTATGGCTGTCTCAGCACAATACTCGACATAACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp AAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGTCGAGTATTGTGCTGGCCGCTCTTCTAATTaGTCATATTCCAGATGGAAC +
Preference number: 5 (lower is better)
Translates to: KTRVPEPHQLCSYVEYCAGRSSN*SYSRWN
Trigger: GTTCCATCTGGAATATGACAAATTAGAAGAGCGGCC...AGCACAATACTCGACATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp CTGAGCCACATCAGCTCTGCAGTTATGTCGAGTATTGTGCTGAGACAGCCATACGGCCGCTCTTCTAATTaGTCATATTCCAGATGGAAC +
Preference number: 5 (lower is better)
Translates to: LSHISSAVMSSIVLRQPYGRSSN*SYSRWN
Trigger: GTTCCATCTGGAATATGACAAATTAGAAGAGCGGCC...GTATGGCTGTCTCAGCACAATACTCGACATAACTGCAGAGCTGATGTGGCTCAG
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp GGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGTCGAGTATGGCCGCTCTTCTAATTaGTCATATTCCAGATGGAAC +
Preference number: 5 (lower is better)
Translates to: GIKTRVPEPHQLCSYVEYGRSSN*SYSRWN
Trigger: GTTCCATCTGGAATATGACAAATTAGAAGAGCGGCC...ATACTCGACATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp CTGACCAGCAGTTCCAGAATGTCCCATTTTCATATATTGCATCCATGCACACCTGCGTGTGAAGTGACATaGTTGGTACCCCTGTTGTTG +
Preference number: 5 (lower is better)
Translates to: LTSSSRMSHFHILHPCTPACEVT*LVPLLL
Trigger: CAACAACAGGGGTACCAACAATGTCACTTCACACGC...AGGTGTGCATGGATGCAATATATGAAAATGGGACATTCTGGAACTGCTGGTCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CAA 90 bp ATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGGAGAAGGCTGTTGCTTaGGCATACATATTATGCTTG +
Preference number: 5 (lower is better)
Translates to: ILKGLKPGCLSHISSAVMEKAVA*AYILCL
Trigger: CAAGCATAATATGTATGCCAAAGCAACAGCCTTCTC...CATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp GGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGTCGAGTATGAGAAGGCTGTTGCTTaGGCATACATATTATGCTTG +
Preference number: 5 (lower is better)
Translates to: GIKTRVPEPHQLCSYVEYEKAVA*AYILCL
Trigger: CAAGCATAATATGTATGCCAAAGCAACAGCCTTCTC...ATACTCGACATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp CTGAGCCACATCAGCTCTGCAGTTATGTCGAGTATTGTGCTGAGACAGCCATACGAGAAGGCTGTTGCTTaGGCATACATATTATGCTTG +
Preference number: 5 (lower is better)
Translates to: LSHISSAVMSSIVLRQPYEKAVA*AYILCL
Trigger: CAAGCATAATATGTATGCCAAAGCAACAGCCTTCTC...GTATGGCTGTCTCAGCACAATACTCGACATAACTGCAGAGCTGATGTGGCTCAG
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp CTGAGCCACATCAGCTCTGCAGTTATGTCGAGTATTGTGCTGAGACAGCCATACCTGTCGAGAAGGCTGTaGCTTTGGCATACATATTAT +
Preference number: 5 (lower is better)
Translates to: LSHISSAVMSSIVLRQPYLSRRL*LWHTYY
Trigger: ATAATATGTATGCCAAAGCAACAGCCTTCTCGACAG...GTATGGCTGTCTCAGCACAATACTCGACATAACTGCAGAGCTGATGTGGCTCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp GTAAGCCAATTGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCTGTCGAGAAGGCTGTaGCTTTGGCATACATATTAT +
Preference number: 5 (lower is better)
Translates to: VSQLPDPQGIKTRVPEPHLSRRL*LWHTYY
Trigger: ATAATATGTATGCCAAAGCAACAGCCTTCTCGACAG...ATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCAATTGGCTTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp GATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGCTCATTTGCAGGTTTaGTTACCATTCCAACGTAAG +
