Pregenerated sensors for CNN2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000004665Ensembl transcript IDs: ENSMUST00000004784.11, ENSMUST00000105374.2
Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GAAGAAACAGGAAGCCCATTGGGGCCAGCCTCTCCCACAGCCCACTaGGAAACGCACAGCCTCACTGTCCCACCAAGGACACCCATGTCC | + |
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Preference number: 1 (lower is better) Translates to: EETGSPLGPASPTAH*ETHSLTVPPRTPMS Trigger: GGACATGGGTGTCCTTGGTGGGACAGTGAGGCTGTGCGTTTCCCAGTGGGCTGTGGGAGAGGCTGGCCCCAATGGGCTTCCTGTTTCTTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004784.11 |
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| 3UTR TCA 90 bp | CCTGTCTGGTGGGTCAATCCTGGGAAGGAAGCGAGGCATGGTGGGTaGGGAAGGAGCATAGATAGCACAGATCTGTCATCCCAGCCCTTA | + |
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Preference number: 1 (lower is better) Translates to: PVWWVNPGKEARHGG*GRSIDSTDLSSQPL Trigger: TAAGGGCTGGGATGACAGATCTGTGCTATCTATGCTCCTTCCTCACCCACCATGCCTCGCTTCCTTCCCAGGATTGACCCACCAGACAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004784.11 |
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| 3UTR GCA 90 bp | ATGATGTGGGACCTCAGGCAAAGACCAAGTTTAGGTCGGAAGGTTTaGACAAGGTCTTTGTATCCTGTGCCATCTCCTGCCACCAGCCAG | + |
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Preference number: 1 (lower is better) Translates to: MMWDLRQRPSLGRKV*TRSLYPVPSPATSQ Trigger: CTGGCTGGTGGCAGGAGATGGCACAGGATACAAAGACCTTGTGCAAACCTTCCGACCTAAACTTGGTCTTTGCCTGAGGTCCCACATCAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004784.11 |
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| 3UTR TCA 90 bp | CTGTGCCATCTCCTGCCACCAGCCAGAATTGTACCACAGCCTCTGTaGGCTCATCTCCAAAGTAGAGCTTCAAGGACCTGCACATTCATT | + |
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Preference number: 1 (lower is better) Translates to: LCHLLPPARIVPQPL*AHLQSRASRTCTFI Trigger: AATGAATGTGCAGGTCCTTGAAGCTCTACTTTGGAGATGAGCTCACAGAGGCTGTGGTACAATTCTGGCTGGTGGCAGGAGATGGCACAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004784.11 |
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| 3UTR CCA 90 bp | GGTCAGAGGACCATTTCCTGGAGTCTATTCTTGCCTACCATGATGTaGGACCTCAGGCAAAGACCAAGTTTAGGTCGGAAGGTTTGCACA | + |
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Preference number: 1 (lower is better) Translates to: GQRTISWSLFLPTMM*DLRQRPSLGRKVCT Trigger: TGTGCAAACCTTCCGACCTAAACTTGGTCTTTGCCTGAGGTCCCACATCATGGTAGGCAAGAATAGACTCCAGGAAATGGTCCTCTGACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004784.11 |
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| 3UTR CCA 90 bp | CACATGCATGCATGGCATATCTGTGGAGGTCAGAGGACCATTTCCTaGAGTCTATTCTTGCCTACCATGATGTGGGACCTCAGGCAAAGA | + |
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Preference number: 1 (lower is better) Translates to: HMHAWHICGGQRTIS*SLFLPTMMWDLRQR Trigger: TCTTTGCCTGAGGTCCCACATCATGGTAGGCAAGAATAGACTCCAGGAAATGGTCCTCTGACCTCCACAGATATGCCATGCATGCATGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004784.11 |
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| 3UTR GCA 90 bp | CAGAATCAGGTGGCAGCCCAATATCCTAAGATTAGAATCAATAGTTaGCTGGATTGTAGGCAAGATTCTCAGATGTCTCCTACTCTGGAA | + |
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Preference number: 1 (lower is better) Translates to: QNQVAAQYPKIRINS*LDCRQDSQMSPTLE Trigger: TTCCAGAGTAGGAGACATCTGAGAATCTTGCCTACAATCCAGGCAACTATTGATTCTAATCTTAGGATATTGGGCTGCCACCTGATTCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004784.11 |
