RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CNNM2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000064105

Ensembl transcript IDs: ENSMUST00000077666.6, ENSMUST00000099373.12

Found 269 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GTTCGACAGCGACACCCACCGGGCACAGAGGAAAGGTATCCCTCCTaGGGACGGCCAGGGAAGGCCGTTAAAGGGGCAAGTCCATCCTGT +
Preference number: 1 (lower is better)
Translates to: VRQRHPPGTEERYPS*GRPGKAVKGASPSC
Trigger: ACAGGATGGACTTGCCCCTTTAACGGCCTTCCCTGGCCGTCCCCAGGAGGGATACCTTTCCTCTGTGCCCGGTGGGTGTCGCTGTCGAAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR TCA 90 bp AATGGCCACATCCGAAGCAGGGCCACCTTTGAACAGGGCCACTGCTaGACTCCACAGCCCAGGGACAACATGGGAGGGGCACTTGGCTCT +
Preference number: 1 (lower is better)
Translates to: NGHIRSRATFEQGHC*TPQPRDNMGGALGS
Trigger: AGAGCCAAGTGCCCCTCCCATGTTGTCCCTGGGCTGTGGAGTTCAGCAGTGGCCCTGTTCAAAGGTGGCCCTGCTTCGGATGTGGCCATT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR TCA 90 bp CAAGGTGCTTCTCTTCCAGAGGCTCCTTCCTGGGGCAAGGCTGTCTaGGGCAGAGGTGTACCATGCCTGAGGGGCAGCAGAGTGGAACAC +
Preference number: 1 (lower is better)
Translates to: QGASLPEAPSWGKAV*GRGVPCLRGSRVEH
Trigger: GTGTTCCACTCTGCTGCCCCTCAGGCATGGTACACCTCTGCCTCAGACAGCCTTGCCCCAGGAAGGAGCCTCTGGAAGAGAAGCACCTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR CCA 90 bp GGAAGGCCGTTAAAGGGGCAAGTCCATCCTGTCGGGGTCACACGGTaGGGCTACAGCAGAGTTAGCTTGGAAAGACCAACTTCAAACTCT +
Preference number: 1 (lower is better)
Translates to: GRPLKGQVHPVGVTR*GYSRVSLERPTSNS
Trigger: AGAGTTTGAAGTTGGTCTTTCCAAGCTAACTCTGCTGTAGCCCCACCGTGTGACCCCGACAGGATGGACTTGCCCCTTTAACGGCCTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR CCA 90 bp CCTTTGAACAGGGCCACTGCTGAACTCCACAGCCCAGGGACAACATaGGAGGGGCACTTGGCTCTATGGAAGGAAGGGCATTTCATTAGA +
Preference number: 1 (lower is better)
Translates to: PLNRATAELHSPGTT*EGHLALWKEGHFIR
Trigger: TCTAATGAAATGCCCTTCCTTCCATAGAGCCAAGTGCCCCTCCCATGTTGTCCCTGGGCTGTGGAGTTCAGCAGTGGCCCTGTTCAAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR CCA 90 bp CCACTGCTGAACTCCACAGCCCAGGGACAACATGGGAGGGGCACTTaGCTCTATGGAAGGAAGGGCATTTCATTAGAAACAGGGTCTAGA +
Preference number: 1 (lower is better)
Translates to: PLLNSTAQGQHGRGT*LYGRKGISLETGSR
Trigger: TCTAGACCCTGTTTCTAATGAAATGCCCTTCCTTCCATAGAGCCAAGTGCCCCTCCCATGTTGTCCCTGGGCTGTGGAGTTCAGCAGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR CCA 90 bp ATTTGGTTTCTGAATCGATTTGGGGTCAAACTGACTCTGGCTGTATaGGTGGCTCTCTGGCAATGGCCACATCCGAAGCAGGGCCACCTT +
Preference number: 1 (lower is better)
Translates to: IWFLNRFGVKLTLAV*VALWQWPHPKQGHL
Trigger: AAGGTGGCCCTGCTTCGGATGTGGCCATTGCCAGAGAGCCACCCATACAGCCAGAGTCAGTTTGACCCCAAATCGATTCAGAAACCAAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR TCA 90 bp CCGACACCCACAGTGACGACAGACTTGGCACGTTCTGCAGTGACATaGTTTTTCTTCATTCATCCATCAAGTTCGACAGCGACACCCACC +
Preference number: 1 (lower is better)
Translates to: PTPTVTTDLARSAVT*FFFIHPSSSTATPT
Trigger: GGTGGGTGTCGCTGTCGAACTTGATGGATGAATGAAGAAAAATCATGTCACTGCAGAACGTGCCAAGTCTGTCGTCACTGTGGGTGTCGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR GCA 90 bp GCAGCTTCCGCCGACACCCACAGTGACGACAGACTTGGCACGTTCTaGAGTGACATGATTTTTCTTCATTCATCCATCAAGTTCGACAGC +
Preference number: 1 (lower is better)
Translates to: AASADTHSDDRLGTF*SDMIFLHSSIKFDS
Trigger: GCTGTCGAACTTGATGGATGAATGAAGAAAAATCATGTCACTGCAGAACGTGCCAAGTCTGTCGTCACTGTGGGTGTCGGCGGAAGCTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR CCA 90 bp TCAGGGAAGGGGCCAGCTAGAAGCTTGTTGGAAGGACTCTGGCCCTaGCCACACTCAGAGAGCTTACATCTGAACATAATATGCTCCTTA +
Preference number: 1 (lower is better)
Translates to: SGKGPARSLLEGLWP*PHSESLHLNIICSL
Trigger: TAAGGAGCATATTATGTTCAGATGTAAGCTCTCTGAGTGTGGCCAGGGCCAGAGTCCTTCCAACAAGCTTCTAGCTGGCCCCTTCCCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR TCA 90 bp ACCTGGGTAATGAGAAGCCCACTGAACACTGGCCAGGAGTTCATTTaGGTGTATGAGCACTGCCAGCAAATGCAAGGAAGGAACCTTTTA +
Preference number: 1 (lower is better)
Translates to: TWVMRSPLNTGQEFI*VYEHCQQMQGRNLL
Trigger: TAAAAGGTTCCTTCCTTGCATTTGCTGGCAGTGCTCATACACTCAAATGAACTCCTGGCCAGTGTTCAGTGGGCTTCTCATTACCCAGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR TCA 90 bp AATGAGAAGCCCACTGAACACTGGCCAGGAGTTCATTTGAGTGTATaGGCACTGCCAGCAAATGCAAGGAAGGAACCTTTTAAAAGAAGC +
Preference number: 1 (lower is better)
Translates to: NEKPTEHWPGVHLSV*ALPANARKEPFKRS
Trigger: GCTTCTTTTAAAAGGTTCCTTCCTTGCATTTGCTGGCAGTGCTCATACACTCAAATGAACTCCTGGCCAGTGTTCAGTGGGCTTCTCATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR TCA 90 bp ATAACACATGGTAAATTTGGTATTGAAGTAAGACAGAGACACACATaGAATGGCCACAACACACATTTGGTTTCTGAATCGATTTGGGGT +
Preference number: 1 (lower is better)
Translates to: ITHGKFGIEVRQRHT*NGHNTHLVSESIWG
Trigger: ACCCCAAATCGATTCAGAAACCAAATGTGTGTTGTGGCCATTTCATGTGTGTCTCTGTCTTACTTCAATACCAAATTTACCATGTGTTAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR-3UTR TCA 90 bp GCCACATCCGAAGCAGGGCCACCTTTGAACAGGGCCACTGCTGAACTCCACAGCGGGGTGGGGGCTAGCTaGTGTCCCAGACCACCAGAG +
Preference number: 2 (lower is better)
Translates to: ATSEAGPPLNRATAELHSGVGAS*CPRPPE
Trigger: CTCTGGTGGTCTGGGACATCAGCTAGCCCCCACCCC...GCTGTGGAGTTCAGCAGTGGCCCTGTTCAAAGGTGGCCCTGCTTCGGATGTGGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR-3UTR GCA 90 bp TGCTTCTCTTCCAGAGGCTCCTTCCTGGGGCAAGGCTGTCTGAGGCAGAGGTGTCCTGAGGGTTCCCTGTaGAGGAAGCCCAGGCCCACA +
Preference number: 2 (lower is better)
Translates to: CFSSRGSFLGQGCLRQRCPEGSL*RKPRPT
Trigger: TGTGGGCCTGGGCTTCCTGCACAGGGAACCCTCAGG...ACACCTCTGCCTCAGACAGCCTTGCCCCAGGAAGGAGCCTCTGGAAGAGAAGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR-3UTR CCA 90 bp GTGCTTCTCTTCCAGAGGCTCCTTCCTGGGGCAAGGCTGTCTGAGGCAGAGGTGCATGGGAGGGGCACTTaGCTCTATGGAAGGAAGGGC +
Preference number: 2 (lower is better)
Translates to: VLLFQRLLPGARLSEAEVHGRGT*LYGRKG
Trigger: GCCCTTCCTTCCATAGAGCCAAGTGCCCCTCCCATG...CACCTCTGCCTCAGACAGCCTTGCCCCAGGAAGGAGCCTCTGGAAGAGAAGCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR-3UTR GCA 90 bp CACAGCCCAGGGACAACATGGGAGGGGCACTTGGCTCTATGGAAGGAAGGGCATGTCCACCTCCCACCCTaGCCACCCCACTCAGATAAT +
Preference number: 2 (lower is better)
Translates to: HSPGTTWEGHLALWKEGHVHLPP*PPHSDN
Trigger: ATTATCTGAGTGGGGTGGGCAGGGTGGGAGGTGGAC...ATGCCCTTCCTTCCATAGAGCCAAGTGCCCCTCCCATGTTGTCCCTGGGCTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR-3UTR CCA 90 bp CAGCTGTGGATGTCACGTGTCCAGTTTCCATCCCTCCCCCAGCCGTCCTCCGCGAAGGGGCAAAGTCTTTaGTCTCAAGGCTGTAGGACG +
Preference number: 2 (lower is better)
Translates to: QLWMSRVQFPSLPQPSSAKGQSL*SQGCRT
Trigger: CGTCCTACAGCCTTGAGACCAAAGACTTTGCCCCTT...CGCGGAGGACGGCTGGGGGAGGGATGGAAACTGGACACGTGACATCCACAGCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
3UTR-3UTR TCA 90 bp GGGTACTCACTGTGTGGGGTTCCCCATGATAGGAACTTCATCCCAAAGTGGCAGAGCAGACCTCCTACCTaGAGGAGGAGGCTGGCGCTG +
Preference number: 2 (lower is better)
Translates to: GYSLCGVPHDRNFIPKWQSRPPT*RRRLAL
Trigger: CAGCGCCAGCCTCCTCCTTCAGGTAGGAGGTCTGCT...CTGCCACTTTGGGATGAAGTTCCTATCATGGGGAACCCCACACAGTGAGTACCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR-3UTR TCA 90 bp GCACGCGCACACGCACACGCACAGAGTTTTCAGAGTCATCAGGTATTCAACAAACGCCGACACCCACAGTaGCGACAGACTTGGCACGTT +
Preference number: 2 (lower is better)
Translates to: ARAHAHAQSFQSHQVFNKRRHPQ*RQTWHV
Trigger: AACGTGCCAAGTCTGTCGTCACTGTGGGTGTCGGCG...TTTGTTGAATACCTGATGACTCTGAAAACTCTGTGCGTGTGCGTGTGCGCGTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR-3UTR TCA 90 bp CTAGGTACCGGTAGCAGGTCACTCAGCTCCTTTAAAAGCTACTCTCAACGACCCAAGCAGGGCCACCTTTaGACAGGGCCACTGCTGAAC +
Preference number: 2 (lower is better)
Translates to: LGTGSRSLSSFKSYSQRPKQGHL*TGPLLN
Trigger: GTTCAGCAGTGGCCCTGTTCAAAGGTGGCCCTGCTT...GGGTCGTTGAGAGTAGCTTTTAAAGGAGCTGAGTGACCTGCTACCGGTACCTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR-3UTR CCA 90 bp CACCAGAGGTTACAGGAATGGGGGATGAAGTCATTGCCTCCTGCCAATGATAAAGAAAGGTATCCCTCCTaGGGACGGCCAGGGAAGGCC +
Preference number: 2 (lower is better)
Translates to: HQRLQEWGMKSLPPANDKERYPS*GRPGKA
Trigger: GGCCTTCCCTGGCCGTCCCCAGGAGGGATACCTTTC...TTTATCATTGGCAGGAGGCAATGACTTCATCCCCCATTCCTGTAACCTCTGGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR-3UTR CCA 90 bp GGGTACTCACTGTGTGGGGTTCCCCATGATAGGAACTTCATCCCAAAGTGGCAGCCTGTAGCAGCAGCTTaGGTTAGCAAGAGTGAGGGG +
Preference number: 2 (lower is better)
Translates to: GYSLCGVPHDRNFIPKWQPVAAA*VSKSEG
Trigger: CCCCTCACTCTTGCTAACCCAAGCTGCTGCTACAGG...CTGCCACTTTGGGATGAAGTTCCTATCATGGGGAACCCCACACAGTGAGTACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR CAA 90 bp GCCACCACCACATGTTCATTAAGAAGCCCCATGGAAGGTTTCCACTaGGCACCTGTAGCAGCAGCTTGGGTTAGCAAGAGTGAGGGGTTG +
Preference number: 2 (lower is better)
Translates to: ATTTCSLRSPMEGFH*APVAAAWVSKSEGL
Trigger: CAACCCCTCACTCTTGCTAACCCAAGCTGCTGCTACAGGTGCCAAGTGGAAACCTTCCATGGGGCTTCTTAATGAACATGTGGTGGTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR-3UTR CCA 90 bp TATTCAACAAAGGACCAACCCAACATGTCACCCTCCCAGAGTCCATCCTGGGGTAAGGGGCAAAGTCTTTaGTCTCAAGGCTGTAGGACG +
Preference number: 2 (lower is better)
Translates to: YSTKDQPNMSPSQSPSWGKGQSL*SQGCRT
Trigger: CGTCCTACAGCCTTGAGACCAAAGACTTTGCCCCTT...ACCCCAGGATGGACTCTGGGAGGGTGACATGTTGGGTTGGTCCTTTGTTGAATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR-3UTR CCA 90 bp AAAGGTATCCCTCCTGGGGACGGCCAGGGAAGGCCGTTAAAGGGGCAAGTCCATACAGCAGAGTTAGCTTaGAAAGACCAACTTCAAACT +
Preference number: 2 (lower is better)
Translates to: KGIPPGDGQGRPLKGQVHTAELA*KDQLQT
Trigger: AGTTTGAAGTTGGTCTTTCCAAGCTAACTCTGCTGT...ATGGACTTGCCCCTTTAACGGCCTTCCCTGGCCGTCCCCAGGAGGGATACCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR-3UTR CCA 90 bp CTGGCCCTGGCCACACTCAGAGAGCTTACATCTGAACATAATATGCTCCTTATTCTCTGGCTGTATGGGTaGCTCTCTGGCAATGGCCAC +
Preference number: 2 (lower is better)
Translates to: LALATLRELTSEHNMLLILWLYG*LSGNGH
Trigger: GTGGCCATTGCCAGAGAGCCACCCATACAGCCAGAG...AATAAGGAGCATATTATGTTCAGATGTAAGCTCTCTGAGTGTGGCCAGGGCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR-3UTR CCA 90 bp GCACGCGCACACGCACACGCACAGAGTTTTCAGAGTCATCAGGTATTCAACAAATCTCCAGCAGTGACCTaGGTAATGAGAAGCCCACTG +
Preference number: 2 (lower is better)
Translates to: ARAHAHAQSFQSHQVFNKSPAVT*VMRSPL
Trigger: CAGTGGGCTTCTCATTACCCAGGTCACTGCTGGAGA...TTTGTTGAATACCTGATGACTCTGAAAACTCTGTGCGTGTGCGTGTGCGCGTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR CAA 90 bp ATAAACATGATTCTATTTGGGTGGAAGAAGTTTGTCTCCGAATTCTaGAAAGCCATGCCCCAGCTGTGGATGTCACGTGTCCAGTTTCCA +
Preference number: 2 (lower is better)
Translates to: INMILFGWKKFVSEF*KAMPQLWMSRVQFP
Trigger: TGGAAACTGGACACGTGACATCCACAGCTGGGGCATGGCTTTCAAGAATTCGGAGACAAACTTCTTCCACCCAAATAGAATCATGTTTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
3UTR-3UTR GCA 90 bp GAATCGATTTGGGGTCAAACTGACTCTGGCTGTATGGGTGGCTCTCTGGCAATGACCAACTTCAAACTCTaGAAAAGACACTTAGAAACA +
Preference number: 2 (lower is better)
Translates to: ESIWGQTDSGCMGGSLAMTNFKL*KRHLET
Trigger: TGTTTCTAAGTGTCTTTTGCAGAGTTTGAAGTTGGT...CATTGCCAGAGAGCCACCCATACAGCCAGAGTCAGTTTGACCCCAAATCGATTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR-3UTR CCA 90 bp GCACGCGCACACGCACACGCACAGAGTTTTCAGAGTCATCAGGTATTCAACAAAATGATTCTATTTGGGTaGAAGAAGTTTGTCTCCGAA +
Preference number: 2 (lower is better)
Translates to: ARAHAHAQSFQSHQVFNKMILFG*KKFVSE
Trigger: TTCGGAGACAAACTTCTTCCACCCAAATAGAATCAT...TTTGTTGAATACCTGATGACTCTGAAAACTCTGTGCGTGTGCGTGTGCGCGTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR CCA 72 bp CGACACCCACCGGGCACAGAGGAAAGGTATCCCTCCTaGGGACGGCCAGGGAAGGCCGTTAAAGGGGCAAGT +
Preference number: 3 (lower is better)
Translates to: RHPPGTEERYPS*GRPGKAVKGAS
Trigger: ACTTGCCCCTTTAACGGCCTTCCCTGGCCGTCCCCAGGAGGGATACCTTTCCTCTGTGCCCGGTGGGTGTCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR GCA 72 bp TCAGTGGGCATGGCACCAGACGCCCGAGCCAAGGTCTaGGGGTGTGGCAGTGATAGAGCACCTGCCAAGGAT +
