Pregenerated sensors for CNMD (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022025Ensembl transcript IDs: ENSMUST00000022603.8, ENSMUST00000165835.8
Found 75 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TTGAATATAAAATACTTTGTGGTCTCTTGGCATGGACATGCTCTATaGTTCTTTGGTTCTCAACTCTCATATCGATTCTTGCTTGGCAGT | + |
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Preference number: 1 (lower is better) Translates to: LNIKYFVVSWHGHAL*FFGSQLSYRFLLGS Trigger: ACTGCCAAGCAAGAATCGATATGAGAGTTGAGAACCAAAGAAGCATAGAGCATGTCCATGCCAAGAGACCACAAAGTATTTTATATTCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| 3UTR GCA 90 bp | AATTGTAGAGTTAAACTACCCTTTCAGCACATTTGCACACAGTGGTaGACAACAGCGTTTAGGATAACATTATTCAGGTTGAATATAAAA | + |
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Preference number: 1 (lower is better) Translates to: NCRVKLPFQHICTQW*TTAFRITLFRLNIK Trigger: TTTTATATTCAACCTGAATAATGTTATCCTAAACGCTGTTGTGCACCACTGTGTGCAAATGTGCTGAAAGGGTAGTTTAACTCTACAATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| 3UTR CCA 90 bp | AATAATTGTAGAGTTAAACTACCCTTTCAGCACATTTGCACACAGTaGTGCACAACAGCGTTTAGGATAACATTATTCAGGTTGAATATA | + |
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Preference number: 1 (lower is better) Translates to: NNCRVKLPFQHICTQ*CTTAFRITLFRLNI Trigger: TATATTCAACCTGAATAATGTTATCCTAAACGCTGTTGTGCACCACTGTGTGCAAATGTGCTGAAAGGGTAGTTTAACTCTACAATTATT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| 3UTR-3UTR GCA 90 bp | TGTAGAGTTAAACTACCCTTTCAGCACATTTGCACACAGTGGTGCACAACAGCGCTCTTGGCATGGACATaGTCTATGCTTCTTTGGTTC | + |
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Preference number: 2 (lower is better) Translates to: CRVKLPFQHICTQWCTTALLAWT*SMLLWF Trigger: GAACCAAAGAAGCATAGAGCATGTCCATGCCAAGAG...CGCTGTTGTGCACCACTGTGTGCAAATGTGCTGAAAGGGTAGTTTAACTCTACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| 3UTR CAA 90 bp | TGCACACAGTGGTGCACAACAGCGTTTAGGATAACATTATTCAGGTaGAATATAAAATACTTTGTGGTCTCTTGGCATGGACATGCTCTA | + |
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Preference number: 2 (lower is better) Translates to: CTQWCTTAFRITLFR*NIKYFVVSWHGHAL Trigger: TAGAGCATGTCCATGCCAAGAGACCACAAAGTATTTTATATTCAACCTGAATAATGTTATCCTAAACGCTGTTGTGCACCACTGTGTGCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| 3UTR-3UTR GCA 90 bp | ATAATAATTGTAGAGTTAAACTACCCTTTCAGCACATTTGCACACAGTGGTGCACTCTTGGCATGGACATaGTCTATGCTTCTTTGGTTC | + |
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Preference number: 2 (lower is better) Translates to: IIIVELNYPFSTFAHSGALLAWT*SMLLWF Trigger: GAACCAAAGAAGCATAGAGCATGTCCATGCCAAGAG...TGCACCACTGTGTGCAAATGTGCTGAAAGGGTAGTTTAACTCTACAATTATTAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| 3UTR GCA 72 bp | GTTAAACTACCCTTTCAGCACATTTGCACACAGTGGTaGACAACAGCGTTTAGGATAACATTATTCAGGTTG | + |
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Preference number: 3 (lower is better) Translates to: VKLPFQHICTQW*TTAFRITLFRL Trigger: CAACCTGAATAATGTTATCCTAAACGCTGTTGTGCACCACTGTGTGCAAATGTGCTGAAAGGGTAGTTTAAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| 3UTR CCA 72 bp | AGAGTTAAACTACCCTTTCAGCACATTTGCACACAGTaGTGCACAACAGCGTTTAGGATAACATTATTCAGG | + |
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Preference number: 3 (lower is better) Translates to: RVKLPFQHICTQ*CTTAFRITLFR Trigger: CCTGAATAATGTTATCCTAAACGCTGTTGTGCACCACTGTGTGCAAATGTGCTGAAAGGGTAGTTTAACTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| 3UTR GCA 72 bp | AAATACTTTGTGGTCTCTTGGCATGGACATGCTCTATaGTTCTTTGGTTCTCAACTCTCATATCGATTCTTG | + |
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Preference number: 3 (lower is better) Translates to: KYFVVSWHGHAL*FFGSQLSYRFL Trigger: CAAGAATCGATATGAGAGTTGAGAACCAAAGAAGCATAGAGCATGTCCATGCCAAGAGACCACAAAGTATTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| 3UTR GCA 72 bp | GAATATAAAATACTTTGTGGTCTCTTGGCATGGACATaGTCTATGCTTCTTTGGTTCTCAACTCTCATATCG | + |