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| 3UTR CCA 90 bp | TTAAATTTAATTAATTTGCTTATTAGGGTAGGACACATGCATGCATaGCATATCTGTGGAGGTCAGAGGACCATTTCCTGGAGTCTATTC | + |
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Preference number: 1 (lower is better) Translates to: LNLINLLIRVGHMHA*HICGGQRTISWSLF Trigger: GAATAGACTCCAGGAAATGGTCCTCTGACCTCCACAGATATGCCATGCATGCATGTGTCCTACCCTAATAAGCAAATTAATTAAATTTAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004784.11 |
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| 3UTR-3UTR TCA 90 bp | ACAGCCTCACTGTCCCACCAAGGACACCCATGTCCCCTGTCTGGTGGGTCAATCCAGCCCTTAGGAAGCTaGGGCAGGAGGATTGCAGTG | + |
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Preference number: 2 (lower is better) Translates to: TASLSHQGHPCPLSGGSIQPLGS*GRRIAV Trigger: CACTGCAATCCTCCTGCCTCAGCTTCCTAAGGGCTG...GATTGACCCACCAGACAGGGGACATGGGTGTCCTTGGTGGGACAGTGAGGCTGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004784.11 |
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| 3UTR-3UTR CCA 90 bp | AGTTTCCCCACGGGGCACAGGAGGGTGAAGTCTGAGAGTCGTGGGAAAGCAAACCCCATGTCCCCTGTCTaGTGGGTCAATCCTGGGAAG | + |
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Preference number: 2 (lower is better) Translates to: SFPTGHRRVKSESRGKANPMSPV*WVNPGK Trigger: CTTCCCAGGATTGACCCACCAGACAGGGGACATGGG...GTTTGCTTTCCCACGACTCTCAGACTTCACCCTCCTGTGCCCCGTGGGGAAACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000004784.11 |
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| 3UTR-3UTR TCA 90 bp | TATCTGTGGAGGTCAGAGGACCATTTCCTGGAGTCTATTCTTGCCTACCATGATCGGGGCACAGGAGGGTaGAGTCTGAGAGTCGTGGGA | + |
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Preference number: 2 (lower is better) Translates to: YLWRSEDHFLESILAYHDRGTGG*SLRVVG Trigger: TCCCACGACTCTCAGACTTCACCCTCCTGTGCCCCG...ATCATGGTAGGCAAGAATAGACTCCAGGAAATGGTCCTCTGACCTCCACAGATA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004784.11 |
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| 3UTR CAA 90 bp | CATGATGTGGGACCTCAGGCAAAGACCAAGTTTAGGTCGGAAGGTTaGCACAAGGTCTTTGTATCCTGTGCCATCTCCTGCCACCAGCCA | + |
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Preference number: 2 (lower is better) Translates to: HDVGPQAKTKFRSEG*HKVFVSCAISCHQP Trigger: TGGCTGGTGGCAGGAGATGGCACAGGATACAAAGACCTTGTGCAAACCTTCCGACCTAAACTTGGTCTTTGCCTGAGGTCCCACATCATG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004784.11 |
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| 3UTR-3UTR CCA 90 bp | ACATCATTCATTCAACTGTGTCTGTTTCTCGCCTTCTCCCTAACTTTTGTGCAGGGGCTGCTGATGCAGTaGGGGAGCTGGCATGCTGGG | + |
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Preference number: 2 (lower is better) Translates to: TSFIQLCLFLAFSLTFVQGLLMQ*GSWHAG Trigger: CCCAGCATGCCAGCTCCCCCACTGCATCAGCAGCCC...CTGCACAAAAGTTAGGGAGAAGGCGAGAAACAGACACAGTTGAATGAATGATGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000004784.11 |
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| 3UTR-3UTR GCA 90 bp | AGTTTCCCCACGGGGCACAGGAGGGTGAAGTCTGAGAGTCGTGGGAAAGCAAACGTCCCTCAGAATGCCTaGAGTATTTTAAAGCCTAGT | + |
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Preference number: 2 (lower is better) Translates to: SFPTGHRRVKSESRGKANVPQNA*SILKPS Trigger: ACTAGGCTTTAAAATACTGCAGGCATTCTGAGGGAC...GTTTGCTTTCCCACGACTCTCAGACTTCACCCTCCTGTGCCCCGTGGGGAAACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000004784.11 |
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| 3UTR CAA 90 bp | CACAAGGTCTTTGTATCCTGTGCCATCTCCTGCCACCAGCCAGAATaGTACCACAGCCTCTGTGAGCTCATCTCCAAAGTAGAGCTTCAA | + |
