RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CNKSR2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025658

Ensembl transcript IDs: ENSMUST00000026750.15, ENSMUST00000112513.2

Found 288 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TTATTGGTGCTGATCCCTCTCTTCCTGATGTCAGGAGAACACAACTaGGGTGTCGCCACAGAGCCCTTCCCCACGCAAGACCCTTTTACC +
Preference number: 1 (lower is better)
Translates to: LLVLIPLFLMSGEHN*GVATEPFPTQDPFT
Trigger: GGTAAAAGGGTCTTGCGTGGGGAAGGGCTCTGTGGCGACACCTCAGTTGTGTTCTCCTGACATCAGGAAGAGAGGGATCAGCACCAATAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
3UTR GCA 90 bp TCACAAAGCTTTGCCCTGATACGCCGCGCAGTGCTCGCATGGGTTTaGAATCGTGCCTCCCTTAACCAGTCGGCACAAGTTAATAGACTC +
Preference number: 1 (lower is better)
Translates to: SQSFALIRRAVLAWV*NRASLNQSAQVNRL
Trigger: GAGTCTATTAACTTGTGCCGACTGGTTAAGGGAGGCACGATTGCAAACCCATGCGAGCACTGCGCGGCGTATCAGGGCAAAGCTTTGTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
3UTR CCA 90 bp AGCATCTCACAAAGCTTTGCCCTGATACGCCGCGCAGTGCTCGCATaGGTTTGCAATCGTGCCTCCCTTAACCAGTCGGCACAAGTTAAT +
Preference number: 1 (lower is better)
Translates to: SISQSFALIRRAVLA*VCNRASLNQSAQVN
Trigger: ATTAACTTGTGCCGACTGGTTAAGGGAGGCACGATTGCAAACCCATGCGAGCACTGCGCGGCGTATCAGGGCAAAGCTTTGTGAGATGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
3UTR TCA 90 bp TCAATTTTGGTCTCAGTTACAAAAGCATCTCACAAAGCTTTGCCCTaGTACGCCGCGCAGTGCTCGCATGGGTTTGCAATCGTGCCTCCC +
Preference number: 1 (lower is better)
Translates to: SILVSVTKASHKALP*YAAQCSHGFAIVPP
Trigger: GGGAGGCACGATTGCAAACCCATGCGAGCACTGCGCGGCGTATCAGGGCAAAGCTTTGTGAGATGCTTTTGTAACTGAGACCAAAATTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
3UTR GCA 90 bp TATGTTCAATTTTGGTCTCAGTTACAAAAGCATCTCACAAAGCTTTaGCCTGATACGCCGCGCAGTGCTCGCATGGGTTTGCAATCGTGC +
Preference number: 1 (lower is better)
Translates to: YVQFWSQLQKHLTKL*PDTPRSARMGLQSC
Trigger: GCACGATTGCAAACCCATGCGAGCACTGCGCGGCGTATCAGGGCAAAGCTTTGTGAGATGCTTTTGTAACTGAGACCAAAATTGAACATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
3UTR GCA 90 bp AAGTCTGTTTTCTGTTATAAACATCAAGGACGAGGCCATTTTAGTTaGTTGCAAGAGGTTGATGTTGAGTCTGCGCCGTGCCACCTCTCT +
Preference number: 1 (lower is better)
Translates to: KSVFCYKHQGRGHFS*LQEVDVESAPCHLS
Trigger: AGAGAGGTGGCACGGCGCAGACTCAACATCAACCTCTTGCAAGCAACTAAAATGGCCTCGTCCTTGATGTTTATAACAGAAAACAGACTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
3UTR TCA 90 bp CCACCAACTGCCTGTTGTTTGCAGGCTGTTTGTCCACTGTATACGTaGCGCATCCATCATGTACAAATAGTTTTAAGTGAAGATACACCA +
Preference number: 1 (lower is better)
Translates to: PPTACCLQAVCPLYT*RIHHVQIVLSEDTP
Trigger: TGGTGTATCTTCACTTAAAACTATTTGTACATGATGGATGCGTCACGTATACAGTGGACAAACAGCCTGCAAACAACAGGCAGTTGGTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
3UTR CCA 90 bp AAAAGGAGAAAGTTAGGAGTTTTCACTGAGGAATCTAATAAAGCCTaGCATGAGCAATTTCCTTCATTCGTGTCACTGAAAGCAGTCTGC +
Preference number: 1 (lower is better)
Translates to: KRRKLGVFTEESNKA*HEQFPSFVSLKAVC
Trigger: GCAGACTGCTTTCAGTGACACGAATGAAGGAAATTGCTCATGCCAGGCTTTATTAGATTCCTCAGTGAAAACTCCTAACTTTCTCCTTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
3UTR TCA 90 bp GCAATTTCCTTCATTCGTGTCACTGAAAGCAGTCTGCCTTACACCTaGATATGCTTTAATAATAGAATAAACATAGTGAGTTTCAGCGCA +
Preference number: 1 (lower is better)
Translates to: AISFIRVTESSLPYT*ICFNNRINIVSFSA
Trigger: TGCGCTGAAACTCACTATGTTTATTCTATTATTAAAGCATATTCAGGTGTAAGGCAGACTGCTTTCAGTGACACGAATGAAGGAAATTGC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
3UTR-3UTR GCA 90 bp CAGGAGAACACAACTGAGGTGTCGCCACAGAGCCCTTCCCCACGCAAGACCCTTTTCCAATGGGTTGAGTaGCAACAGAAGTGGATCCGA +
Preference number: 2 (lower is better)
Translates to: QENTTEVSPQSPSPRKTLFQWVE*QQKWIR
Trigger: TCGGATCCACTTCTGTTGGCACTCAACCCATTGGAA...AAGGGTCTTGCGTGGGGAAGGGCTCTGTGGCGACACCTCAGTTGTGTTCTCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
3UTR-3UTR CCA 90 bp AACACAACTGAGGTGTCGCCACAGAGCCCTTCCCCACGCAAGACCCTTTTACCCGAAGTGGATCCGATTTaGCATGGAGAGGTTCTACCA +
Preference number: 2 (lower is better)
Translates to: NTTEVSPQSPSPRKTLLPEVDPI*HGEVLP
Trigger: TGGTAGAACCTCTCCATGCCAAATCGGATCCACTTC...GGGTAAAAGGGTCTTGCGTGGGGAAGGGCTCTGTGGCGACACCTCAGTTGTGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
3UTR-3UTR CCA 90 bp GACGAGGCCATTTTAGTTGCTTGCAAGAGGTTGATGTTGAGTCTGCGCCGTGCCGAGTGCCAACAGAAGTaGATCCGATTTGGCATGGAG +
Preference number: 2 (lower is better)
Translates to: DEAILVACKRLMLSLRRAECQQK*IRFGME
Trigger: CTCCATGCCAAATCGGATCCACTTCTGTTGGCACTC...GGCACGGCGCAGACTCAACATCAACCTCTTGCAAGCAACTAAAATGGCCTCGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
3UTR-3UTR CCA 90 bp GACGAGGCCATTTTAGTTGCTTGCAAGAGGTTGATGTTGAGTCTGCGCCGTGCCGGATCCGATTTGGCATaGAGAGGTTCTACCAACTCT +
Preference number: 2 (lower is better)
Translates to: DEAILVACKRLMLSLRRAGSDLA*RGSTNS
Trigger: AGAGTTGGTAGAACCTCTCCATGCCAAATCGGATCC...GGCACGGCGCAGACTCAACATCAACCTCTTGCAAGCAACTAAAATGGCCTCGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
3UTR CAA 90 bp AAGCTGCATACTAGTAACAGAGCTAGCCTTCCCACCAACTGCCTGTaGTTTGCAGGCTGTTTGTCCACTGTATACGTGACGCATCCATCA +
Preference number: 2 (lower is better)
Translates to: KLHTSNRASLPTNCL*FAGCLSTVYVTHPS
Trigger: TGATGGATGCGTCACGTATACAGTGGACAAACAGCCTGCAAACAACAGGCAGTTGGTGGGAAGGCTAGCTCTGTTACTAGTATGCAGCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
3UTR-3UTR TCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGAACTACCTTATCCACTaGTTCAGAGTACCGTCAGGT +
Preference number: 2 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGNYLIH*FRVPSG
Trigger: ACCTGACGGTACTCTGAATCAGTGGATAAGGTAGTT...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
3UTR CAA 90 bp TCTGTTTTCTGTTATAAACATCAAGGACGAGGCCATTTTAGTTGCTaGCAAGAGGTTGATGTTGAGTCTGCGCCGTGCCACCTCTCTTCC +
Preference number: 2 (lower is better)
Translates to: SVFCYKHQGRGHFSC*QEVDVESAPCHLSS
Trigger: GGAAGAGAGGTGGCACGGCGCAGACTCAACATCAACCTCTTGCAAGCAACTAAAATGGCCTCGTCCTTGATGTTTATAACAGAAAACAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
3UTR CAA 90 bp AACAGAGCTAGCCTTCCCACCAACTGCCTGTTGTTTGCAGGCTGTTaGTCCACTGTATACGTGACGCATCCATCATGTACAAATAGTTTT +
Preference number: 2 (lower is better)
Translates to: NRASLPTNCLLFAGC*STVYVTHPSCTNSF
Trigger: AAAACTATTTGTACATGATGGATGCGTCACGTATACAGTGGACAAACAGCCTGCAAACAACAGGCAGTTGGTGGGAAGGCTAGCTCTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
3UTR CAA 90 bp AACATCAAGGACGAGGCCATTTTAGTTGCTTGCAAGAGGTTGATGTaGAGTCTGCGCCGTGCCACCTCTCTTCCATCTAAATTCTCTAAA +
Preference number: 2 (lower is better)
Translates to: NIKDEAILVACKRLM*SLRRATSLPSKFSK
Trigger: TTTAGAGAATTTAGATGGAAGAGAGGTGGCACGGCGCAGACTCAACATCAACCTCTTGCAAGCAACTAAAATGGCCTCGTCCTTGATGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
3UTR CAA 90 bp GTTATAAACATCAAGGACGAGGCCATTTTAGTTGCTTGCAAGAGGTaGATGTTGAGTCTGCGCCGTGCCACCTCTCTTCCATCTAAATTC +
Preference number: 2 (lower is better)
Translates to: VINIKDEAILVACKR*MLSLRRATSLPSKF
Trigger: GAATTTAGATGGAAGAGAGGTGGCACGGCGCAGACTCAACATCAACCTCTTGCAAGCAACTAAAATGGCCTCGTCCTTGATGTTTATAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
3UTR-3UTR TCA 90 bp TTGATGTTGAGTCTGCGCCGTGCCACCTCTCTTCCATCTAAATTCTCTAAACATGTGATTCCAATGGGTTaGGTGCCAACAGAAGTGGAT +
Preference number: 2 (lower is better)
Translates to: LMLSLRRATSLPSKFSKHVIPMG*VPTEVD
Trigger: ATCCACTTCTGTTGGCACTCAACCCATTGGAATCAC...ATGTTTAGAGAATTTAGATGGAAGAGAGGTGGCACGGCGCAGACTCAACATCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
3UTR-3UTR GCA 90 bp CTGCCCCTCTTAATATCCCTTTATGGAGGCCCCAAATCCACAACACTTGATGATGCCATTTTAGTTGCTTaGAAGAGGTTGATGTTGAGT +
Preference number: 2 (lower is better)
Translates to: LPLLISLYGGPKSTTLDDAILVA*KRLMLS
Trigger: ACTCAACATCAACCTCTTGCAAGCAACTAAAATGGC...ATCATCAAGTGTTGTGGATTTGGGGCCTCCATAAAGGGATATTAAGAGGGGCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
3UTR CAA 90 bp CTAAATTCTCTAAACATTAGCTTATCAATCTGTGATTCCAATGGGTaGAGTGCCAACAGAAGTGGATCCGATTTGGCATGGAGAGGTTCT +
Preference number: 2 (lower is better)
Translates to: LNSLNISLSICDSNG*SANRSGSDLAWRGS
Trigger: AGAACCTCTCCATGCCAAATCGGATCCACTTCTGTTGGCACTCAACCCATTGGAATCACAGATTGATAAGCTAATGTTTAGAGAATTTAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
3UTR-3UTR TCA 90 bp CTCATTCCAGCTTATGAGGCAACATCACTTCTATGTAAGTGCCAAGGAAAAGGATACCGTGTTCCATCTTaGTTGGTTTTGATCTTATGC +
Preference number: 2 (lower is better)
Translates to: LIPAYEATSLLCKCQGKGYRVPS*LVLILC
Trigger: GCATAAGATCAAAACCAATCAAGATGGAACACGGTA...TCCTTTTCCTTGGCACTTACATAGAAGTGATGTTGCCTCATAAGCTGGAATGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
3UTR-3UTR TCA 90 bp ACAGGTATTCATATTATGCAATACCACACACTGCAGCAACAGGAAGAAAAACATCTTCATTCGTGTCACTaGAAGCAGTCTGCCTTACAC +
Preference number: 2 (lower is better)
Translates to: TGIHIMQYHTLQQQEEKHLHSCH*KQSALH
Trigger: GTGTAAGGCAGACTGCTTTCAGTGACACGAATGAAG...ATGTTTTTCTTCCTGTTGCTGCAGTGTGTGGTATTGCATAATATGAATACCTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
3UTR-3UTR GCA 90 bp CAAATTGTGACTTGTATATTATGCAGCCACACACTAAAAAGCAGCAAGTCACTTAACTCCCTGAATGACTaGCATCCTCTGCTCCTTAGT +
Preference number: 2 (lower is better)
Translates to: QIVTCILCSHTLKSSKSLNSLND*HPLLLS
Trigger: ACTAAGGAGCAGAGGATGGCAGTCATTCAGGGAGTT...AAGTGACTTGCTGCTTTTTAGTGTGTGGCTGCATAATATACAAGTCACAATTTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