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Preference number: 3 (lower is better) Translates to: EYKILCGLLAWT*SMLLWFSTLIS Trigger: CGATATGAGAGTTGAGAACCAAAGAAGCATAGAGCATGTCCATGCCAAGAGACCACAAAGTATTTTATATTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| 3UTR GCA 72 bp | AATAATTGTAGAGTTAAACTACCCTTTCAGCACATTTaGACACAGTGGTGCACAACAGCGTTTAGGATAACA | + |
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Preference number: 3 (lower is better) Translates to: NNCRVKLPFQHI*TQWCTTAFRIT Trigger: TGTTATCCTAAACGCTGTTGTGCACCACTGTGTGCAAATGTGCTGAAAGGGTAGTTTAACTCTACAATTATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| 3UTR CCA 72 bp | TTATTCAGGTTGAATATAAAATACTTTGTGGTCTCTTaGCATGGACATGCTCTATGCTTCTTTGGTTCTCAA | + |
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Preference number: 3 (lower is better) Translates to: LFRLNIKYFVVS*HGHALCFFGSQ Trigger: TTGAGAACCAAAGAAGCATAGAGCATGTCCATGCCAAGAGACCACAAAGTATTTTATATTCAACCTGAATAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS-3UTR TCA 90 bp | TACTTTGTGGTCTCTTGGCATGGACATGCTCTATGCTTCTTTGGTTCTCAACTCACCAGCTGCATGGCATaGCGACTCTGCAGGCCGAGC | + |
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Preference number: 4 (lower is better) Translates to: YFVVSWHGHALCFFGSQLTSCMA*RLCRPS Trigger: GCTCGGCCTGCAGAGTCGTCATGCCATGCAGCTGGT...GAGTTGAGAACCAAAGAAGCATAGAGCATGTCCATGCCAAGAGACCACAAAGTA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS-3UTR GCA 90 bp | AAACTACCCTTTCAGCACATTTGCACACAGTGGTGCACAACAGCGTTTAGGATAACACCATGCCCAAGATaGGGGCCACCCACCAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: KLPFQHICTQWCTTAFRITPCPR*GPPTSC Trigger: GCAGCTGGTGGGTGGCCCGCATCTTGGGCATGGTGT...TATCCTAAACGCTGTTGTGCACCACTGTGTGCAAATGTGCTGAAAGGGTAGTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS-3UTR GCA 90 bp | TACTTTGTGGTCTCTTGGCATGGACATGCTCTATGCTTCTTTGGTTCTCAACTCACACCATGCCCAAGATaGGGGCCACCCACCAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: YFVVSWHGHALCFFGSQLTPCPR*GPPTSC Trigger: GCAGCTGGTGGGTGGCCCGCATCTTGGGCATGGTGT...GAGTTGAGAACCAAAGAAGCATAGAGCATGTCCATGCCAAGAGACCACAAAGTA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS-3UTR CCA 90 bp | TTTGTGGTCTCTTGGCATGGACATGCTCTATGCTTCTTTGGTTCTCAACTCTCACTTGAGCAGCCGTGTTaGGCTCCCGGAGGGCTTCAC | + |
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Preference number: 4 (lower is better) Translates to: FVVSWHGHALCFFGSQLSLEQPC*APGGLH Trigger: GTGAAGCCCTCCGGGAGCCCAACACGGCTGCTCAAG...TGAGAGTTGAGAACCAAAGAAGCATAGAGCATGTCCATGCCAAGAGACCACAAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS-3UTR CCA 90 bp | CTTTGTGGTCTCTTGGCATGGACATGCTCTATGCTTCTTTGGTTCTCAACTCTCCTGTCCTTCACAGGCTaGTCCACGGCCACCCAAATC | + |
|
Preference number: 4 (lower is better) Translates to: LCGLLAWTCSMLLWFSTLLSFTG*STATQI Trigger: GATTTGGGTGGCCGTGGACCAGCCTGTGAAGGACAG...GAGAGTTGAGAACCAAAGAAGCATAGAGCATGTCCATGCCAAGAGACCACAAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS-3UTR GCA 90 bp | TTTGTGGTCTCTTGGCATGGACATGCTCTATGCTTCTTTGGTTCTCAACTCTCATGCCCACCTCAGGGATaGGAGCCTTCACCTGTGCTT | + |
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Preference number: 4 (lower is better) Translates to: FVVSWHGHALCFFGSQLSCPPQG*EPSPVL Trigger: AAGCACAGGTGAAGGCTCGCATCCCTGAGGTGGGCA...TGAGAGTTGAGAACCAAAGAAGCATAGAGCATGTCCATGCCAAGAGACCACAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS-3UTR TCA 90 bp | CTCTTGGCATGGACATGCTCTATGCTTCTTTGGTTCTCAACTCTCATATCGATTGTACCGCGCCAGAAATaGGGACCACAGCTCCTACCT | + |
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Preference number: 4 (lower is better) Translates to: LLAWTCSMLLWFSTLISIVPRQK*GPQLLP Trigger: AGGTAGGAGCTGTGGTCCTCATTTCTGGCGCGGTAC...AATCGATATGAGAGTTGAGAACCAAAGAAGCATAGAGCATGTCCATGCCAAGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS-3UTR TCA 90 bp | TTCAGGTTGAATATAAAATACTTTGTGGTCTCTTGGCATGGACATGCTCTATGCACCAGCTGCATGGCATaGCGACTCTGCAGGCCGAGC | + |