Preference number: 5 (lower is better)
Translates to: DPQGIKTRVPEPHQLCSYAHLQV*LPFQRK
Trigger: CTTACGTTGGAATGGTAACAAAACCTGCAAATGAGC...ATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp AAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGTCGAGTATTGTGCTGCTCATTTGCAGGTTTaGTTACCATTCCAACGTAAG +
Preference number: 5 (lower is better)
Translates to: KTRVPEPHQLCSYVEYCAAHLQV*LPFQRK
Trigger: CTTACGTTGGAATGGTAACAAAACCTGCAAATGAGC...AGCACAATACTCGACATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp GTAAGCCAATTGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATGCTCATTTGCAGGTTTaGTTACCATTCCAACGTAAG +
Preference number: 5 (lower is better)
Translates to: VSQLPDPQGIKTRVPEPHAHLQV*LPFQRK
Trigger: CTTACGTTGGAATGGTAACAAAACCTGCAAATGAGC...ATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCAATTGGCTTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp ATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGCTTGGGATTGCTCATTaGCAGGTTTTGTTACCATTC +
Preference number: 5 (lower is better)
Translates to: ILKGLKPGCLSHISSAVMLGIAH*QVLLPF
Trigger: GAATGGTAACAAAACCTGCAAATGAGCAATCCCAAG...CATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp AAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGTCGAGTATTGTGCTCTTGGGATTGCTCATTaGCAGGTTTTGTTACCATTC +
Preference number: 5 (lower is better)
Translates to: KTRVPEPHQLCSYVEYCALGIAH*QVLLPF
Trigger: GAATGGTAACAAAACCTGCAAATGAGCAATCCCAAG...AGCACAATACTCGACATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp GTAAGCCAATTGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCTTGGGATTGCTCATTaGCAGGTTTTGTTACCATTC +
Preference number: 5 (lower is better)
Translates to: VSQLPDPQGIKTRVPEPHLGIAH*QVLLPF
Trigger: GAATGGTAACAAAACCTGCAAATGAGCAATCCCAAG...ATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCAATTGGCTTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp CAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATGTCGAGAATCTTCGTTGTGTATaGAGAAGTCTTGGGATTGCT +
Preference number: 5 (lower is better)
Translates to: QGIKTRVPEPHQLCSYVENLRCV*RSLGIA
Trigger: AGCAATCCCAAGACTTCTCAATACACAACGAAGATT...CTCGACATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp CAATTGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCAATCTTCGTTGTGTATaGAGAAGTCTTGGGATTGCT +
Preference number: 5 (lower is better)
Translates to: QLPDPQGIKTRVPEPHQLNLRCV*RSLGIA
Trigger: AGCAATCCCAAGACTTCTCAATACACAACGAAGATT...GAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCAATTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp GTAAGCCAATTGCCAGATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATTGCTGTCGTCATTACTaGACGTTGGATCTTTATAGC +
Preference number: 5 (lower is better)
Translates to: VSQLPDPQGIKTRVPEPHCCRHY*TLDLYS
Trigger: GCTATAAAGATCCAACGTCAAGTAATGACGACAGCA...ATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATCTGGCAATTGGCTTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp TCTGTCAGTGTACTTGCTTGTCTTTATAGACCCAAGTCTGTCTGCTGGCAAAAATGGGTCCATCTGTACTaGAAGTCGTCTTCCCCGATG +