3UTR-3UTR TCA 90 bp CAAATTGTGACTTGTATATTATGCAGCCACACACTAAAAAGCAGCAAGTCACTTAATGTAATAACTCCCTaGATGACTGCCATCCTCTGC +
Preference number: 2 (lower is better)
Translates to: QIVTCILCSHTLKSSKSLNVITP*MTAILC
Trigger: GCAGAGGATGGCAGTCATTCAGGGAGTTATTACATT...AAGTGACTTGCTGCTTTTTAGTGTGTGGCTGCATAATATACAAGTCACAATTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
3UTR-3UTR GCA 90 bp ATTGGTTTTGATCTTATGCTAGTCCCACTGTCGAAAGCTCGAATTCTTCTTAAGCGAGGCCATTTTAGTTaGTTGCAAGAGGTTGATGTT +
Preference number: 2 (lower is better)
Translates to: IGFDLMLVPLSKARILLKRGHFS*LQEVDV
Trigger: AACATCAACCTCTTGCAAGCAACTAAAATGGCCTCG...CTTAAGAAGAATTCGAGCTTTCGACAGTGGGACTAGCATAAGATCAAAACCAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
3UTR-3UTR TCA 90 bp CAAATTGTGACTTGTATATTATGCAGCCACACACTAAAAAGCAGCAAGTCACTTAAGGATGTCTGCACCTaGAAAAATTGTGATTTACGG +
Preference number: 2 (lower is better)
Translates to: QIVTCILCSHTLKSSKSLKDVCT*KNCDLR
Trigger: CCGTAAATCACAATTTTTTCAGGTGCAGACATCCTT...AAGTGACTTGCTGCTTTTTAGTGTGTGGCTGCATAATATACAAGTCACAATTTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
3UTR-3UTR TCA 90 bp CAAATTGTGACTTGTATATTATGCAGCCACACACTAAAAAGCAGCAAGTCACTTAGCTGCCTTTCTGGGTaGGTTAAGTCTGTTTTAAAA +
Preference number: 2 (lower is better)
Translates to: QIVTCILCSHTLKSSKSLSCLSG*VKSVLK
Trigger: TTTTAAAACAGACTTAACTCACCCAGAAAGGCAGCT...AAGTGACTTGCTGCTTTTTAGTGTGTGGCTGCATAATATACAAGTCACAATTTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
3UTR-3UTR GCA 90 bp CAAATTGTGACTTGTATATTATGCAGCCACACACTAAAAAGCAGCAAGTCACTTCATTATTTTCTCTACTaGAACTTCTATCTGCCACGA +
Preference number: 2 (lower is better)
Translates to: QIVTCILCSHTLKSSKSLHYFLY*NFYLPR
Trigger: TCGTGGCAGATAGAAGTTGCAGTAGAGAAAATAATG...AAGTGACTTGCTGCTTTTTAGTGTGTGGCTGCATAATATACAAGTCACAATTTG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
3UTR-3UTR GCA 90 bp CAAATTGTGACTTGTATATTATGCAGCCACACACTAAAAAGCAGCAAGTCACTTCTTTTCGTATGTTCATaGTCTTCTAGTTTGCTTAAC +
Preference number: 2 (lower is better)
Translates to: QIVTCILCSHTLKSSKSLLFVCS*SSSLLN
Trigger: GTTAAGCAAACTAGAAGAGCATGAACATACGAAAAG...AAGTGACTTGCTGCTTTTTAGTGTGTGGCTGCATAATATACAAGTCACAATTTG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
3UTR-3UTR CCA 90 bp CAAATTGTGACTTGTATATTATGCAGCCACACACTAAAAAGCAGCAAGTCACTTAAAATGCCTGGAAAATaGACTCATTTCAGTGTATAC +
Preference number: 2 (lower is better)
Translates to: QIVTCILCSHTLKSSKSLKMPGK*THFSVY
Trigger: GTATACACTGAAATGAGTCCATTTTCCAGGCATTTT...AAGTGACTTGCTGCTTTTTAGTGTGTGGCTGCATAATATACAAGTCACAATTTG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
3UTR-3UTR CCA 90 bp CAAATTGTGACTTGTATATTATGCAGCCACACACTAAAAAGCAGCAAGTCACTTAAATTGCAAAATGCCTaGAAAATGGACTCATTTCAG +
Preference number: 2 (lower is better)
Translates to: QIVTCILCSHTLKSSKSLKLQNA*KMDSFQ
Trigger: CTGAAATGAGTCCATTTTCCAGGCATTTTGCAATTT...AAGTGACTTGCTGCTTTTTAGTGTGTGGCTGCATAATATACAAGTCACAATTTG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
3UTR CCA 72 bp CAAAGCTTTGCCCTGATACGCCGCGCAGTGCTCGCATaGGTTTGCAATCGTGCCTCCCTTAACCAGTCGGCA +
Preference number: 3 (lower is better)
Translates to: QSFALIRRAVLA*VCNRASLNQSA
Trigger: TGCCGACTGGTTAAGGGAGGCACGATTGCAAACCCATGCGAGCACTGCGCGGCGTATCAGGGCAAAGCTTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
3UTR-3UTR CAA 90 bp CAGGAGAACACAACTGAGGTGTCGCCACAGAGCCCTTCCCCACGCAAGACCCTTGTTGCTTGCAAGAGGTaGATGTTGAGTCTGCGCCGT +
Preference number: 3 (lower is better)
Translates to: QENTTEVSPQSPSPRKTLVACKR*MLSLRR
Trigger: ACGGCGCAGACTCAACATCAACCTCTTGCAAGCAAC...AAGGGTCTTGCGTGGGGAAGGGCTCTGTGGCGACACCTCAGTTGTGTTCTCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
3UTR TCA 72 bp CTGATCCCTCTCTTCCTGATGTCAGGAGAACACAACTaGGGTGTCGCCACAGAGCCCTTCCCCACGCAAGAC +
Preference number: 3 (lower is better)
Translates to: LIPLFLMSGEHN*GVATEPFPTQD
Trigger: GTCTTGCGTGGGGAAGGGCTCTGTGGCGACACCTCAGTTGTGTTCTCCTGACATCAGGAAGAGAGGGATCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
3UTR GCA 72 bp TTTTGGTCTCAGTTACAAAAGCATCTCACAAAGCTTTaGCCTGATACGCCGCGCAGTGCTCGCATGGGTTTG +
Preference number: 3 (lower is better)
Translates to: FWSQLQKHLTKL*PDTPRSARMGL
Trigger: CAAACCCATGCGAGCACTGCGCGGCGTATCAGGGCAAAGCTTTGTGAGATGCTTTTGTAACTGAGACCAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
3UTR GCA 72 bp CTGCATACTAGTAACAGAGCTAGCCTTCCCACCAACTaGCTGTTGTTTGCAGGCTGTTTGTCCACTGTATAC +
Preference number: 3 (lower is better)
Translates to: LHTSNRASLPTN*LLFAGCLSTVY
Trigger: GTATACAGTGGACAAACAGCCTGCAAACAACAGGCAGTTGGTGGGAAGGCTAGCTCTGTTACTAGTATGCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
3UTR-3UTR CAA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGTCATGCTCTTCTAGTTaGCTTAACTCTTTTATACGC +
Preference number: 3 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGSCSSS*LNSFIR
Trigger: GCGTATAAAAGAGTTAAGCAAACTAGAAGAGCATGA...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
3UTR-3UTR CAA 90 bp AACATAGTGAGTTTCAGCGCAGGGTGTGTACACCTTGCCTTAATAGATTACACTAGAAGTGGATCCGATTaGGCATGGAGAGGTTCTACC +
Preference number: 3 (lower is better)
Translates to: NIVSFSAGCVHLALIDYTRSGSD*AWRGST
Trigger: GGTAGAACCTCTCCATGCCAAATCGGATCCACTTCT...AGTGTAATCTATTAAGGCAAGGTGTACACACCCTGCGCTGAAACTCACTATGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
3UTR GCA 72 bp TTCTGTTATAAACATCAAGGACGAGGCCATTTTAGTTaGTTGCAAGAGGTTGATGTTGAGTCTGCGCCGTGC +
Preference number: 3 (lower is better)
Translates to: FCYKHQGRGHFS*LQEVDVESAPC
Trigger: GCACGGCGCAGACTCAACATCAACCTCTTGCAAGCAACTAAAATGGCCTCGTCCTTGATGTTTATAACAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
3UTR TCA 72 bp GTGTTTGATCTCAGGCCACTCAATGTAATAACTCCCTaGATGACTGCCATCCTCTGCTCCTTAGTAGAGAAA +
Preference number: 3 (lower is better)
Translates to: VFDLRPLNVITP*MTAILCSLVEK
Trigger: TTTCTCTACTAAGGAGCAGAGGATGGCAGTCATTCAGGGAGTTATTACATTGAGTGGCCTGAGATCAAACAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
3UTR TCA 72 bp CAGTTTTCGGCTACCGTGTTCCATCTTGATTGGTTTTaGTCTTATGCTAGTCCCACTGTCGAAAGCTCGAAT +
Preference number: 3 (lower is better)
Translates to: QFSATVFHLDWF*SYASPTVESSN
Trigger: ATTCGAGCTTTCGACAGTGGGACTAGCATAAGATCAAAACCAATCAAGATGGAACACGGTAGCCGAAAACTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
3UTR-3UTR CAA 90 bp ATTGGTTTTGATCTTATGCTAGTCCCACTGTCGAAAGCTCGAATTCTTCTTAAGTGTGATTCCAATGGGTaGAGTGCCAACAGAAGTGGA +
Preference number: 3 (lower is better)
Translates to: IGFDLMLVPLSKARILLKCDSNG*SANRSG
Trigger: TCCACTTCTGTTGGCACTCAACCCATTGGAATCACA...CTTAAGAAGAATTCGAGCTTTCGACAGTGGGACTAGCATAAGATCAAAACCAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
3UTR TCA 72 bp GCCTGTTGTTTGCAGGCTGTTTGTCCACTGTATACGTaGCGCATCCATCATGTACAAATAGTTTTAAGTGAA +
Preference number: 3 (lower is better)
Translates to: ACCLQAVCPLYT*RIHHVQIVLSE
Trigger: TTCACTTAAAACTATTTGTACATGATGGATGCGTCACGTATACAGTGGACAAACAGCCTGCAAACAACAGGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
3UTR CCA 72 bp AAGTTAGGAGTTTTCACTGAGGAATCTAATAAAGCCTaGCATGAGCAATTTCCTTCATTCGTGTCACTGAAA +
Preference number: 3 (lower is better)
Translates to: KLGVFTEESNKA*HEQFPSFVSLK
Trigger: TTTCAGTGACACGAATGAAGGAAATTGCTCATGCCAGGCTTTATTAGATTCCTCAGTGAAAACTCCTAACTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
3UTR GCA 72 bp AAGACAGATATTAGACCTGAACTTTTCGTATGTTCATaGTCTTCTAGTTTGCTTAACTCTTTTATACGCACC +
Preference number: 3 (lower is better)
Translates to: KTDIRPELFVCS*SSSLLNSFIRT
Trigger: GGTGCGTATAAAAGAGTTAAGCAAACTAGAAGAGCATGAACATACGAAAAGTTCAGGTCTAATATCTGTCTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
3UTR TCA 72 bp TTTAAATTCTTTCCCACCCACAAGGATGTCTGCACCTaGAAAAATTGTGATTTACGGTTGAAGTTTCATTAT +
Preference number: 3 (lower is better)
Translates to: FKFFPTHKDVCT*KNCDLRLKFHY
Trigger: ATAATGAAACTTCAACCGTAAATCACAATTTTTTCAGGTGCAGACATCCTTGTGGGTGGGAAAGAATTTAAA
35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR GCA 90 bp GTCAGGAGAACACAACTGAGGTGTCGCCACAGAGCCCTTCCCCACGCAAGACCCGTTGGAAGAGTGGACTaGCGCCTGTGCTCAGGGGAG +
Preference number: 4 (lower is better)
Translates to: VRRTQLRCRHRALPHARPVGRVD*RLCSGE
Trigger: CTCCCCTGAGCACAGGCGGCAGTCCACTCTTCCAAC...GGGTCTTGCGTGGGGAAGGGCTCTGTGGCGACACCTCAGTTGTGTTCTCCTGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR CCA 90 bp CAGGAGAACACAACTGAGGTGTCGCCACAGAGCCCTTCCCCACGCAAGACCCTTTGGTGCTGGAGGGCGTaGCAACGCTGCTTGTGGGAC +
Preference number: 4 (lower is better)
Translates to: QENTTEVSPQSPSPRKTLWCWRA*QRCLWD
Trigger: GTCCCACAAGCAGCGTTGCCACGCCCTCCAGCACCA...AAGGGTCTTGCGTGGGGAAGGGCTCTGTGGCGACACCTCAGTTGTGTTCTCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR TCA 90 bp GTCAGGAGAACACAACTGAGGTGTCGCCACAGAGCCCTTCCCCACGCAAGACCCTGGAGGTGGCACTTCTaGGTTGGAAGAGTGGACTGC +
Preference number: 4 (lower is better)
Translates to: VRRTQLRCRHRALPHARPWRWHF*VGRVDC
Trigger: GCAGTCCACTCTTCCAACTCAGAAGTGCCACCTCCA...GGGTCTTGCGTGGGGAAGGGCTCTGTGGCGACACCTCAGTTGTGTTCTCCTGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR TCA 90 bp GTCAGGAGAACACAACTGAGGTGTCGCCACAGAGCCCTTCCCCACGCAAGACCCCACAGCAGCAAATGGTaGCCTGTCCAACCAAGCAAG +
Preference number: 4 (lower is better)
Translates to: VRRTQLRCRHRALPHARPHSSKW*PVQPSK