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Preference number: 4 (lower is better) Translates to: FRLNIKYFVVSWHGHALCTSCMA*RLCRPS Trigger: GCTCGGCCTGCAGAGTCGTCATGCCATGCAGCTGGT...GCATAGAGCATGTCCATGCCAAGAGACCACAAAGTATTTTATATTCAACCTGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS-3UTR GCA 90 bp | ACATGCTCTATGCTTCTTTGGTTCTCAACTCTCATATCGATTCTTGCTTGGCAGTGCCCACCTCAGGGATaGGAGCCTTCACCTGTGCTT | + |
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Preference number: 4 (lower is better) Translates to: TCSMLLWFSTLISILAWQCPPQG*EPSPVL Trigger: AAGCACAGGTGAAGGCTCGCATCCCTGAGGTGGGCA...CTGCCAAGCAAGAATCGATATGAGAGTTGAGAACCAAAGAAGCATAGAGCATGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS-3UTR CCA 90 bp | TATAAAATACTTTGTGGTCTCTTGGCATGGACATGCTCTATGCTTCTTTGGTTCCTTGAGCAGCCGTGTTaGGCTCCCGGAGGGCTTCAC | + |
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Preference number: 4 (lower is better) Translates to: YKILCGLLAWTCSMLLWFLEQPC*APGGLH Trigger: GTGAAGCCCTCCGGGAGCCCAACACGGCTGCTCAAG...GAACCAAAGAAGCATAGAGCATGTCCATGCCAAGAGACCACAAAGTATTTTATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS-3UTR TCA 90 bp | TGTAGAGTTAAACTACCCTTTCAGCACATTTGCACACAGTGGTGCACAACAGCGCCTTCACCTGTGCTTTaGTGTAGCACTTCTCTCCTC | + |
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Preference number: 4 (lower is better) Translates to: CRVKLPFQHICTQWCTTAPSPVL*CSTSLL Trigger: GAGGAGAGAAGTGCTACATCAAAGCACAGGTGAAGG...CGCTGTTGTGCACCACTGTGTGCAAATGTGCTGAAAGGGTAGTTTAACTCTACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS-3UTR GCA 90 bp | TACTTTGTGGTCTCTTGGCATGGACATGCTCTATGCTTCTTTGGTTCTCAACTCAGTTCAGAGATGCTCTaGTTGGTCACTGTGCCCACC | + |
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Preference number: 4 (lower is better) Translates to: YFVVSWHGHALCFFGSQLSSEML*LVTVPT Trigger: GGTGGGCACAGTGACCAAGCAGAGCATCTCTGAACT...GAGTTGAGAACCAAAGAAGCATAGAGCATGTCCATGCCAAGAGACCACAAAGTA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS-3UTR TCA 90 bp | TATAAAATACTTTGTGGTCTCTTGGCATGGACATGCTCTATGCTTCTTTGGTTCGTACCGCGCCAGAAATaGGGACCACAGCTCCTACCT | + |
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Preference number: 4 (lower is better) Translates to: YKILCGLLAWTCSMLLWFVPRQK*GPQLLP Trigger: AGGTAGGAGCTGTGGTCCTCATTTCTGGCGCGGTAC...GAACCAAAGAAGCATAGAGCATGTCCATGCCAAGAGACCACAAAGTATTTTATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS-3UTR GCA 90 bp | ATAAAATACTTTGTGGTCTCTTGGCATGGACATGCTCTATGCTTCTTTGGTTCTTCTGCTTGGTCACTGTaGCCACCTCAGGGATGCGAG | + |
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Preference number: 4 (lower is better) Translates to: IKYFVVSWHGHALCFFGSSAWSL*PPQGCE Trigger: CTCGCATCCCTGAGGTGGGCACAGTGACCAAGCAGA...AGAACCAAAGAAGCATAGAGCATGTCCATGCCAAGAGACCACAAAGTATTTTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS-3UTR GCA 90 bp | GACATGCTCTATGCTTCTTTGGTTCTCAACTCTCATATCGATTCTTGCTTGGCAAGTTCAGAGATGCTCTaGTTGGTCACTGTGCCCACC | + |
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Preference number: 4 (lower is better) Translates to: DMLYASLVLNSHIDSCLASSEML*LVTVPT Trigger: GGTGGGCACAGTGACCAAGCAGAGCATCTCTGAACT...TGCCAAGCAAGAATCGATATGAGAGTTGAGAACCAAAGAAGCATAGAGCATGTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS-3UTR CCA 90 bp | AGGTTGAATATAAAATACTTTGTGGTCTCTTGGCATGGACATGCTCTATGCTTCAGTAGAAGGCCCCGATaGCCCCGAAGAGCAGCAGTA | + |
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Preference number: 4 (lower is better) Translates to: RLNIKYFVVSWHGHALCFSRRPR*PRRAAV Trigger: TACTGCTGCTCTTCGGGGCCATCGGGGCCTTCTACT...GAAGCATAGAGCATGTCCATGCCAAGAGACCACAAAGTATTTTATATTCAACCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS-3UTR CCA 90 bp | TTCAGGTTGAATATAAAATACTTTGTGGTCTCTTGGCATGGACATGCTCTATGCCTGTCCTTCACAGGCTaGTCCACGGCCACCCAAATC | + |