Preference number: 5 (lower is better)
Translates to: SVSVLACLYRPKSVCWQKWVHLY*KSSSPM
Trigger: CATCGGGGAAGACGACTTCAAGTACAGATGGACCCA...TTTTTGCCAGCAGACAGACTTGGGTCTATAAAGACAAGCAAGTACACTGACAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp GATCCTCAAGGGATTAAAACCAGGGTGCCTGAGCCACATCAGCTCTGCAGTTATTTATCTCCAGGGAATTaGGGTCCATCTGTACTTGAA +
Preference number: 5 (lower is better)
Translates to: DPQGIKTRVPEPHQLCSYLSPGN*GPSVLE
Trigger: TTCAAGTACAGATGGACCCAAATTCCCTGGAGATAA...ATAACTGCAGAGCTGATGTGGCTCAGGCACCCTGGTTTTAATCCCTTGAGGATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp AAGGCAGGACCTCAAATGGTGACCCTTTCTTTACGTAAGCCAATTGCCAGATCCGGCCGCTCTTCTAATTaGTCATATTCCAGATGGAAC +
Preference number: 5 (lower is better)
Translates to: KAGPQMVTLSLRKPIARSGRSSN*SYSRWN
Trigger: GTTCCATCTGGAATATGACAAATTAGAAGAGCGGCC...GGATCTGGCAATTGGCTTACGTAAAGAAAGGGTCACCATTTGAGGTCCTGCCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp ATGCTTGGCGAGCTTCTGTTGGGGCTACCTAACCCTGAACTGCTCATGCTATTTAACTTCTTTCAACATTaGCTACTCTGGGGATGGGAA +
Preference number: 5 (lower is better)
Translates to: MLGELLLGLPNPELLMLFNFFQH*LLWGWE
Trigger: TTCCCATCCCCAGAGTAGCAAATGTTGAAAGAAGTT...AAATAGCATGAGCAGTTCAGGGTTAGGTAGCCCCAACAGAAGCTCGCCAAGCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169507.8
ENSMUST00000218490.2
CDS TCA 90 bp CTCATCATGGTAGTCGCTGTCCACCCCCTCTACAAACTTCTTTCTTaGAGCACCAAACATGCTGTTTGTCACCTGGTAGTTTCTTTTCTC +
Preference number: 5 (lower is better)
Translates to: LIMVVAVHPLYKLLS*STKHAVCHLVVSFL
Trigger: GAGAAAAGAAACTACCAGGTGACAAACAGCATGTTTGGTGCTTCAAGAAAGAAGTTTGTAGAGGGGGTGGACAGCGACTACCATGATGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000020374.6
ENSMUST00000105267.8
ENSMUST00000167706.8
ENSMUST00000169921.8
ENSMUST00000218744.2
CDS CCA 90 bp GTTTGTCACCTGTGCAACTTCTTTCAACATTTGCTACTCTGGGGATaGGAAAGCTCAGAGCTGGAGGCTGGTAGTTTCTTTTCTCAGATA +
Preference number: 5 (lower is better)
Translates to: VCHLCNFFQHLLLWG*ESSELEAGSFFSQI
Trigger: TATCTGAGAAAAGAAACTACCAGCCTCCAGCTCTGAGCTTTCCCATCCCCAGAGTAGCAAATGTTGAAAGAAGTTGCACAGGTGACAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169507.8
ENSMUST00000218490.2
CDS-3UTR CAA 90 bp CAAAAGGTAAGAGGACAAGTCCGTGTTTGTGAGTGTCTGGGGGACACAATGACACACCAAACATGCTGTTaGTCACCTGGTAGTTTCTTT +
Preference number: 5 (lower is better)
Translates to: QKVRGQVRVCECLGDTMTHQTCC*SPGSFF
Trigger: AAAGAAACTACCAGGTGACAAACAGCATGTTTGGTG...TGTCATTGTGTCCCCCAGACACTCACAAACACGGACTTGTCCTCTTACCTTTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020374.6
CDS-3UTR CAA 90 bp GTGTCTGGGGGACACAATGACACCCAAGGACTGCCTATCCAAAATTATCTCTGCCTACAAACTTCTTTCTaGAAGCACCAAACATGCTGT +
Preference number: 5 (lower is better)
Translates to: VSGGHNDTQGLPIQNYLCLQTSF*KHQTCC
Trigger: ACAGCATGTTTGGTGCTTCAAGAAAGAAGTTTGTAG...GCAGAGATAATTTTGGATAGGCAGTCCTTGGGTGTCATTGTGTCCCCCAGACAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020374.6
CDS-3UTR CAA 90 bp CATCAGCTCTGCAGTTATGTCGAGTATTGTGCTGAGACAGCCATACCCCAAGAACTGTCGAGAAGGCTGTaGCTTTGGCATACATATTAT +