Trigger: CTTGCTTGGTTGGACAGGTCACCATTTGCTGCTGTG...GGGTCTTGCGTGGGGAAGGGCTCTGTGGCGACACCTCAGTTGTGTTCTCCTGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR TCA 90 bp AACACAACTGAGGTGTCGCCACAGAGCCCTTCCCCACGCAAGACCCTTTTACCCTTTTGGTGGGTGTACTaGTGGTGCTGGAGGGCGTGG +
Preference number: 4 (lower is better)
Translates to: NTTEVSPQSPSPRKTLLPFWWVY*WCWRAW
Trigger: CCACGCCCTCCAGCACCATCAGTACACCCACCAAAA...GGGTAAAAGGGTCTTGCGTGGGGAAGGGCTCTGTGGCGACACCTCAGTTGTGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR TCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGTGCCAGGAGCGGCGCTaGCTGGCTGTCTTGCGAATG +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGCQERR*LAVLRM
Trigger: CATTCGCAAGACAGCCAGTCAGCGCCGCTCCTGGCA...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR TCA 90 bp CAGGAGAACACAACTGAGGTGTCGCCACAGAGCCCTTCCCCACGCAAGACCCTTTCAGACAGCAATGGTTaGACCCGCTATCTCGAGGCA +
Preference number: 4 (lower is better)
Translates to: QENTTEVSPQSPSPRKTLSDSNG*TRYLEA
Trigger: TGCCTCGAGATAGCGGGTTCAACCATTGCTGTCTGA...AAGGGTCTTGCGTGGGGAAGGGCTCTGTGGCGACACCTCAGTTGTGTTCTCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR GCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGGTGGACTGCCGCCTGTaGTCAGGGGAGATGGCTGCT +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGVDCRL*SGEMAA
Trigger: AGCAGCCATCTCCCCTGAGCACAGGCGGCAGTCCAC...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR CCA 90 bp CAGGAGAACACAACTGAGGTGTCGCCACAGAGCCCTTCCCCACGCAAGACCCTTATCCCTGGGAATATATaGTTCTGCAGGAGGAGGGGG +
Preference number: 4 (lower is better)
Translates to: QENTTEVSPQSPSPRKTLIPGNI*FCRRRG
Trigger: CCCCCTCCTCCTGCAGAACCATATATTCCCAGGGAT...AAGGGTCTTGCGTGGGGAAGGGCTCTGTGGCGACACCTCAGTTGTGTTCTCCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR TCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGCAGCACTGCTCCCAGTaGCTTCCTGGCGGAACTCCT +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGQHCSQ*LPGGTP
Trigger: AGGAGTTCCGCCAGGAAGTCACTGGGAGCAGTGCTG...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR GCA 90 bp TGGGTTGAGTGCCAACAGAAGTGGATCCGATTTGGCATGGAGAGGTTCTACCAAGTGGACTGCCGCCTGTaGTCAGGGGAGATGGCTGCT +
Preference number: 4 (lower is better)
Translates to: WVECQQKWIRFGMERFYQVDCRL*SGEMAA
Trigger: AGCAGCCATCTCCCCTGAGCACAGGCGGCAGTCCAC...TTGGTAGAACCTCTCCATGCCAAATCGGATCCACTTCTGTTGGCACTCAACCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR GCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGGTTGGAAGAGTGGACTaGCGCCTGTGCTCAGGGGAG +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGVGRVD*RLCSGE
Trigger: CTCCCCTGAGCACAGGCGGCAGTCCACTCTTCCAAC...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR TCA 90 bp GTCAGGAGAACACAACTGAGGTGTCGCCACAGAGCCCTTCCCCACGCAAGACCCGCCCTTCACTTGGTTTaGTATTTGCCAGCTGAATCA +
Preference number: 4 (lower is better)
Translates to: VRRTQLRCRHRALPHARPALHLV*YLPAES
Trigger: TGATTCAGCTGGCAAATATCAAACCAAGTGAAGGGC...GGGTCTTGCGTGGGGAAGGGCTCTGTGGCGACACCTCAGTTGTGTTCTCCTGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR TCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGTTTTGGTGGGTGTACTaGTGGTGCTGGAGGGCGTGG +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGFWWVY*WCWRAW
Trigger: CCACGCCCTCCAGCACCATCAGTACACCCACCAAAA...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR TCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGTGGAGGTGGCACTTCTaGGTTGGAAGAGTGGACTGC +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGWRWHF*VGRVDC
Trigger: GCAGTCCACTCTTCCAACTCAGAAGTGCCACCTCCA...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR CCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGCTCCCAGTGACTTCCTaGCGGAACTCCTCGTGTGAA +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGLPVTS*RNSSCE
Trigger: TTCACACGAGGAGTTCCGCCAGGAAGTCACTGGGAG...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR CCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGTGGCTGTCTTGCGAATaGGAGACACAGCACTGCTCC +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGWLSCE*ETQHCS
Trigger: GGAGCAGTGCTGTGTCTCCCATTCGCAAGACAGCCA...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR CCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGGTGGCACTTCTGAGTTaGAAGAGTGGACTGCCGCCT +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGVALLS*KSGLPP
Trigger: AGGCGGCAGTCCACTCTTCCAACTCAGAAGTGCCAC...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR CCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGCTAGTGGTGACAGACTaGCTTCCTCCAGTGCCCTGT +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGLVVTD*LPPVPC
Trigger: ACAGGGCACTGGAGGAAGCCAGTCTGTCACCACTAG...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR TCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGTCCAAGATCAGCTCCTaGTGGCCAATACGGCTGACT +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGSKISS*WPIRLT
Trigger: AGTCAGCCGTATTGGCCATCAGGAGCTGATCTTGGA...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR TCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGCACAGCAGCAAATGGTaGCCTGTCCAACCAAGCAAG +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGHSSKW*PVQPSK
Trigger: CTTGCTTGGTTGGACAGGTCACCATTTGCTGCTGTG...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR TCA 90 bp GTCAGGAGAACACAACTGAGGTGTCGCCACAGAGCCCTTCCCCACGCAAGACCCTCTTCCTTGACTACTTaGTCGTCCCTTTTCATATTC +
Preference number: 4 (lower is better)
Translates to: VRRTQLRCRHRALPHARPSSLTT*SSLFIF
Trigger: GAATATGAAAAGGGACGATCAAGTAGTCAAGGAAGA...GGGTCTTGCGTGGGGAAGGGCTCTGTGGCGACACCTCAGTTGTGTTCTCCTGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR TCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGAGGGGAGATGGCTGCTaGATCCGAGAAGACAGAATC +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGRGDGC*IREDRI
Trigger: GATTCTGTCTTCTCGGATTCAGCAGCCATCTCCCCT...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR GCA 90 bp CAGGAGAACACAACTGAGGTGTCGCCACAGAGCCCTTCCCCACGCAAGACCCTTCACGGCCAAGATCCTTaGAAGAAATTCTTCTTTTGC +
Preference number: 4 (lower is better)
Translates to: QENTTEVSPQSPSPRKTLHGQDP*KKFFFC
Trigger: GCAAAAGAAGAATTTCTTGCAAGGATCTTGGCCGTG...AAGGGTCTTGCGTGGGGAAGGGCTCTGTGGCGACACCTCAGTTGTGTTCTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR CCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGATCCCTGGGAATATATaGTTCTGCAGGAGGAGGGGG +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGIPGNI*FCRRRG
Trigger: CCCCCTCCTCCTGCAGAACCATATATTCCCAGGGAT...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR CCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGACTGAGAGGTCTCTGTaGAGGAAAGCCGGCTGTGTT +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGTERSL*RKAGCV
Trigger: AACACAGCCGGCTTTCCTCCACAGAGACCTCTCAGT...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR CCA 90 bp TGGGTTGAGTGCCAACAGAAGTGGATCCGATTTGGCATGGAGAGGTTCTACCAATGGCTGTCTTGCGAATaGGAGACACAGCACTGCTCC +
Preference number: 4 (lower is better)
Translates to: WVECQQKWIRFGMERFYQWLSCE*ETQHCS
Trigger: GGAGCAGTGCTGTGTCTCCCATTCGCAAGACAGCCA...TTGGTAGAACCTCTCCATGCCAAATCGGATCCACTTCTGTTGGCACTCAACCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR TCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGATCCAGTCCACTACTTaGCTCGGAGACCATTTGCTC +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGIQSTT*LGDHLL
Trigger: GAGCAAATGGTCTCCGAGTCAAGTAGTGGACTGGAT...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR TCA 90 bp GACGAGGCCATTTTAGTTGCTTGCAAGAGGTTGATGTTGAGTCTGCGCCGTGCCAGATCTTCTAGCTCCTaGTGTGTAATGCGTAGCAGC +
Preference number: 4 (lower is better)
Translates to: DEAILVACKRLMLSLRRARSSSS*CVMRSS
Trigger: GCTGCTACGCATTACACATCAGGAGCTAGAAGATCT...GGCACGGCGCAGACTCAACATCAACCTCTTGCAAGCAACTAAAATGGCCTCGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR TCA 90 bp AACATCAAGGACGAGGCCATTTTAGTTGCTTGCAAGAGGTTGATGTTGAGTCTGCAGCACTGCTCCCAGTaGCTTCCTGGCGGAACTCCT +
Preference number: 4 (lower is better)
Translates to: NIKDEAILVACKRLMLSLQHCSQ*LPGGTP
Trigger: AGGAGTTCCGCCAGGAAGTCACTGGGAGCAGTGCTG...CAGACTCAACATCAACCTCTTGCAAGCAACTAAAATGGCCTCGTCCTTGATGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR TCA 90 bp AACATAGTGAGTTTCAGCGCAGGGTGTGTACACCTTGCCTTAATAGATTACACTTGCCAGGAGCGGCGCTaGCTGGCTGTCTTGCGAATG +
Preference number: 4 (lower is better)
Translates to: NIVSFSAGCVHLALIDYTCQERR*LAVLRM
Trigger: CATTCGCAAGACAGCCAGTCAGCGCCGCTCCTGGCA...AGTGTAATCTATTAAGGCAAGGTGTACACACCCTGCGCTGAAACTCACTATGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR GCA 90 bp GACGAGGCCATTTTAGTTGCTTGCAAGAGGTTGATGTTGAGTCTGCGCCGTGCCGACTCGGAGACCATTTaGTCACCGGTTCCATTATCA +
Preference number: 4 (lower is better)
Translates to: DEAILVACKRLMLSLRRADSETI*SPVPLS
Trigger: TGATAATGGAACCGGTGAGCAAATGGTCTCCGAGTC...GGCACGGCGCAGACTCAACATCAACCTCTTGCAAGCAACTAAAATGGCCTCGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR GCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGTGCCATAGGTTGGTGTaGTTTCCCGTCTTCCTTGAC +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGCHRLV*FPVFLD
Trigger: GTCAAGGAAGACGGGAAAGCACACCAACCTATGGCA...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR GCA 90 bp CAGGAGAACACAACTGAGGTGTCGCCACAGAGCCCTTCCCCACGCAAGACCCTTGATGTCTTGTCTCAATaGATCCATTTGCAAACTAGG +
Preference number: 4 (lower is better)