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Preference number: 2 (lower is better) Translates to: HKVFVSCAISCHQPE*YHSLCELISKVELQ Trigger: TTGAAGCTCTACTTTGGAGATGAGCTCACAGAGGCTGTGGTACAATTCTGGCTGGTGGCAGGAGATGGCACAGGATACAAAGACCTTGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004784.11 |
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| 3UTR-3UTR TCA 90 bp | AATCAGGGCCTGCACAGGGGCAGGGAAGCCTTCAAACACCAGAGGAGTGAGGGATCACAAACCACAAACTaGTGTGAAAGAGATGAAGAA | + |
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Preference number: 2 (lower is better) Translates to: NQGLHRGREAFKHQRSEGSQTTN*CERDEE Trigger: TTCTTCATCTCTTTCACATCAGTTTGTGGTTTGTGA...TCCCTCACTCCTCTGGTGTTTGAAGGCTTCCCTGCCCCTGTGCAGGCCCTGATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004784.11 |
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| 3UTR-3UTR GCA 90 bp | ATCAATAGTTGCCTGGATTGTAGGCAAGATTCTCAGATGTCTCCTACTCTGGAACACCTAATCAGGGCCTaGACAGGGGCAGGGAAGCCT | + |
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Preference number: 2 (lower is better) Translates to: INSCLDCRQDSQMSPTLEHLIRA*TGAGKP Trigger: AGGCTTCCCTGCCCCTGTGCAGGCCCTGATTAGGTG...TTCCAGAGTAGGAGACATCTGAGAATCTTGCCTACAATCCAGGCAACTATTGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004784.11 |
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| 3UTR-3UTR GCA 90 bp | TGGCATATCTGTGGAGGTCAGAGGACCATTTCCTGGAGTCTATTCTTGCCTACCCTTTTGTGCAGGGCTTaGACCTTGCTTCTAGACAGC | + |
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Preference number: 2 (lower is better) Translates to: WHICGGQRTISWSLFLPTLLCRA*TLLLDS Trigger: GCTGTCTAGAAGCAAGGTGCAAGCCCTGCACAAAAG...GGTAGGCAAGAATAGACTCCAGGAAATGGTCCTCTGACCTCCACAGATATGCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004784.11 |
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| 3UTR-3UTR CCA 90 bp | AGCCCCGATCTATCTCACATCATTCATTCAACTGTGTCTGTTTCTCGCCTTCTCCGTTGGGGTCACATCTaGCTTGCCTCAGTTTCCCCA | + |
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Preference number: 2 (lower is better) Translates to: SPDLSHIIHSTVSVSRLLRWGHI*LASVSP Trigger: TGGGGAAACTGAGGCAAGCCAGATGTGACCCCAACG...GAGAAGGCGAGAAACAGACACAGTTGAATGAATGATGTGAGATAGATCGGGGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000004784.11 |
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| 3UTR CAA 90 bp | TGGCATATCTGTGGAGGTCAGAGGACCATTTCCTGGAGTCTATTCTaGCCTACCATGATGTGGGACCTCAGGCAAAGACCAAGTTTAGGT | + |
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Preference number: 2 (lower is better) Translates to: WHICGGQRTISWSLF*PTMMWDLRQRPSLG Trigger: ACCTAAACTTGGTCTTTGCCTGAGGTCCCACATCATGGTAGGCAAGAATAGACTCCAGGAAATGGTCCTCTGACCTCCACAGATATGCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004784.11 |
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| 3UTR-3UTR CCA 90 bp | ATCAATAGTTGCCTGGATTGTAGGCAAGATTCTCAGATGTCTCCTACTCTGGAAGGAAGCGAGGCATGGTaGGTGAGGAAGGAGCATAGA | + |
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Preference number: 2 (lower is better) Translates to: INSCLDCRQDSQMSPTLEGSEAW*VRKEHR Trigger: TCTATGCTCCTTCCTCACCCACCATGCCTCGCTTCC...TTCCAGAGTAGGAGACATCTGAGAATCTTGCCTACAATCCAGGCAACTATTGAT 48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004784.11 |
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| 3UTR CCA 72 bp | ACTGTCCCACCAAGGACACCCATGTCCCCTGTCTGGTaGGTCAATCCTGGGAAGGAAGCGAGGCATGGTGGG | + |
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Preference number: 3 (lower is better) Translates to: TVPPRTPMSPVW*VNPGKEARHGG Trigger: CCCACCATGCCTCGCTTCCTTCCCAGGATTGACCCACCAGACAGGGGACATGGGTGTCCTTGGTGGGACAGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004784.11 |