Preference number: 3 (lower is better)
Translates to: SVGMAPDARAKV*GCGSDRAPAKD
Trigger: ATCCTTGGCAGGTGCTCTATCACTGCCACACCCGCAGACCTTGGCTCGGGCGTCTGGTGCCATGCCCACTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR CCA 72 bp CCCAGGCCTCAGGGAAGGGGCCAGCTAGAAGCTTGTTaGAAGGACTCTGGCCCTGGCCACACTCAGAGAGCT +
Preference number: 3 (lower is better)
Translates to: PRPQGRGQLEAC*KDSGPGHTQRA
Trigger: AGCTCTCTGAGTGTGGCCAGGGCCAGAGTCCTTCCAACAAGCTTCTAGCTGGCCCCTTCCCTGAGGCCTGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR TCA 72 bp ATCCGAAGCAGGGCCACCTTTGAACAGGGCCACTGCTaGACTCCACAGCCCAGGGACAACATGGGAGGGGCA +
Preference number: 3 (lower is better)
Translates to: IRSRATFEQGHC*TPQPRDNMGGA
Trigger: TGCCCCTCCCATGTTGTCCCTGGGCTGTGGAGTTCAGCAGTGGCCCTGTTCAAAGGTGGCCCTGCTTCGGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR TCA 72 bp TCTCTTCCAGAGGCTCCTTCCTGGGGCAAGGCTGTCTaGGGCAGAGGTGTACCATGCCTGAGGGGCAGCAGA +
Preference number: 3 (lower is better)
Translates to: SLPEAPSWGKAV*GRGVPCLRGSR
Trigger: TCTGCTGCCCCTCAGGCATGGTACACCTCTGCCTCAGACAGCCTTGCCCCAGGAAGGAGCCTCTGGAAGAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR CCA 72 bp AGGGCCACTGCTGAACTCCACAGCCCAGGGACAACATaGGAGGGGCACTTGGCTCTATGGAAGGAAGGGCAT +
Preference number: 3 (lower is better)
Translates to: RATAELHSPGTT*EGHLALWKEGH
Trigger: ATGCCCTTCCTTCCATAGAGCCAAGTGCCCCTCCCATGTTGTCCCTGGGCTGTGGAGTTCAGCAGTGGCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR CCA 72 bp GTCCTCCGCGGCTTCCAGGGAAAGGGGCAAAGTCTTTaGTCTCAAGGCTGTAGGACGCAGCATGGCAGACAA +
Preference number: 3 (lower is better)
Translates to: VLRGFQGKGQSL*SQGCRTQHGRQ
Trigger: TTGTCTGCCATGCTGCGTCCTACAGCCTTGAGACCAAAGACTTTGCCCCTTTCCCTGGAAGCCGCGGAGGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
3UTR CCA 72 bp CCAGGCCCACAAAGGCTCTCTTCTCCAGCAGTGACCTaGGTAATGAGAAGCCCACTGAACACTGGCCAGGAG +
Preference number: 3 (lower is better)
Translates to: PGPQRLSSPAVT*VMRSPLNTGQE
Trigger: CTCCTGGCCAGTGTTCAGTGGGCTTCTCATTACCCAGGTCACTGCTGGAGAAGAGAGCCTTTGTGGGCCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR CCA 72 bp TTAAAGGGGCAAGTCCATCCTGTCGGGGTCACACGGTaGGGCTACAGCAGAGTTAGCTTGGAAAGACCAACT +
Preference number: 3 (lower is better)
Translates to: LKGQVHPVGVTR*GYSRVSLERPT
Trigger: AGTTGGTCTTTCCAAGCTAACTCTGCTGTAGCCCCACCGTGTGACCCCGACAGGATGGACTTGCCCCTTTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR CCA 72 bp CTGAATCGATTTGGGGTCAAACTGACTCTGGCTGTATaGGTGGCTCTCTGGCAATGGCCACATCCGAAGCAG +
Preference number: 3 (lower is better)
Translates to: LNRFGVKLTLAV*VALWQWPHPKQ
Trigger: CTGCTTCGGATGTGGCCATTGCCAGAGAGCCACCCATACAGCCAGAGTCAGTTTGACCCCAAATCGATTCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR CCA 72 bp AACTCCACAGCCCAGGGACAACATGGGAGGGGCACTTaGCTCTATGGAAGGAAGGGCATTTCATTAGAAACA +
Preference number: 3 (lower is better)
Translates to: NSTAQGQHGRGT*LYGRKGISLET
Trigger: TGTTTCTAATGAAATGCCCTTCCTTCCATAGAGCCAAGTGCCCCTCCCATGTTGTCCCTGGGCTGTGGAGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR CCA 72 bp GGGCCAGCTAGAAGCTTGTTGGAAGGACTCTGGCCCTaGCCACACTCAGAGAGCTTACATCTGAACATAATA +
Preference number: 3 (lower is better)
Translates to: GPARSLLEGLWP*PHSESLHLNII
Trigger: TATTATGTTCAGATGTAAGCTCTCTGAGTGTGGCCAGGGCCAGAGTCCTTCCAACAAGCTTCTAGCTGGCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR-3UTR CAA 90 bp GCACGCGCACACGCACACGCACAGAGTTTTCAGAGTCATCAGGTATTCAACAAATTTGTCTCCGAATTCTaGAAAGCCATGCCCCAGCTG +
Preference number: 3 (lower is better)
Translates to: ARAHAHAQSFQSHQVFNKFVSEF*KAMPQL
Trigger: CAGCTGGGGCATGGCTTTCAAGAATTCGGAGACAAA...TTTGTTGAATACCTGATGACTCTGAAAACTCTGTGCGTGTGCGTGTGCGCGTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR TCA 72 bp ATGAGAAGCCCACTGAACACTGGCCAGGAGTTCATTTaGGTGTATGAGCACTGCCAGCAAATGCAAGGAAGG +
Preference number: 3 (lower is better)
Translates to: MRSPLNTGQEFI*VYEHCQQMQGR
Trigger: CCTTCCTTGCATTTGCTGGCAGTGCTCATACACTCAAATGAACTCCTGGCCAGTGTTCAGTGGGCTTCTCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR-3UTR CAA 90 bp CTGGCCCTGGCCACACTCAGAGAGCTTACATCTGAACATAATATGCTCCTTATTACAGTGACGACAGACTaGGCACGTTCTGCAGTGACA +
Preference number: 3 (lower is better)
Translates to: LALATLRELTSEHNMLLITVTTD*ARSAVT
Trigger: TGTCACTGCAGAACGTGCCAAGTCTGTCGTCACTGT...AATAAGGAGCATATTATGTTCAGATGTAAGCTCTCTGAGTGTGGCCAGGGCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR TCA 72 bp TTCTATTTGGGTGGAAGAAGTTTGTCTCCGAATTCTTaGAAGCCATGCCCCAGCTGTGGATGTCACGTGTCC +
Preference number: 3 (lower is better)
Translates to: FYLGGRSLSPNS*KPCPSCGCHVS
Trigger: GGACACGTGACATCCACAGCTGGGGCATGGCTTTCAAGAATTCGGAGACAAACTTCTTCCACCCAAATAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
3UTR TCA 72 bp CCCACTGAACACTGGCCAGGAGTTCATTTGAGTGTATaGGCACTGCCAGCAAATGCAAGGAAGGAACCTTTT +
Preference number: 3 (lower is better)
Translates to: PTEHWPGVHLSV*ALPANARKEPF
Trigger: AAAAGGTTCCTTCCTTGCATTTGCTGGCAGTGCTCATACACTCAAATGAACTCCTGGCCAGTGTTCAGTGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR GCA 72 bp CTAGAAATACCTAAGTATATTGTCCACCTCCCACCCTaGCCACCCCACTCAGATAATACACAAGTCCCAGCA +
Preference number: 3 (lower is better)
Translates to: LEIPKYIVHLPP*PPHSDNTQVPA
Trigger: TGCTGGGACTTGTGTATTATCTGAGTGGGGTGGGCAGGGTGGGAGGTGGACAATATACTTAGGTATTTCTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR-3UTR CAA 90 bp ACAACATGGGAGGGGCACTTGGCTCTATGGAAGGAAGGGCATTTCATTAGAAACTGGGGGATGAAGTCATaGCCTCCTGCCAATGATAAA +
Preference number: 3 (lower is better)
Translates to: TTWEGHLALWKEGHFIRNWGMKS*PPANDK
Trigger: TTTATCATTGGCAGGAGGCAATGACTTCATCCCCCA...GTTTCTAATGAAATGCCCTTCCTTCCATAGAGCCAAGTGCCCCTCCCATGTTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR CCA 72 bp AATGGCCACAACACACATTTGGTTTCTGAATCGATTTaGGGTCAAACTGACTCTGGCTGTATGGGTGGCTCT +
Preference number: 3 (lower is better)
Translates to: NGHNTHLVSESI*GQTDSGCMGGS
Trigger: AGAGCCACCCATACAGCCAGAGTCAGTTTGACCCCAAATCGATTCAGAAACCAAATGTGTGTTGTGGCCATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR TCA 72 bp ACAGTGACGACAGACTTGGCACGTTCTGCAGTGACATaGTTTTTCTTCATTCATCCATCAAGTTCGACAGCG +
Preference number: 3 (lower is better)
Translates to: TVTTDLARSAVT*FFFIHPSSSTA
Trigger: CGCTGTCGAACTTGATGGATGAATGAAGAAAAATCATGTCACTGCAGAACGTGCCAAGTCTGTCGTCACTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR CCA 72 bp GACAGAGACACACATGAAATGGCCACAACACACATTTaGTTTCTGAATCGATTTGGGGTCAAACTGACTCTG +
Preference number: 3 (lower is better)
Translates to: DRDTHEMATTHI*FLNRFGVKLTL
Trigger: CAGAGTCAGTTTGACCCCAAATCGATTCAGAAACCAAATGTGTGTTGTGGCCATTTCATGTGTGTCTCTGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR GCA 90 bp GGAAGTCATGGTCAGACCAAGTCCAGGAGGGCCGGACAAGGGGGCCCGAGGGGCGGGCAGTGCGGCGGCTaGCTGCCCGCCCGCCATCTT +
Preference number: 4 (lower is better)
Translates to: GSHGQTKSRRAGQGGPRGGQCGG*LPARHL
Trigger: AAGATGGCGGGCGGGCAGGCAGCCGCCGCACTGCCC...GCCCCTCGGGCCCCCTTGTCCGGCCCTCCTGGACTTGGTCTGACCATGACTTCC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR GCA 90 bp CAGCTGTGGATGTCACGTGTCCAGTTTCCATCCCTCCCCCAGCCGTCCTCCGCGCTTCCAAGTGGGCAGTaGGGCGGCTGCCTGCCCGCC +
Preference number: 4 (lower is better)
Translates to: QLWMSRVQFPSLPQPSSALPSGQ*GGCLPA
Trigger: GGCGGGCAGGCAGCCGCCGCACTGCCCACTTGGAAG...CGCGGAGGACGGCTGGGGGAGGGATGGAAACTGGACACGTGACATCCACAGCTG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR TCA 90 bp CCCAGCTGTGGATGTCACGTGTCCAGTTTCCATCCCTCCCCCAGCCGTCCTCCGCGTACACCCGCAGCTTaGCCCGGGTCCGCTCGCTCA +
Preference number: 4 (lower is better)
Translates to: PSCGCHVSSFHPSPSRPPRTPAA*PGSARS
Trigger: TGAGCGAGCGGACCCGGGTCAAGCTGCGGGTGTACG...CGGAGGACGGCTGGGGGAGGGATGGAAACTGGACACGTGACATCCACAGCTGGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR GCA 90 bp GGATGTCACGTGTCCAGTTTCCATCCCTCCCCCAGCCGTCCTCCGCGGCTTCCAGGTAGTTGCCCTGCCTaGGCACCGGCTCGATGCGCT +
Preference number: 4 (lower is better)
Translates to: GCHVSSFHPSPSRPPRLPGSCPA*APARCA
Trigger: AGCGCATCGAGCCGGTGCGCAGGCAGGGCAACTACC...TGGAAGCCGCGGAGGACGGCTGGGGGAGGGATGGAAACTGGACACGTGACATCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CCA 90 bp ATGCCCCAGCTGTGGATGTCACGTGTCCAGTTTCCATCCCTCCCCCAGCCGTCCCGTCCTCCACCGTCTTaGTGCGGAGCTCCAGCGCCC +
Preference number: 4 (lower is better)
Translates to: MPQLWMSRVQFPSLPQPSRPPPS*CGAPAP
Trigger: GGGCGCTGGAGCTCCGCACCAAGACGGTGGAGGACG...GGACGGCTGGGGGAGGGATGGAAACTGGACACGTGACATCCACAGCTGGGGCAT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR TCA 90 bp ATGCCCCAGCTGTGGATGTCACGTGTCCAGTTTCCATCCCTCCCCCAGCCGTCCCACCGCCACAAGGCCTaGGCCCGCAATGTCGTCCAG +
Preference number: 4 (lower is better)
Translates to: MPQLWMSRVQFPSLPQPSHRHKA*ARNVVQ
Trigger: CTGGACGACATTGCGGGCTCAGGCCTTGTGGCGGTG...GGACGGCTGGGGGAGGGATGGAAACTGGACACGTGACATCCACAGCTGGGGCAT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR GCA 90 bp AGCCGTCCTCCGCGGCTTCCAGGGAAAGGGGCAAAGTCTTTGGTCTCAAGGCTGTGCCGGCGCCGCTCGTaGTCAGTGAAGGCGATGCGG +
Preference number: 4 (lower is better)
Translates to: SRPPRLPGKGAKSLVSRLCRRRS*SVKAMR
Trigger: CCGCATCGCCTTCACTGAGCACGAGCGGCGCCGGCA...CAGCCTTGAGACCAAAGACTTTGCCCCTTTCCCTGGAAGCCGCGGAGGACGGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR GCA 90 bp CAGCTGTGGATGTCACGTGTCCAGTTTCCATCCCTCCCCCAGCCGTCCTCCGCGAGCACAGCAGGTAGTTaGCCTGCCTGCGCACCGGCT +
Preference number: 4 (lower is better)
Translates to: QLWMSRVQFPSLPQPSSASTAGS*PACAPA
Trigger: AGCCGGTGCGCAGGCAGGGCAACTACCTGCTGTGCT...CGCGGAGGACGGCTGGGGGAGGGATGGAAACTGGACACGTGACATCCACAGCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CCA 90 bp CAGCTGTGGATGTCACGTGTCCAGTTTCCATCCCTCCCCCAGCCGTCCTCCGCGCGCCTAGTGCGGGCGTaGAGAGAGACGTGCACAGGT +
Preference number: 4 (lower is better)
Translates to: QLWMSRVQFPSLPQPSSARLVRA*RETCTG
Trigger: ACCTGTGCACGTCTCTCTCCACGCCCGCACTAGGCG...CGCGGAGGACGGCTGGGGGAGGGATGGAAACTGGACACGTGACATCCACAGCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
3UTR CAA 72 bp CCCCAGGCCTCAGGGAAGGGGCCAGCTAGAAGCTTGTaGGAAGGACTCTGGCCCTGGCCACACTCAGAGAGC +
Preference number: 4 (lower is better)
Translates to: PQASGKGPARSL*EGLWPWPHSES
Trigger: GCTCTCTGAGTGTGGCCAGGGCCAGAGTCCTTCCAACAAGCTTCTAGCTGGCCCCTTCCCTGAGGCCTGGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR TCA 90 bp GGAAGTCATGGTCAGACCAAGTCCAGGAGGGCCGGACAAGGGGGCCCGAGGGGCCCGACTGAGAGAATCTaGGTGATTCAGGCCACAGGG +
Preference number: 4 (lower is better)
Translates to: GSHGQTKSRRAGQGGPRGPTERI*VIQATG
Trigger: CCCTGTGGCCTGAATCACTCAGATTCTCTCAGTCGG...GCCCCTCGGGCCCCCTTGTCCGGCCCTCCTGGACTTGGTCTGACCATGACTTCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR TCA 90 bp GGAAGTCATGGTCAGACCAAGTCCAGGAGGGCCGGACAAGGGGGCCCGAGGGGCGAACTGGAGAGGCTGTaGGGGCCATCACACCATAGT +
Preference number: 4 (lower is better)
Translates to: GSHGQTKSRRAGQGGPRGELERL*GPSHHS
Trigger: ACTATGGTGTGATGGCCCTCACAGCCTCTCCAGTTC...GCCCCTCGGGCCCCCTTGTCCGGCCCTCCTGGACTTGGTCTGACCATGACTTCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR GCA 90 bp TCCGCGGCTTCCAGGGAAAGGGGCAAAGTCTTTGGTCTCAAGGCTGTAGGACGCTGCCGGCGCCGCTCGTaGTCAGTGAAGGCGATGCGG +
Preference number: 4 (lower is better)
Translates to: SAASRERGKVFGLKAVGRCRRRS*SVKAMR
Trigger: CCGCATCGCCTTCACTGAGCACGAGCGGCGCCGGCA...GCGTCCTACAGCCTTGAGACCAAAGACTTTGCCCCTTTCCCTGGAAGCCGCGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR GCA 90 bp GGAAGTCATGGTCAGACCAAGTCCAGGAGGGCCGGACAAGGGGGCCCGAGGGGCTGCGCACCGGCTCGATaGGCTTGGCATAATTCTTCT +
Preference number: 4 (lower is better)
Translates to: GSHGQTKSRRAGQGGPRGCAPAR*AWHNSS
Trigger: AGAAGAATTATGCCAAGCGCATCGAGCCGGTGCGCA...GCCCCTCGGGCCCCCTTGTCCGGCCCTCCTGGACTTGGTCTGACCATGACTTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR GCA 90 bp GGCCAGGGAAGGCCGTTAAAGGGGCAAGTCCATCCTGTCGGGGTCACACGGTGGATGGCGCCTTCACTGTaGAGGCTGTGGTTGGCCTTG +