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Preference number: 4 (lower is better) Translates to: FRLNIKYFVVSWHGHALCLSFTG*STATQI Trigger: GATTTGGGTGGCCGTGGACCAGCCTGTGAAGGACAG...GCATAGAGCATGTCCATGCCAAGAGACCACAAAGTATTTTATATTCAACCTGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS-3UTR CCA 90 bp | ACATGCTCTATGCTTCTTTGGTTCTCAACTCTCATATCGATTCTTGCTTGGCAGTCGAGGTTCGCTGTGTaGTCTTCTTGTGGTAGAGGG | + |
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Preference number: 4 (lower is better) Translates to: TCSMLLWFSTLISILAWQSRFAV*SSCGRG Trigger: CCCTCTACCACAAGAAGACCACACAGCGAACCTCGA...CTGCCAAGCAAGAATCGATATGAGAGTTGAGAACCAAAGAAGCATAGAGCATGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS-3UTR CCA 90 bp | ATTCAGGTTGAATATAAAATACTTTGTGGTCTCTTGGCATGGACATGCTCTATGCACCCACCAGCTGCATaGCATGACGACTCTGCAGGC | + |
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Preference number: 4 (lower is better) Translates to: IQVEYKILCGLLAWTCSMHPPAA*HDDSAG Trigger: GCCTGCAGAGTCGTCATGCCATGCAGCTGGTGGGTG...CATAGAGCATGTCCATGCCAAGAGACCACAAAGTATTTTATATTCAACCTGAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS-3UTR TCA 90 bp | GACATGCTCTATGCTTCTTTGGTTCTCAACTCTCATATCGATTCTTGCTTGGCAAAGGATTGTCAGGGTTaGAAGGTTCTGCGTCGTCCT | + |
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Preference number: 4 (lower is better) Translates to: DMLYASLVLNSHIDSCLAKDCQG*KVLRRP Trigger: AGGACGACGCAGAACCTTTCAACCCTGACAATCCTT...TGCCAAGCAAGAATCGATATGAGAGTTGAGAACCAAAGAAGCATAGAGCATGTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS-3UTR GCA 90 bp | CACATTTGCACACAGTGGTGCACAACAGCGTTTAGGATAACATTATTCAGGTTGGCGAGCCTTCACCTGTaGTTTGATGTAGCACTTCTC | + |
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Preference number: 4 (lower is better) Translates to: HICTQWCTTAFRITLFRLASLHL*FDVALL Trigger: GAGAAGTGCTACATCAAAGCACAGGTGAAGGCTCGC...CAACCTGAATAATGTTATCCTAAACGCTGTTGTGCACCACTGTGTGCAAATGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS-3UTR CCA 90 bp | ATTCAGGTTGAATATAAAATACTTTGTGGTCTCTTGGCATGGACATGCTCTATGAGTAGAAGGCCCCGATaGCCCCGAAGAGCAGCAGTA | + |
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Preference number: 4 (lower is better) Translates to: IQVEYKILCGLLAWTCSMSRRPR*PRRAAV Trigger: TACTGCTGCTCTTCGGGGCCATCGGGGCCTTCTACT...CATAGAGCATGTCCATGCCAAGAGACCACAAAGTATTTTATATTCAACCTGAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS-3UTR CCA 90 bp | ATAATTGTAGAGTTAAACTACCCTTTCAGCACATTTGCACACAGTGGTGCACAACAGAGATGCTCTGCTTaGTCACTGTGCCCACCTCAG | + |
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Preference number: 4 (lower is better) Translates to: IIVELNYPFSTFAHSGAQQRCSA*SLCPPQ Trigger: CTGAGGTGGGCACAGTGACCAAGCAGAGCATCTCTG...TTGTGCACCACTGTGTGCAAATGTGCTGAAAGGGTAGTTTAACTCTACAATTAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS-3UTR CCA 90 bp | TACTTTGTGGTCTCTTGGCATGGACATGCTCTATGCTTCTTTGGTTCTCAACTCCAGCAGATCCCTTCATaGTCCAGTCTAGGGTCAAAT | + |
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Preference number: 4 (lower is better) Translates to: YFVVSWHGHALCFFGSQLQQIPS*SSLGSN Trigger: ATTTGACCCTAGACTGGACCATGAAGGGATCTGCTG...GAGTTGAGAACCAAAGAAGCATAGAGCATGTCCATGCCAAGAGACCACAAAGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS-3UTR CCA 90 bp | TACTTTGTGGTCTCTTGGCATGGACATGCTCTATGCTTCTTTGGTTCTCAACTCATAGTAGCCTCCCAGTaGTTCACAGATCTTCTGGCA | + |
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Preference number: 4 (lower is better) Translates to: YFVVSWHGHALCFFGSQLIVASQ*FTDLLA Trigger: TGCCAGAAGATCTGTGAACCACTGGGAGGCTACTAT...GAGTTGAGAACCAAAGAAGCATAGAGCATGTCCATGCCAAGAGACCACAAAGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS-3UTR CCA 90 bp | GACATGCTCTATGCTTCTTTGGTTCTCAACTCTCATATCGATTCTTGCTTGGCACTCTTCGTAGTTAGCTaGCATGATCTTGCCTTCCAG | + |