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| 3UTR GCA 72 bp | TCCGAGGCCCAGACTCTAGCACACCTAATCAGGGCCTaGACAGGGGCAGGGAAGCCTTCAAACACCAGAGGA | + |
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Preference number: 3 (lower is better) Translates to: SEAQTLAHLIRA*TGAGKPSNTRG Trigger: TCCTCTGGTGTTTGAAGGCTTCCCTGCCCCTGTGCAGGCCCTGATTAGGTGTGCTAGAGTCTGGGCCTCGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004784.11 |
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| 3UTR CCA 72 bp | AAGGACACCCATGTCCCCTGTCTGGTGGGTCAATCCTaGGAAGGAAGCGAGGCATGGTGGGTGAGGAAGGAG | + |
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Preference number: 3 (lower is better) Translates to: KDTHVPCLVGQS*EGSEAWWVRKE Trigger: CTCCTTCCTCACCCACCATGCCTCGCTTCCTTCCCAGGATTGACCCACCAGACAGGGGACATGGGTGTCCTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004784.11 |
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| 3UTR CCA 72 bp | CTCACTGTCCCACCAAGGACACCCATGTCCCCTGTCTaGTGGGTCAATCCTGGGAAGGAAGCGAGGCATGGT | + |
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Preference number: 3 (lower is better) Translates to: LTVPPRTPMSPV*WVNPGKEARHG Trigger: ACCATGCCTCGCTTCCTTCCCAGGATTGACCCACCAGACAGGGGACATGGGTGTCCTTGGTGGGACAGTGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004784.11 |
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| 3UTR TCA 72 bp | GATAGCACAGATCTGTCATCCCAGCCCTTAGGAAGCTaGGGCAGGAGGATTGCAGTGAGTTCCAGGCCAGAG | + |
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Preference number: 3 (lower is better) Translates to: DSTDLSSQPLGS*GRRIAVSSRPE Trigger: CTCTGGCCTGGAACTCACTGCAATCCTCCTGCCTCAGCTTCCTAAGGGCTGGGATGACAGATCTGTGCTATC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004784.11 |
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| 3UTR TCA 72 bp | TGGGTCAATCCTGGGAAGGAAGCGAGGCATGGTGGGTaGGGAAGGAGCATAGATAGCACAGATCTGTCATCC | + |
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Preference number: 3 (lower is better) Translates to: WVNPGKEARHGG*GRSIDSTDLSS Trigger: GGATGACAGATCTGTGCTATCTATGCTCCTTCCTCACCCACCATGCCTCGCTTCCTTCCCAGGATTGACCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004784.11 |
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| 3UTR TCA 72 bp | CTCCTGCCACCAGCCAGAATTGTACCACAGCCTCTGTaGGCTCATCTCCAAAGTAGAGCTTCAAGGACCTGC | + |
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Preference number: 3 (lower is better) Translates to: LLPPARIVPQPL*AHLQSRASRTC Trigger: GCAGGTCCTTGAAGCTCTACTTTGGAGATGAGCTCACAGAGGCTGTGGTACAATTCTGGCTGGTGGCAGGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004784.11 |
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| 3UTR GCA 72 bp | GGTTTGCACAAGGTCTTTGTATCCTGTGCCATCTCCTaGCACCAGCCAGAATTGTACCACAGCCTCTGTGAG | + |
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Preference number: 3 (lower is better) Translates to: GLHKVFVSCAIS*HQPELYHSLCE Trigger: CTCACAGAGGCTGTGGTACAATTCTGGCTGGTGGCAGGAGATGGCACAGGATACAAAGACCTTGTGCAAACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004784.11 |
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| 3UTR CCA 72 bp | GCATGGCATATCTGTGGAGGTCAGAGGACCATTTCCTaGAGTCTATTCTTGCCTACCATGATGTGGGACCTC | + |
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Preference number: 3 (lower is better) Translates to: AWHICGGQRTIS*SLFLPTMMWDL Trigger: GAGGTCCCACATCATGGTAGGCAAGAATAGACTCCAGGAAATGGTCCTCTGACCTCCACAGATATGCCATGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004784.11 |