Preference number: 4 (lower is better)
Translates to: GQGRPLKGQVHPVGVTRWMAPSL*RLWLAL
Trigger: CAAGGCCAACCACAGCCTGCACAGTGAAGGCGCCAT...CCACCGTGTGACCCCGACAGGATGGACTTGCCCCTTTAACGGCCTTCCCTGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR CCA 90 bp CACAGCCCAGGGACAACATGGGAGGGGCACTTGGCTCTATGGAAGGAAGGGCATCCGCCATCTTCCAAGTaGGCAGTGCGGCGGCTGCCT +
Preference number: 4 (lower is better)
Translates to: HSPGTTWEGHLALWKEGHPPSSK*AVRRLP
Trigger: AGGCAGCCGCCGCACTGCCCACTTGGAAGATGGCGG...ATGCCCTTCCTTCCATAGAGCCAAGTGCCCCTCCCATGTTGTCCCTGGGCTGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR CCA 90 bp CCCAGCTGTGGATGTCACGTGTCCAGTTTCCATCCCTCCCCCAGCCGTCCTCCGCGTGTCGGGAGCAGATaGCTTGGGGCACGATTTCTC +
Preference number: 4 (lower is better)
Translates to: PSCGCHVSSFHPSPSRPPRVGSR*LGARFL
Trigger: GAGAAATCGTGCCCCAAGCCATCTGCTCCCGACACG...CGGAGGACGGCTGGGGGAGGGATGGAAACTGGACACGTGACATCCACAGCTGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CCA 90 bp GCCGTCCTCCGCGGCTTCCAGGGAAAGGGGCAAAGTCTTTGGTCTCAAGGCTGTACCGTGCCTATCTCCTaGCCCAGGACGCAGTCCAGC +
Preference number: 4 (lower is better)
Translates to: AVLRGFQGKGQSLWSQGCTVPIS*PRTQSS
Trigger: GCTGGACTGCGTCCTGGGCCAGGAGATAGGCACGGT...ACAGCCTTGAGACCAAAGACTTTGCCCCTTTCCCTGGAAGCCGCGGAGGACGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CCA 90 bp CATGCCCCAGCTGTGGATGTCACGTGTCCAGTTTCCATCCCTCCCCCAGCCGTCGCTGCTCCCCAAGGTTaGCGTCATGGCGTCAATCCG +
Preference number: 4 (lower is better)
Translates to: HAPAVDVTCPVSIPPPAVAAPQG*RHGVNP
Trigger: CGGATTGACGCCATGACGCCAACCTTGGGGAGCAGC...GACGGCTGGGGGAGGGATGGAAACTGGACACGTGACATCCACAGCTGGGGCATG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
3UTR CAA 72 bp ACTCCCCAGGCCTCAGGGAAGGGGCCAGCTAGAAGCTaGTTGGAAGGACTCTGGCCCTGGCCACACTCAGAG +
Preference number: 4 (lower is better)
Translates to: TPQASGKGPARS*LEGLWPWPHSE
Trigger: CTCTGAGTGTGGCCAGGGCCAGAGTCCTTCCAACAAGCTTCTAGCTGGCCCCTTCCCTGAGGCCTGGGGAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR TCA 90 bp AGGGGCAAAGTCTTTGGTCTCAAGGCTGTAGGACGCAGCATGGCAGACAAGCTCGCCGCTCGTGCTCAGTaGAGGCGATGCGGGACCACG +
Preference number: 4 (lower is better)
Translates to: RGKVFGLKAVGRSMADKLAARAQ*RRCGTT
Trigger: CGTGGTCCCGCATCGCCTTCACTGAGCACGAGCGGC...GAGCTTGTCTGCCATGCTGCGTCCTACAGCCTTGAGACCAAAGACTTTGCCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR TCA 90 bp ATGCCCCAGCTGTGGATGTCACGTGTCCAGTTTCCATCCCTCCCCCAGCCGTCCCAAGATGATGATGTCTaGGGTGCGGATGCCGCAGCG +
Preference number: 4 (lower is better)
Translates to: MPQLWMSRVQFPSLPQPSQDDDV*GADAAA
Trigger: CGCTGCGGCATCCGCACCTCAGACATCATCATCTTG...GGACGGCTGGGGGAGGGATGGAAACTGGACACGTGACATCCACAGCTGGGGCAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
3UTR CAA 72 bp TCTCTGGCAATGGCCACATCCGAAGCAGGGCCACCTTaGAACAGGGCCACTGCTGAACTCCACAGCCCAGGG +
Preference number: 4 (lower is better)
Translates to: SLAMATSEAGPP*NRATAELHSPG
Trigger: CCCTGGGCTGTGGAGTTCAGCAGTGGCCCTGTTCAAAGGTGGCCCTGCTTCGGATGTGGCCATTGCCAGAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR TCA 90 bp GGATGTCACGTGTCCAGTTTCCATCCCTCCCCCAGCCGTCCTCCGCGGCTTCCACGAAGGCCAAGTCTTTaGCAAAGAGCAGGTCCACGA +
Preference number: 4 (lower is better)
Translates to: GCHVSSFHPSPSRPPRLPRRPSL*QRAGPR
Trigger: TCGTGGACCTGCTCTTTGTCAAAGACTTGGCCTTCG...TGGAAGCCGCGGAGGACGGCTGGGGGAGGGATGGAAACTGGACACGTGACATCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR TCA 90 bp GGATGTCACGTGTCCAGTTTCCATCCCTCCCCCAGCCGTCCTCCGCGGCTTCCATCCGGTCGCTCCGACTaGGAGAATCTGAGTGATTCA +
Preference number: 4 (lower is better)
Translates to: GCHVSSFHPSPSRPPRLPSGRSD*ENLSDS
Trigger: TGAATCACTCAGATTCTCTCAGTCGGAGCGACCGGA...TGGAAGCCGCGGAGGACGGCTGGGGGAGGGATGGAAACTGGACACGTGACATCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR GCA 90 bp AGGGGCAAAGTCTTTGGTCTCAAGGCTGTAGGACGCAGCATGGCAGACAAGCTCAGTGCGGCGGCTGCCTaGCCGCCCGCCATCTTTACT +
Preference number: 4 (lower is better)
Translates to: RGKVFGLKAVGRSMADKLSAAAA*PPAIFT
Trigger: AGTAAAGATGGCGGGCGGGCAGGCAGCCGCCGCACT...GAGCTTGTCTGCCATGCTGCGTCCTACAGCCTTGAGACCAAAGACTTTGCCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR GCA 90 bp GGATGTCACGTGTCCAGTTTCCATCCCTCCCCCAGCCGTCCTCCGCGGCTTCCATCGTTGTTGATGTTCTaGCCGTACACCCGCAGCTTG +
Preference number: 4 (lower is better)
Translates to: GCHVSSFHPSPSRPPRLPSLLMF*PYTRSL
Trigger: CAAGCTGCGGGTGTACGGGCAGAACATCAACAACGA...TGGAAGCCGCGGAGGACGGCTGGGGGAGGGATGGAAACTGGACACGTGACATCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR GCA 90 bp GAATTCTTGAAAGCCATGCCCCAGCTGTGGATGTCACGTGTCCAGTTTCCATCCTGTCTGAGGTGCGGATaGCGCAGCGCTGGGGGCCGC +
Preference number: 4 (lower is better)
Translates to: EFLKAMPQLWMSRVQFPSCLRCG*RSAGGR
Trigger: GCGGCCCCCAGCGCTGCGGCATCCGCACCTCAGACA...GGATGGAAACTGGACACGTGACATCCACAGCTGGGGCATGGCTTTCAAGAATTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR GCA 90 bp ATTCAACAAAGGACCAACCCAACATGTCACCCTCCCAGAGTCCATCCTGGGGTTTGTCTGAGGTGCGGATaGCGCAGCGCTGGGGGCCGC +
Preference number: 4 (lower is better)
Translates to: IQQRTNPTCHPPRVHPGVCLRCG*RSAGGR
Trigger: GCGGCCCCCAGCGCTGCGGCATCCGCACCTCAGACA...AACCCCAGGATGGACTCTGGGAGGGTGACATGTTGGGTTGGTCCTTTGTTGAAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR GCA 90 bp GCCGTCCTCCGCGGCTTCCAGGGAAAGGGGCAAAGTCTTTGGTCTCAAGGCTGTCGCAGTTTTGCACGATaGGCAGCTCCATCGGGTCCA +
Preference number: 4 (lower is better)
Translates to: AVLRGFQGKGQSLWSQGCRSFAR*AAPSGP
Trigger: TGGACCCGATGGAGCTGCGCATCGTGCAAAACTGCG...ACAGCCTTGAGACCAAAGACTTTGCCCCTTTCCCTGGAAGCCGCGGAGGACGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR GCA 90 bp CAAAGGACCAACCCAACATGTCACCCTCCCAGAGTCCATCCTGGGGTTAGCAGAGGTAGTTGCCCTGCCTaGGCACCGGCTCGATGCGCT +
Preference number: 4 (lower is better)
Translates to: QRTNPTCHPPRVHPGVSRGSCPA*APARCA
Trigger: AGCGCATCGAGCCGGTGCGCAGGCAGGGCAACTACC...TCTGCTAACCCCAGGATGGACTCTGGGAGGGTGACATGTTGGGTTGGTCCTTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR CCA 90 bp TCCAGGGAAAGGGGCAAAGTCTTTGGTCTCAAGGCTGTAGGACGCAGCATGGCACCGCCATCTTCCAAGTaGGCAGTGCGGCGGCTGCCT +
Preference number: 4 (lower is better)
Translates to: SRERGKVFGLKAVGRSMAPPSSK*AVRRLP
Trigger: AGGCAGCCGCCGCACTGCCCACTTGGAAGATGGCGG...TGCCATGCTGCGTCCTACAGCCTTGAGACCAAAGACTTTGCCCCTTTCCCTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR TCA 90 bp GCCGTCCTCCGCGGCTTCCAGGGAAAGGGGCAAAGTCTTTGGTCTCAAGGCTGTACCACGTCTCGTTGTTaGTGTTCTGCCCGTACACCC +
Preference number: 4 (lower is better)
Translates to: AVLRGFQGKGQSLWSQGCTTSRC*CSARTP
Trigger: GGGTGTACGGGCAGAACATCAACAACGAGACGTGGT...ACAGCCTTGAGACCAAAGACTTTGCCCCTTTCCCTGGAAGCCGCGGAGGACGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR GCA 90 bp TGTGTGGGGTTCCCCATGATAGGAACTTCATCCCAAAGTGGCAGGCTAGGTACCAGTGCGGCGGCTGCCTaGCCGCCCGCCATCTTTACT +
Preference number: 4 (lower is better)
Translates to: CVGFPMIGTSSQSGRLGTSAAAA*PPAIFT
Trigger: AGTAAAGATGGCGGGCGGGCAGGCAGCCGCCGCACT...GGTACCTAGCCTGCCACTTTGGGATGAAGTTCCTATCATGGGGAACCCCACACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR GCA 90 bp CCCAGCTGTGGATGTCACGTGTCCAGTTTCCATCCCTCCCCCAGCCGTCCTCCGTCATTGTTCACTCGCTaGACAATGGCCAGGTGGGAT +
Preference number: 4 (lower is better)
Translates to: PSCGCHVSSFHPSPSRPPSLFTR*TMARWD
Trigger: ATCCCACCTGGCCATTGTGCAGCGAGTGAACAATGA...CGGAGGACGGCTGGGGGAGGGATGGAAACTGGACACGTGACATCCACAGCTGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CCA 90 bp TCCGCGGCTTCCAGGGAAAGGGGCAAAGTCTTTGGTCTCAAGGCTGTAGGACGCCGTGTCGGGAGCAGATaGCTTGGGGCACGATTTCTC +
Preference number: 4 (lower is better)
Translates to: SAASRERGKVFGLKAVGRRVGSR*LGARFL
Trigger: GAGAAATCGTGCCCCAAGCCATCTGCTCCCGACACG...GCGTCCTACAGCCTTGAGACCAAAGACTTTGCCCCTTTCCCTGGAAGCCGCGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CCA 90 bp GAATTCTTGAAAGCCATGCCCCAGCTGTGGATGTCACGTGTCCAGTTTCCATCCCGTCCTCCACCGTCTTaGTGCGGAGCTCCAGCGCCC +
Preference number: 4 (lower is better)
Translates to: EFLKAMPQLWMSRVQFPSRPPPS*CGAPAP
Trigger: GGGCGCTGGAGCTCCGCACCAAGACGGTGGAGGACG...GGATGGAAACTGGACACGTGACATCCACAGCTGGGGCATGGCTTTCAAGAATTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR TCA 90 bp TGTGTGGGGTTCCCCATGATAGGAACTTCATCCCAAAGTGGCAGGCTAGGTACCCCAGCCGCAGCCCGATaGTCACGGTCTCCTCGTTCT +
Preference number: 4 (lower is better)
Translates to: CVGFPMIGTSSQSGRLGTPAAAR*SRSPRS
Trigger: AGAACGAGGAGACCGTGATCATCGGGCTGCGGCTGG...GGTACCTAGCCTGCCACTTTGGGATGAAGTTCCTATCATGGGGAACCCCACACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR TCA 90 bp GAATCGATTTGGGGTCAAACTGACTCTGGCTGTATGGGTGGCTCTCTGGCAATGCACCGCCACAAGGCCTaGGCCCGCAATGTCGTCCAG +
Preference number: 4 (lower is better)
Translates to: ESIWGQTDSGCMGGSLAMHRHKA*ARNVVQ
Trigger: CTGGACGACATTGCGGGCTCAGGCCTTGTGGCGGTG...CATTGCCAGAGAGCCACCCATACAGCCAGAGTCAGTTTGACCCCAAATCGATTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR TCA 90 bp GTGCTTCTCTTCCAGAGGCTCCTTCCTGGGGCAAGGCTGTCTGAGGCAGAGGTGTCCGGTCGCTCCGACTaGGAGAATCTGAGTGATTCA +
Preference number: 4 (lower is better)
Translates to: VLLFQRLLPGARLSEAEVSGRSD*ENLSDS
Trigger: TGAATCACTCAGATTCTCTCAGTCGGAGCGACCGGA...CACCTCTGCCTCAGACAGCCTTGCCCCAGGAAGGAGCCTCTGGAAGAGAAGCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR GCA 90 bp TGTCTCCGAATTCTTGAAAGCCATGCCCCAGCTGTGGATGTCACGTGTCCAGTTCCTCCACCGTCTTGGTaGGGAGCTCCAGCGCCCCTT +
Preference number: 4 (lower is better)
Translates to: CLRILESHAPAVDVTCPVPPPSW*GAPAPL
Trigger: AAGGGGCGCTGGAGCTCCGCACCAAGACGGTGGAGG...AACTGGACACGTGACATCCACAGCTGGGGCATGGCTTTCAAGAATTCGGAGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR GCA 90 bp CAGCTGTGGATGTCACGTGTCCAGTTTCCATCCCTCCCCCAGCCGTCCTCCGCGAAGGCAGAGAAATCTTaGTTTCTTTCACGGTGGGCC +
Preference number: 4 (lower is better)
Translates to: QLWMSRVQFPSLPQPSSAKAEKS*FLSRWA
Trigger: GGCCCACCGTGAAAGAAAGCAAGATTTCTCTGCCTT...CGCGGAGGACGGCTGGGGGAGGGATGGAAACTGGACACGTGACATCCACAGCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR GCA 90 bp GGAAGTCATGGTCAGACCAAGTCCAGGAGGGCCGGACAAGGGGGCCCGAGGGGCAAGGCATTTTGGTATTaGTGTCTGGAGATCTTGACG +
Preference number: 4 (lower is better)
Translates to: GSHGQTKSRRAGQGGPRGKAFWY*CLEILT
Trigger: CGTCAAGATCTCCAGACAGCAATACCAAAATGCCTT...GCCCCTCGGGCCCCCTTGTCCGGCCCTCCTGGACTTGGTCTGACCATGACTTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CCA 90 bp CCCAGCTGTGGATGTCACGTGTCCAGTTTCCATCCCTCCCCCAGCCGTCCTCCGCCGGCTCGATGCGCTTaGCATAATTCTTCTCTTTCT +
Preference number: 4 (lower is better)
Translates to: PSCGCHVSSFHPSPSRPPPARCA*HNSSLS
Trigger: AGAAAGAGAAGAATTATGCCAAGCGCATCGAGCCGG...CGGAGGACGGCTGGGGGAGGGATGGAAACTGGACACGTGACATCCACAGCTGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR TCA 90 bp TTCAGAGTCATCAGGTATTCAACAAAGGACCAACCCAACATGTCACCCTCCCAGGCCGCTCGTGCTCAGTaGAGGCGATGCGGGACCACG +
Preference number: 4 (lower is better)
Translates to: FRVIRYSTKDQPNMSPSQAARAQ*RRCGTT
Trigger: CGTGGTCCCGCATCGCCTTCACTGAGCACGAGCGGC...CTGGGAGGGTGACATGTTGGGTTGGTCCTTTGTTGAATACCTGATGACTCTGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR TCA 90 bp TCCGCGGCTTCCAGGGAAAGGGGCAAAGTCTTTGGTCTCAAGGCTGTAGGACGCCGAAGGCCAAGTCTTTaGCAAAGAGCAGGTCCACGA +
Preference number: 4 (lower is better)
Translates to: SAASRERGKVFGLKAVGRRRPSL*QRAGPR
Trigger: TCGTGGACCTGCTCTTTGTCAAAGACTTGGCCTTCG...GCGTCCTACAGCCTTGAGACCAAAGACTTTGCCCCTTTCCCTGGAAGCCGCGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR GCA 90 bp CTAGGTACCGGTAGCAGGTCACTCAGCTCCTTTAAAAGCTACTCTCAACGACCCAGCACAGCAGGTAGTTaGCCTGCCTGCGCACCGGCT +
Preference number: 4 (lower is better)
Translates to: LGTGSRSLSSFKSYSQRPSTAGS*PACAPA
Trigger: AGCCGGTGCGCAGGCAGGGCAACTACCTGCTGTGCT...GGGTCGTTGAGAGTAGCTTTTAAAGGAGCTGAGTGACCTGCTACCGGTACCTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR GCA 90 bp TCCAGGGAAAGGGGCAAAGTCTTTGGTCTCAAGGCTGTAGGACGCAGCATGGCACCCGGTTATAGACCGTaGCTATCTCCTGGCCCAGGA +
Preference number: 4 (lower is better)