Translates to: QENTTEVSPQSPSPRKTLDVLSQ*IHLQTR
Trigger: CCTAGTTTGCAAATGGATGCATTGAGACAAGACATC...AAGGGTCTTGCGTGGGGAAGGGCTCTGTGGCGACACCTCAGTTGTGTTCTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR CCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGTGTGGTTTCTGGCACTaGTGTGCCCATGATGTCTTG +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGCGFWH*CAHDVL
Trigger: CAAGACATCATGGGCACACCAGTGCCAGAAACCACA...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR CCA 90 bp TGGGTTGAGTGCCAACAGAAGTGGATCCGATTTGGCATGGAGAGGTTCTACCAAACTGAGAGGTCTCTGTaGAGGAAAGCCGGCTGTGTT +
Preference number: 4 (lower is better)
Translates to: WVECQQKWIRFGMERFYQTERSL*RKAGCV
Trigger: AACACAGCCGGCTTTCCTCCACAGAGACCTCTCAGT...TTGGTAGAACCTCTCCATGCCAAATCGGATCCACTTCTGTTGGCACTCAACCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR CCA 90 bp TACCCTCTGTTCTCCCATAAAAAGGGCAGTTTTCGGCTACCGTGTTCCATCTTGTCTGAGTTGGAAGAGTaGACTGCCGCCTGTGCTCAG +
Preference number: 4 (lower is better)
Translates to: YPLFSHKKGSFRLPCSILSELEE*TAACAQ
Trigger: CTGAGCACAGGCGGCAGTCCACTCTTCCAACTCAGA...CAAGATGGAACACGGTAGCCGAAAACTGCCCTTTTTATGGGAGAACAGAGGGTA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR CCA 90 bp GACGAGGCCATTTTAGTTGCTTGCAAGAGGTTGATGTTGAGTCTGCGCCGTGCCGTCACAGGCACTAACTaGTGTGTTCAGACAGCAATG +
Preference number: 4 (lower is better)
Translates to: DEAILVACKRLMLSLRRAVTGTN*CVQTAM
Trigger: CATTGCTGTCTGAACACACCAGTTAGTGCCTGTGAC...GGCACGGCGCAGACTCAACATCAACCTCTTGCAAGCAACTAAAATGGCCTCGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
3UTR CAA 72 bp ATCAAGGACGAGGCCATTTTAGTTGCTTGCAAGAGGTaGATGTTGAGTCTGCGCCGTGCCACCTCTCTTCCA +
Preference number: 4 (lower is better)
Translates to: IKDEAILVACKR*MLSLRRATSLP
Trigger: TGGAAGAGAGGTGGCACGGCGCAGACTCAACATCAACCTCTTGCAAGCAACTAAAATGGCCTCGTCCTTGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR TCA 90 bp TGGGTTGAGTGCCAACAGAAGTGGATCCGATTTGGCATGGAGAGGTTCTACCAAATCCAGTCCACTACTTaGCTCGGAGACCATTTGCTC +
Preference number: 4 (lower is better)
Translates to: WVECQQKWIRFGMERFYQIQSTT*LGDHLL
Trigger: GAGCAAATGGTCTCCGAGTCAAGTAGTGGACTGGAT...TTGGTAGAACCTCTCCATGCCAAATCGGATCCACTTCTGTTGGCACTCAACCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR TCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGAGATCTTCTAGCTCCTaGTGTGTAATGCGTAGCAGC +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGRSSSS*CVMRSS
Trigger: GCTGCTACGCATTACACATCAGGAGCTAGAAGATCT...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR TCA 90 bp GACGAGGCCATTTTAGTTGCTTGCAAGAGGTTGATGTTGAGTCTGCGCCGTGCCTTCTTGGTCCAGAAATaGATTTGGGGATTCAGACCC +
Preference number: 4 (lower is better)
Translates to: DEAILVACKRLMLSLRRAFLVQK*IWGFRP
Trigger: GGGTCTGAATCCCCAAATTCATTTCTGGACCAAGAA...GGCACGGCGCAGACTCAACATCAACCTCTTGCAAGCAACTAAAATGGCCTCGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR GCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGGACTCGGAGACCATTTaGTCACCGGTTCCATTATCA +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGDSETI*SPVPLS
Trigger: TGATAATGGAACCGGTGAGCAAATGGTCTCCGAGTC...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR GCA 90 bp CAGGAGAACACAACTGAGGTGTCGCCACAGAGCCCTTCCCCACGCAAGACCCTTTCTTTCTGCATATCCTaGAGTCAGCATGTTAATTCT +
Preference number: 4 (lower is better)
Translates to: QENTTEVSPQSPSPRKTLSFCIS*SQHVNS
Trigger: AGAATTAACATGCTGACTGCAGGATATGCAGAAAGA...AAGGGTCTTGCGTGGGGAAGGGCTCTGTGGCGACACCTCAGTTGTGTTCTCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR CCA 90 bp AACATAGTGAGTTTCAGCGCAGGGTGTGTACACCTTGCCTTAATAGATTACACTAGGAGCGGCGCTGACTaGCTGTCTTGCGAATGGGAG +
Preference number: 4 (lower is better)
Translates to: NIVSFSAGCVHLALIDYTRSGAD*LSCEWE
Trigger: CTCCCATTCGCAAGACAGCCAGTCAGCGCCGCTCCT...AGTGTAATCTATTAAGGCAAGGTGTACACACCCTGCGCTGAAACTCACTATGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR CCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGGTCACAGGCACTAACTaGTGTGTTCAGACAGCAATG +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGVTGTN*CVQTAM
Trigger: CATTGCTGTCTGAACACACCAGTTAGTGCCTGTGAC...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
3UTR CAA 72 bp AGCCTTCCCACCAACTGCCTGTTGTTTGCAGGCTGTTaGTCCACTGTATACGTGACGCATCCATCATGTACA +
Preference number: 4 (lower is better)
Translates to: SLPTNCLLFAGC*STVYVTHPSCT
Trigger: TGTACATGATGGATGCGTCACGTATACAGTGGACAAACAGCCTGCAAACAACAGGCAGTTGGTGGGAAGGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
3UTR CAA 72 bp ACTAGTAACAGAGCTAGCCTTCCCACCAACTGCCTGTaGTTTGCAGGCTGTTTGTCCACTGTATACGTGACG +
Preference number: 4 (lower is better)
Translates to: TSNRASLPTNCL*FAGCLSTVYVT
Trigger: CGTCACGTATACAGTGGACAAACAGCCTGCAAACAACAGGCAGTTGGTGGGAAGGCTAGCTCTGTTACTAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
3UTR CAA 72 bp TCCAATGGGTTGAGTGCCAACAGAAGTGGATCCGATTaGGCATGGAGAGGTTCTACCAACTCTCGCAGTGTA +
Preference number: 4 (lower is better)
Translates to: SNGLSANRSGSD*AWRGSTNSRSV
Trigger: TACACTGCGAGAGTTGGTAGAACCTCTCCATGCCAAATCGGATCCACTTCTGTTGGCACTCAACCCATTGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
3UTR CAA 72 bp GACGAGGCCATTTTAGTTGCTTGCAAGAGGTTGATGTaGAGTCTGCGCCGTGCCACCTCTCTTCCATCTAAA +
Preference number: 4 (lower is better)
Translates to: DEAILVACKRLM*SLRRATSLPSK
Trigger: TTTAGATGGAAGAGAGGTGGCACGGCGCAGACTCAACATCAACCTCTTGCAAGCAACTAAAATGGCCTCGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR TCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGGCCCTTCACTTGGTTTaGTATTTGCCAGCTGAATCA +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGALHLV*YLPAES
Trigger: TGATTCAGCTGGCAAATATCAAACCAAGTGAAGGGC...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR TCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGGAGGTAAGCATGCTCTaGGGTCGCTTTTTCAAAGTT +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGEVSML*GRFFKV
Trigger: AACTTTGAAAAAGCGACCTCAGAGCATGCTTACCTC...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR TCA 90 bp CTGCCCCTCTTAATATCCCTTTATGGAGGCCCCAAATCCACAACACTTGATGATAGGGGAGATGGCTGCTaGATCCGAGAAGACAGAATC +
Preference number: 4 (lower is better)
Translates to: LPLLISLYGGPKSTTLDDRGDGC*IREDRI
Trigger: GATTCTGTCTTCTCGGATTCAGCAGCCATCTCCCCT...ATCATCAAGTGTTGTGGATTTGGGGCCTCCATAAAGGGATATTAAGAGGGGCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR GCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGACACAAAAGGTCAACTaGTTCCAAGATCAGCTCCTG +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGTQKVN*FQDQLL
Trigger: CAGGAGCTGATCTTGGAAGCAGTTGACCTTTTGTGT...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR GCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGAAGAAGACTCTTGGCTaGTCCAATCAGATCCACAAC +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGKKTLG*SNQIHN
Trigger: GTTGTGGATCTGATTGGAGCAGCCAAGAGTCTTCTT...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR CCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGTTGGTAATTTTCGGCTaGTCCTCCCATCATAATGGC +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGLVIFG*SSHHNG
Trigger: GCCATTATGATGGGAGGACCAGCCGAAAATTACCAA...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR CCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGAAGCAAGAAGACTCTTaGCTGCTCCAATCAGATCCA +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGKQEDS*LLQSDP
Trigger: TGGATCTGATTGGAGCAGCCAAGAGTCTTCTTGCTT...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR CCA 90 bp TTGATGTTGAGTCTGCGCCGTGCCACCTCTCTTCCATCTAAATTCTCTAAACATCTCCCAGTGACTTCCTaGCGGAACTCCTCGTGTGAA +
Preference number: 4 (lower is better)
Translates to: LMLSLRRATSLPSKFSKHLPVTS*RNSSCE
Trigger: TTCACACGAGGAGTTCCGCCAGGAAGTCACTGGGAG...ATGTTTAGAGAATTTAGATGGAAGAGAGGTGGCACGGCGCAGACTCAACATCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR CCA 90 bp GATTCCAATGGGTTGAGTGCCAACAGAAGTGGATCCGATTTGGCATGGAGAGGTCTGTATGTCATCTTGTaGGTCACAGGCACTAACTGG +
Preference number: 4 (lower is better)
Translates to: DSNGLSANRSGSDLAWRGLYVIL*VTGTNW
Trigger: CCAGTTAGTGCCTGTGACCCACAAGATGACATACAG...ACCTCTCCATGCCAAATCGGATCCACTTCTGTTGGCACTCAACCCATTGGAATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR TCA 90 bp CTGCCCCTCTTAATATCCCTTTATGGAGGCCCCAAATCCACAACACTTGATGATCCACCATATGTCCTCTaGGGTCTTCACAAGGAAGGT +
Preference number: 4 (lower is better)
Translates to: LPLLISLYGGPKSTTLDDPPYVL*GLHKEG
Trigger: ACCTTCCTTGTGAAGACCTCAGAGGACATATGGTGG...ATCATCAAGTGTTGTGGATTTGGGGCCTCCATAAAGGGATATTAAGAGGGGCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR TCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGGTGTTAGAGAGGAAGTaGGAACATCTACTTCAGAAG +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGVLERK*EHLLQK
Trigger: CTTCTGAAGTAGATGTTCTCACTTCCTCTCTAACAC...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR TCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGGTCTCAATGTATGAGTaGGTGTGTGTTAGAGAGGAA +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGVSMYE*VCVREE
Trigger: TTCCTCTCTAACACACACTCACTCATACATTGAGAC...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR GCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGCTCAATGCATCCATTTaGAAACTAGGCAGCAATGAG +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGLNASI*KLGSNE