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| 3UTR CCA 72 bp | ACCATTTCCTGGAGTCTATTCTTGCCTACCATGATGTaGGACCTCAGGCAAAGACCAAGTTTAGGTCGGAAG | + |
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Preference number: 3 (lower is better) Translates to: TISWSLFLPTMM*DLRQRPSLGRK Trigger: CTTCCGACCTAAACTTGGTCTTTGCCTGAGGTCCCACATCATGGTAGGCAAGAATAGACTCCAGGAAATGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004784.11 |
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| 3UTR CCA 72 bp | TTCAAGGACCTGCACATTCATTTTAGCAACATCCTCTaGTCTAGACAATTTCAGAATCAGGTGGCAGCCCAA | + |
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Preference number: 3 (lower is better) Translates to: FKDLHIHFSNIL*SRQFQNQVAAQ Trigger: TTGGGCTGCCACCTGATTCTGAAATTGTCTAGACCAGAGGATGTTGCTAAAATGAATGTGCAGGTCCTTGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004784.11 |
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| 3UTR CCA 72 bp | ATTAATTTGCTTATTAGGGTAGGACACATGCATGCATaGCATATCTGTGGAGGTCAGAGGACCATTTCCTGG | + |
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Preference number: 3 (lower is better) Translates to: INLLIRVGHMHA*HICGGQRTISW Trigger: CCAGGAAATGGTCCTCTGACCTCCACAGATATGCCATGCATGCATGTGTCCTACCCTAATAAGCAAATTAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004784.11 |
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| 3UTR GCA 72 bp | AGTCGTGGGAAAGCAAACTTAGTCCCTCAGAATGCCTaGAGTATTTTAAAGCCTAGTGTACTCCAATACTTT | + |
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Preference number: 3 (lower is better) Translates to: SRGKANLVPQNA*SILKPSVLQYF Trigger: AAAGTATTGGAGTACACTAGGCTTTAAAATACTGCAGGCATTCTGAGGGACTAAGTTTGCTTTCCCACGACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004784.11 |
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| 3UTR CCA 72 bp | CAGCCCAATATCCTAAGATTAGAATCAATAGTTGCCTaGATTGTAGGCAAGATTCTCAGATGTCTCCTACTC | + |
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Preference number: 3 (lower is better) Translates to: QPNILRLESIVA*IVGKILRCLLL Trigger: GAGTAGGAGACATCTGAGAATCTTGCCTACAATCCAGGCAACTATTGATTCTAATCTTAGGATATTGGGCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004784.11 |
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| CDS-3UTR CCA 90 bp | CCCCAAAGCCCACACAGGGCTGCTGATGCAGTGGGGGAGCTGGCATGCTGGGTGAGCTGCAGAGCCCTGTaGGCAATACTTGGGATCGTA | + |
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Preference number: 4 (lower is better) Translates to: PQSPHRAADAVGELACWVSCRAL*AILGIV Trigger: TACGATCCCAAGTATTGCCCACAGGGCTCTGCAGCT...CACCCAGCATGCCAGCTCCCCCACTGCATCAGCAGCCCTGTGTGGGCTTTGGGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000004784.11 ENSMUST00000105374.2 |
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| CDS-3UTR GCA 90 bp | CCCAAAGCCCACACAGGGCTGCTGATGCAGTGGGGGAGCTGGCATGCTGGGTGCCCAGCTTCGGAGTTCTaGTTCCTTTTGGGGGTCATA | + |
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Preference number: 4 (lower is better) Translates to: PKAHTGLLMQWGSWHAGCPASEF*FLLGVI Trigger: TATGACCCCCAAAAGGAAGCAGAACTCCGAAGCTGG...GCACCCAGCATGCCAGCTCCCCCACTGCATCAGCAGCCCTGTGTGGGCTTTGGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000004784.11 ENSMUST00000105374.2 |
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| CDS-3UTR GCA 90 bp | GTCCCACCAAGGACACCCATGTCCCCTGTCTGGTGGGTCAATCCTGGGAAGGAAAGGAGCCCCGTCAGCTaGAGAGCCCTGTGGGCAATA | + |