Translates to: SRERGKVFGLKAVGRSMAPGYRP*LSPGPG
Trigger: TCCTGGGCCAGGAGATAGGCACGGTCTATAACCGGG...TGCCATGCTGCGTCCTACAGCCTTGAGACCAAAGACTTTGCCCCTTTCCCTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR GCA 90 bp CCCAGCTGTGGATGTCACGTGTCCAGTTTCCATCCCTCCCCCAGCCGTCCTCCGATCTCGCTGTCCGTCTaGTTAAAGGCAGAGAAATCT +
Preference number: 4 (lower is better)
Translates to: PSCGCHVSSFHPSPSRPPISLSV*LKAEKS
Trigger: AGATTTCTCTGCCTTTAAGCAGACGGACAGCGAGAT...CGGAGGACGGCTGGGGGAGGGATGGAAACTGGACACGTGACATCCACAGCTGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR GCA 90 bp TCCAGGGAAAGGGGCAAAGTCTTTGGTCTCAAGGCTGTAGGACGCAGCATGGCAATGGCGCCTTCACTGTaGAGGCTGTGGTTGGCCTTG +
Preference number: 4 (lower is better)
Translates to: SRERGKVFGLKAVGRSMAMAPSL*RLWLAL
Trigger: CAAGGCCAACCACAGCCTGCACAGTGAAGGCGCCAT...TGCCATGCTGCGTCCTACAGCCTTGAGACCAAAGACTTTGCCCCTTTCCCTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CCA 90 bp TCCAGGGAAAGGGGCAAAGTCTTTGGTCTCAAGGCTGTAGGACGCAGCATGGCAGTTGGCCGTCTCATCTaGCAAGCCGTCATGCAGCTC +
Preference number: 4 (lower is better)
Translates to: SRERGKVFGLKAVGRSMAVGRLI*QAVMQL
Trigger: GAGCTGCATGACGGCTTGCCAGATGAGACGGCCAAC...TGCCATGCTGCGTCCTACAGCCTTGAGACCAAAGACTTTGCCCCTTTCCCTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR TCA 90 bp AGGGGCAAAGTCTTTGGTCTCAAGGCTGTAGGACGCAGCATGGCAGACAAGCTCGAGCACCCCCTTCCATaGACGACACGTCGTTCGTAT +
Preference number: 4 (lower is better)
Translates to: RGKVFGLKAVGRSMADKLEHPLP*TTRRSY
Trigger: ATACGAACGACGTGTCGTTCATGGAAGGGGGTGCTC...GAGCTTGTCTGCCATGCTGCGTCCTACAGCCTTGAGACCAAAGACTTTGCCCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR TCA 90 bp GCCGTCCTCCGCGGCTTCCAGGGAAAGGGGCAAAGTCTTTGGTCTCAAGGCTGTCCAACTTGGTGTCGTTaGAAACGAAGTGCAAAGGGT +
Preference number: 4 (lower is better)
Translates to: AVLRGFQGKGQSLWSQGCPTWCR*KRSAKG
Trigger: ACCCTTTGCACTTCGTTTTCAACGACACCAAGTTGG...ACAGCCTTGAGACCAAAGACTTTGCCCCTTTCCCTGGAAGCCGCGGAGGACGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR TCA 90 bp CATGCCCCAGCTGTGGATGTCACGTGTCCAGTTTCCATCCCTCCCCCAGCCGTCCAGGAGAAGCTGCGGTaGTATTTTAACCTTCATCTC +
Preference number: 4 (lower is better)
Translates to: HAPAVDVTCPVSIPPPAVQEKLR*YFNLHL
Trigger: GAGATGAAGGTTAAAATATCACCGCAGCTTCTCCTG...GACGGCTGGGGGAGGGATGGAAACTGGACACGTGACATCCACAGCTGGGGCATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR TCA 90 bp TCCGCGGCTTCCAGGGAAAGGGGCAAAGTCTTTGGTCTCAAGGCTGTAGGACGCGCTGTCTGGAGATCTTaGCGAACTGTAGGTCAGAGA +
Preference number: 4 (lower is better)
Translates to: SAASRERGKVFGLKAVGRAVWRS*RTVGQR
Trigger: TCTCTGACCTACAGTTCGTCAAGATCTCCAGACAGC...GCGTCCTACAGCCTTGAGACCAAAGACTTTGCCCCTTTCCCTGGAAGCCGCGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR GCA 90 bp ATGCCCCAGCTGTGGATGTCACGTGTCCAGTTTCCATCCCTCCCCCAGCCGTCCATCTCGCTGTCCGTCTaGTTAAAGGCAGAGAAATCT +
Preference number: 4 (lower is better)
Translates to: MPQLWMSRVQFPSLPQPSISLSV*LKAEKS
Trigger: AGATTTCTCTGCCTTTAAGCAGACGGACAGCGAGAT...GGACGGCTGGGGGAGGGATGGAAACTGGACACGTGACATCCACAGCTGGGGCAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR GCA 90 bp ATGCCCCAGCTGTGGATGTCACGTGTCCAGTTTCCATCCCTCCCCCAGCCGTCCATGGCCAGGAGAAGCTaGGGTGATATTTTAACCTTC +
Preference number: 4 (lower is better)
Translates to: MPQLWMSRVQFPSLPQPSMARRS*GDILTF
Trigger: GAAGGTTAAAATATCACCGCAGCTTCTCCTGGCCAT...GGACGGCTGGGGGAGGGATGGAAACTGGACACGTGACATCCACAGCTGGGGCAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR GCA 90 bp GCAATGGCCACATCCGAAGCAGGGCCACCTTTGAACAGGGCCACTGCTGAACTCTCTGGCAAGCCGTCATaGAGCTCCGTAAGAGTCAAT +
Preference number: 4 (lower is better)
Translates to: AMATSEAGPPLNRATAELSGKPS*SSVRVN
Trigger: ATTGACTCTTACGGAGCTGCATGACGGCTTGCCAGA...GAGTTCAGCAGTGGCCCTGTTCAAAGGTGGCCCTGCTTCGGATGTGGCCATTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR CCA 90 bp TGTCTCCGAATTCTTGAAAGCCATGCCCCAGCTGTGGATGTCACGTGTCCAGTTCGTGGTAAATCCAGGTaGTCTCGGCCCACGGAGGAG +
Preference number: 4 (lower is better)
Translates to: CLRILESHAPAVDVTCPVRGKSR*SRPTEE
Trigger: CTCCTCCGTGGGCCGAGACCACCTGGATTTACCACG...AACTGGACACGTGACATCCACAGCTGGGGCATGGCTTTCAAGAATTCGGAGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CCA 90 bp AGCCGTCCTCCGCGGCTTCCAGGGAAAGGGGCAAAGTCTTTGGTCTCAAGGCTGTCGTACTTCAGCTCCTaGATGACATTGGGGTGCTTT +
Preference number: 4 (lower is better)
Translates to: SRPPRLPGKGAKSLVSRLSYFSS*MTLGCF
Trigger: AAAGCACCCCAATGTCATCCAGGAGCTGAAGTACGA...CAGCCTTGAGACCAAAGACTTTGCCCCTTTCCCTGGAAGCCGCGGAGGACGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CCA 90 bp GAATTCTTGAAAGCCATGCCCCAGCTGTGGATGTCACGTGTCCAGTTTCCATCCCCAAGGTTGGCGTCATaGCGTCAATCCGGTCGCTCC +
Preference number: 4 (lower is better)
Translates to: EFLKAMPQLWMSRVQFPSPRLAS*RQSGRS
Trigger: GGAGCGACCGGATTGACGCCATGACGCCAACCTTGG...GGATGGAAACTGGACACGTGACATCCACAGCTGGGGCATGGCTTTCAAGAATTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CCA 90 bp ATTCAACAAAGGACCAACCCAACATGTCACCCTCCCAGAGTCCATCCTGGGGTTCCAAGGTTGGCGTCATaGCGTCAATCCGGTCGCTCC +
Preference number: 4 (lower is better)
Translates to: IQQRTNPTCHPPRVHPGVPRLAS*RQSGRS
Trigger: GGAGCGACCGGATTGACGCCATGACGCCAACCTTGG...AACCCCAGGATGGACTCTGGGAGGGTGACATGTTGGGTTGGTCCTTTGTTGAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR CCA 90 bp ATTCAACAAAGGACCAACCCAACATGTCACCCTCCCAGAGTCCATCCTGGGGTTGCTGCTCCCCAAGGTTaGCGTCATGGCGTCAATCCG +
Preference number: 4 (lower is better)
Translates to: IQQRTNPTCHPPRVHPGVAAPQG*RHGVNP
Trigger: CGGATTGACGCCATGACGCCAACCTTGGGGAGCAGC...AACCCCAGGATGGACTCTGGGAGGGTGACATGTTGGGTTGGTCCTTTGTTGAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR TCA 90 bp AGGGGCAAAGTCTTTGGTCTCAAGGCTGTAGGACGCAGCATGGCAGACAAGCTCCCTTCCCCTGAAGAATaGGGACGAAGTAGTCTACGG +
Preference number: 4 (lower is better)
Translates to: RGKVFGLKAVGRSMADKLPSPEE*GRSSLR
Trigger: CCGTAGACTACTTCGTCCTCATTCTTCAGGGGAAGG...GAGCTTGTCTGCCATGCTGCGTCCTACAGCCTTGAGACCAAAGACTTTGCCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR GCA 90 bp CTAGGTACCGGTAGCAGGTCACTCAGCTCCTTTAAAAGCTACTCTCAACGACCCCGCAGTTTTGCACGATaGGCAGCTCCATCGGGTCCA +
Preference number: 4 (lower is better)
Translates to: LGTGSRSLSSFKSYSQRPRSFAR*AAPSGP
Trigger: TGGACCCGATGGAGCTGCGCATCGTGCAAAACTGCG...GGGTCGTTGAGAGTAGCTTTTAAAGGAGCTGAGTGACCTGCTACCGGTACCTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR CCA 90 bp CATGCCCCAGCTGTGGATGTCACGTGTCCAGTTTCCATCCCTCCCCCAGCCGTCCAGAACTTCATAAAATaGGTCCCCTTCACCCTCATT +
Preference number: 4 (lower is better)
Translates to: HAPAVDVTCPVSIPPPAVQNFIK*VPFTLI
Trigger: AATGAGGGTGAAGGGGACCCATTTTATGAAGTTCTG...GACGGCTGGGGGAGGGATGGAAACTGGACACGTGACATCCACAGCTGGGGCATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR TCA 90 bp GCCGTCCTCCGCGGCTTCCAGGGAAAGGGGCAAAGTCTTTGGTCTCAAGGCTGTAGTATTTTCACTGTCTaGAGACTGAGGCGTTTTGTC +
Preference number: 4 (lower is better)
Translates to: AVLRGFQGKGQSLWSQGCSIFTV*RLRRFV
Trigger: GACAAAACGCCTCAGTCTTCAGACAGTGAAAATACT...ACAGCCTTGAGACCAAAGACTTTGCCCCTTTCCCTGGAAGCCGCGGAGGACGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR GCA 90 bp ATTCAACAAAGGACCAACCCAACATGTCACCCTCCCAGAGTCCATCCTGGGGTTGTTGCTAGGAAACGGTaGATGGCCAGGAGAAGCTGC +
Preference number: 4 (lower is better)
Translates to: IQQRTNPTCHPPRVHPGVVARKR*MARRSC
Trigger: GCAGCTTCTCCTGGCCATGCACCGTTTCCTAGCAAC...AACCCCAGGATGGACTCTGGGAGGGTGACATGTTGGGTTGGTCCTTTGTTGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR CCA 90 bp GTGCTTCTCTTCCAGAGGCTCCTTCCTGGGGCAAGGCTGTCTGAGGCAGAGGTGTGCACAATGGCCAGGTaGGATTTCCCTTTCTTAAAT +
Preference number: 4 (lower is better)
Translates to: VLLFQRLLPGARLSEAEVCTMAR*DFPFLN
Trigger: ATTTAAGAAAGGGAAATCCCACCTGGCCATTGTGCA...CACCTCTGCCTCAGACAGCCTTGCCCCAGGAAGGAGCCTCTGGAAGAGAAGCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR CAA 72 bp GAACTCCACAGCCCAGGGACAACATGGGAGGGGCACTaGGCTCTATGGAAGGAAGGGCATTTCATTAGAAAC +
Preference number: 4 (lower is better)
Translates to: ELHSPGTTWEGH*ALWKEGHFIRN
Trigger: GTTTCTAATGAAATGCCCTTCCTTCCATAGAGCCAAGTGCCCCTCCCATGTTGTCCCTGGGCTGTGGAGTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR TCA 90 bp GCACGCGCACACGCACACGCACAGAGTTTTCAGAGTCATCAGGTATTCAACAAAACCACGTCTCGTTGTTaGTGTTCTGCCCGTACACCC +
Preference number: 4 (lower is better)
Translates to: ARAHAHAQSFQSHQVFNKTTSRC*CSARTP
Trigger: GGGTGTACGGGCAGAACATCAACAACGAGACGTGGT...TTTGTTGAATACCTGATGACTCTGAAAACTCTGTGCGTGTGCGTGTGCGCGTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR TCA 90 bp GAATTCTTGAAAGCCATGCCCCAGCTGTGGATGTCACGTGTCCAGTTTCCATCCACAGCAGCAGCGAGATaGAGATCACTTGCAGCCAGA +
Preference number: 4 (lower is better)
Translates to: EFLKAMPQLWMSRVQFPSTAAAR*RSLAAR
Trigger: TCTGGCTGCAAGTGATCTTCATCTCGCTGCTGCTGT...GGATGGAAACTGGACACGTGACATCCACAGCTGGGGCATGGCTTTCAAGAATTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR TCA 90 bp TGTCTCCGAATTCTTGAAAGCCATGCCCCAGCTGTGGATGTCACGTGTCCAGTTACAGCAGCAGCGAGATaGAGATCACTTGCAGCCAGA +
Preference number: 4 (lower is better)
Translates to: CLRILESHAPAVDVTCPVTAAAR*RSLAAR
Trigger: TCTGGCTGCAAGTGATCTTCATCTCGCTGCTGCTGT...AACTGGACACGTGACATCCACAGCTGGGGCATGGCTTTCAAGAATTCGGAGACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR TCA 90 bp TCCAGGGAAAGGGGCAAAGTCTTTGGTCTCAAGGCTGTAGGACGCAGCATGGCACACAGTTCTGTTCATTaGGCAAGTTGGCCGTCTCAT +
Preference number: 4 (lower is better)
Translates to: SRERGKVFGLKAVGRSMAHSSVH*ASWPSH
Trigger: ATGAGACGGCCAACTTGCTCAATGAACAGAACTGTG...TGCCATGCTGCGTCCTACAGCCTTGAGACCAAAGACTTTGCCCCTTTCCCTGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR GCA 90 bp ATAAACATGATTCTATTTGGGTGGAAGAAGTTTGTCTCCGAATTCTTGAAAGCCGGGCAGTGCGGCGGCTaGCTGCCCGCCCGCCATCTT +
Preference number: 4 (lower is better)
Translates to: INMILFGWKKFVSEFLKAGQCGG*LPARHL
Trigger: AAGATGGCGGGCGGGCAGGCAGCCGCCGCACTGCCC...GGCTTTCAAGAATTCGGAGACAAACTTCTTCCACCCAAATAGAATCATGTTTAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR GCA 90 bp TGTCTCCGAATTCTTGAAAGCCATGCCCCAGCTGTGGATGTCACGTGTCCAGTTTCGTTGTTGATGTTCTaGCCGTACACCCGCAGCTTG +
Preference number: 4 (lower is better)
Translates to: CLRILESHAPAVDVTCPVSLLMF*PYTRSL
Trigger: CAAGCTGCGGGTGTACGGGCAGAACATCAACAACGA...AACTGGACACGTGACATCCACAGCTGGGGCATGGCTTTCAAGAATTCGGAGACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CCA 90 bp CTGCCAGCAAATGCAAGGAAGGAACCTTTTAAAAGAAGCCACCCAAGCAGTACCCGGGAGCAGATGGCTTaGGGCACGATTTCTCCGAAG +
Preference number: 4 (lower is better)
Translates to: LPANARKEPFKRSHPSSTREQMA*GTISPK
Trigger: CTTCGGAGAAATCGTGCCCCAAGCCATCTGCTCCCG...GGTACTGCTTGGGTGGCTTCTTTTAAAAGGTTCCTTCCTTGCATTTGCTGGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR CCA 90 bp GAATCGATTTGGGGTCAAACTGACTCTGGCTGTATGGGTGGCTCTCTGGCAATGAAGGAAGAGCTGAGCTaGTTGTTGCTGCTCCCCAAG +
Preference number: 4 (lower is better)
Translates to: ESIWGQTDSGCMGGSLAMKEELS*LLLLPK
Trigger: CTTGGGGAGCAGCAACAACCAGCTCAGCTCTTCCTT...CATTGCCAGAGAGCCACCCATACAGCCAGAGTCAGTTTGACCCCAAATCGATTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR CCA 90 bp CTGCCAGCAAATGCAAGGAAGGAACCTTTTAAAAGAAGCCACCCAAGCAGTACCGTTGGCCGTCTCATCTaGCAAGCCGTCATGCAGCTC +
Preference number: 4 (lower is better)
Translates to: LPANARKEPFKRSHPSSTVGRLI*QAVMQL
Trigger: GAGCTGCATGACGGCTTGCCAGATGAGACGGCCAAC...GGTACTGCTTGGGTGGCTTCTTTTAAAAGGTTCCTTCCTTGCATTTGCTGGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR TCA 90 bp AATCGATTTGGGGTCAAACTGACTCTGGCTGTATGGGTGGCTCTCTGGCAATGGTCACTGTCTGAAGACTaGGGCGTTTTGTCCATCCGA +
Preference number: 4 (lower is better)
Translates to: NRFGVKLTLAVWVALWQWSLSED*GVLSIR
Trigger: TCGGATGGACAAAACGCCTCAGTCTTCAGACAGTGA...CCATTGCCAGAGAGCCACCCATACAGCCAGAGTCAGTTTGACCCCAAATCGATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR TCA 90 bp AGGGGCAAAGTCTTTGGTCTCAAGGCTGTAGGACGCAGCATGGCAGACAAGCTCGTTGGCCTTGTTGTGTaGCACACAGTTCTGTTCATT +
Preference number: 4 (lower is better)