Trigger: CTCATTGCTGCCTAGTTTGCAAATGGATGCATTGAG...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR GCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGCACGGCCAAGATCCTTaGAAGAAATTCTTCTTTTGC +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGHGQDP*KKFFFC
Trigger: GCAAAAGAAGAATTTCTTGCAAGGATCTTGGCCGTG...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR GCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGTGTCGATGGAGTATCTaGTTCTTCTTTGTCACTCTC +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGCRWSI*FFFVTL
Trigger: GAGAGTGACAAAGAAGAAGCAGATACTCCATCGACA...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR GCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGAGGTCGAGGTACATCTaGTTCCATTGTTGGAATTCT +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGRSRYI*FHCWNS
Trigger: AGAATTCCAACAATGGAAGCAGATGTACCTCGACCT...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR CCA 90 bp GATTCCAATGGGTTGAGTGCCAACAGAAGTGGATCCGATTTGGCATGGAGAGGTTTGGTAATTTTCGGCTaGTCCTCCCATCATAATGGC +
Preference number: 4 (lower is better)
Translates to: DSNGLSANRSGSDLAWRGLVIFG*SSHHNG
Trigger: GCCATTATGATGGGAGGACCAGCCGAAAATTACCAA...ACCTCTCCATGCCAAATCGGATCCACTTCTGTTGGCACTCAACCCATTGGAATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR CCA 90 bp CAAATTGTGACTTGTATATTATGCAGCCACACACTAAAAAGCAGCAAGTCACTTTGGTGCTGGAGGGCGTaGCAACGCTGCTTGTGGGAC +
Preference number: 4 (lower is better)
Translates to: QIVTCILCSHTLKSSKSLWCWRA*QRCLWD
Trigger: GTCCCACAAGCAGCGTTGCCACGCCCTCCAGCACCA...AAGTGACTTGCTGCTTTTTAGTGTGTGGCTGCATAATATACAAGTCACAATTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR CCA 90 bp AACATAGTGAGTTTCAGCGCAGGGTGTGTACACCTTGCCTTAATAGATTACACTGTGGCACTTCTGAGTTaGAAGAGTGGACTGCCGCCT +
Preference number: 4 (lower is better)
Translates to: NIVSFSAGCVHLALIDYTVALLS*KSGLPP
Trigger: AGGCGGCAGTCCACTCTTCCAACTCAGAAGTGCCAC...AGTGTAATCTATTAAGGCAAGGTGTACACACCCTGCGCTGAAACTCACTATGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR TCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGAATCAGATCCACAACTaGGGTCAAAAAGTCATTTGG +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGNQIHN*GQKVIW
Trigger: CCAAATGACTTTTTGACCTCAGTTGTGGATCTGATT...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR TCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGTCTTCCTTGACTACTTaGTCGTCCCTTTTCATATTC +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGSSLTT*SSLFIF
Trigger: GAATATGAAAAGGGACGATCAAGTAGTCAAGGAAGA...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR GCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGGATGTCTTGTCTCAATaGATCCATTTGCAAACTAGG +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGDVLSQ*IHLQTR
Trigger: CCTAGTTTGCAAATGGATGCATTGAGACAAGACATC...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR GCA 90 bp AACATAGTGAGTTTCAGCGCAGGGTGTGTACACCTTGCCTTAATAGATTACACTGAGGCTTGCCCCCATTaGCGTTTAACACTTGCATCC +
Preference number: 4 (lower is better)
Translates to: NIVSFSAGCVHLALIDYTEACPH*RLTLAS
Trigger: GGATGCAAGTGTTAAACGGCAATGGGGGCAAGCCTC...AGTGTAATCTATTAAGGCAAGGTGTACACACCCTGCGCTGAAACTCACTATGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR CCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGTTCCTTTTTCATCCCTaGGAATATATGGTTCTGCAG +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGFLFHP*EYMVLQ
Trigger: CTGCAGAACCATATATTCCCAGGGATGAAAAAGGAA...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR CCA 90 bp GACGAGGCCATTTTAGTTGCTTGCAAGAGGTTGATGTTGAGTCTGCGCCGTGCCCTCTTTCGATATTCTTaGTCCAGAAATGAATTTGGG +
Preference number: 4 (lower is better)
Translates to: DEAILVACKRLMLSLRRALFRYS*SRNEFG
Trigger: CCCAAATTCATTTCTGGACCAAGAATATCGAAAGAG...GGCACGGCGCAGACTCAACATCAACCTCTTGCAAGCAACTAAAATGGCCTCGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR CCA 90 bp CAAATTGTGACTTGTATATTATGCAGCCACACACTAAAAAGCAGCAAGTCACTTAGGAGCGGCGCTGACTaGCTGTCTTGCGAATGGGAG +
Preference number: 4 (lower is better)
Translates to: QIVTCILCSHTLKSSKSLRSGAD*LSCEWE
Trigger: CTCCCATTCGCAAGACAGCCAGTCAGCGCCGCTCCT...AAGTGACTTGCTGCTTTTTAGTGTGTGGCTGCATAATATACAAGTCACAATTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR TCA 90 bp GATTCCAATGGGTTGAGTGCCAACAGAAGTGGATCCGATTTGGCATGGAGAGGTAATCAGATCCACAACTaGGGTCAAAAAGTCATTTGG +
Preference number: 4 (lower is better)
Translates to: DSNGLSANRSGSDLAWRGNQIHN*GQKVIW
Trigger: CCAAATGACTTTTTGACCTCAGTTGTGGATCTGATT...ACCTCTCCATGCCAAATCGGATCCACTTCTGTTGGCACTCAACCCATTGGAATC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR TCA 90 bp CTCATTCCAGCTTATGAGGCAACATCACTTCTATGTAAGTGCCAAGGAAAAGGAGCACTGGTGTGCCCATaGTGTCTTGTCTCAATGCAT +
Preference number: 4 (lower is better)
Translates to: LIPAYEATSLLCKCQGKGALVCP*CLVSMH
Trigger: ATGCATTGAGACAAGACATCATGGGCACACCAGTGC...TCCTTTTCCTTGGCACTTACATAGAAGTGATGTTGCCTCATAAGCTGGAATGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR TCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGTCTTTTGCTCTTGCCTaGTATAGCTCCTTTGTTTTT +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGSFALA*YSSFVF
Trigger: AAAAACAAAGGAGCTATATCAGGCAAGAGCAAAAGA...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR GCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGTTCTTAATGTACTGCTaGAAACAGTCATCAAGACCT +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGFLMYC*KQSSRP
Trigger: AGGTCTTGATGACTGTTTGCAGCAGTACATTAAGAA...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR GCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGCAGTTTCATATACAGTaGAATCCTGTTGCACAATTG +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGQFHIQ*NPVAQL
Trigger: CAATTGTGCAACAGGATTGCACTGTATATGAAACTG...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR GCA 90 bp CTCATTCCAGCTTATGAGGCAACATCACTTCTATGTAAGTGCCAAGGAAAAGGATGCCATAGGTTGGTGTaGTTTCCCGTCTTCCTTGAC +
Preference number: 4 (lower is better)
Translates to: LIPAYEATSLLCKCQGKGCHRLV*FPVFLD
Trigger: GTCAAGGAAGACGGGAAAGCACACCAACCTATGGCA...TCCTTTTCCTTGGCACTTACATAGAAGTGATGTTGCCTCATAAGCTGGAATGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR GCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGTCTTTCTGCATATCCTaGAGTCAGCATGTTAATTCT +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGSFCIS*SQHVNS
Trigger: AGAATTAACATGCTGACTGCAGGATATGCAGAAAGA...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR CCA 90 bp CTCATTCCAGCTTATGAGGCAACATCACTTCTATGTAAGTGCCAAGGAAAAGGAGTACAGTGTGGTTTCTaGCACTGGTGTGCCCATGAT +
Preference number: 4 (lower is better)
Translates to: LIPAYEATSLLCKCQGKGVQCGF*HWCAHD
Trigger: ATCATGGGCACACCAGTGCCAGAAACCACACTGTAC...TCCTTTTCCTTGGCACTTACATAGAAGTGATGTTGCCTCATAAGCTGGAATGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR GCA 90 bp TTGATGTTGAGTCTGCGCCGTGCCACCTCTCTTCCATCTAAATTCTCTAAACATAAGAAGACTCTTGGCTaGTCCAATCAGATCCACAAC +
Preference number: 4 (lower is better)
Translates to: LMLSLRRATSLPSKFSKHKKTLG*SNQIHN
Trigger: GTTGTGGATCTGATTGGAGCAGCCAAGAGTCTTCTT...ATGTTTAGAGAATTTAGATGGAAGAGAGGTGGCACGGCGCAGACTCAACATCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR CCA 90 bp TCCCTTTATGGAGGCCCCAAATCCACAACACTTGATGATCTAAGCTTTTTACAAAGACCCCTTATGAACTaGCTTGCCCACCATATGTCC +
Preference number: 4 (lower is better)
Translates to: SLYGGPKSTTLDDLSFLQRPLMN*LAHHMS
Trigger: GGACATATGGTGGGCAAGCCAGTTCATAAGGGGTCT...TTGTAAAAAGCTTAGATCATCAAGTGTTGTGGATTTGGGGCCTCCATAAAGGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR CCA 90 bp TCCCTTTATGGAGGCCCCAAATCCACAACACTTGATGATCTAAGCTTTTTACAATGTGGTTTCTGGCACTaGTGTGCCCATGATGTCTTG +
Preference number: 4 (lower is better)
Translates to: SLYGGPKSTTLDDLSFLQCGFWH*CAHDVL
Trigger: CAAGACATCATGGGCACACCAGTGCCAGAAACCACA...TTGTAAAAAGCTTAGATCATCAAGTGTTGTGGATTTGGGGCCTCCATAAAGGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR CCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGCTTTTGATTTTAGGATaGCAGGCTTTGAATGCATAT +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGLLILG*QALNAY
Trigger: ATATGCATTCAAAGCCTGCCATCCTAAAATCAAAAG...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR CCA 90 bp CAAATTGTGACTTGTATATTATGCAGCCACACACTAAAAAGCAGCAAGTCACTTTCTGAGTTGGAAGAGTaGACTGCCGCCTGTGCTCAG +
Preference number: 4 (lower is better)
Translates to: QIVTCILCSHTLKSSKSLSELEE*TAACAQ
Trigger: CTGAGCACAGGCGGCAGTCCACTCTTCCAACTCAGA...AAGTGACTTGCTGCTTTTTAGTGTGTGGCTGCATAATATACAAGTCACAATTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR TCA 90 bp AACATCAAGGACGAGGCCATTTTAGTTGCTTGCAAGAGGTTGATGTTGAGTCTGGTTATTTCTTGTGACTaGATAGTCTGTCACAGCAGC +
Preference number: 4 (lower is better)
Translates to: NIKDEAILVACKRLMLSLVISCD*IVCHSS
Trigger: GCTGCTGTGACAGACTATTCAGTCACAAGAAATAAC...CAGACTCAACATCAACCTCTTGCAAGCAACTAAAATGGCCTCGTCCTTGATGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR TCA 90 bp ATTGGTTTTGATCTTATGCTAGTCCCACTGTCGAAAGCTCGAATTCTTCTTAAGCTGATGACAGGGATATaGTGTGGTCACAGACTCCAG +
Preference number: 4 (lower is better)
Translates to: IGFDLMLVPLSKARILLKLMTGI*CGHRLQ
Trigger: CTGGAGTCTGTGACCACATCATATCCCTGTCATCAG...CTTAAGAAGAATTCGAGCTTTCGACAGTGGGACTAGCATAAGATCAAAACCAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR TCA 90 bp CTCATTCCAGCTTATGAGGCAACATCACTTCTATGTAAGTGCCAAGGAAAAGGAGAGGTAAGCATGCTCTaGGGTCGCTTTTTCAAAGTT +