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Preference number: 4 (lower is better) Translates to: VPPRTPMSPVWWVNPGKERSPVS*RALWAI Trigger: TATTGCCCACAGGGCTCTGCAGCTGACGGGGCTCCT...TTCCTTCCCAGGATTGACCCACCAGACAGGGGACATGGGTGTCCTTGGTGGGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004784.11 |
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| CDS-3UTR GCA 90 bp | AACCCCAAAGCCCACACAGGGCTGCTGATGCAGTGGGGGAGCTGGCATGCTGGGTGGCACACTTGTTGGTaGCCATCTTTCCAGCCAGTG | + |
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Preference number: 4 (lower is better) Translates to: NPKAHTGLLMQWGSWHAGWHTCW*PSFQPV Trigger: CACTGGCTGGAAAGATGGGCACCAACAAGTGTGCCA...CCCAGCATGCCAGCTCCCCCACTGCATCAGCAGCCCTGTGTGGGCTTTGGGGTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105374.2 |
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| 3UTR CAA 72 bp | TTCAAACACCAGAGGAGTGAGGGAGGGCTGCAGGCGTaGGGGTCACATCTGGCTTGCCTCAGTTTCCCCACG | + |
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Preference number: 4 (lower is better) Translates to: FKHQRSEGGLQA*GSHLACLSFPT Trigger: CGTGGGGAAACTGAGGCAAGCCAGATGTGACCCCAACGCCTGCAGCCCTCCCTCACTCCTCTGGTGTTTGAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004784.11 |
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| CDS-3UTR CCA 90 bp | CCCAAAGCCCACACAGGGCTGCTGATGCAGTGGGGGAGCTGGCATGCTGGGTGCCATAGAGATGTCTCCTaGTACCATAGGCTGTCATGC | + |
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Preference number: 4 (lower is better) Translates to: PKAHTGLLMQWGSWHAGCHRDVS*YHRLSC Trigger: GCATGACAGCCTATGGTACCAGGAGACATCTCTATG...GCACCCAGCATGCCAGCTCCCCCACTGCATCAGCAGCCCTGTGTGGGCTTTGGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000004784.11 ENSMUST00000105374.2 |
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| CDS-3UTR CCA 90 bp | ACAGCCTCACTGTCCCACCAAGGACACCCATGTCCCCTGTCTGGTGGGTCAATCAGCTGCAGAGCCCTGTaGGCAATACTTGGGATCGTA | + |
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Preference number: 4 (lower is better) Translates to: TASLSHQGHPCPLSGGSISCRAL*AILGIV Trigger: TACGATCCCAAGTATTGCCCACAGGGCTCTGCAGCT...GATTGACCCACCAGACAGGGGACATGGGTGTCCTTGGTGGGACAGTGAGGCTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004784.11 |
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| 3UTR CAA 72 bp | CTGTTTCTCGCCTTCTCCCTAACTTTTGTGCAGGGCTaGCACCTTGCTTCTAGACAGCGCCCCCTCCATCAC | + |
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Preference number: 4 (lower is better) Translates to: LFLAFSLTFVQG*HLASRQRPLHH Trigger: GTGATGGAGGGGGCGCTGTCTAGAAGCAAGGTGCAAGCCCTGCACAAAAGTTAGGGAGAAGGCGAGAAACAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000004784.11 |
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| CDS-3UTR CCA 90 bp | ACAGCCTCACTGTCCCACCAAGGACACCCATGTCCCCTGTCTGGTGGGTCAATCCATAGAGATGTCTCCTaGTACCATAGGCTGTCATGC | + |
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Preference number: 4 (lower is better) Translates to: TASLSHQGHPCPLSGGSIHRDVS*YHRLSC Trigger: GCATGACAGCCTATGGTACCAGGAGACATCTCTATG...GATTGACCCACCAGACAGGGGACATGGGTGTCCTTGGTGGGACAGTGAGGCTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004784.11 |
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| CDS-3UTR GCA 90 bp | ATTCAACTGTGTCTGTTTCTCGCCTTCTCCCTAACTTTTGTGCAGGGCTTGCACGGCCTTTCCAGCCAGTaGAAGCAGAGACACTTGCAC | + |
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Preference number: 4 (lower is better) Translates to: IQLCLFLAFSLTFVQGLHGLSSQ*KQRHLH Trigger: GTGCAAGTGTCTCTGCTTGCACTGGCTGGAAAGGCC...GTGCAAGCCCTGCACAAAAGTTAGGGAGAAGGCGAGAAACAGACACAGTTGAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004784.11 |