Translates to: RGKVFGLKAVGRSMADKLVGLVV*HTVLFI
Trigger: AATGAACAGAACTGTGTGTCACACAACAAGGCCAAC...GAGCTTGTCTGCCATGCTGCGTCCTACAGCCTTGAGACCAAAGACTTTGCCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR TCA 90 bp TTCAGAGTCATCAGGTATTCAACAAAGGACCAACCCAACATGTCACCCTCCCAGCCTTCCCCTGAAGAATaGGGACGAAGTAGTCTACGG +
Preference number: 4 (lower is better)
Translates to: FRVIRYSTKDQPNMSPSQPSPEE*GRSSLR
Trigger: CCGTAGACTACTTCGTCCTCATTCTTCAGGGGAAGG...CTGGGAGGGTGACATGTTGGGTTGGTCCTTTGTTGAATACCTGATGACTCTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR TCA 90 bp CACCAGAGGTTACAGGAATGGGGGATGAAGTCATTGCCTCCTGCCAATGATAAAAGAGAGGGCTCGTACTaGGTAGTCAGGGATGTAGAC +
Preference number: 4 (lower is better)
Translates to: HQRLQEWGMKSLPPANDKREGSY*VVRDVD
Trigger: GTCTACATCCCTGACTACTCAGTACGAGCCCTCTCT...TTTATCATTGGCAGGAGGCAATGACTTCATCCCCCATTCCTGTAACCTCTGGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR CCA 90 bp TCCAGGGAAAGGGGCAAAGTCTTTGGTCTCAAGGCTGTAGGACGCAGCATGGCACGATTGAGAATGATGTaGGGCAAGATGATGATGTCT +
Preference number: 4 (lower is better)
Translates to: SRERGKVFGLKAVGRSMARLRMM*GKMMMS
Trigger: AGACATCATCATCTTGCCCCACATCATTCTCAATCG...TGCCATGCTGCGTCCTACAGCCTTGAGACCAAAGACTTTGCCCCTTTCCCTGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CCA 90 bp AACAGTAAAACTCAGAGAGGCCCAAGGTGCTTCTCTTCCAGAGGCTCCTTCCTGTCGTACTTCAGCTCCTaGATGACATTGGGGTGCTTT +
Preference number: 4 (lower is better)
Translates to: NSKTQRGPRCFSSRGSFLSYFSS*MTLGCF
Trigger: AAAGCACCCCAATGTCATCCAGGAGCTGAAGTACGA...CAGGAAGGAGCCTCTGGAAGAGAAGCACCTTGGGCCTCTCTGAGTTTTACTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR GCA 90 bp CATGAAATGGCCACAACACACATTTGGTTTCTGAATCGATTTGGGGTCAAACTGCCCGGTTATAGACCGTaGCTATCTCCTGGCCCAGGA +
Preference number: 4 (lower is better)
Translates to: HEMATTHIWFLNRFGVKLPGYRP*LSPGPG
Trigger: TCCTGGGCCAGGAGATAGGCACGGTCTATAACCGGG...CAGTTTGACCCCAAATCGATTCAGAAACCAAATGTGTGTTGTGGCCATTTCATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR GCA 90 bp ATAAACATGATTCTATTTGGGTGGAAGAAGTTTGTCTCCGAATTCTTGAAAGCCCCTCCACCGTCTTGGTaGGGAGCTCCAGCGCCCCTT +
Preference number: 4 (lower is better)
Translates to: INMILFGWKKFVSEFLKAPPPSW*GAPAPL
Trigger: AAGGGGCGCTGGAGCTCCGCACCAAGACGGTGGAGG...GGCTTTCAAGAATTCGGAGACAAACTTCTTCCACCCAAATAGAATCATGTTTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CCA 90 bp CTAGGTACCGGTAGCAGGTCACTCAGCTCCTTTAAAAGCTACTCTCAACGACCCGCCATCAAGGCATTTTaGTATTGCTGTCTGGAGATC +
Preference number: 4 (lower is better)
Translates to: LGTGSRSLSSFKSYSQRPAIKAF*YCCLEI
Trigger: GATCTCCAGACAGCAATACCAAAATGCCTTGATGGC...GGGTCGTTGAGAGTAGCTTTTAAAGGAGCTGAGTGACCTGCTACCGGTACCTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
3UTR CAA 72 bp ACATGTTCATTAAGAAGCCCCATGGAAGGTTTCCACTaGGCACCTGTAGCAGCAGCTTGGGTTAGCAAGAGT +
Preference number: 4 (lower is better)
Translates to: TCSLRSPMEGFH*APVAAAWVSKS
Trigger: ACTCTTGCTAACCCAAGCTGCTGCTACAGGTGCCAAGTGGAAACCTTCCATGGGGCTTCTTAATGAACATGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR TCA 90 bp CACCAGAGGTTACAGGAATGGGGGATGAAGTCATTGCCTCCTGCCAATGATAAACCAACTTGGTGTCGTTaGAAACGAAGTGCAAAGGGT +
Preference number: 4 (lower is better)
Translates to: HQRLQEWGMKSLPPANDKPTWCR*KRSAKG
Trigger: ACCCTTTGCACTTCGTTTTCAACGACACCAAGTTGG...TTTATCATTGGCAGGAGGCAATGACTTCATCCCCCATTCCTGTAACCTCTGGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR TCA 90 bp GCACGCGCACACGCACACGCACAGAGTTTTCAGAGTCATCAGGTATTCAACAAAGTTGGCCTTGTTGTGTaGCACACAGTTCTGTTCATT +
Preference number: 4 (lower is better)
Translates to: ARAHAHAQSFQSHQVFNKVGLVV*HTVLFI
Trigger: AATGAACAGAACTGTGTGTCACACAACAAGGCCAAC...TTTGTTGAATACCTGATGACTCTGAAAACTCTGTGCGTGTGCGTGTGCGCGTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR GCA 90 bp GAATCGATTTGGGGTCAAACTGACTCTGGCTGTATGGGTGGCTCTCTGGCAATGACAGGTAATAAGACTTaGTCTTCTCCATCTTGCGCA +
Preference number: 4 (lower is better)
Translates to: ESIWGQTDSGCMGGSLAMTGNKT*SSPSCA
Trigger: TGCGCAAGATGGAGAAGAGCAAGTCTTATTACCTGT...CATTGCCAGAGAGCCACCCATACAGCCAGAGTCAGTTTGACCCCAAATCGATTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR GCA 90 bp TTCAGAGTCATCAGGTATTCAACAAAGGACCAACCCAACATGTCACCCTCCCAGAAGGCAGAGAAATCTTaGTTTCTTTCACGGTGGGCC +
Preference number: 4 (lower is better)
Translates to: FRVIRYSTKDQPNMSPSQKAEKS*FLSRWA
Trigger: GGCCCACCGTGAAAGAAAGCAAGATTTCTCTGCCTT...CTGGGAGGGTGACATGTTGGGTTGGTCCTTTGTTGAATACCTGATGACTCTGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR GCA 90 bp TGTCTCCGAATTCTTGAAAGCCATGCCCCAGCTGTGGATGTCACGTGTCCAGTTAAGGCATTTTGGTATTaGTGTCTGGAGATCTTGACG +
Preference number: 4 (lower is better)
Translates to: CLRILESHAPAVDVTCPVKAFWY*CLEILT
Trigger: CGTCAAGATCTCCAGACAGCAATACCAAAATGCCTT...AACTGGACACGTGACATCCACAGCTGGGGCATGGCTTTCAAGAATTCGGAGACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CCA 90 bp CACCAGAGGTTACAGGAATGGGGGATGAAGTCATTGCCTCCTGCCAATGATAAACCGGCTCGATGCGCTTaGCATAATTCTTCTCTTTCT +
Preference number: 4 (lower is better)
Translates to: HQRLQEWGMKSLPPANDKPARCA*HNSSLS
Trigger: AGAAAGAGAAGAATTATGCCAAGCGCATCGAGCCGG...TTTATCATTGGCAGGAGGCAATGACTTCATCCCCCATTCCTGTAACCTCTGGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR CCA 90 bp ATAAACATGATTCTATTTGGGTGGAAGAAGTTTGTCTCCGAATTCTTGAAAGCCACCGTGCCTATCTCCTaGCCCAGGACGCAGTCCAGC +
Preference number: 4 (lower is better)
Translates to: INMILFGWKKFVSEFLKATVPIS*PRTQSS
Trigger: GCTGGACTGCGTCCTGGGCCAGGAGATAGGCACGGT...GGCTTTCAAGAATTCGGAGACAAACTTCTTCCACCCAAATAGAATCATGTTTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CCA 90 bp GAATTCTTGAAAGCCATGCCCCAGCTGTGGATGTCACGTGTCCAGTTTCCATCCTGCACAATGGCCAGGTaGGATTTCCCTTTCTTAAAT +
Preference number: 4 (lower is better)
Translates to: EFLKAMPQLWMSRVQFPSCTMAR*DFPFLN
Trigger: ATTTAAGAAAGGGAAATCCCACCTGGCCATTGTGCA...GGATGGAAACTGGACACGTGACATCCACAGCTGGGGCATGGCTTTCAAGAATTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CCA 90 bp ATTCAACAAAGGACCAACCCAACATGTCACCCTCCCAGAGTCCATCCTGGGGTTCAGAACTTCATAAAATaGGTCCCCTTCACCCTCATT +
Preference number: 4 (lower is better)
Translates to: IQQRTNPTCHPPRVHPGVQNFIK*VPFTLI
Trigger: AATGAGGGTGAAGGGGACCCATTTTATGAAGTTCTG...AACCCCAGGATGGACTCTGGGAGGGTGACATGTTGGGTTGGTCCTTTGTTGAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR TCA 90 bp AATAAACATGATTCTATTTGGGTGGAAGAAGTTTGTCTCCGAATTCTTGAAAGCCCAGCCGCAGCCCGATaGTCACGGTCTCCTCGTTCT +
Preference number: 4 (lower is better)
Translates to: NKHDSIWVEEVCLRILESPAAAR*SRSPRS
Trigger: AGAACGAGGAGACCGTGATCATCGGGCTGCGGCTGG...GCTTTCAAGAATTCGGAGACAAACTTCTTCCACCCAAATAGAATCATGTTTATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CCA 90 bp GCACGCGCACACGCACACGCACAGAGTTTTCAGAGTCATCAGGTATTCAACAAACGATTGAGAATGATGTaGGGCAAGATGATGATGTCT +
Preference number: 4 (lower is better)
Translates to: ARAHAHAQSFQSHQVFNKRLRMM*GKMMMS
Trigger: AGACATCATCATCTTGCCCCACATCATTCTCAATCG...TTTGTTGAATACCTGATGACTCTGAAAACTCTGTGCGTGTGCGTGTGCGCGTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR CCA 90 bp ATAAACATGATTCTATTTGGGTGGAAGAAGTTTGTCTCCGAATTCTTGAAAGCCCGTGGTAAATCCAGGTaGTCTCGGCCCACGGAGGAG +
Preference number: 4 (lower is better)
Translates to: INMILFGWKKFVSEFLKARGKSR*SRPTEE
Trigger: CTCCTCCGTGGGCCGAGACCACCTGGATTTACCACG...GGCTTTCAAGAATTCGGAGACAAACTTCTTCCACCCAAATAGAATCATGTTTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
3UTR CAA 72 bp ATTCTATTTGGGTGGAAGAAGTTTGTCTCCGAATTCTaGAAAGCCATGCCCCAGCTGTGGATGTCACGTGTC +
Preference number: 4 (lower is better)
Translates to: ILFGWKKFVSEF*KAMPQLWMSRV
Trigger: GACACGTGACATCCACAGCTGGGGCATGGCTTTCAAGAATTCGGAGACAAACTTCTTCCACCCAAATAGAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR TCA 90 bp CACACGCACAGAGTTTTCAGAGTCATCAGGTATTCAACAAAGGACCAACCCAACCAGGAGAAGCTGCGGTaGTATTTTAACCTTCATCTC +
Preference number: 4 (lower is better)
Translates to: HTHRVFRVIRYSTKDQPNQEKLR*YFNLHL
Trigger: GAGATGAAGGTTAAAATATCACCGCAGCTTCTCCTG...GTTGGGTTGGTCCTTTGTTGAATACCTGATGACTCTGAAAACTCTGTGCGTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR TCA 90 bp GACAGACTTGGCACGTTCTGCAGTGACATGATTTTTCTTCATTCATCCATCAAGGCTGTCTGGAGATCTTaGCGAACTGTAGGTCAGAGA +
Preference number: 4 (lower is better)
Translates to: DRLGTFCSDMIFLHSSIKAVWRS*RTVGQR
Trigger: TCTCTGACCTACAGTTCGTCAAGATCTCCAGACAGC...CTTGATGGATGAATGAAGAAAAATCATGTCACTGCAGAACGTGCCAAGTCTGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR GCA 90 bp CTGGCCCTGGCCACACTCAGAGAGCTTACATCTGAACATAATATGCTCCTTATTATGGCCAGGAGAAGCTaGGGTGATATTTTAACCTTC +
Preference number: 4 (lower is better)
Translates to: LALATLRELTSEHNMLLIMARRS*GDILTF
Trigger: GAAGGTTAAAATATCACCGCAGCTTCTCCTGGCCAT...AATAAGGAGCATATTATGTTCAGATGTAAGCTCTCTGAGTGTGGCCAGGGCCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR TCA 90 bp ATAAACATGATTCTATTTGGGTGGAAGAAGTTTGTCTCCGAATTCTTGAAAGCCGAGCACCCCCTTCCATaGACGACACGTCGTTCGTAT +
Preference number: 4 (lower is better)
Translates to: INMILFGWKKFVSEFLKAEHPLP*TTRRSY
Trigger: ATACGAACGACGTGTCGTTCATGGAAGGGGGTGCTC...GGCTTTCAAGAATTCGGAGACAAACTTCTTCCACCCAAATAGAATCATGTTTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR TCA 90 bp AATAAACATGATTCTATTTGGGTGGAAGAAGTTTGTCTCCGAATTCTTGAAAGCCAAGATGATGATGTCTaGGGTGCGGATGCCGCAGCG +
Preference number: 4 (lower is better)
Translates to: NKHDSIWVEEVCLRILESQDDDV*GADAAA
Trigger: CGCTGCGGCATCCGCACCTCAGACATCATCATCTTG...GCTTTCAAGAATTCGGAGACAAACTTCTTCCACCCAAATAGAATCATGTTTATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR TCA 90 bp ATAAACATGATTCTATTTGGGTGGAAGAAGTTTGTCTCCGAATTCTTGAAAGCCCCGACTGAGAGAATCTaGGTGATTCAGGCCACAGGG +
Preference number: 4 (lower is better)
Translates to: INMILFGWKKFVSEFLKAPTERI*VIQATG
Trigger: CCCTGTGGCCTGAATCACTCAGATTCTCTCAGTCGG...GGCTTTCAAGAATTCGGAGACAAACTTCTTCCACCCAAATAGAATCATGTTTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CCA 90 bp AATAAACATGATTCTATTTGGGTGGAAGAAGTTTGTCTCCGAATTCTTGAAAGCCGGGAGCAGATGGCTTaGGGCACGATTTCTCCGAAG +
Preference number: 4 (lower is better)
Translates to: NKHDSIWVEEVCLRILESREQMA*GTISPK
Trigger: CTTCGGAGAAATCGTGCCCCAAGCCATCTGCTCCCG...GCTTTCAAGAATTCGGAGACAAACTTCTTCCACCCAAATAGAATCATGTTTATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CCA 90 bp AATAAACATGATTCTATTTGGGTGGAAGAAGTTTGTCTCCGAATTCTTGAAAGCCTAGGAAACGGTGCATaGCCAGGAGAAGCTGCGGTG +
Preference number: 4 (lower is better)
Translates to: NKHDSIWVEEVCLRILESLGNGA*PGEAAV
Trigger: CACCGCAGCTTCTCCTGGCCATGCACCGTTTCCTAG...GCTTTCAAGAATTCGGAGACAAACTTCTTCCACCCAAATAGAATCATGTTTATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR TCA 90 bp ATAAACATGATTCTATTTGGGTGGAAGAAGTTTGTCTCCGAATTCTTGAAAGCCAGAGAGGGCTCGTACTaGGTAGTCAGGGATGTAGAC +
Preference number: 4 (lower is better)
Translates to: INMILFGWKKFVSEFLKAREGSY*VVRDVD
Trigger: GTCTACATCCCTGACTACTCAGTACGAGCCCTCTCT...GGCTTTCAAGAATTCGGAGACAAACTTCTTCCACCCAAATAGAATCATGTTTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR GCA 90 bp AATAAACATGATTCTATTTGGGTGGAAGAAGTTTGTCTCCGAATTCTTGAAAGCGTTGCTAGGAAACGGTaGATGGCCAGGAGAAGCTGC +
Preference number: 4 (lower is better)
Translates to: NKHDSIWVEEVCLRILESVARKR*MARRSC
Trigger: GCAGCTTCTCCTGGCCATGCACCGTTTCCTAGCAAC...GCTTTCAAGAATTCGGAGACAAACTTCTTCCACCCAAATAGAATCATGTTTATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CCA 90 bp ATAAACATGATTCTATTTGGGTGGAAGAAGTTTGTCTCCGAATTCTTGAAAGCCAAGGAAGAGCTGAGCTaGTTGTTGCTGCTCCCCAAG +
Preference number: 4 (lower is better)
Translates to: INMILFGWKKFVSEFLKAKEELS*LLLLPK
Trigger: CTTGGGGAGCAGCAACAACCAGCTCAGCTCTTCCTT...GGCTTTCAAGAATTCGGAGACAAACTTCTTCCACCCAAATAGAATCATGTTTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR GCA 90 bp ATAAACATGATTCTATTTGGGTGGAAGAAGTTTGTCTCCGAATTCTTGAAAGCCTCTGGCAAGCCGTCATaGAGCTCCGTAAGAGTCAAT +
Preference number: 4 (lower is better)
Translates to: INMILFGWKKFVSEFLKASGKPS*SSVRVN