Preference number: 4 (lower is better)
Translates to: LIPAYEATSLLCKCQGKGEVSML*GRFFKV
Trigger: AACTTTGAAAAAGCGACCTCAGAGCATGCTTACCTC...TCCTTTTCCTTGGCACTTACATAGAAGTGATGTTGCCTCATAAGCTGGAATGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR TCA 90 bp ATTGGTTTTGATCTTATGCTAGTCCCACTGTCGAAAGCTCGAATTCTTCTTAAGGATTCAGACCCCTTATaGACTGGCTTGCCCACCATA +
Preference number: 4 (lower is better)
Translates to: IGFDLMLVPLSKARILLKDSDPL*TGLPTI
Trigger: TATGGTGGGCAAGCCAGTTCATAAGGGGTCTGAATC...CTTAAGAAGAATTCGAGCTTTCGACAGTGGGACTAGCATAAGATCAAAACCAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR TCA 90 bp CAAATTGTGACTTGTATATTATGCAGCCACACACTAAAAAGCAGCAAGTCACTTTCAGACAGCAATGGTTaGACCCGCTATCTCGAGGCA +
Preference number: 4 (lower is better)
Translates to: QIVTCILCSHTLKSSKSLSDSNG*TRYLEA
Trigger: TGCCTCGAGATAGCGGGTTCAACCATTGCTGTCTGA...AAGTGACTTGCTGCTTTTTAGTGTGTGGCTGCATAATATACAAGTCACAATTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR GCA 90 bp CAAATTGTGACTTGTATATTATGCAGCCACACACTAAAAAGCAGCAAGTCACTTGAGGCTTGCCCCCATTaGCGTTTAACACTTGCATCC +
Preference number: 4 (lower is better)
Translates to: QIVTCILCSHTLKSSKSLEACPH*RLTLAS
Trigger: GGATGCAAGTGTTAAACGGCAATGGGGGCAAGCCTC...AAGTGACTTGCTGCTTTTTAGTGTGTGGCTGCATAATATACAAGTCACAATTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR CCA 90 bp CTCATTCCAGCTTATGAGGCAACATCACTTCTATGTAAGTGCCAAGGAAAAGGAAAGCAAGAAGACTCTTaGCTGCTCCAATCAGATCCA +
Preference number: 4 (lower is better)
Translates to: LIPAYEATSLLCKCQGKGKQEDS*LLQSDP
Trigger: TGGATCTGATTGGAGCAGCCAAGAGTCTTCTTGCTT...TCCTTTTCCTTGGCACTTACATAGAAGTGATGTTGCCTCATAAGCTGGAATGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR CCA 90 bp CTCATTCCAGCTTATGAGGCAACATCACTTCTATGTAAGTGCCAAGGAAAAGGAGTCCCGGTAATTACATaGAGGCCATCATATGTGGAT +
Preference number: 4 (lower is better)
Translates to: LIPAYEATSLLCKCQGKGVPVIT*RPSYVD
Trigger: ATCCACATATGATGGCCTCCATGTAATTACCGGGAC...TCCTTTTCCTTGGCACTTACATAGAAGTGATGTTGCCTCATAAGCTGGAATGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
3UTR CAA 72 bp CTAAACATTAGCTTATCAATCTGTGATTCCAATGGGTaGAGTGCCAACAGAAGTGGATCCGATTTGGCATGG +
Preference number: 4 (lower is better)
Translates to: LNISLSICDSNG*SANRSGSDLAW
Trigger: CCATGCCAAATCGGATCCACTTCTGTTGGCACTCAACCCATTGGAATCACAGATTGATAAGCTAATGTTTAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR TCA 90 bp CAAATTGTGACTTGTATATTATGCAGCCACACACTAAAAAGCAGCAAGTCACTTCTGATGACAGGGATATaGTGTGGTCACAGACTCCAG +
Preference number: 4 (lower is better)
Translates to: QIVTCILCSHTLKSSKSLLMTGI*CGHRLQ
Trigger: CTGGAGTCTGTGACCACATCATATCCCTGTCATCAG...AAGTGACTTGCTGCTTTTTAGTGTGTGGCTGCATAATATACAAGTCACAATTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR TCA 90 bp CAAATTGTGACTTGTATATTATGCAGCCACACACTAAAAAGCAGCAAGTCACTTCCACCATATGTCCTCTaGGGTCTTCACAAGGAAGGT +
Preference number: 4 (lower is better)
Translates to: QIVTCILCSHTLKSSKSLPPYVL*GLHKEG
Trigger: ACCTTCCTTGTGAAGACCTCAGAGGACATATGGTGG...AAGTGACTTGCTGCTTTTTAGTGTGTGGCTGCATAATATACAAGTCACAATTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR TCA 90 bp CAAATTGTGACTTGTATATTATGCAGCCACACACTAAAAAGCAGCAAGTCACTTGATTCAGACCCCTTATaGACTGGCTTGCCCACCATA +
Preference number: 4 (lower is better)
Translates to: QIVTCILCSHTLKSSKSLDSDPL*TGLPTI
Trigger: TATGGTGGGCAAGCCAGTTCATAAGGGGTCTGAATC...AAGTGACTTGCTGCTTTTTAGTGTGTGGCTGCATAATATACAAGTCACAATTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR TCA 90 bp CAAATTGTGACTTGTATATTATGCAGCCACACACTAAAAAGCAGCAAGTCACTTGCACTGGTGTGCCCATaGTGTCTTGTCTCAATGCAT +
Preference number: 4 (lower is better)
Translates to: QIVTCILCSHTLKSSKSLALVCP*CLVSMH
Trigger: ATGCATTGAGACAAGACATCATGGGCACACCAGTGC...AAGTGACTTGCTGCTTTTTAGTGTGTGGCTGCATAATATACAAGTCACAATTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR GCA 90 bp CTGCCCCTCTTAATATCCCTTTATGGAGGCCCCAAATCCACAACACTTGATGATTTCTTAATGTACTGCTaGAAACAGTCATCAAGACCT +
Preference number: 4 (lower is better)
Translates to: LPLLISLYGGPKSTTLDDFLMYC*KQSSRP
Trigger: AGGTCTTGATGACTGTTTGCAGCAGTACATTAAGAA...ATCATCAAGTGTTGTGGATTTGGGGCCTCCATAAAGGGATATTAAGAGGGGCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR GCA 90 bp CTCATTCCAGCTTATGAGGCAACATCACTTCTATGTAAGTGCCAAGGAAAAGGACTCAATGCATCCATTTaGAAACTAGGCAGCAATGAG +
Preference number: 4 (lower is better)
Translates to: LIPAYEATSLLCKCQGKGLNASI*KLGSNE
Trigger: CTCATTGCTGCCTAGTTTGCAAATGGATGCATTGAG...TCCTTTTCCTTGGCACTTACATAGAAGTGATGTTGCCTCATAAGCTGGAATGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR CCA 90 bp TTGATGTTGAGTCTGCGCCGTGCCACCTCTCTTCCATCTAAATTCTCTAAACATTTCCTTTTTCATCCCTaGGAATATATGGTTCTGCAG +
Preference number: 4 (lower is better)
Translates to: LMLSLRRATSLPSKFSKHFLFHP*EYMVLQ
Trigger: CTGCAGAACCATATATTCCCAGGGATGAAAAAGGAA...ATGTTTAGAGAATTTAGATGGAAGAGAGGTGGCACGGCGCAGACTCAACATCAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR CCA 90 bp CAAATTGTGACTTGTATATTATGCAGCCACACACTAAAAAGCAGCAAGTCACTTAGACCCCTTATGAACTaGCTTGCCCACCATATGTCC +
Preference number: 4 (lower is better)
Translates to: QIVTCILCSHTLKSSKSLRPLMN*LAHHMS
Trigger: GGACATATGGTGGGCAAGCCAGTTCATAAGGGGTCT...AAGTGACTTGCTGCTTTTTAGTGTGTGGCTGCATAATATACAAGTCACAATTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR CCA 90 bp CAAATTGTGACTTGTATATTATGCAGCCACACACTAAAAAGCAGCAAGTCACTTGTACAGTGTGGTTTCTaGCACTGGTGTGCCCATGAT +
Preference number: 4 (lower is better)
Translates to: QIVTCILCSHTLKSSKSLVQCGF*HWCAHD
Trigger: ATCATGGGCACACCAGTGCCAGAAACCACACTGTAC...AAGTGACTTGCTGCTTTTTAGTGTGTGGCTGCATAATATACAAGTCACAATTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR GCA 90 bp AACATAGTGAGTTTCAGCGCAGGGTGTGTACACCTTGCCTTAATAGATTACACTACTTGGTTTGATATTTaGCAGCTGAATCACTTCCAG +
Preference number: 4 (lower is better)
Translates to: NIVSFSAGCVHLALIDYTTWFDI*QLNHFQ
Trigger: CTGGAAGTGATTCAGCTGGCAAATATCAAACCAAGT...AGTGTAATCTATTAAGGCAAGGTGTACACACCCTGCGCTGAAACTCACTATGTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR GCA 90 bp TCCCTTTATGGAGGCCCCAAATCCACAACACTTGATGATCTAAGCTTTTTACAAAATCCTCTCTCTTTCTaGATATCCTGCAGTCAGCAT +
Preference number: 4 (lower is better)
Translates to: SLYGGPKSTTLDDLSFLQNPLSF*ISCSQH
Trigger: ATGCTGACTGCAGGATATGCAGAAAGAGAGAGGATT...TTGTAAAAAGCTTAGATCATCAAGTGTTGTGGATTTGGGGCCTCCATAAAGGGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR GCA 90 bp TCCCTTTATGGAGGCCCCAAATCCACAACACTTGATGATCTAAGCTTTTTACAATGTCGATGGAGTATCTaGTTCTTCTTTGTCACTCTC +
Preference number: 4 (lower is better)
Translates to: SLYGGPKSTTLDDLSFLQCRWSI*FFFVTL
Trigger: GAGAGTGACAAAGAAGAAGCAGATACTCCATCGACA...TTGTAAAAAGCTTAGATCATCAAGTGTTGTGGATTTGGGGCCTCCATAAAGGGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR CCA 90 bp CAAATTGTGACTTGTATATTATGCAGCCACACACTAAAAAGCAGCAAGTCACTTGACAGGGATATGATGTaGTCACAGACTCCAGAGAGA +
Preference number: 4 (lower is better)
Translates to: QIVTCILCSHTLKSSKSLDRDMM*SQTPER
Trigger: TCTCTCTGGAGTCTGTGACCACATCATATCCCTGTC...AAGTGACTTGCTGCTTTTTAGTGTGTGGCTGCATAATATACAAGTCACAATTTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR CCA 90 bp CAAATTGTGACTTGTATATTATGCAGCCACACACTAAAAAGCAGCAAGTCACTTCTGTATGTCATCTTGTaGGTCACAGGCACTAACTGG +
Preference number: 4 (lower is better)
Translates to: QIVTCILCSHTLKSSKSLLYVIL*VTGTNW
Trigger: CCAGTTAGTGCCTGTGACCCACAAGATGACATACAG...AAGTGACTTGCTGCTTTTTAGTGTGTGGCTGCATAATATACAAGTCACAATTTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR TCA 90 bp CAAATTGTGACTTGTATATTATGCAGCCACACACTAAAAAGCAGCAAGTCACTTTTCTTGGTCCAGAAATaGATTTGGGGATTCAGACCC +
Preference number: 4 (lower is better)
Translates to: QIVTCILCSHTLKSSKSLFLVQK*IWGFRP
Trigger: GGGTCTGAATCCCCAAATTCATTTCTGGACCAAGAA...AAGTGACTTGCTGCTTTTTAGTGTGTGGCTGCATAATATACAAGTCACAATTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR GCA 90 bp CAAATTGTGACTTGTATATTATGCAGCCACACACTAAAAAGCAGCAAGTCACTTCCATCTTGGTTGAAATaGGATGTTCTCCTAGTGGTG +
Preference number: 4 (lower is better)
Translates to: QIVTCILCSHTLKSSKSLPSWLK*DVLLVV
Trigger: CACCACTAGGAGAACATCGCATTTCAACCAAGATGG...AAGTGACTTGCTGCTTTTTAGTGTGTGGCTGCATAATATACAAGTCACAATTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR CCA 90 bp CAAATTGTGACTTGTATATTATGCAGCCACACACTAAAAAGCAGCAAGTCACTTGTCCCGGTAATTACATaGAGGCCATCATATGTGGAT +
Preference number: 4 (lower is better)
Translates to: QIVTCILCSHTLKSSKSLVPVIT*RPSYVD
Trigger: ATCCACATATGATGGCCTCCATGTAATTACCGGGAC...AAGTGACTTGCTGCTTTTTAGTGTGTGGCTGCATAATATACAAGTCACAATTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR CCA 90 bp CAAATTGTGACTTGTATATTATGCAGCCACACACTAAAAAGCAGCAAGTCACTTGTGGGTCATTTGAGGTaGTGCTTTGACAGATATCCA +
Preference number: 4 (lower is better)
Translates to: QIVTCILCSHTLKSSKSLVGHLR*CFDRYP
Trigger: TGGATATCTGTCAAAGCACCACCTCAAATGACCCAC...AAGTGACTTGCTGCTTTTTAGTGTGTGGCTGCATAATATACAAGTCACAATTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR TCA 90 bp CAAATTGTGACTTGTATATTATGCAGCCACACACTAAAAAGCAGCAAGTCACTTGTTATTTCTTGTGACTaGATAGTCTGTCACAGCAGC +
Preference number: 4 (lower is better)
Translates to: QIVTCILCSHTLKSSKSLVISCD*IVCHSS
Trigger: GCTGCTGTGACAGACTATTCAGTCACAAGAAATAAC...AAGTGACTTGCTGCTTTTTAGTGTGTGGCTGCATAATATACAAGTCACAATTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR TCA 90 bp TCCCTTTATGGAGGCCCCAAATCCACAACACTTGATGATCTAAGCTTTTTACAATCTTTTGCTCTTGCCTaGTATAGCTCCTTTGTTTTT +