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| 3UTR CAA 72 bp | TGTGGAGGTCAGAGGACCATTTCCTGGAGTCTATTCTaGCCTACCATGATGTGGGACCTCAGGCAAAGACCA | + |
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Preference number: 4 (lower is better) Translates to: CGGQRTISWSLF*PTMMWDLRQRP Trigger: TGGTCTTTGCCTGAGGTCCCACATCATGGTAGGCAAGAATAGACTCCAGGAAATGGTCCTCTGACCTCCACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004784.11 |
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| 3UTR CAA 72 bp | TTTGTATCCTGTGCCATCTCCTGCCACCAGCCAGAATaGTACCACAGCCTCTGTGAGCTCATCTCCAAAGTA | + |
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Preference number: 4 (lower is better) Translates to: FVSCAISCHQPE*YHSLCELISKV Trigger: TACTTTGGAGATGAGCTCACAGAGGCTGTGGTACAATTCTGGCTGGTGGCAGGAGATGGCACAGGATACAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004784.11 |
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| 3UTR CAA 72 bp | AGACCAAGTTTAGGTCGGAAGGTTTGCACAAGGTCTTaGTATCCTGTGCCATCTCCTGCCACCAGCCAGAAT | + |
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Preference number: 4 (lower is better) Translates to: RPSLGRKVCTRS*YPVPSPATSQN Trigger: ATTCTGGCTGGTGGCAGGAGATGGCACAGGATACAAAGACCTTGTGCAAACCTTCCGACCTAAACTTGGTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004784.11 |
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| CDS-3UTR GCA 90 bp | ATCAATAGTTGCCTGGATTGTAGGCAAGATTCTCAGATGTCTCCTACTCTGGAAATGTCCACACCACTCTaGAGCCCCTTGGTCTTGGCC | + |
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Preference number: 4 (lower is better) Translates to: INSCLDCRQDSQMSPTLEMSTPL*SPLVLA Trigger: GGCCAAGACCAAGGGGCTGCAGAGTGGTGTGGACAT...TTCCAGAGTAGGAGACATCTGAGAATCTTGCCTACAATCCAGGCAACTATTGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004784.11 |
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| CDS-3UTR GCA 90 bp | ATCAATAGTTGCCTGGATTGTAGGCAAGATTCTCAGATGTCTCCTACTCTGGAACCAGCTTCGGAGTTCTaGTTCCTTTTGGGGGTCATA | + |
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Preference number: 4 (lower is better) Translates to: INSCLDCRQDSQMSPTLEPASEF*FLLGVI Trigger: TATGACCCCCAAAAGGAAGCAGAACTCCGAAGCTGG...TTCCAGAGTAGGAGACATCTGAGAATCTTGCCTACAATCCAGGCAACTATTGAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000004784.11 |
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| CDS-3UTR CAA 90 bp | CCCAAAGCCCACACAGGGCTGCTGATGCAGTGGGGGAGCTGGCATGCTGGGTGCTTCTGCATAGAGCGGTaGATTTTAGGGACGGAGCCT | + |
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Preference number: 5 (lower is better) Translates to: PKAHTGLLMQWGSWHAGCFCIER*ILGTEP Trigger: AGGCTCCGTCCCTAAAATCAACCGCTCTATGCAGAA...GCACCCAGCATGCCAGCTCCCCCACTGCATCAGCAGCCCTGTGTGGGCTTTGGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000004784.11 ENSMUST00000105374.2 |
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| CDS-3UTR CAA 90 bp | AACCCCAAAGCCCACACAGGGCTGCTGATGCAGTGGGGGAGCTGGCATGCTGGGTGCAAGCAGAGACACTaGCACCTGTGTCATGTTCCC | + |
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Preference number: 5 (lower is better) Translates to: NPKAHTGLLMQWGSWHAGCKQRH*HLCHVP Trigger: GGGAACATGACACAGGTGCAAGTGTCTCTGCTTGCA...CCCAGCATGCCAGCTCCCCCACTGCATCAGCAGCCCTGTGTGGGCTTTGGGGTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000004784.11 ENSMUST00000105374.2 |
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| CDS-3UTR CAA 90 bp | AGTTTCCCCACGGGGCACAGGAGGGTGAAGTCTGAGAGTCGTGGGAAAGCAAACTTCTGCATAGAGCGGTaGATTTTAGGGACGGAGCCT | + |