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Preference number: 4 (lower is better) Translates to: DMLYASLVLNSHIDSCLALFVVS*HDLAFQ Trigger: CTGGAAGGCAAGATCATGCCAGCTAACTACGAAGAG...TGCCAAGCAAGAATCGATATGAGAGTTGAGAACCAAAGAAGCATAGAGCATGTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS-3UTR CCA 90 bp | ACATGCTCTATGCTTCTTTGGTTCTCAACTCTCATATCGATTCTTGCTTGGCAGCAGCAGATCCCTTCATaGTCCAGTCTAGGGTCAAAT | + |
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Preference number: 4 (lower is better) Translates to: TCSMLLWFSTLISILAWQQQIPS*SSLGSN Trigger: ATTTGACCCTAGACTGGACCATGAAGGGATCTGCTG...CTGCCAAGCAAGAATCGATATGAGAGTTGAGAACCAAAGAAGCATAGAGCATGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS-3UTR CCA 90 bp | CTCTTGGCATGGACATGCTCTATGCTTCTTTGGTTCTCAACTCTCATATCGATTATAGTAGCCTCCCAGTaGTTCACAGATCTTCTGGCA | + |
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Preference number: 4 (lower is better) Translates to: LLAWTCSMLLWFSTLISIIVASQ*FTDLLA Trigger: TGCCAGAAGATCTGTGAACCACTGGGAGGCTACTAT...AATCGATATGAGAGTTGAGAACCAAAGAAGCATAGAGCATGTCCATGCCAAGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS-3UTR CCA 90 bp | ATAATAATTGTAGAGTTAAACTACCCTTTCAGCACATTTGCACACAGTGGTGCATCGAGGTTCGCTGTGTaGTCTTCTTGTGGTAGAGGG | + |
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Preference number: 4 (lower is better) Translates to: IIIVELNYPFSTFAHSGASRFAV*SSCGRG Trigger: CCCTCTACCACAAGAAGACCACACAGCGAACCTCGA...TGCACCACTGTGTGCAAATGTGCTGAAAGGGTAGTTTAACTCTACAATTATTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS-3UTR TCA 90 bp | TTATTCAGGTTGAATATAAAATACTTTGTGGTCTCTTGGCATGGACATGCTCTACCTTCACCTGTGCTTTaGTGTAGCACTTCTCTCCTC | + |
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Preference number: 4 (lower is better) Translates to: LFRLNIKYFVVSWHGHALPSPVL*CSTSLL Trigger: GAGGAGAGAAGTGCTACATCAAAGCACAGGTGAAGG...TAGAGCATGTCCATGCCAAGAGACCACAAAGTATTTTATATTCAACCTGAATAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS-3UTR GCA 90 bp | TTATTCAGGTTGAATATAAAATACTTTGTGGTCTCTTGGCATGGACATGCTCTAGCGAGCCTTCACCTGTaGTTTGATGTAGCACTTCTC | + |
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Preference number: 4 (lower is better) Translates to: LFRLNIKYFVVSWHGHALASLHL*FDVALL Trigger: GAGAAGTGCTACATCAAAGCACAGGTGAAGGCTCGC...TAGAGCATGTCCATGCCAAGAGACCACAAAGTATTTTATATTCAACCTGAATAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS-3UTR CCA 90 bp | ATAATAATTGTAGAGTTAAACTACCCTTTCAGCACATTTGCACACAGTGGTGCACTCTTCGTAGTTAGCTaGCATGATCTTGCCTTCCAG | + |
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Preference number: 4 (lower is better) Translates to: IIIVELNYPFSTFAHSGALFVVS*HDLAFQ Trigger: CTGGAAGGCAAGATCATGCCAGCTAACTACGAAGAG...TGCACCACTGTGTGCAAATGTGCTGAAAGGGTAGTTTAACTCTACAATTATTAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS-3UTR CCA 90 bp | CTCTTGGCATGGACATGCTCTATGCTTCTTTGGTTCTCAACTCTCATATCGATTTGCGAAATTTGCTTTTaGATACATGGGCTTAAGCCA | + |
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Preference number: 4 (lower is better) Translates to: LLAWTCSMLLWFSTLISICEICF*IHGLKP Trigger: TGGCTTAAGCCCATGTATCCAAAAGCAAATTTCGCA...AATCGATATGAGAGTTGAGAACCAAAGAAGCATAGAGCATGTCCATGCCAAGAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165835.8 |
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| CDS-3UTR GCA 90 bp | AGGTTGAATATAAAATACTTTGTGGTCTCTTGGCATGGACATGCTCTATGCTTCGATTTCTGCGAAATTTaGTTTTGGATACATGGGCTT | + |
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Preference number: 4 (lower is better) Translates to: RLNIKYFVVSWHGHALCFDFCEI*FWIHGL Trigger: AAGCCCATGTATCCAAAAGCAAATTTCGCAGAAATC...GAAGCATAGAGCATGTCCATGCCAAGAGACCACAAAGTATTTTATATTCAACCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165835.8 |
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| 3UTR CAA 72 bp | TGGTGCACAACAGCGTTTAGGATAACATTATTCAGGTaGAATATAAAATACTTTGTGGTCTCTTGGCATGGA | + |
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Preference number: 4 (lower is better) Translates to: WCTTAFRITLFR*NIKYFVVSWHG Trigger: TCCATGCCAAGAGACCACAAAGTATTTTATATTCAACCTGAATAATGTTATCCTAAACGCTGTTGTGCACCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| 3UTR CAA 72 bp | ATTATTCAGGTTGAATATAAAATACTTTGTGGTCTCTaGGCATGGACATGCTCTATGCTTCTTTGGTTCTCA | + |