Preference number: 4 (lower is better)
Translates to: SLYGGPKSTTLDDLSFLQSFALA*YSSFVF
Trigger: AAAAACAAAGGAGCTATATCAGGCAAGAGCAAAAGA...TTGTAAAAAGCTTAGATCATCAAGTGTTGTGGATTTGGGGCCTCCATAAAGGGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR GCA 90 bp TCCCTTTATGGAGGCCCCAAATCCACAACACTTGATGATCTAAGCTTTTTACAACAGTTTCATATACAGTaGAATCCTGTTGCACAATTG +
Preference number: 4 (lower is better)
Translates to: SLYGGPKSTTLDDLSFLQQFHIQ*NPVAQL
Trigger: CAATTGTGCAACAGGATTGCACTGTATATGAAACTG...TTGTAAAAAGCTTAGATCATCAAGTGTTGTGGATTTGGGGCCTCCATAAAGGGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR GCA 90 bp CAAATTGTGACTTGTATATTATGCAGCCACACACTAAAAAGCAGCAAGTCACTTATGGCAGGCTTTGAATaGATATTTCTTGCGGCATTC +
Preference number: 4 (lower is better)
Translates to: QIVTCILCSHTLKSSKSLMAGFE*IFLAAF
Trigger: GAATGCCGCAAGAAATATGCATTCAAAGCCTGCCAT...AAGTGACTTGCTGCTTTTTAGTGTGTGGCTGCATAATATACAAGTCACAATTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR GCA 90 bp ACAGGTATTCATATTATGCAATACCACACACTGCAGCAACAGGAAGAAAAACATATGGCAGGCTTTGAATaGATATTTCTTGCGGCATTC +
Preference number: 4 (lower is better)
Translates to: TGIHIMQYHTLQQQEEKHMAGFE*IFLAAF
Trigger: GAATGCCGCAAGAAATATGCATTCAAAGCCTGCCAT...ATGTTTTTCTTCCTGTTGCTGCAGTGTGTGGTATTGCATAATATGAATACCTGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR GCA 90 bp CAAATTGTGACTTGTATATTATGCAGCCACACACTAAAAAGCAGCAAGTCACTTAATCCTCTCTCTTTCTaGATATCCTGCAGTCAGCAT +
Preference number: 4 (lower is better)
Translates to: QIVTCILCSHTLKSSKSLNPLSF*ISCSQH
Trigger: ATGCTGACTGCAGGATATGCAGAAAGAGAGAGGATT...AAGTGACTTGCTGCTTTTTAGTGTGTGGCTGCATAATATACAAGTCACAATTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR GCA 90 bp CAAATTGTGACTTGTATATTATGCAGCCACACACTAAAAAGCAGCAAGTCACTTACTTGGTTTGATATTTaGCAGCTGAATCACTTCCAG +
Preference number: 4 (lower is better)
Translates to: QIVTCILCSHTLKSSKSLTWFDI*QLNHFQ
Trigger: CTGGAAGTGATTCAGCTGGCAAATATCAAACCAAGT...AAGTGACTTGCTGCTTTTTAGTGTGTGGCTGCATAATATACAAGTCACAATTTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR GCA 90 bp CAAATTGTGACTTGTATATTATGCAGCCACACACTAAAAAGCAGCAAGTCACTTAGAATTCTCAGCCTGTaGAGTTTCTCATTCATCACA +
Preference number: 4 (lower is better)
Translates to: QIVTCILCSHTLKSSKSLRILSL*SFSFIT
Trigger: TGTGATGAATGAGAAACTGCACAGGCTGAGAATTCT...AAGTGACTTGCTGCTTTTTAGTGTGTGGCTGCATAATATACAAGTCACAATTTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR CCA 90 bp TCCCTTTATGGAGGCCCCAAATCCACAACACTTGATGATCTAAGCTTTTTACAACTTTTGATTTTAGGATaGCAGGCTTTGAATGCATAT +
Preference number: 4 (lower is better)
Translates to: SLYGGPKSTTLDDLSFLQLLILG*QALNAY
Trigger: ATATGCATTCAAAGCCTGCCATCCTAAAATCAAAAG...TTGTAAAAAGCTTAGATCATCAAGTGTTGTGGATTTGGGGCCTCCATAAAGGGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR GCA 90 bp CAAATTGTGACTTGTATATTATGCAGCCACACACTAAAAAGCAGCAAGTCACTTGCCCTGTATAAATCTTaGAAGGAGTCTCCTAATTTT +
Preference number: 4 (lower is better)
Translates to: QIVTCILCSHTLKSSKSLALYKS*KESPNF
Trigger: AAAATTAGGAGACTCCTTGCAAGATTTATACAGGGC...AAGTGACTTGCTGCTTTTTAGTGTGTGGCTGCATAATATACAAGTCACAATTTG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR CCA 90 bp CAAATTGTGACTTGTATATTATGCAGCCACACACTAAAAAGCAGCAAGTCACTTCTCTTTCGATATTCTTaGTCCAGAAATGAATTTGGG +
Preference number: 4 (lower is better)
Translates to: QIVTCILCSHTLKSSKSLLFRYS*SRNEFG
Trigger: CCCAAATTCATTTCTGGACCAAGAATATCGAAAGAG...AAGTGACTTGCTGCTTTTTAGTGTGTGGCTGCATAATATACAAGTCACAATTTG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR CCA 90 bp CAAATTGTGACTTGTATATTATGCAGCCACACACTAAAAAGCAGCAAGTCACTTGTTTGTATTCCATCTTaGTTGAAATGCGATGTTCTC +
Preference number: 4 (lower is better)
Translates to: QIVTCILCSHTLKSSKSLVCIPS*LKCDVL
Trigger: GAGAACATCGCATTTCAACCAAGATGGAATACAAAC...AAGTGACTTGCTGCTTTTTAGTGTGTGGCTGCATAATATACAAGTCACAATTTG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR CAA 90 bp GTCAGGAGAACACAACTGAGGTGTCGCCACAGAGCCCTTCCCCACGCAAGACCCGTAGCTTGCCATAGGTaGGTGTGCTTTCCCGTCTTC +
Preference number: 5 (lower is better)
Translates to: VRRTQLRCRHRALPHARPVACHR*VCFPVF
Trigger: GAAGACGGGAAAGCACACCAACCTATGGCAAGCTAC...GGGTCTTGCGTGGGGAAGGGCTCTGTGGCGACACCTCAGTTGTGTTCTCCTGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS CCA 90 bp ATGGGCCATAATGATCCTGGAGGTGGCACTTCTGAGTTGGAAGAGTaGACTGCCGCCTGTGCTCAGGGGAGATGGCTGCTGAATCCGAGA +
Preference number: 5 (lower is better)
Translates to: MGHNDPGGGTSELEE*TAACAQGRWLLNPR
Trigger: TCTCGGATTCAGCAGCCATCTCCCCTGAGCACAGGCGGCAGTCCACTCTTCCAACTCAGAAGTGCCACCTCCAGGATCATTATGGCCCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026750.15
ENSMUST00000112513.2
CDS GCA 90 bp AGACTGAGACTGAGAGGTCTCTGTGGAGGAAAGCCGGCTGTGTTTTaGTTCCACATAAGGACTGGCACAACTCATAGAGGGAGGCCGTGG +
Preference number: 5 (lower is better)
Translates to: RLRLRGLCGGKPAVF*FHIRTGTTHRGRPW
Trigger: CCACGGCCTCCCTCTATGAGTTGTGCCAGTCCTTATGTGGAAGCAAAACACAGCCGGCTTTCCTCCACAGAGACCTCTCAGTCTCAGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026750.15
ENSMUST00000112513.2
CDS CCA 90 bp ACTTCTGAGTTGGAAGAGTGGACTGCCGCCTGTGCTCAGGGGAGATaGCTGCTGAATCCGAGAAGACAGAATCTTCCAGAGGCAGAGTCT +
Preference number: 5 (lower is better)
Translates to: TSELEEWTAACAQGR*LLNPRRQNLPEAES
Trigger: AGACTCTGCCTCTGGAAGATTCTGTCTTCTCGGATTCAGCAGCCATCTCCCCTGAGCACAGGCGGCAGTCCACTCTTCCAACTCAGAAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026750.15
ENSMUST00000112513.2
CDS CCA 90 bp CACCTCTGGTGGCTGTATGTCATCTTGTGGGTCACAGGCACTAACTaGTGTGTTCAGACAGCAATGGTTGAACCCGCTATCTCGAGGCAG +
Preference number: 5 (lower is better)
Translates to: HLWWLYVILWVTGTN*CVQTAMVEPAISRQ
Trigger: CTGCCTCGAGATAGCGGGTTCAACCATTGCTGTCTGAACACACCAGTTAGTGCCTGTGACCCACAAGATGACATACAGCCACCAGAGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026750.15
ENSMUST00000112513.2
CDS CCA 90 bp TCCTGCTGCTTCCTCTTCTTCCTCCTCCTCTTCTTCCTCCACCTCTaGTGGCTGTATGTCATCTTGTGGGTCACAGGCACTAACTGGTGT +
Preference number: 5 (lower is better)
Translates to: SCCFLFFLLLFFLHL*WLYVILWVTGTNWC
Trigger: ACACCAGTTAGTGCCTGTGACCCACAAGATGACATACAGCCACCAGAGGTGGAGGAAGAAGAGGAGGAGGAAGAAGAGGAAGCAGCAGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026750.15
ENSMUST00000112513.2
CDS-3UTR CAA 90 bp GTCAGGAGAACACAACTGAGGTGTCGCCACAGAGCCCTTCCCCACGCAAGACCCCTCGCTCCAGTAATCTaGTTCTTGTTTAATCCTCTC +
Preference number: 5 (lower is better)
Translates to: VRRTQLRCRHRALPHARPLAPVI*FLFNPL
Trigger: GAGAGGATTAAACAAGAACAAGATTACTGGAGCGAG...GGGTCTTGCGTGGGGAAGGGCTCTGTGGCGACACCTCAGTTGTGTTCTCCTGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS CCA 90 bp TGCTGCTTCCTCTTCTTCCTCCTCCTCTTCTTCCTCCACCTCTGGTaGCTGTATGTCATCTTGTGGGTCACAGGCACTAACTGGTGTGTT +
Preference number: 5 (lower is better)
Translates to: CCFLFFLLLFFLHLW*LYVILWVTGTNWCV
Trigger: AACACACCAGTTAGTGCCTGTGACCCACAAGATGACATACAGCCACCAGAGGTGGAGGAAGAAGAGGAGGAGGAAGAAGAGGAAGCAGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026750.15
ENSMUST00000112513.2
CDS-3UTR CAA 90 bp GACGAGGCCATTTTAGTTGCTTGCAAGAGGTTGATGTTGAGTCTGCGCCGTGCCCATCCAGTCCACTACTaGACTCGGAGACCATTTGCT +
Preference number: 5 (lower is better)
Translates to: DEAILVACKRLMLSLRRAHPVHY*TRRPFA
Trigger: AGCAAATGGTCTCCGAGTCAAGTAGTGGACTGGATG...GGCACGGCGCAGACTCAACATCAACCTCTTGCAAGCAACTAAAATGGCCTCGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR CAA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGGTAGCTTGCCATAGGTaGGTGTGCTTTCCCGTCTTC +
Preference number: 5 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGVACHR*VCFPVF
Trigger: GAAGACGGGAAAGCACACCAACCTATGGCAAGCTAC...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR CAA 90 bp GTCAGGAGAACACAACTGAGGTGTCGCCACAGAGCCCTTCCCCACGCAAGACCCATTCTTCTTTTGCTCTaGCCTGATATAGCTCCTTTG +
Preference number: 5 (lower is better)
Translates to: VRRTQLRCRHRALPHARPILLLL*PDIAPL
Trigger: CAAAGGAGCTATATCAGGCAAGAGCAAAAGAAGAAT...GGGTCTTGCGTGGGGAAGGGCTCTGTGGCGACACCTCAGTTGTGTTCTCCTGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR CAA 90 bp GACGAGGCCATTTTAGTTGCTTGCAAGAGGTTGATGTTGAGTCTGCGCCGTGCCGAGGGCTGTCTTGTTTaGGTGTCGATGGAGTATCTG +
Preference number: 5 (lower is better)
Translates to: DEAILVACKRLMLSLRRAEGCLV*VSMEYL
Trigger: CAGATACTCCATCGACACCAAAACAAGACAGCCCTC...GGCACGGCGCAGACTCAACATCAACCTCTTGCAAGCAACTAAAATGGCCTCGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR CAA 90 bp GACGAGGCCATTTTAGTTGCTTGCAAGAGGTTGATGTTGAGTCTGCGCCGTGCCTGGCTGTATGTCATCTaGTGGGTCACAGGCACTAAC +
Preference number: 5 (lower is better)
Translates to: DEAILVACKRLMLSLRRAWLYVI*WVTGTN
Trigger: GTTAGTGCCTGTGACCCACAAGATGACATACAGCCA...GGCACGGCGCAGACTCAACATCAACCTCTTGCAAGCAACTAAAATGGCCTCGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR CAA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGAGTGTAAGCCTGAGCTaGTCAGCGGTGTCTCGATTA +
Preference number: 5 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGSVSLS*SAVSRL
Trigger: TAATCGAGACACCGCTGACAAGCTCAGGCTTACACT...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR CAA 90 bp TTGATGTTGAGTCTGCGCCGTGCCACCTCTCTTCCATCTAAATTCTCTAAACATGGTGGCACTTCTGAGTaGGAAGAGTGGACTGCCGCC +
Preference number: 5 (lower is better)
Translates to: LMLSLRRATSLPSKFSKHGGTSE*EEWTAA