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Preference number: 5 (lower is better) Translates to: SFPTGHRRVKSESRGKANFCIER*ILGTEP Trigger: AGGCTCCGTCCCTAAAATCAACCGCTCTATGCAGAA...GTTTGCTTTCCCACGACTCTCAGACTTCACCCTCCTGTGCCCCGTGGGGAAACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000004784.11 |
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| CDS-3UTR CAA 90 bp | TATCTGTGGAGGTCAGAGGACCATTTCCTGGAGTCTATTCTTGCCTACCATGATTGCAAGCAGAGACACTaGCACCTGTGTCATGTTCCC | + |
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Preference number: 5 (lower is better) Translates to: YLWRSEDHFLESILAYHDCKQRH*HLCHVP Trigger: GGGAACATGACACAGGTGCAAGTGTCTCTGCTTGCA...ATCATGGTAGGCAAGAATAGACTCCAGGAAATGGTCCTCTGACCTCCACAGATA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004784.11 |
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| CDS CAA 90 bp | GCCAGCTTCCTCCTGGCAGTAGGCCAGGTACTCTGGGGCCTCGCCTaGGCCGTCACCCGCAGGAGCCCCGTCAGCTGCAGAGCCCTGTGG | + |
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Preference number: 6 (lower is better) Translates to: ASFLLAVGQVLWGLA*AVTRRSPVSCRALW Trigger: CCACAGGGCTCTGCAGCTGACGGGGCTCCTGCGGGTGACGGCCAAGGCGAGGCCCCAGAGTACCTGGCCTACTGCCAGGAGGAAGCTGGC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004784.11 ENSMUST00000105374.2 |
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| CDS CCA 72 bp | GTAGCCAGCTTCCTCCTGGCAGTAGGCCAGGTACTCTaGGGCCTCGCCTTGGCCGTCACCCGCAGGAGCCCC | + |
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Preference number: 6 (lower is better) Translates to: VASFLLAVGQVL*GLALAVTRRSP Trigger: GGGGCTCCTGCGGGTGACGGCCAAGGCGAGGCCCCAGAGTACCTGGCCTACTGCCAGGAGGAAGCTGGCTAC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004784.11 ENSMUST00000105374.2 |
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| CDS CAA 72 bp | CTCCTGGCAGTAGGCCAGGTACTCTGGGGCCTCGCCTaGGCCGTCACCCGCAGGAGCCCCGTCAGCTGCAGA | + |
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Preference number: 6 (lower is better) Translates to: LLAVGQVLWGLA*AVTRRSPVSCR Trigger: TCTGCAGCTGACGGGGCTCCTGCGGGTGACGGCCAAGGCGAGGCCCCAGAGTACCTGGCCTACTGCCAGGAG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004784.11 ENSMUST00000105374.2 |
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| CDS GCA 72 bp | CTCGCCTTGGCCGTCACCCGCAGGAGCCCCGTCAGCTaGAGAGCCCTGTGGGCAATACTTGGGATCGTAGAT | + |
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Preference number: 6 (lower is better) Translates to: LALAVTRRSPVS*RALWAILGIVD Trigger: ATCTACGATCCCAAGTATTGCCCACAGGGCTCTGCAGCTGACGGGGCTCCTGCGGGTGACGGCCAAGGCGAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004784.11 ENSMUST00000105374.2 |
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| CDS CAA 72 bp | GGTGCCCATCTTTCCAGCCAGTGCAAGCAGAGACACTaGCACCTGTGTCATGTTCCCGCTCTCGAACAGGTC | + |
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Preference number: 6 (lower is better) Translates to: GAHLSSQCKQRH*HLCHVPALEQV Trigger: GACCTGTTCGAGAGCGGGAACATGACACAGGTGCAAGTGTCTCTGCTTGCACTGGCTGGAAAGATGGGCACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105374.2 |
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| CDS GCA 72 bp | GTGCCCATCTTTCCAGCCAGTGCAAGCAGAGACACTTaGACCTGTGTCATGTTCCCGCTCTCGAACAGGTCA | + |
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Preference number: 6 (lower is better) Translates to: VPIFPASASRDT*TCVMFPLSNRS Trigger: TGACCTGTTCGAGAGCGGGAACATGACACAGGTGCAAGTGTCTCTGCTTGCACTGGCTGGAAAGATGGGCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105374.2 |
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