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Preference number: 4 (lower is better) Translates to: IIQVEYKILCGL*AWTCSMLLWFS Trigger: TGAGAACCAAAGAAGCATAGAGCATGTCCATGCCAAGAGACCACAAAGTATTTTATATTCAACCTGAATAAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS GCA 90 bp | CTGCTTGGTCACTGTGCCCACCTCAGGGATGCGAGCCTTCACCTGTaGTTTGATGTAGCACTTCTCTCCTCCAGCAAAACGGATCCCAGT | + |
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Preference number: 5 (lower is better) Translates to: LLGHCAHLRDASLHL*FDVALLSSSKTDPS Trigger: ACTGGGATCCGTTTTGCTGGAGGAGAGAAGTGCTACATCAAAGCACAGGTGAAGGCTCGCATCCCTGAGGTGGGCACAGTGACCAAGCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS GCA 90 bp | GTCCTGAACATTGGGTCTGGTTCCGTTACTCAGTCTTCCAGGGCCTaGGTTACCTCGAGGTTCGCTGTGTGGTCTTCTTGTGGTAGAGGG | + |
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Preference number: 5 (lower is better) Translates to: VLNIGSGSVTQSSRA*VTSRFAVWSSCGRG Trigger: CCCTCTACCACAAGAAGACCACACAGCGAACCTCGAGGTAACGCAGGCCCTGGAAGACTGAGTAACGGAACCAGACCCAATGTTCAGGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS CCA 90 bp | CTGGTCCACGGCCACCCAAATCAGCGAGTTCTCTTCGTAGTTAGCTaGCATGATCTTGCCTTCCAGTTCAGAGATGCTCTGCTTGGTCAC | + |
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Preference number: 5 (lower is better) Translates to: LVHGHPNQRVLFVVS*HDLAFQFRDALLGH Trigger: GTGACCAAGCAGAGCATCTCTGAACTGGAAGGCAAGATCATGCCAGCTAACTACGAAGAGAACTCGCTGATTTGGGTGGCCGTGGACCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS CCA 90 bp | GTTACTCAGTCTTCCAGGGCCTGCGTTACCTCGAGGTTCGCTGTGTaGTCTTCTTGTGGTAGAGGGAGCACTGTTTCTCACGACTTCTCT | + |
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Preference number: 5 (lower is better) Translates to: VTQSSRACVTSRFAV*SSCGRGSTVSHDFS Trigger: AGAGAAGTCGTGAGAAACAGTGCTCCCTCTACCACAAGAAGACCACACAGCGAACCTCGAGGTAACGCAGGCCCTGGAAGACTGAGTAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS GCA 90 bp | TTCTCCTTCCTGCTGGTGGTAAGGATTGTCAGGGTTGAAAGGTTCTaGGTCGTCCTGAACATTGGGTCTGGTTCCGTTACTCAGTCTTCC | + |
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Preference number: 5 (lower is better) Translates to: FSFLLVVRIVRVERF*VVLNIGSGSVTQSS Trigger: GGAAGACTGAGTAACGGAACCAGACCCAATGTTCAGGACGACGCAGAACCTTTCAACCCTGACAATCCTTACCACCAGCAGGAAGGAGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS-3UTR CAA 90 bp | AAACTACCCTTTCAGCACATTTGCACACAGTGGTGCACAACAGCGTTTAGGATAACCACAGCTCCTACCTaGAGCAGCCGTGTTGGGCTC | + |
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Preference number: 5 (lower is better) Translates to: KLPFQHICTQWCTTAFRITTAPT*SSRVGL Trigger: GAGCCCAACACGGCTGCTCAAGGTAGGAGCTGTGGT...TATCCTAAACGCTGTTGTGCACCACTGTGTGCAAATGTGCTGAAAGGGTAGTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS-3UTR CAA 90 bp | GGCATGGACATGCTCTATGCTTCTTTGGTTCTCAACTCTCATATCGATTCTTGCTCAGAGATGCTCTGCTaGGTCACTGTGCCCACCTCA | + |
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Preference number: 5 (lower is better) Translates to: GMDMLYASLVLNSHIDSCSEMLC*VTVPTS Trigger: TGAGGTGGGCACAGTGACCAAGCAGAGCATCTCTGA...GCAAGAATCGATATGAGAGTTGAGAACCAAAGAAGCATAGAGCATGTCCATGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS-3UTR CAA 90 bp | ACATGCTCTATGCTTCTTTGGTTCTCAACTCTCATATCGATTCTTGCTTGGCAGGGCCGAGCGGCATCCTaGGTAATTGTAAGGCCATGG | + |
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Preference number: 5 (lower is better) Translates to: TCSMLLWFSTLISILAWQGRAAS*VIVRPW Trigger: CCATGGCCTTACAATTACCAAGGATGCCGCTCGGCC...CTGCCAAGCAAGAATCGATATGAGAGTTGAGAACCAAAGAAGCATAGAGCATGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS CCA 90 bp | GTGGTAGAGGGAGCACTGTTTCTCACGACTTCTCTTCTCTCTCTCTaGATTTCTTTTGGATACATGGGCTTAAGCCAGAAAATCGGCAGG | + |