Trigger: ATTGACTCTTACGGAGCTGCATGACGGCTTGCCAGA...GGCTTTCAAGAATTCGGAGACAAACTTCTTCCACCCAAATAGAATCATGTTTAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR TCA 90 bp AATAAACATGATTCTATTTGGGTGGAAGAAGTTTGTCTCCGAATTCTTGAAAGCTCACTGTCTGAAGACTaGGGCGTTTTGTCCATCCGA +
Preference number: 4 (lower is better)
Translates to: NKHDSIWVEEVCLRILESSLSED*GVLSIR
Trigger: TCGGATGGACAAAACGCCTCAGTCTTCAGACAGTGA...GCTTTCAAGAATTCGGAGACAAACTTCTTCCACCCAAATAGAATCATGTTTATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR TCA 90 bp ATAAACATGATTCTATTTGGGTGGAAGAAGTTTGTCTCCGAATTCTTGAAAGCCCACAGTTCTGTTCATTaGGCAAGTTGGCCGTCTCAT +
Preference number: 4 (lower is better)
Translates to: INMILFGWKKFVSEFLKAHSSVH*ASWPSH
Trigger: ATGAGACGGCCAACTTGCTCAATGAACAGAACTGTG...GGCTTTCAAGAATTCGGAGACAAACTTCTTCCACCCAAATAGAATCATGTTTAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR GCA 90 bp AATAAACATGATTCTATTTGGGTGGAAGAAGTTTGTCTCCGAATTCTTGAAAGCTCATTGTTCACTCGCTaGACAATGGCCAGGTGGGAT +
Preference number: 4 (lower is better)
Translates to: NKHDSIWVEEVCLRILESSLFTR*TMARWD
Trigger: ATCCCACCTGGCCATTGTGCAGCGAGTGAACAATGA...GCTTTCAAGAATTCGGAGACAAACTTCTTCCACCCAAATAGAATCATGTTTATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR TCA 90 bp ATAAACATGATTCTATTTGGGTGGAAGAAGTTTGTCTCCGAATTCTTGAAAGCCAGTATTTTCACTGTCTaGAGACTGAGGCGTTTTGTC +
Preference number: 4 (lower is better)
Translates to: INMILFGWKKFVSEFLKASIFTV*RLRRFV
Trigger: GACAAAACGCCTCAGTCTTCAGACAGTGAAAATACT...GGCTTTCAAGAATTCGGAGACAAACTTCTTCCACCCAAATAGAATCATGTTTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR GCA 90 bp ATAAACATGATTCTATTTGGGTGGAAGAAGTTTGTCTCCGAATTCTTGAAAGCCACAGGTAATAAGACTTaGTCTTCTCCATCTTGCGCA +
Preference number: 4 (lower is better)
Translates to: INMILFGWKKFVSEFLKATGNKT*SSPSCA
Trigger: TGCGCAAGATGGAGAAGAGCAAGTCTTATTACCTGT...GGCTTTCAAGAATTCGGAGACAAACTTCTTCCACCCAAATAGAATCATGTTTAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CCA 90 bp AATAAACATGATTCTATTTGGGTGGAAGAAGTTTGTCTCCGAATTCTTGAAAGCGCCATCAAGGCATTTTaGTATTGCTGTCTGGAGATC +
Preference number: 4 (lower is better)
Translates to: NKHDSIWVEEVCLRILESAIKAF*YCCLEI
Trigger: GATCTCCAGACAGCAATACCAAAATGCCTTGATGGC...GCTTTCAAGAATTCGGAGACAAACTTCTTCCACCCAAATAGAATCATGTTTATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS GCA 90 bp CGGCCCACGGAGGAGGCGGGAGTCCGGCCACCCCCGCGCCACCCTTaGCCCCGACGGTGCCACTCGCAGACCCGGAGCCGCCGGCGCCTA +
Preference number: 5 (lower is better)
Translates to: RPTEEAGVRPPPRHP*PRRCHSQTRSRRRL
Trigger: TAGGCGCCGGCGGCTCCGGGTCTGCGAGTGGCACCGTCGGGGGCAAGGGTGGCGCGGGGGTGGCCGGACTCCCGCCTCCTCCGTGGGCCG
80% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS GCA 90 bp GCGGGCACTGAGGCTGCGGCGCGCCGCCATCTTCCAAGTGGGCAGTaGGGCGGCTGCCTGCCCGCCCGCCATCTTTACTTCGGGTTCACA +
Preference number: 5 (lower is better)
Translates to: AGTEAAARRHLPSGQ*GGCLPARHLYFGFT
Trigger: TGTGAACCCGAAGTAAAGATGGCGGGCGGGCAGGCAGCCGCCGCACTGCCCACTTGGAAGATGGCGGCGCGCCGCAGCCTCAGTGCCCGC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS GCA 90 bp CTGCGGCGCGCCGCCATCTTCCAAGTGGGCAGTGCGGCGGCTGCCTaGCCGCCCGCCATCTTTACTTCGGGTTCACAAGCGCCACAGCCA +
Preference number: 5 (lower is better)
Translates to: LRRAAIFQVGSAAAA*PPAIFTSGSQAPQP
Trigger: TGGCTGTGGCGCTTGTGAACCCGAAGTAAAGATGGCGGGCGGGCAGGCAGCCGCCGCACTGCCCACTTGGAAGATGGCGGCGCGCCGCAG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS GCA 90 bp GAGGCTGCGGCGCGCCGCCATCTTCCAAGTGGGCAGTGCGGCGGCTaGCTGCCCGCCCGCCATCTTTACTTCGGGTTCACAAGCGCCACA +
Preference number: 5 (lower is better)
Translates to: EAAARRHLPSGQCGG*LPARHLYFGFTSAT
Trigger: TGTGGCGCTTGTGAACCCGAAGTAAAGATGGCGGGCGGGCAGGCAGCCGCCGCACTGCCCACTTGGAAGATGGCGGCGCGCCGCAGCCTC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS CCA 90 bp CGCCCACTATCATCTTGGTGTCCTCACCGTCGTGGTAAATCCAGGTaGTCTCGGCCCACGGAGGAGGCGGGAGTCCGGCCACCCCCGCGC +
Preference number: 5 (lower is better)
Translates to: RPLSSWCPHRRGKSR*SRPTEEAGVRPPPR
Trigger: GCGCGGGGGTGGCCGGACTCCCGCCTCCTCCGTGGGCCGAGACCACCTGGATTTACCACGACGGTGAGGACACCAAGATGATAGTGGGCG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CAA 90 bp CAGCTGTGGATGTCACGTGTCCAGTTTCCATCCCTCCCCCAGCCGTCCTCCGCGCCGTACACCCGCAGCTaGACCCGGGTCCGCTCGCTC +
Preference number: 5 (lower is better)
Translates to: QLWMSRVQFPSLPQPSSAPYTRS*TRVRSL
Trigger: GAGCGAGCGGACCCGGGTCAAGCTGCGGGTGTACGG...CGCGGAGGACGGCTGGGGGAGGGATGGAAACTGGACACGTGACATCCACAGCTG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CAA 90 bp CATGCCCCAGCTGTGGATGTCACGTGTCCAGTTTCCATCCCTCCCCCAGCCGTCCCGTACACCCGCAGCTaGACCCGGGTCCGCTCGCTC +
Preference number: 5 (lower is better)
Translates to: HAPAVDVTCPVSIPPPAVPYTRS*TRVRSL
Trigger: GAGCGAGCGGACCCGGGTCAAGCTGCGGGTGTACGG...GACGGCTGGGGGAGGGATGGAAACTGGACACGTGACATCCACAGCTGGGGCATG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CAA 90 bp TCCGCGGCTTCCAGGGAAAGGGGCAAAGTCTTTGGTCTCAAGGCTGTAGGACGCACCCCCGCGCCACCCTaGCCCCCGACGGTGCCACTC +
Preference number: 5 (lower is better)
Translates to: SAASRERGKVFGLKAVGRTPAPP*PPTVPL
Trigger: GAGTGGCACCGTCGGGGGCAAGGGTGGCGCGGGGGT...GCGTCCTACAGCCTTGAGACCAAAGACTTTGCCCCTTTCCCTGGAAGCCGCGGA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CAA 90 bp GGATGTCACGTGTCCAGTTTCCATCCCTCCCCCAGCCGTCCTCCGCGGCTTCCAGCCATGAGCCCCAGGTaGAGGCCGCTGAACATGCCC +
Preference number: 5 (lower is better)
Translates to: GCHVSSFHPSPSRPPRLPAMSPR*RPLNMP
Trigger: GGGCATGTTCAGCGGCCTCAACCTGGGGCTCATGGC...TGGAAGCCGCGGAGGACGGCTGGGGGAGGGATGGAAACTGGACACGTGACATCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS TCA 90 bp CGATGTGCGGCGATTGAGAATGATGTGGGGCAAGATGATGATGTCTaGGGTGCGGATGCCGCAGCGCTGGGGGCCGCTGTCCGGCTCCGG +
Preference number: 5 (lower is better)
Translates to: RCAAIENDVGQDDDV*GADAAALGAAVRLR
Trigger: CCGGAGCCGGACAGCGGCCCCCAGCGCTGCGGCATCCGCACCTCAGACATCATCATCTTGCCCCACATCATTCTCAATCGCCGCACATCG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS GCA 90 bp TGCTCAGTGAAGGCGATGCGGGACCACGTCTCGTTGTTGATGTTCTaGCCGTACACCCGCAGCTTGACCCGGGTCCGCTCGCTCACCCGC +
Preference number: 5 (lower is better)
Translates to: CSVKAMRDHVSLLMF*PYTRSLTRVRSLTR
Trigger: GCGGGTGAGCGAGCGGACCCGGGTCAAGCTGCGGGTGTACGGGCAGAACATCAACAACGAGACGTGGTCCCGCATCGCCTTCACTGAGCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS CCA 90 bp CGGTGCCACTCGCAGACCCGGAGCCGCCGGCGCCTAGTGCGGGCGTaGAGAGAGACGTGCACAGGTAATAAGACTTGCTCTTCTCCATCT +
Preference number: 5 (lower is better)
Translates to: RCHSQTRSRRRLVRA*RETCTGNKTCSSPS
Trigger: AGATGGAGAAGAGCAAGTCTTATTACCTGTGCACGTCTCTCTCCACGCCCGCACTAGGCGCCGGCGGCTCCGGGTCTGCGAGTGGCACCG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS GCA 90 bp CAGACCCGGAGCCGCCGGCGCCTAGTGCGGGCGTGGAGAGAGACGTaGACAGGTAATAAGACTTGCTCTTCTCCATCTTGCGCAGCGGTT +
Preference number: 5 (lower is better)
Translates to: QTRSRRRLVRAWRET*TGNKTCSSPSCAAV
Trigger: AACCGCTGCGCAAGATGGAGAAGAGCAAGTCTTATTACCTGTGCACGTCTCTCTCCACGCCCGCACTAGGCGCCGGCGGCTCCGGGTCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CAA 90 bp CAGCTGTGGATGTCACGTGTCCAGTTTCCATCCCTCCCCCAGCCGTCCTCCGCGCGGGACCACGTCTCGTaGTTGATGTTCTGCCCGTAC +
Preference number: 5 (lower is better)
Translates to: QLWMSRVQFPSLPQPSSARDHVS*LMFCPY
Trigger: GTACGGGCAGAACATCAACAACGAGACGTGGTCCCG...CGCGGAGGACGGCTGGGGGAGGGATGGAAACTGGACACGTGACATCCACAGCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CAA 90 bp AAAGGTATCCCTCCTGGGGACGGCCAGGGAAGGCCGTTAAAGGGGCAAGTCCATGTGAGGAAGATGGTGTaGGCCCCTACCGCCAGGCCG +
Preference number: 5 (lower is better)
Translates to: KGIPPGDGQGRPLKGQVHVRKMV*APTARP
Trigger: CGGCCTGGCGGTAGGGGCCAACACCATCTTCCTCAC...ATGGACTTGCCCCTTTAACGGCCTTCCCTGGCCGTCCCCAGGAGGGATACCTTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR CAA 90 bp CCCAGCCGTCCTCCGCGGCTTCCAGGGAAAGGGGCAAAGTCTTTGGTCTCAAGGTGCTGCTCCCCAAGGTaGGCGTCATGGCGTCAATCC +
Preference number: 5 (lower is better)
Translates to: PSRPPRLPGKGAKSLVSRCCSPR*ASWRQS
Trigger: GGATTGACGCCATGACGCCAACCTTGGGGAGCAGCA...CCTTGAGACCAAAGACTTTGCCCCTTTCCCTGGAAGCCGCGGAGGACGGCTGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CAA 90 bp CCCAGCCGTCCTCCGCGGCTTCCAGGGAAAGGGGCAAAGTCTTTGGTCTCAAGGTCGGGAGCAGATGGCTaGGGGCACGATTTCTCCGAA +
Preference number: 5 (lower is better)
Translates to: PSRPPRLPGKGAKSLVSRSGADG*GHDFSE
Trigger: TTCGGAGAAATCGTGCCCCAAGCCATCTGCTCCCGA...CCTTGAGACCAAAGACTTTGCCCCTTTCCCTGGAAGCCGCGGAGGACGGCTGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS TCA 90 bp TGCTCCCCAAGGTTGGCGTCATGGCGTCAATCCGGTCGCTCCGACTaGGAGAATCTGAGTGATTCAGGCCACAGGGGCGAGGAGGTGACT +
Preference number: 5 (lower is better)
Translates to: CSPRLASWRQSGRSD*ENLSDSGHRGEEVT
Trigger: AGTCACCTCCTCGCCCCTGTGGCCTGAATCACTCAGATTCTCTCAGTCGGAGCGACCGGATTGACGCCATGACGCCAACCTTGGGGAGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CAA 90 bp CATGCCCCAGCTGTGGATGTCACGTGTCCAGTTTCCATCCCTCCCCCAGCCGTCGACCACGTCTCGTTGTaGATGTTCTGCCCGTACACC +
Preference number: 5 (lower is better)
Translates to: HAPAVDVTCPVSIPPPAVDHVSL*MFCPYT
Trigger: GGTGTACGGGCAGAACATCAACAACGAGACGTGGTC...GACGGCTGGGGGAGGGATGGAAACTGGACACGTGACATCCACAGCTGGGGCATG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CAA 90 bp GCCGTCCTCCGCGGCTTCCAGGGAAAGGGGCAAAGTCTTTGGTCTCAAGGCTGTCCCGATGTGCGGCGATaGAGAATGATGTGGGGCAAG +
Preference number: 5 (lower is better)
Translates to: AVLRGFQGKGQSLWSQGCPDVRR*RMMWGK
Trigger: CTTGCCCCACATCATTCTCAATCGCCGCACATCGGG...ACAGCCTTGAGACCAAAGACTTTGCCCCTTTCCCTGGAAGCCGCGGAGGACGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CAA 90 bp AGCCGTCCTCCGCGGCTTCCAGGGAAAGGGGCAAAGTCTTTGGTCTCAAGGCTGATGGTGAGCGTGGTGTaGACCAGTACGTTGCCCAGC +
Preference number: 5 (lower is better)
Translates to: SRPPRLPGKGAKSLVSRLMVSVV*TSTLPS
Trigger: GCTGGGCAACGTACTGGTCAACACCACGCTCACCAT...CAGCCTTGAGACCAAAGACTTTGCCCCTTTCCCTGGAAGCCGCGGAGGACGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS CCA 90 bp GCCAGAAGGGCAGCAAGAACTTCTTCTCCTCGCCCACTATCATCTTaGTGTCCTCACCGTCGTGGTAAATCCAGGTGGTCTCGGCCCACG +
Preference number: 5 (lower is better)
Translates to: ARRAARTSSPRPLSS*CPHRRGKSRWSRPT
Trigger: CGTGGGCCGAGACCACCTGGATTTACCACGACGGTGAGGACACCAAGATGATAGTGGGCGAGGAGAAGAAGTTCTTGCTGCCCTTCTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CAA 90 bp GAATTCTTGAAAGCCATGCCCCAGCTGTGGATGTCACGTGTCCAGTTTCCATCCGCCATGAGCCCCAGGTaGAGGCCGCTGAACATGCCC +
Preference number: 5 (lower is better)
Translates to: EFLKAMPQLWMSRVQFPSAMSPR*RPLNMP
Trigger: GGGCATGTTCAGCGGCCTCAACCTGGGGCTCATGGC...GGATGGAAACTGGACACGTGACATCCACAGCTGGGGCATGGCTTTCAAGAATTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CAA 90 bp CCCAGCTGTGGATGTCACGTGTCCAGTTTCCATCCCTCCCCCAGCCGTCCTCCGCGCCATCAAGGCATTTaGGTATTGCTGTCTGGAGAT +
Preference number: 5 (lower is better)
Translates to: PSCGCHVSSFHPSPSRPPRHQGI*VLLSGD
Trigger: ATCTCCAGACAGCAATACCAAAATGCCTTGATGGCG...CGGAGGACGGCTGGGGGAGGGATGGAAACTGGACACGTGACATCCACAGCTGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CAA 90 bp GGATGTCACGTGTCCAGTTTCCATCCCTCCCCCAGCCGTCCTCCGCGGCTTCCAACACAGTTCTGTTCATaGAGCAAGTTGGCCGTCTCA +
Preference number: 5 (lower is better)
Translates to: GCHVSSFHPSPSRPPRLPTQFCS*SKLAVS
Trigger: TGAGACGGCCAACTTGCTCAATGAACAGAACTGTGT...TGGAAGCCGCGGAGGACGGCTGGGGGAGGGATGGAAACTGGACACGTGACATCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS CCA 90 bp ATCTCGATCTCGATGATGCCCGATGTGCGGCGATTGAGAATGATGTaGGGCAAGATGATGATGTCTGAGGTGCGGATGCCGCAGCGCTGG +
Preference number: 5 (lower is better)
Translates to: ISISMMPDVRRLRMM*GKMMMSEVRMPQRW
Trigger: CCAGCGCTGCGGCATCCGCACCTCAGACATCATCATCTTGCCCCACATCATTCTCAATCGCCGCACATCGGGCATCATCGAGATCGAGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CAA 90 bp GACAGACTTGGCACGTTCTGCAGTGACATGATTTTTCTTCATTCATCCATCAAGACCCCCGCGCCACCCTaGCCCCCGACGGTGCCACTC +
Preference number: 5 (lower is better)