Preference number: 5 (lower is better)
Translates to: HQLCSYVEYCAETAIPQELSRRL*LWHTYY
Trigger: ATAATATGTATGCCAAAGCAACAGCCTTCTCGACAG...TTCTTGGGGTATGGCTGTCTCAGCACAATACTCGACATAACTGCAGAGCTGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp TATTGCATCCATGCACACCTCCTAAAAATGAGGTACAGCAGGGCAAACATTTTCGCCAATCATTCCAAATaGGTCCGTCACCATCCCTTG +
Preference number: 5 (lower is better)
Translates to: YCIHAHLLKMRYSRANIFANHSK*VRHHPL
Trigger: CAAGGGATGGTGACGGACCAATTTGGAATGATTGGC...GAAAATGTTTGCCCTGCTGTACCTCATTTTTAGGAGGTGTGCATGGATGCAATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CAA 90 bp TGCTTTGGCATACATATTATGCTTGGCGAGCTTCTGTTGGGGCTACCTAACCCTAACTTCTTTCAACATTaGCTACTCTGGGGATGGGAA +
Preference number: 5 (lower is better)
Translates to: CFGIHIMLGELLLGLPNPNFFQH*LLWGWE
Trigger: TTCCCATCCCCAGAGTAGCAAATGTTGAAAGAAGTT...AGGGTTAGGTAGCCCCAACAGAAGCTCGCCAAGCATAATATGTATGCCAAAGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000169507.8
ENSMUST00000218490.2
CDS-3UTR CAA 90 bp CATCAGCTCTGCAGTTATGTCGAGTATTGTGCTGAGACAGCCATACCCCAAGAACTACAAACTTCTTTCTaGAAGCACCAAACATGCTGT +
Preference number: 5 (lower is better)
Translates to: HQLCSYVEYCAETAIPQELQTSF*KHQTCC
Trigger: ACAGCATGTTTGGTGCTTCAAGAAAGAAGTTTGTAG...TTCTTGGGGTATGGCTGTCTCAGCACAATACTCGACATAACTGCAGAGCTGATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105267.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp ATGTCCCATTTTCATATATTGCATCCATGCACACCTCCTAAAAATGAGGTACAGGCAAAATACCCCTGCTaGGAGATGGAGGCGTGTGAA +
Preference number: 5 (lower is better)
Translates to: MSHFHILHPCTPPKNEVQAKYPC*EMEACE
Trigger: TTCACACGCCTCCATCTCCAAGCAGGGGTATTTTGC...CTGTACCTCATTTTTAGGAGGTGTGCATGGATGCAATATATGAAAATGGGACAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CAA 90 bp ATGTCCCATTTTCATATATTGCATCCATGCACACCTCCTAAAAATGAGGTACAGGGTTTATTAATGGAGTaGGGTTGCCGCTCCCTTCCC +
Preference number: 5 (lower is better)
Translates to: MSHFHILHPCTPPKNEVQGLLME*GCRSLP
Trigger: GGGAAGGGAGCGGCAACCCAACTCCATTAATAAACC...CTGTACCTCATTTTTAGGAGGTGTGCATGGATGCAATATATGAAAATGGGACAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CAA 90 bp CATCAGCTCTGCAGTTATGTCGAGTATTGTGCTGAGACAGCCATACCCCAAGAAAATCTTCGTTGTGTATaGAGAAGTCTTGGGATTGCT +
Preference number: 5 (lower is better)
Translates to: HQLCSYVEYCAETAIPQENLRCV*RSLGIA
Trigger: AGCAATCCCAAGACTTCTCAATACACAACGAAGATT...TTCTTGGGGTATGGCTGTCTCAGCACAATACTCGACATAACTGCAGAGCTGATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp CTGACCAGCAGTTCCAGAATGTCCCATTTTCATATATTGCATCCATGCACACCTGGCCGCTCTTCTAATTaGTCATATTCCAGATGGAAC +
Preference number: 5 (lower is better)
Translates to: LTSSSRMSHFHILHPCTPGRSSN*SYSRWN
Trigger: GTTCCATCTGGAATATGACAAATTAGAAGAGCGGCC...AGGTGTGCATGGATGCAATATATGAAAATGGGACATTCTGGAACTGCTGGTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CAA 90 bp ATGTCCCATTTTCATATATTGCATCCATGCACACCTCCTAAAAATGAGGTACAGTGTGAAGTGACATTGTaGGTACCCCTGTTGTTGGCG +
Preference number: 5 (lower is better)
Translates to: MSHFHILHPCTPPKNEVQCEVTL*VPLLLA