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Preference number: 5 (lower is better) Translates to: VVEGALFLTTSLLSL*ISFGYMGLSQKIGR Trigger: CCTGCCGATTTTCTGGCTTAAGCCCATGTATCCAAAAGAAATCCAGAGAGAGAGAAGAGAAGTCGTGAGAAACAGTGCTCCCTCTACCAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022603.8 |
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| CDS GCA 90 bp | GTTTCTCACGACTTCTCTTCTCTCTCTCTGGATTTCTGCGAAATTTaGTTTTGGATACATGGGCTTAAGCCAGAAAATCGGCAGGTCGCC | + |
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Preference number: 5 (lower is better) Translates to: VSHDFSSLSLDFCEI*FWIHGLKPENRQVA Trigger: GGCGACCTGCCGATTTTCTGGCTTAAGCCCATGTATCCAAAAGCAAATTTCGCAGAAATCCAGAGAGAGAGAAGAGAAGTCGTGAGAAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165835.8 |
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| CDS-3UTR CAA 90 bp | AATATAAAATACTTTGTGGTCTCTTGGCATGGACATGCTCTATGCTTCTTTGGTACCACAGCTCCTACCTaGAGCAGCCGTGTTGGGCTC | + |
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Preference number: 5 (lower is better) Translates to: NIKYFVVSWHGHALCFFGTTAPT*SSRVGL Trigger: GAGCCCAACACGGCTGCTCAAGGTAGGAGCTGTGGT...ACCAAAGAAGCATAGAGCATGTCCATGCCAAGAGACCACAAAGTATTTTATATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS-3UTR CAA 90 bp | GAATATAAAATACTTTGTGGTCTCTTGGCATGGACATGCTCTATGCTTCTTTGGGGCCGAGCGGCATCCTaGGTAATTGTAAGGCCATGG | + |
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Preference number: 5 (lower is better) Translates to: EYKILCGLLAWTCSMLLWGRAAS*VIVRPW Trigger: CCATGGCCTTACAATTACCAAGGATGCCGCTCGGCC...CCAAAGAAGCATAGAGCATGTCCATGCCAAGAGACCACAAAGTATTTTATATTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS-3UTR CAA 90 bp | AAACTACCCTTTCAGCACATTTGCACACAGTGGTGCACAACAGCGTTTAGGATATTAGCTGGCATGATCTaGCCTTCCAGTTCAGAGATG | + |
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Preference number: 5 (lower is better) Translates to: KLPFQHICTQWCTTAFRILAGMI*PSSSEM Trigger: CATCTCTGAACTGGAAGGCAAGATCATGCCAGCTAA...TATCCTAAACGCTGTTGTGCACCACTGTGTGCAAATGTGCTGAAAGGGTAGTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS-3UTR CAA 90 bp | TACTTTGTGGTCTCTTGGCATGGACATGCTCTATGCTTCTTTGGTTCTCAACTCTTAGCTGGCATGATCTaGCCTTCCAGTTCAGAGATG | + |
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Preference number: 5 (lower is better) Translates to: YFVVSWHGHALCFFGSQLLAGMI*PSSSEM Trigger: CATCTCTGAACTGGAAGGCAAGATCATGCCAGCTAA...GAGTTGAGAACCAAAGAAGCATAGAGCATGTCCATGCCAAGAGACCACAAAGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS-3UTR CAA 90 bp | TTTGTGGTCTCTTGGCATGGACATGCTCTATGCTTCTTTGGTTCTCAACTCTCACAGCATCTATTTCCATaGACCCATCTTGTAGTTTCC | + |
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Preference number: 5 (lower is better) Translates to: FVVSWHGHALCFFGSQLSQHLFP*THLVVS Trigger: GGAAACTACAAGATGGGTCAATGGAAATAGATGCTG...TGAGAGTTGAGAACCAAAGAAGCATAGAGCATGTCCATGCCAAGAGACCACAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS-3UTR CAA 90 bp | TTTGTGGTCTCTTGGCATGGACATGCTCTATGCTTCTTTGGTTCTCAACTCTCAGGATTTCTGCGAAATTaGCTTTTGGATACATGGGCT | + |
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Preference number: 5 (lower is better) Translates to: FVVSWHGHALCFFGSQLSGFLRN*LLDTWA Trigger: AGCCCATGTATCCAAAAGCAAATTTCGCAGAAATCC...TGAGAGTTGAGAACCAAAGAAGCATAGAGCATGTCCATGCCAAGAGACCACAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165835.8 |
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| CDS-3UTR CAA 90 bp | AATATAAAATACTTTGTGGTCTCTTGGCATGGACATGCTCTATGCTTCTTTGGTCAGCATCTATTTCCATaGACCCATCTTGTAGTTTCC | + |
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Preference number: 5 (lower is better) Translates to: NIKYFVVSWHGHALCFFGQHLFP*THLVVS Trigger: GGAAACTACAAGATGGGTCAATGGAAATAGATGCTG...ACCAAAGAAGCATAGAGCATGTCCATGCCAAGAGACCACAAAGTATTTTATATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS CAA 90 bp | CCACCAGCTGCATGGCATGACGACTCTGCAGGCCGAGCGGCATCCTaGGTAATTGTAAGGCCATGGATAGTAGCCTCCCAGTGGTTCACA | + |