Translates to: DRLGTFCSDMIFLHSSIKTPAPP*PPTVPL
Trigger: GAGTGGCACCGTCGGGGGCAAGGGTGGCGCGGGGGT...CTTGATGGATGAATGAAGAAAAATCATGTCACTGCAGAACGTGCCAAGTCTGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR CAA 90 bp TCCAGGGAAAGGGGCAAAGTCTTTGGTCTCAAGGCTGTAGGACGCAGCATGGCAATGGTGAGCGTGGTGTaGACCAGTACGTTGCCCAGC +
Preference number: 5 (lower is better)
Translates to: SRERGKVFGLKAVGRSMAMVSVV*TSTLPS
Trigger: GCTGGGCAACGTACTGGTCAACACCACGCTCACCAT...TGCCATGCTGCGTCCTACAGCCTTGAGACCAAAGACTTTGCCCCTTTCCCTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CAA 90 bp CATGCCCCAGCTGTGGATGTCACGTGTCCAGTTTCCATCCCTCCCCCAGCCGTCAAAGGCAGAGAAATCTaGCTTTCTTTCACGGTGGGC +
Preference number: 5 (lower is better)
Translates to: HAPAVDVTCPVSIPPPAVKGREI*LSFTVG
Trigger: GCCCACCGTGAAAGAAAGCAAGATTTCTCTGCCTTT...GACGGCTGGGGGAGGGATGGAAACTGGACACGTGACATCCACAGCTGGGGCATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CAA 90 bp AGCCGTCCTCCGCGGCTTCCAGGGAAAGGGGCAAAGTCTTTGGTCTCAAGGCTGACGCTTCTACTTCTGTaGCTAGGAAACGGTGCATGG +
Preference number: 5 (lower is better)
Translates to: SRPPRLPGKGAKSLVSRLTLLLL*LGNGAW
Trigger: CCATGCACCGTTTCCTAGCAACAGAAGTAGAAGCGT...CAGCCTTGAGACCAAAGACTTTGCCCCTTTCCCTGGAAGCCGCGGAGGACGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CAA 90 bp TCCGCGGCTTCCAGGGAAAGGGGCAAAGTCTTTGGTCTCAAGGCTGTAGGACGCAGGCTGTGGTTGGCCTaGTTGTGTGACACACAGTTC +
Preference number: 5 (lower is better)
Translates to: SAASRERGKVFGLKAVGRRLWLA*LCDTQF
Trigger: GAACTGTGTGTCACACAACAAGGCCAACCACAGCCT...GCGTCCTACAGCCTTGAGACCAAAGACTTTGCCCCTTTCCCTGGAAGCCGCGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS TCA 90 bp GCAGGCTGTGGTTGGCCTTGTTGTGTGACACACAGTTCTGTTCATTaGGCAAGTTGGCCGTCTCATCTGGCAAGCCGTCATGCAGCTCCG +
Preference number: 5 (lower is better)
Translates to: AGCGWPCCVTHSSVH*ASWPSHLASRHAAP
Trigger: CGGAGCTGCATGACGGCTTGCCAGATGAGACGGCCAACTTGCTCAATGAACAGAACTGTGTGTCACACAACAAGGCCAACCACAGCCTGC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CAA 90 bp TCCAGGGAAAGGGGCAAAGTCTTTGGTCTCAAGGCTGTAGGACGCAGCATGGCAAGCAGGTCCACGATGTaGGAACGTTCTCCCTCGAAC +
Preference number: 5 (lower is better)
Translates to: SRERGKVFGLKAVGRSMASRSTM*ERSPSN
Trigger: GTTCGAGGGAGAACGTTCCAACATCGTGGACCTGCT...TGCCATGCTGCGTCCTACAGCCTTGAGACCAAAGACTTTGCCCCTTTCCCTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CAA 90 bp GCCGTCCTCCGCGGCTTCCAGGGAAAGGGGCAAAGTCTTTGGTCTCAAGGCTGTCGCCATCAAGGCATTTaGGTATTGCTGTCTGGAGAT +
Preference number: 5 (lower is better)
Translates to: AVLRGFQGKGQSLWSQGCRHQGI*VLLSGD
Trigger: ATCTCCAGACAGCAATACCAAAATGCCTTGATGGCG...ACAGCCTTGAGACCAAAGACTTTGCCCCTTTCCCTGGAAGCCGCGGAGGACGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS TCA 90 bp ACTTATTTTCCCCTGGAGAGCCCGCAGCTAACACCTCTGTCCTGCTaGCAACAAAGGTGCGAGACAGGGACAAAGGAACTGGAGAGGCTG +
Preference number: 5 (lower is better)
Translates to: TYFPLESPQLTPLSC*QQRCETGTKELERL
Trigger: CAGCCTCTCCAGTTCCTTTGTCCCTGTCTCGCACCTTTGTTGTCAGCAGGACAGAGGTGTTAGCTGCGGGCTCTCCAGGGGAAAATAAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR CAA 90 bp CTAGGTACCGGTAGCAGGTCACTCAGCTCCTTTAAAAGCTACTCTCAACGACCCTCGGGAGCAGATGGCTaGGGGCACGATTTCTCCGAA +
Preference number: 5 (lower is better)
Translates to: LGTGSRSLSSFKSYSQRPSGADG*GHDFSE
Trigger: TTCGGAGAAATCGTGCCCCAAGCCATCTGCTCCCGA...GGGTCGTTGAGAGTAGCTTTTAAAGGAGCTGAGTGACCTGCTACCGGTACCTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR CAA 90 bp ATGCCCCAGCTGTGGATGTCACGTGTCCAGTTTCCATCCCTCCCCCAGCCGTCCGGGCCACTTTCTTTTTaGTTCTGTTATCGGTGTACA +
Preference number: 5 (lower is better)
Translates to: MPQLWMSRVQFPSLPQPSGPLSF*FCYRCT
Trigger: TGTACACCGATAACAGAACAAAAAAGAAAGTGGCCC...GGACGGCTGGGGGAGGGATGGAAACTGGACACGTGACATCCACAGCTGGGGCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CAA 90 bp CCCAGCCGTCCTCCGCGGCTTCCAGGGAAAGGGGCAAAGTCTTTGGTCTCAAGGGGGCCACTTTCTTTTTaGTTCTGTTATCGGTGTACA +
Preference number: 5 (lower is better)
Translates to: PSRPPRLPGKGAKSLVSRGPLSF*FCYRCT
Trigger: TGTACACCGATAACAGAACAAAAAAGAAAGTGGCCC...CCTTGAGACCAAAGACTTTGCCCCTTTCCCTGGAAGCCGCGGAGGACGGCTGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CAA 90 bp TCCAGGGAAAGGGGCAAAGTCTTTGGTCTCAAGGCTGTAGGACGCAGCATGGCACTGTGGTTGGCCTTGTaGTGTGACACACAGTTCTGT +
Preference number: 5 (lower is better)
Translates to: SRERGKVFGLKAVGRSMALWLAL*CDTQFC
Trigger: ACAGAACTGTGTGTCACACAACAAGGCCAACCACAG...TGCCATGCTGCGTCCTACAGCCTTGAGACCAAAGACTTTGCCCCTTTCCCTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CAA 90 bp CAAAGGACCAACCCAACATGTCACCCTCCCAGAGTCCATCCTGGGGTTAGCAGACTGTGGTTGGCCTTGTaGTGTGACACACAGTTCTGT +
Preference number: 5 (lower is better)
Translates to: QRTNPTCHPPRVHPGVSRLWLAL*CDTQFC
Trigger: ACAGAACTGTGTGTCACACAACAAGGCCAACCACAG...TCTGCTAACCCCAGGATGGACTCTGGGAGGGTGACATGTTGGGTTGGTCCTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR CAA 90 bp CACCAGAGGTTACAGGAATGGGGGATGAAGTCATTGCCTCCTGCCAATGATAAAGAGCTCCAGCGCCCCTaGGATGATGTTCAGCTCTTC +
Preference number: 5 (lower is better)
Translates to: HQRLQEWGMKSLPPANDKELQRP*DDVQLF
Trigger: GAAGAGCTGAACATCATCCAAGGGGCGCTGGAGCTC...TTTATCATTGGCAGGAGGCAATGACTTCATCCCCCATTCCTGTAACCTCTGGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR CAA 90 bp AGGGGCAAAGTCTTTGGTCTCAAGGCTGTAGGACGCAGCATGGCAGACAAGCTCACACAGTTCTGTTCATaGAGCAAGTTGGCCGTCTCA +
Preference number: 5 (lower is better)
Translates to: RGKVFGLKAVGRSMADKLTQFCS*SKLAVS
Trigger: TGAGACGGCCAACTTGCTCAATGAACAGAACTGTGT...GAGCTTGTCTGCCATGCTGCGTCCTACAGCCTTGAGACCAAAGACTTTGCCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CAA 90 bp TGTCTCCGAATTCTTGAAAGCCATGCCCCAGCTGTGGATGTCACGTGTCCAGTTAGGCTGTGGTTGGCCTaGTTGTGTGACACACAGTTC +
Preference number: 5 (lower is better)
Translates to: CLRILESHAPAVDVTCPVRLWLA*LCDTQF
Trigger: GAACTGTGTGTCACACAACAAGGCCAACCACAGCCT...AACTGGACACGTGACATCCACAGCTGGGGCATGGCTTTCAAGAATTCGGAGACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS TCA 90 bp TCCGAGACGCCATCAAGGCATTTTGGTATTGCTGTCTGGAGATCTTaGCGAACTGTAGGTCAGAGAGGGCTCGTACTGAGTAGTCAGGGA +
Preference number: 5 (lower is better)
Translates to: SETPSRHFGIAVWRS*RTVGQRGLVLSSQG
Trigger: TCCCTGACTACTCAGTACGAGCCCTCTCTGACCTACAGTTCGTCAAGATCTCCAGACAGCAATACCAAAATGCCTTGATGGCGTCTCGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CAA 90 bp CACCAGAGGTTACAGGAATGGGGGATGAAGTCATTGCCTCCTGCCAATGATAAAGACCACGTCTCGTTGTaGATGTTCTGCCCGTACACC +
Preference number: 5 (lower is better)
Translates to: HQRLQEWGMKSLPPANDKDHVSL*MFCPYT
Trigger: GGTGTACGGGCAGAACATCAACAACGAGACGTGGTC...TTTATCATTGGCAGGAGGCAATGACTTCATCCCCCATTCCTGTAACCTCTGGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR CAA 90 bp GAATTCTTGAAAGCCATGCCCCAGCTGTGGATGTCACGTGTCCAGTTTCCATCCTTGCTCTTCTCCATCTaGCGCAGCGGTTTAATCTCG +
Preference number: 5 (lower is better)
Translates to: EFLKAMPQLWMSRVQFPSLLFSI*RSGLIS
Trigger: CGAGATTAAACCGCTGCGCAAGATGGAGAAGAGCAA...GGATGGAAACTGGACACGTGACATCCACAGCTGGGGCATGGCTTTCAAGAATTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CAA 90 bp TATTCAACAAAGGACCAACCCAACATGTCACCCTCCCAGAGTCCATCCTGGGGTTTGCTCTTCTCCATCTaGCGCAGCGGTTTAATCTCG +
Preference number: 5 (lower is better)
Translates to: YSTKDQPNMSPSQSPSWGLLFSI*RSGLIS
Trigger: CGAGATTAAACCGCTGCGCAAGATGGAGAAGAGCAA...ACCCCAGGATGGACTCTGGGAGGGTGACATGTTGGGTTGGTCCTTTGTTGAATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR CAA 90 bp TGTCTCCGAATTCTTGAAAGCCATGCCCCAGCTGTGGATGTCACGTGTCCAGTTCACTCAGGGGCTTTCTaGTTCTTCTCGTCGTACTTC +
Preference number: 5 (lower is better)
Translates to: CLRILESHAPAVDVTCPVHSGAF*FFSSYF
Trigger: GAAGTACGACGAGAAGAACAAGAAAGCCCCTGAGTG...AACTGGACACGTGACATCCACAGCTGGGGCATGGCTTTCAAGAATTCGGAGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CAA 90 bp CATGAAATGGCCACAACACACATTTGGTTTCTGAATCGATTTGGGGTCAAACTGTGCTGCTCCCCAAGGTaGGCGTCATGGCGTCAATCC +
Preference number: 5 (lower is better)
Translates to: HEMATTHIWFLNRFGVKLCCSPR*ASWRQS
Trigger: GGATTGACGCCATGACGCCAACCTTGGGGAGCAGCA...CAGTTTGACCCCAAATCGATTCAGAAACCAAATGTGTGTTGTGGCCATTTCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS GCA 90 bp GCTTCTACTTCTGTTGCTAGGAAACGGTGCATGGCCAGGAGAAGCTaGGGTGATATTTTAACCTTCATCTCGCTGTCCGTCTGCTTAAAG +
Preference number: 5 (lower is better)
Translates to: ASTSVARKRCMARRS*GDILTFISLSVCLK
Trigger: CTTTAAGCAGACGGACAGCGAGATGAAGGTTAAAATATCACCGCAGCTTCTCCTGGCCATGCACCGTTTCCTAGCAACAGAAGTAGAAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CAA 90 bp GACAGACTTGGCACGTTCTGCAGTGACATGATTTTTCTTCATTCATCCATCAAGCCCGATGTGCGGCGATaGAGAATGATGTGGGGCAAG +
Preference number: 5 (lower is better)
Translates to: DRLGTFCSDMIFLHSSIKPDVRR*RMMWGK
Trigger: CTTGCCCCACATCATTCTCAATCGCCGCACATCGGG...CTTGATGGATGAATGAAGAAAAATCATGTCACTGCAGAACGTGCCAAGTCTGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR CAA 90 bp GCACGCGCACACGCACACGCACAGAGTTTTCAGAGTCATCAGGTATTCAACAAAAAAGGCAGAGAAATCTaGCTTTCTTTCACGGTGGGC +
Preference number: 5 (lower is better)
Translates to: ARAHAHAQSFQSHQVFNKKGREI*LSFTVG
Trigger: GCCCACCGTGAAAGAAAGCAAGATTTCTCTGCCTTT...TTTGTTGAATACCTGATGACTCTGAAAACTCTGTGCGTGTGCGTGTGCGCGTGC
49% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR CAA 90 bp TGTCTCCGAATTCTTGAAAGCCATGCCCCAGCTGTGGATGTCACGTGTCCAGTTCAAGGCATTTTGGTATaGCTGTCTGGAGATCTTGAC +
Preference number: 5 (lower is better)
Translates to: CLRILESHAPAVDVTCPVQGILV*LSGDLD
Trigger: GTCAAGATCTCCAGACAGCAATACCAAAATGCCTTG...AACTGGACACGTGACATCCACAGCTGGGGCATGGCTTTCAAGAATTCGGAGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CAA 90 bp AATAAACATGATTCTATTTGGGTGGAAGAAGTTTGTCTCCGAATTCTTGAAAGCGTGAGGAAGATGGTGTaGGCCCCTACCGCCAGGCCG +
Preference number: 5 (lower is better)
Translates to: NKHDSIWVEEVCLRILESVRKMV*APTARP
Trigger: CGGCCTGGCGGTAGGGGCCAACACCATCTTCCTCAC...GCTTTCAAGAATTCGGAGACAAACTTCTTCCACCCAAATAGAATCATGTTTATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CAA 90 bp GACAGACTTGGCACGTTCTGCAGTGACATGATTTTTCTTCATTCATCCATCAAGAGCAGGTCCACGATGTaGGAACGTTCTCCCTCGAAC +
Preference number: 5 (lower is better)
Translates to: DRLGTFCSDMIFLHSSIKSRSTM*ERSPSN
Trigger: GTTCGAGGGAGAACGTTCCAACATCGTGGACCTGCT...CTTGATGGATGAATGAAGAAAAATCATGTCACTGCAGAACGTGCCAAGTCTGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR CAA 90 bp CTGGCCCTGGCCACACTCAGAGAGCTTACATCTGAACATAATATGCTCCTTATTCACTCAGGGGCTTTCTaGTTCTTCTCGTCGTACTTC +
Preference number: 5 (lower is better)
Translates to: LALATLRELTSEHNMLLIHSGAF*FFSSYF
Trigger: GAAGTACGACGAGAAGAACAAGAAAGCCCCTGAGTG...AATAAGGAGCATATTATGTTCAGATGTAAGCTCTCTGAGTGTGGCCAGGGCCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS-3UTR CAA 90 bp AATAAACATGATTCTATTTGGGTGGAAGAAGTTTGTCTCCGAATTCTTGAAAGCGAGCTCCAGCGCCCCTaGGATGATGTTCAGCTCTTC +
Preference number: 5 (lower is better)
Translates to: NKHDSIWVEEVCLRILESELQRP*DDVQLF
Trigger: GAAGAGCTGAACATCATCCAAGGGGCGCTGGAGCTC...GCTTTCAAGAATTCGGAGACAAACTTCTTCCACCCAAATAGAATCATGTTTATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS-3UTR CAA 90 bp AATAAACATGATTCTATTTGGGTGGAAGAAGTTTGTCTCCGAATTCTTGAAAGCACGCTTCTACTTCTGTaGCTAGGAAACGGTGCATGG +
Preference number: 5 (lower is better)
Translates to: NKHDSIWVEEVCLRILESTLLLL*LGNGAW
Trigger: CCATGCACCGTTTCCTAGCAACAGAAGTAGAAGCGT...GCTTTCAAGAATTCGGAGACAAACTTCTTCCACCCAAATAGAATCATGTTTATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS CAA 90 bp TCGGCCCACGGAGGAGGCGGGAGTCCGGCCACCCCCGCGCCACCCTaGCCCCCGACGGTGCCACTCGCAGACCCGGAGCCGCCGGCGCCT +
Preference number: 6 (lower is better)
Translates to: SAHGGGGSPATPAPP*PPTVPLADPEPPAP
Trigger: AGGCGCCGGCGGCTCCGGGTCTGCGAGTGGCACCGTCGGGGGCAAGGGTGGCGCGGGGGTGGCCGGACTCCCGCCTCCTCCGTGGGCCGA
80% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS GCA 72 bp GAGGAGGCGGGAGTCCGGCCACCCCCGCGCCACCCTTaGCCCCGACGGTGCCACTCGCAGACCCGGAGCCGC +
Preference number: 6 (lower is better)