Trigger: CGCCAACAACAGGGGTACCAACAATGTCACTTCACA...CTGTACCTCATTTTTAGGAGGTGTGCATGGATGCAATATATGAAAATGGGACAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CAA 90 bp GAATGTCCCATTTTCATATATTGCATCCATGCACACCTCCTAAAAATGAGGTACGCGTGTGAAGTGACATaGTTGGTACCCCTGTTGTTG +
Preference number: 5 (lower is better)
Translates to: ECPIFIYCIHAHLLKMRYACEVT*LVPLLL
Trigger: CAACAACAGGGGTACCAACAATGTCACTTCACACGC...GTACCTCATTTTTAGGAGGTGTGCATGGATGCAATATATGAAAATGGGACATTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CAA 90 bp TCGCTCATCCTTCCAAATGAAATACGAGAAGGATCTTCACATAAAAATGCACAAGGTTTATTAATGGAGTaGGGTTGCCGCTCCCTTCCC +
Preference number: 5 (lower is better)
Translates to: SLILPNEIREGSSHKNAQGLLME*GCRSLP
Trigger: GGGAAGGGAGCGGCAACCCAACTCCATTAATAAACC...TTGTGCATTTTTATGTGAAGATCCTTCTCGTATTTCATTTGGAAGGATGAGCGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CAA 90 bp AGTTATGTCGAGTATTGTGCTGAGACAGCCATACCCCAAGAAAAGGGAAGTCTTCGTCATTACTTGACGTaGGATCTTTATAGCTGGAAC +
Preference number: 5 (lower is better)
Translates to: SYVEYCAETAIPQEKGSLRHYLT*DLYSWN
Trigger: GTTCCAGCTATAAAGATCCAACGTCAAGTAATGACG...AAGACTTCCCTTTTCTTGGGGTATGGCTGTCTCAGCACAATACTCGACATAACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp AGTTATGTCGAGTATTGTGCTGAGACAGCCATACCCCAAGAAAAGGGAAGTCTTTGCTGTCGTCATTACTaGACGTTGGATCTTTATAGC +
Preference number: 5 (lower is better)
Translates to: SYVEYCAETAIPQEKGSLCCRHY*TLDLYS
Trigger: GCTATAAAGATCCAACGTCAAGTAATGACGACAGCA...AAGACTTCCCTTTTCTTGGGGTATGGCTGTCTCAGCACAATACTCGACATAACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp CTGACCAGCAGTTCCAGAATGTCCCATTTTCATATATTGCATCCATGCACACCTTTATCTCCAGGGAATTaGGGTCCATCTGTACTTGAA +
Preference number: 5 (lower is better)
Translates to: LTSSSRMSHFHILHPCTPLSPGN*GPSVLE
Trigger: TTCAAGTACAGATGGACCCAAATTCCCTGGAGATAA...AGGTGTGCATGGATGCAATATATGAAAATGGGACATTCTGGAACTGCTGGTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CAA 90 bp GAATGTCCCATTTTCATATATTGCATCCATGCACACCTCCTAAAAATGAGGTACCCATATCGGCCAAGTTaGATTGCAGCCAGCTTATCC +
Preference number: 5 (lower is better)
Translates to: ECPIFIYCIHAHLLKMRYPYRPS*IAASLS
Trigger: GGATAAGCTGGCTGCAATCAAACTTGGCCGATATGG...GTACCTCATTTTTAGGAGGTGTGCATGGATGCAATATATGAAAATGGGACATTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CAA 90 bp TCGCTCATCCTTCCAAATGAAATACGAGAAGGATCTTCACATAAAAATGCACAATGTGAAGTGACATTGTaGGTACCCCTGTTGTTGGCG +
Preference number: 5 (lower is better)
Translates to: SLILPNEIREGSSHKNAQCEVTL*VPLLLA
Trigger: CGCCAACAACAGGGGTACCAACAATGTCACTTCACA...TTGTGCATTTTTATGTGAAGATCCTTCTCGTATTTCATTTGGAAGGATGAGCGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CAA 90 bp TCTGTCAGTGTACTTGCTTGTCTTTATAGACCCAAGTCTGTCTGCTGGCAAAAATTATCTCCAGGGAATTaGGGTCCATCTGTACTTGAA +
Preference number: 5 (lower is better)
Translates to: SVSVLACLYRPKSVCWQKLSPGN*GPSVLE
Trigger: TTCAAGTACAGATGGACCCAAATTCCCTGGAGATAA...TTTTTGCCAGCAGACAGACTTGGGTCTATAAAGACAAGCAAGTACACTGACAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000105265.8
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
ENSMUST00000169921.8