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Preference number: 6 (lower is better) Translates to: PPAAWHDDSAGRAAS*VIVRPWIVASQWFT Trigger: TGTGAACCACTGGGAGGCTACTATCCATGGCCTTACAATTACCAAGGATGCCGCTCGGCCTGCAGAGTCGTCATGCCATGCAGCTGGTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS CAA 72 bp | GCATGGCATGACGACTCTGCAGGCCGAGCGGCATCCTaGGTAATTGTAAGGCCATGGATAGTAGCCTCCCAG | + |
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Preference number: 6 (lower is better) Translates to: AWHDDSAGRAAS*VIVRPWIVASQ Trigger: CTGGGAGGCTACTATCCATGGCCTTACAATTACCAAGGATGCCGCTCGGCCTGCAGAGTCGTCATGCCATGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS TCA 72 bp | TGCCCACCTCAGGGATGCGAGCCTTCACCTGTGCTTTaGTGTAGCACTTCTCTCCTCCAGCAAAACGGATCC | + |
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Preference number: 6 (lower is better) Translates to: CPPQGCEPSPVL*CSTSLLQQNGS Trigger: GGATCCGTTTTGCTGGAGGAGAGAAGTGCTACATCAAAGCACAGGTGAAGGCTCGCATCCCTGAGGTGGGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS GCA 72 bp | CACTGTGCCCACCTCAGGGATGCGAGCCTTCACCTGTaGTTTGATGTAGCACTTCTCTCCTCCAGCAAAACG | + |
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Preference number: 6 (lower is better) Translates to: HCAHLRDASLHL*FDVALLSSSKT Trigger: CGTTTTGCTGGAGGAGAGAAGTGCTACATCAAAGCACAGGTGAAGGCTCGCATCCCTGAGGTGGGCACAGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS GCA 72 bp | ATTGGGTCTGGTTCCGTTACTCAGTCTTCCAGGGCCTaGGTTACCTCGAGGTTCGCTGTGTGGTCTTCTTGT | + |
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Preference number: 6 (lower is better) Translates to: IGSGSVTQSSRA*VTSRFAVWSSC Trigger: ACAAGAAGACCACACAGCGAACCTCGAGGTAACGCAGGCCCTGGAAGACTGAGTAACGGAACCAGACCCAAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS GCA 72 bp | GTTCACAGATCTTCTGGCAGTGGGTGTAGCTCCGCCTaGATTCTATACAGCAGATCCCTTCATGGTCCAGTC | + |
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Preference number: 6 (lower is better) Translates to: VHRSSGSGCSSA*ILYSRSLHGPV Trigger: GACTGGACCATGAAGGGATCTGCTGTATAGAATGCAGGCGGAGCTACACCCACTGCCAGAAGATCTGTGAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS GCA 72 bp | CTGCTGGTGGTAAGGATTGTCAGGGTTGAAAGGTTCTaGGTCGTCCTGAACATTGGGTCTGGTTCCGTTACT | + |
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Preference number: 6 (lower is better) Translates to: LLVVRIVRVERF*VVLNIGSGSVT Trigger: AGTAACGGAACCAGACCCAATGTTCAGGACGACGCAGAACCTTTCAACCCTGACAATCCTTACCACCAGCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS CCA 72 bp | GGCCACCCAAATCAGCGAGTTCTCTTCGTAGTTAGCTaGCATGATCTTGCCTTCCAGTTCAGAGATGCTCTG | + |
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Preference number: 6 (lower is better) Translates to: GHPNQRVLFVVS*HDLAFQFRDAL Trigger: CAGAGCATCTCTGAACTGGAAGGCAAGATCATGCCAGCTAACTACGAAGAGAACTCGCTGATTTGGGTGGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022603.8 ENSMUST00000165835.8 |
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| CDS CCA 72 bp | GGAGCACTGTTTCTCACGACTTCTCTTCTCTCTCTCTaGATTTCTTTTGGATACATGGGCTTAAGCCAGAAA | + |
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Preference number: 6 (lower is better) Translates to: GALFLTTSLLSL*ISFGYMGLSQK Trigger: TTTCTGGCTTAAGCCCATGTATCCAAAAGAAATCCAGAGAGAGAGAAGAGAAGTCGTGAGAAACAGTGCTCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022603.8 |
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| CDS GCA 72 bp | GACTTCTCTTCTCTCTCTCTGGATTTCTGCGAAATTTaGTTTTGGATACATGGGCTTAAGCCAGAAAATCGG | + |
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Preference number: 6 (lower is better) Translates to: DFSSLSLDFCEI*FWIHGLKPENR Trigger: CCGATTTTCTGGCTTAAGCCCATGTATCCAAAAGCAAATTTCGCAGAAATCCAGAGAGAGAGAAGAGAAGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165835.8 |
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