Translates to: EEAGVRPPPRHP*PRRCHSQTRSR
Trigger: GCGGCTCCGGGTCTGCGAGTGGCACCGTCGGGGGCAAGGGTGGCGCGGGGGTGGCCGGACTCCCGCCTCCTC
79% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS CAA 72 bp GGAGGAGGCGGGAGTCCGGCCACCCCCGCGCCACCCTaGCCCCCGACGGTGCCACTCGCAGACCCGGAGCCG +
Preference number: 6 (lower is better)
Translates to: GGGGSPATPAPP*PPTVPLADPEP
Trigger: CGGCTCCGGGTCTGCGAGTGGCACCGTCGGGGGCAAGGGTGGCGCGGGGGTGGCCGGACTCCCGCCTCCTCC
79% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS GCA 72 bp GAGGCTGCGGCGCGCCGCCATCTTCCAAGTGGGCAGTaGGGCGGCTGCCTGCCCGCCCGCCATCTTTACTTC +
Preference number: 6 (lower is better)
Translates to: EAAARRHLPSGQ*GGCLPARHLYF
Trigger: GAAGTAAAGATGGCGGGCGGGCAGGCAGCCGCCGCACTGCCCACTTGGAAGATGGCGGCGCGCCGCAGCCTC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS GCA 72 bp AGCCCACGCTCGCTGGGTGTGTGCCGGCGCCGCTCGTaGTCAGTGAAGGCGATGCGGGACCACGTCTCGTTG +
Preference number: 6 (lower is better)
Translates to: SPRSLGVCRRRS*SVKAMRDHVSL
Trigger: CAACGAGACGTGGTCCCGCATCGCCTTCACTGAGCACGAGCGGCGCCGGCACACACCCAGCGAGCGTGGGCT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS GCA 72 bp GCGCGCCGCCATCTTCCAAGTGGGCAGTGCGGCGGCTaGCTGCCCGCCCGCCATCTTTACTTCGGGTTCACA +
Preference number: 6 (lower is better)
Translates to: ARRHLPSGQCGG*LPARHLYFGFT
Trigger: TGTGAACCCGAAGTAAAGATGGCGGGCGGGCAGGCAGCCGCCGCACTGCCCACTTGGAAGATGGCGGCGCGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS CAA 90 bp CGGCGCCGCTCGTGCTCAGTGAAGGCGATGCGGGACCACGTCTCGTaGTTGATGTTCTGCCCGTACACCCGCAGCTTGACCCGGGTCCGC +
Preference number: 6 (lower is better)
Translates to: RRRSCSVKAMRDHVS*LMFCPYTRSLTRVR
Trigger: GCGGACCCGGGTCAAGCTGCGGGTGTACGGGCAGAACATCAACAACGAGACGTGGTCCCGCATCGCCTTCACTGAGCACGAGCGGCGCCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS TCA 72 bp GGGTCCGCTCGCTCACCCGCAGAGCACCCCCTTCCATaGACGACACGTCGTTCGTATCCTCCAGCCGCAGCC +
Preference number: 6 (lower is better)
Translates to: GSARSPAEHPLP*TTRRSYPPAAA
Trigger: GGCTGCGGCTGGAGGATACGAACGACGTGTCGTTCATGGAAGGGGGTGCTCTGCGGGTGAGCGAGCGGACCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS GCA 72 bp GCCGCCATCTTCCAAGTGGGCAGTGCGGCGGCTGCCTaGCCGCCCGCCATCTTTACTTCGGGTTCACAAGCG +
Preference number: 6 (lower is better)
Translates to: AAIFQVGSAAAA*PPAIFTSGSQA
Trigger: CGCTTGTGAACCCGAAGTAAAGATGGCGGGCGGGCAGGCAGCCGCCGCACTGCCCACTTGGAAGATGGCGGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS CAA 90 bp CGCCGCTCGTGCTCAGTGAAGGCGATGCGGGACCACGTCTCGTTGTaGATGTTCTGCCCGTACACCCGCAGCTTGACCCGGGTCCGCTCG +
Preference number: 6 (lower is better)
Translates to: RRSCSVKAMRDHVSL*MFCPYTRSLTRVRS
Trigger: CGAGCGGACCCGGGTCAAGCTGCGGGTGTACGGGCAGAACATCAACAACGAGACGTGGTCCCGCATCGCCTTCACTGAGCACGAGCGGCG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS TCA 72 bp ACGACACGTCGTTCGTATCCTCCAGCCGCAGCCCGATaGTCACGGTCTCCTCGTTCTCGCCGGCCGCTGTGC +
Preference number: 6 (lower is better)
Translates to: TTRRSYPPAAAR*SRSPRSRRPLC
Trigger: GCACAGCGGCCGGCGAGAACGAGGAGACCGTGATCATCGGGCTGCGGCTGGAGGATACGAACGACGTGTCGT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS GCA 72 bp GTACGTTGCCCAGCAGCAGCGAGCACAGCAGGTAGTTaGCCTGCCTGCGCACCGGCTCGATGCGCTTGGCAT +
Preference number: 6 (lower is better)
Translates to: VRCPAAASTAGS*PACAPARCAWH
Trigger: ATGCCAAGCGCATCGAGCCGGTGCGCAGGCAGGGCAACTACCTGCTGTGCTCGCTGCTGCTGGGCAACGTAC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS GCA 72 bp AAGGCGATGCGGGACCACGTCTCGTTGTTGATGTTCTaGCCGTACACCCGCAGCTTGACCCGGGTCCGCTCG +
Preference number: 6 (lower is better)
Translates to: KAMRDHVSLLMF*PYTRSLTRVRS
Trigger: CGAGCGGACCCGGGTCAAGCTGCGGGTGTACGGGCAGAACATCAACAACGAGACGTGGTCCCGCATCGCCTT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS CCA 72 bp TCGCAGACCCGGAGCCGCCGGCGCCTAGTGCGGGCGTaGAGAGAGACGTGCACAGGTAATAAGACTTGCTCT +
Preference number: 6 (lower is better)
Translates to: SQTRSRRRLVRA*RETCTGNKTCS
Trigger: AGAGCAAGTCTTATTACCTGTGCACGTCTCTCTCCACGCCCGCACTAGGCGCCGGCGGCTCCGGGTCTGCGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS CCA 72 bp TCATCTTGGTGTCCTCACCGTCGTGGTAAATCCAGGTaGTCTCGGCCCACGGAGGAGGCGGGAGTCCGGCCA +
Preference number: 6 (lower is better)
Translates to: SSWCPHRRGKSR*SRPTEEAGVRP
Trigger: TGGCCGGACTCCCGCCTCCTCCGTGGGCCGAGACCACCTGGATTTACCACGACGGTGAGGACACCAAGATGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS CAA 72 bp CCCGCAATGTCGTCCAGCAGGATGGTGAGCGTGGTGTaGACCAGTACGTTGCCCAGCAGCAGCGAGCACAGC +
Preference number: 6 (lower is better)
Translates to: PAMSSSRMVSVV*TSTLPSSSEHS
Trigger: GCTGTGCTCGCTGCTGCTGGGCAACGTACTGGTCAACACCACGCTCACCATCCTGCTGGACGACATTGCGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS CAA 72 bp CAGTCCCTGAGGGGAGTCATCACGTCCTCCACCGTCTaGGTGCGGAGCTCCAGCGCCCCTTGGATGATGTTC +
Preference number: 6 (lower is better)
Translates to: QSLRGVITSSTV*VRSSSAPWMMF
Trigger: GAACATCATCCAAGGGGCGCTGGAGCTCCGCACCAAGACGGTGGAGGACGTGATGACTCCCCTCAGGGACTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS TCA 72 bp GCGATTGAGAATGATGTGGGGCAAGATGATGATGTCTaGGGTGCGGATGCCGCAGCGCTGGGGGCCGCTGTC +
Preference number: 6 (lower is better)
Translates to: AIENDVGQDDDV*GADAAALGAAV
Trigger: GACAGCGGCCCCCAGCGCTGCGGCATCCGCACCTCAGACATCATCATCTTGCCCCACATCATTCTCAATCGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS CAA 72 bp TGCTCAGTGAAGGCGATGCGGGACCACGTCTCGTTGTaGATGTTCTGCCCGTACACCCGCAGCTTGACCCGG +
Preference number: 6 (lower is better)
Translates to: CSVKAMRDHVSL*MFCPYTRSLTR
Trigger: CCGGGTCAAGCTGCGGGTGTACGGGCAGAACATCAACAACGAGACGTGGTCCCGCATCGCCTTCACTGAGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS TCA 72 bp AGGTTGGCGTCATGGCGTCAATCCGGTCGCTCCGACTaGGAGAATCTGAGTGATTCAGGCCACAGGGGCGAG +
Preference number: 6 (lower is better)
Translates to: RLASWRQSGRSD*ENLSDSGHRGE
Trigger: CTCGCCCCTGTGGCCTGAATCACTCAGATTCTCTCAGTCGGAGCGACCGGATTGACGCCATGACGCCAACCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS GCA 72 bp AGCCGCCGGCGCCTAGTGCGGGCGTGGAGAGAGACGTaGACAGGTAATAAGACTTGCTCTTCTCCATCTTGC +
Preference number: 6 (lower is better)
Translates to: SRRRLVRAWRET*TGNKTCSSPSC
Trigger: GCAAGATGGAGAAGAGCAAGTCTTATTACCTGTGCACGTCTCTCTCCACGCCCGCACTAGGCGCCGGCGGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS CAA 72 bp TCGTGCTCAGTGAAGGCGATGCGGGACCACGTCTCGTaGTTGATGTTCTGCCCGTACACCCGCAGCTTGACC +
Preference number: 6 (lower is better)
Translates to: SCSVKAMRDHVS*LMFCPYTRSLT
Trigger: GGTCAAGCTGCGGGTGTACGGGCAGAACATCAACAACGAGACGTGGTCCCGCATCGCCTTCACTGAGCACGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS TCA 72 bp CCCCTGGAGAGCCCGCAGCTAACACCTCTGTCCTGCTaGCAACAAAGGTGCGAGACAGGGACAAAGGAACTG +
Preference number: 6 (lower is better)
Translates to: PLESPQLTPLSC*QQRCETGTKEL
Trigger: CAGTTCCTTTGTCCCTGTCTCGCACCTTTGTTGTCAGCAGGACAGAGGTGTTAGCTGCGGGCTCTCCAGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099373.12
CDS CCA 72 bp GGTAGTTGCCCTGCCTGCGCACCGGCTCGATGCGCTTaGCATAATTCTTCTCTTTCTCCGTGCCGCAGTTTT +
Preference number: 6 (lower is better)
Translates to: GSCPACAPARCA*HNSSLSPCRSF
Trigger: AAAACTGCGGCACGGAGAAAGAGAAGAATTATGCCAAGCGCATCGAGCCGGTGCGCAGGCAGGGCAACTACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS CAA 90 bp GCTGAACATGCCCGACAGGCACAGCAGCAGCGAGATGAAGATCACTaGCAGCCAGAAGGGCAGCAAGAACTTCTTCTCCTCGCCCACTAT +
Preference number: 6 (lower is better)
Translates to: AEHARQAQQQRDEDH*QPEGQQELLLLAHY
Trigger: ATAGTGGGCGAGGAGAAGAAGTTCTTGCTGCCCTTCTGGCTGCAAGTGATCTTCATCTCGCTGCTGCTGTGCCTGTCGGGCATGTTCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS CCA 72 bp TCGATGATGCCCGATGTGCGGCGATTGAGAATGATGTaGGGCAAGATGATGATGTCTGAGGTGCGGATGCCG +
Preference number: 6 (lower is better)
Translates to: SMMPDVRRLRMM*GKMMMSEVRMP
Trigger: CGGCATCCGCACCTCAGACATCATCATCTTGCCCCACATCATTCTCAATCGCCGCACATCGGGCATCATCGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS CAA 90 bp TGCAGGCTGTGGTTGGCCTTGTTGTGTGACACACAGTTCTGTTCATaGAGCAAGTTGGCCGTCTCATCTGGCAAGCCGTCATGCAGCTCC +
Preference number: 6 (lower is better)
Translates to: CRLWLALLCDTQFCS*SKLAVSSGKPSCSS
Trigger: GGAGCTGCATGACGGCTTGCCAGATGAGACGGCCAACTTGCTCAATGAACAGAACTGTGTGTCACACAACAAGGCCAACCACAGCCTGCA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS CAA 90 bp CGCAGCGGTTTAATCTCGATCTCGATGATGCCCGATGTGCGGCGATaGAGAATGATGTGGGGCAAGATGATGATGTCTGAGGTGCGGATG +
Preference number: 6 (lower is better)
Translates to: RSGLISISMMPDVRR*RMMWGKMMMSEVRM
Trigger: CATCCGCACCTCAGACATCATCATCTTGCCCCACATCATTCTCAATCGCCGCACATCGGGCATCATCGAGATCGAGATTAAACCGCTGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS CCA 72 bp GCAGCAAGAACTTCTTCTCCTCGCCCACTATCATCTTaGTGTCCTCACCGTCGTGGTAAATCCAGGTGGTCT +
Preference number: 6 (lower is better)
Translates to: AARTSSPRPLSS*CPHRRGKSRWS
Trigger: AGACCACCTGGATTTACCACGACGGTGAGGACACCAAGATGATAGTGGGCGAGGAGAAGAAGTTCTTGCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS CAA 90 bp TGGTTGGCCTTGTTGTGTGACACACAGTTCTGTTCATTGAGCAAGTaGGCCGTCTCATCTGGCAAGCCGTCATGCAGCTCCGTAAGAGTC +
Preference number: 6 (lower is better)
Translates to: WLALLCDTQFCSLSK*AVSSGKPSCSSVRV
Trigger: GACTCTTACGGAGCTGCATGACGGCTTGCCAGATGAGACGGCCAACTTGCTCAATGAACAGAACTGTGTGTCACACAACAAGGCCAACCA
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS TCA 72 bp GGTTGGCCTTGTTGTGTGACACACAGTTCTGTTCATTaGGCAAGTTGGCCGTCTCATCTGGCAAGCCGTCAT +
Preference number: 6 (lower is better)
Translates to: GWPCCVTHSSVH*ASWPSHLASRH
Trigger: ATGACGGCTTGCCAGATGAGACGGCCAACTTGCTCAATGAACAGAACTGTGTGTCACACAACAAGGCCAACC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS GCA 72 bp TCTGTTGCTAGGAAACGGTGCATGGCCAGGAGAAGCTaGGGTGATATTTTAACCTTCATCTCGCTGTCCGTC +
Preference number: 6 (lower is better)
Translates to: SVARKRCMARRS*GDILTFISLSV
Trigger: GACGGACAGCGAGATGAAGGTTAAAATATCACCGCAGCTTCTCCTGGCCATGCACCGTTTCCTAGCAACAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS CAA 72 bp TGGTTGGCCTTGTTGTGTGACACACAGTTCTGTTCATaGAGCAAGTTGGCCGTCTCATCTGGCAAGCCGTCA +
Preference number: 6 (lower is better)
Translates to: WLALLCDTQFCS*SKLAVSSGKPS
Trigger: TGACGGCTTGCCAGATGAGACGGCCAACTTGCTCAATGAACAGAACTGTGTGTCACACAACAAGGCCAACCA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS GCA 72 bp GGGCTAAACGCTTCTACTTCTGTTGCTAGGAAACGGTaGATGGCCAGGAGAAGCTGCGGTGATATTTTAACC +
Preference number: 6 (lower is better)
Translates to: GLNASTSVARKR*MARRSCGDILT
Trigger: GGTTAAAATATCACCGCAGCTTCTCCTGGCCATGCACCGTTTCCTAGCAACAGAAGTAGAAGCGTTTAGCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS CCA 72 bp GGCGTTTTGTCCATCCGAGACGCCATCAAGGCATTTTaGTATTGCTGTCTGGAGATCTTGACGAACTGTAGG +
Preference number: 6 (lower is better)
Translates to: GVLSIRDAIKAF*YCCLEILTNCR
Trigger: CCTACAGTTCGTCAAGATCTCCAGACAGCAATACCAAAATGCCTTGATGGCGTCTCGGATGGACAAAACGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS CCA 72 bp ACAGTTCTGTTCATTGAGCAAGTTGGCCGTCTCATCTaGCAAGCCGTCATGCAGCTCCGTAAGAGTCAATTC +
Preference number: 6 (lower is better)
Translates to: TVLFIEQVGRLI*QAVMQLRKSQF
Trigger: GAATTGACTCTTACGGAGCTGCATGACGGCTTGCCAGATGAGACGGCCAACTTGCTCAATGAACAGAACTGT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS GCA 72 bp TTGTCCATCCGAGACGCCATCAAGGCATTTTGGTATTaGTGTCTGGAGATCTTGACGAACTGTAGGTCAGAG +
Preference number: 6 (lower is better)
Translates to: LSIRDAIKAFWY*CLEILTNCRSE
Trigger: CTCTGACCTACAGTTCGTCAAGATCTCCAGACAGCAATACCAAAATGCCTTGATGGCGTCTCGGATGGACAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12
CDS CAA 72 bp TTAATCTCGATCTCGATGATGCCCGATGTGCGGCGATaGAGAATGATGTGGGGCAAGATGATGATGTCTGAG +
Preference number: 6 (lower is better)
Translates to: LISISMMPDVRR*RMMWGKMMMSE
Trigger: CTCAGACATCATCATCTTGCCCCACATCATTCTCAATCGCCGCACATCGGGCATCATCGAGATCGAGATTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000077666.6
ENSMUST00000099373.12