CDS-3UTR CAA 90 bp GAATGTCCCATTTTCATATATTGCATCCATGCACACCTCCTAAAAATGAGGTACGAGAAGGCTGTTGCTTaGGCATACATATTATGCTTG +
Preference number: 5 (lower is better)
Translates to: ECPIFIYCIHAHLLKMRYEKAVA*AYILCL
Trigger: CAAGCATAATATGTATGCCAAAGCAACAGCCTTCTC...GTACCTCATTTTTAGGAGGTGTGCATGGATGCAATATATGAAAATGGGACATTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CAA 90 bp GAATGTCCCATTTTCATATATTGCATCCATGCACACCTCCTAAAAATGAGGTACCTGTCGAGAAGGCTGTaGCTTTGGCATACATATTAT +
Preference number: 5 (lower is better)
Translates to: ECPIFIYCIHAHLLKMRYLSRRL*LWHTYY
Trigger: ATAATATGTATGCCAAAGCAACAGCCTTCTCGACAG...GTACCTCATTTTTAGGAGGTGTGCATGGATGCAATATATGAAAATGGGACATTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CAA 90 bp ATGTCCCATTTTCATATATTGCATCCATGCACACCTCCTAAAAATGAGGTACAGCTTGGGATTGCTCATTaGCAGGTTTTGTTACCATTC +
Preference number: 5 (lower is better)
Translates to: MSHFHILHPCTPPKNEVQLGIAH*QVLLPF
Trigger: GAATGGTAACAAAACCTGCAAATGAGCAATCCCAAG...CTGTACCTCATTTTTAGGAGGTGTGCATGGATGCAATATATGAAAATGGGACAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS-3UTR CAA 90 bp GAATGTCCCATTTTCATATATTGCATCCATGCACACCTCCTAAAAATGAGGTACAATCTTCGTTGTGTATaGAGAAGTCTTGGGATTGCT +
Preference number: 5 (lower is better)
Translates to: ECPIFIYCIHAHLLKMRYNLRCV*RSLGIA
Trigger: AGCAATCCCAAGACTTCTCAATACACAACGAAGATT...GTACCTCATTTTTAGGAGGTGTGCATGGATGCAATATATGAAAATGGGACATTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105267.8
ENSMUST00000164088.8
ENSMUST00000168036.8
CDS CAA 72 bp GGTAGTCGCTGTCCACCCCCTCTACAAACTTCTTTCTaGAAGCACCAAACATGCTGTTTGTCACCTGGTAGT +
Preference number: 6 (lower is better)
Translates to: GSRCPPPLQTSF*KHQTCCLSPGS
Trigger: ACTACCAGGTGACAAACAGCATGTTTGGTGCTTCAAGAAAGAAGTTTGTAGAGGGGGTGGACAGCGACTACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000020374.6
ENSMUST00000105267.8
ENSMUST00000167706.8
ENSMUST00000169921.8
ENSMUST00000218744.2
CDS TCA 72 bp GTAGTCGCTGTCCACCCCCTCTACAAACTTCTTTCTTaGAGCACCAAACATGCTGTTTGTCACCTGGTAGTT +
Preference number: 6 (lower is better)
Translates to: VVAVHPLYKLLS*STKHAVCHLVV
Trigger: AACTACCAGGTGACAAACAGCATGTTTGGTGCTTCAAGAAAGAAGTTTGTAGAGGGGGTGGACAGCGACTAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000020374.6
ENSMUST00000105267.8
ENSMUST00000167706.8
ENSMUST00000169921.8
ENSMUST00000218744.2
CDS CAA 90 bp TCTCATCATGGTAGTCGCTGTCCACCCCCTCTACAAACTTCTTTCTaGAAGCACCAAACATGCTGTTTGTCACCTGGTAGTTTCTTTTCT +
Preference number: 6 (lower is better)
Translates to: SHHGSRCPPPLQTSF*KHQTCCLSPGSFFS
Trigger: AGAAAAGAAACTACCAGGTGACAAACAGCATGTTTGGTGCTTCAAGAAAGAAGTTTGTAGAGGGGGTGGACAGCGACTACCATGATGAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000020374.6
ENSMUST00000105267.8
ENSMUST00000167706.8
ENSMUST00000169921.8
ENSMUST00000218744.2
CDS CCA 72 bp GATAAGAAAGGAGTCCAACCAGAACATGATAAACGATaGGATTCTTCTGCTCTGGTAGTTTCTTTTCTCAGA +
Preference number: 6 (lower is better)
Translates to: DKKGVQPEHDKR*DSSALVVSFLR
Trigger: TCTGAGAAAAGAAACTACCAGAGCAGAAGAATCCCATCGTTTATCATGTTCTGGTTGGACTCCTTTCTTATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169576.8