Trigger: GGCGGCAGTCCACTCTTCCAACTCAGAAGTGCCACC...ATGTTTAGAGAATTTAGATGGAAGAGAGGTGGCACGGCGCAGACTCAACATCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR CAA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGGTAAAACTTCGAGGCTaGCCCCCATTGCCGTTTAAC +
Preference number: 5 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGVKLRG*PPLPFN
Trigger: GTTAAACGGCAATGGGGGCAAGCCTCGAAGTTTTAC...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR CAA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGTGGCTGTATGTCATCTaGTGGGTCACAGGCACTAAC +
Preference number: 5 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGWLYVI*WVTGTN
Trigger: GTTAGTGCCTGTGACCCACAAGATGACATACAGCCA...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS CCA 90 bp TCATCTTGTGGGTCACAGGCACTAACTGGTGTGTTCAGACAGCAATaGTTGAACCCGCTATCTCGAGGCAGAGTAAAACTTCGAGGCTTG +
Preference number: 5 (lower is better)
Translates to: SSCGSQALTGVFRQQ*LNPLSRGRVKLRGL
Trigger: CAAGCCTCGAAGTTTTACTCTGCCTCGAGATAGCGGGTTCAACCATTGCTGTCTGAACACACCAGTTAGTGCCTGTGACCCACAAGATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026750.15
ENSMUST00000112513.2
CDS-3UTR CAA 90 bp AACACAACTGAGGTGTCGCCACAGAGCCCTTCCCCACGCAAGACCCTTTTACCCTATCACCCTTCTTTTTaGACTTCTTCCCTGTGTCTT +
Preference number: 5 (lower is better)
Translates to: NTTEVSPQSPSPRKTLLPYHPSF*TSSLCL
Trigger: AAGACACAGGGAAGAAGTCAAAAAAGAAGGGTGATA...GGGTAAAAGGGTCTTGCGTGGGGAAGGGCTCTGTGGCGACACCTCAGTTGTGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR CAA 90 bp TACCCTCTGTTCTCCCATAAAAAGGGCAGTTTTCGGCTACCGTGTTCCATCTTGTTCAGACAGCAATGGTaGAACCCGCTATCTCGAGGC +
Preference number: 5 (lower is better)
Translates to: YPLFSHKKGSFRLPCSILFRQQW*NPLSRG
Trigger: GCCTCGAGATAGCGGGTTCAACCATTGCTGTCTGAA...CAAGATGGAACACGGTAGCCGAAAACTGCCCTTTTTATGGGAGAACAGAGGGTA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR CAA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGTGTGCCCATGATGTCTaGTCTCAATGCATCCATTTG +
Preference number: 5 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGCAHDV*SQCIHL
Trigger: CAAATGGATGCATTGAGACAAGACATCATGGGCACA...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS TCA 90 bp GGGATTCAGACCCCTTATGAACTGGCTTGCCCACCATATGTCCTCTaGGGTCTTCACAAGGAAGGTTTCCTTTTTCATCCCTGGGAATAT +
Preference number: 5 (lower is better)
Translates to: GIQTPYELACPPYVL*GLHKEGFLFHPWEY
Trigger: ATATTCCCAGGGATGAAAAAGGAAACCTTCCTTGTGAAGACCTCAGAGGACATATGGTGGGCAAGCCAGTTCATAAGGGGTCTGAATCCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026750.15
ENSMUST00000112513.2
CDS-3UTR CAA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGTTGAATGCATATTTCTaGCGGCATTCACTGGCTCTA +
Preference number: 5 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGLNAYF*RHSLAL
Trigger: TAGAGCCAGTGAATGCCGCAAGAAATATGCATTCAA...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR CAA 90 bp CTCATTCCAGCTTATGAGGCAACATCACTTCTATGTAAGTGCCAAGGAAAAGGACGAGGCTTGCCCCCATaGCCGTTTAACACTTGCATC +
Preference number: 5 (lower is better)
Translates to: LIPAYEATSLLCKCQGKGRGLPP*PFNTCI
Trigger: GATGCAAGTGTTAAACGGCAATGGGGGCAAGCCTCG...TCCTTTTCCTTGGCACTTACATAGAAGTGATGTTGCCTCATAAGCTGGAATGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS TCA 90 bp CCAGGTGAGCAGACTGTGAAACCAGAGGATCTGATGACAGGGATATaGTGTGGTCACAGACTCCAGAGAGAGTTTTACACACATGAAGAA +
Preference number: 5 (lower is better)
Translates to: PGEQTVKPEDLMTGI*CGHRLQREFYTHEE
Trigger: TTCTTCATGTGTGTAAAACTCTCTCTGGAGTCTGTGACCACATCATATCCCTGTCATCAGATCCTCTGGTTTCACAGTCTGCTCACCTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026750.15
ENSMUST00000112513.2
CDS CCA 90 bp TCACAGCAGCAAATGGTGACCTGTCCAACCAAGCAAGAAGACTCTTaGCTGCTCCAATCAGATCCACAACTGAGGTCAAAAAGTCATTTG +
Preference number: 5 (lower is better)
Translates to: SQQQMVTCPTKQEDS*LLQSDPQLRSKSHL
Trigger: CAAATGACTTTTTGACCTCAGTTGTGGATCTGATTGGAGCAGCCAAGAGTCTTCTTGCTTGGTTGGACAGGTCACCATTTGCTGCTGTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026750.15
ENSMUST00000112513.2
CDS CCA 90 bp ATTCCATCTTGGTTGAAATGCGATGTTCTCCTAGTGGTGACAGACTaGCTTCCTCCAGTGCCCTGTATAAATCTTGCAAGGAGTCTCCTA +
Preference number: 5 (lower is better)
Translates to: IPSWLKCDVLLVVTD*LPPVPCINLARSLL
Trigger: TAGGAGACTCCTTGCAAGATTTATACAGGGCACTGGAGGAAGCCAGTCTGTCACCACTAGGAGAACATCGCATTTCAACCAAGATGGAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR CAA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGGTCTTCCTTGACTACTaGATCGTCCCTTTTCATATT +
Preference number: 5 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGVFLDY*IVPFHI
Trigger: AATATGAAAAGGGACGATCAAGTAGTCAAGGAAGAC...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR CAA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGTATCACCCTTCTTTTTaGACTTCTTCCCTGTGTCTT +
Preference number: 5 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGYHPSF*TSSLCL
Trigger: AAGACACAGGGAAGAAGTCAAAAAAGAAGGGTGATA...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR CAA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGTTTTTCTTCTTTGATTaGTGCTGCAGAGAGGACTGT +
Preference number: 5 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGFFFFD*CCREDC
Trigger: ACAGTCCTCTCTGCAGCACAAATCAAAGAAGAAAAA...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR CAA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGCTTTGTTTTTCTTCTTaGATTTGTGCTGCAGAGAGG +
Preference number: 5 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGLCFSS*ICAAER
Trigger: CCTCTCTGCAGCACAAATCAAAGAAGAAAAACAAAG...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR CAA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGATTCTTCTTTTGCTCTaGCCTGATATAGCTCCTTTG +
Preference number: 5 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGILLLL*PDIAPL
Trigger: CAAAGGAGCTATATCAGGCAAGAGCAAAAGAAGAAT...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR CAA 90 bp TGGGTTGAGTGCCAACAGAAGTGGATCCGATTTGGCATGGAGAGGTTCTACCAATTGAATGCATATTTCTaGCGGCATTCACTGGCTCTA +
Preference number: 5 (lower is better)
Translates to: WVECQQKWIRFGMERFYQLNAYF*RHSLAL
Trigger: TAGAGCCAGTGAATGCCGCAAGAAATATGCATTCAA...TTGGTAGAACCTCTCCATGCCAAATCGGATCCACTTCTGTTGGCACTCAACCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR CAA 90 bp CAAATTGTGACTTGTATATTATGCAGCCACACACTAAAAAGCAGCAAGTCACTTGGTGGCACTTCTGAGTaGGAAGAGTGGACTGCCGCC +
Preference number: 5 (lower is better)
Translates to: QIVTCILCSHTLKSSKSLGGTSE*EEWTAA
Trigger: GGCGGCAGTCCACTCTTCCAACTCAGAAGTGCCACC...AAGTGACTTGCTGCTTTTTAGTGTGTGGCTGCATAATATACAAGTCACAATTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS CCA 90 bp CAGAGAGGACTGTTGAAATGTATGGTACAGTGTGGTTTCTGGCACTaGTGTGCCCATGATGTCTTGTCTCAATGCATCCATTTGCAAACT +
Preference number: 5 (lower is better)
Translates to: QRGLLKCMVQCGFWH*CAHDVLSQCIHLQT
Trigger: AGTTTGCAAATGGATGCATTGAGACAAGACATCATGGGCACACCAGTGCCAGAAACCACACTGTACCATACATTTCAACAGTCCTCTCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026750.15
ENSMUST00000112513.2
CDS-3UTR CAA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGAATCCTGTTGCACAATaGTTGTTAATTCCAAGCAGA +
Preference number: 5 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGNPVAQ*LLIPSR
Trigger: TCTGCTTGGAATTAACAACAATTGTGCAACAGGATT...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR CAA 90 bp CTGCCCCTCTTAATATCCCTTTATGGAGGCCCCAAATCCACAACACTTGATGATGGTCCAGAAATGAATTaGGGGATTCAGACCCCTTAT +
Preference number: 5 (lower is better)
Translates to: LPLLISLYGGPKSTTLDDGPEMN*GIQTPY
Trigger: ATAAGGGGTCTGAATCCCCAAATTCATTTCTGGACC...ATCATCAAGTGTTGTGGATTTGGGGCCTCCATAAAGGGATATTAAGAGGGGCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR CAA 90 bp TGGGTTGAGTGCCAACAGAAGTGGATCCGATTTGGCATGGAGAGGTTCTACCAATTTTTCTTCTTTGATTaGTGCTGCAGAGAGGACTGT +
Preference number: 5 (lower is better)
Translates to: WVECQQKWIRFGMERFYQFFFFD*CCREDC
Trigger: ACAGTCCTCTCTGCAGCACAAATCAAAGAAGAAAAA...TTGGTAGAACCTCTCCATGCCAAATCGGATCCACTTCTGTTGGCACTCAACCCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR CAA 90 bp GATTCCAATGGGTTGAGTGCCAACAGAAGTGGATCCGATTTGGCATGGAGAGGTCTTTGTTTTTCTTCTTaGATTTGTGCTGCAGAGAGG +
Preference number: 5 (lower is better)
Translates to: DSNGLSANRSGSDLAWRGLCFSS*ICAAER
Trigger: CCTCTCTGCAGCACAAATCAAAGAAGAAAAACAAAG...ACCTCTCCATGCCAAATCGGATCCACTTCTGTTGGCACTCAACCCATTGGAATC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR CAA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGAGTTTGTATTCCATCTaGGTTGAAATGCGATGTTCT +
Preference number: 5 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGSLYSI*VEMRCS
Trigger: AGAACATCGCATTTCAACCAAGATGGAATACAAACT...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR CAA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTGTTAGCTGCCTTTCTGGGGAAGTCAAGTCTGGATaGTCTAGGACTTTATCAATA +
Preference number: 5 (lower is better)
Translates to: VCVCVCVCVCVAVSCLSGEVKSG*SRTLSI
Trigger: TATTGATAAAGTCCTAGACAATCCAGACTTGACTTC...CCCAGAAAGGCAGCTAACAGCTACACACACACACACACACACACACACACACAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR CAA 90 bp TCCCTTTATGGAGGCCCCAAATCCACAACACTTGATGATCTAAGCTTTTTACAACAAGCAAGAAGACTCTaGGCTGCTCCAATCAGATCC +
Preference number: 5 (lower is better)
Translates to: SLYGGPKSTTLDDLSFLQQARRL*AAPIRS
Trigger: GGATCTGATTGGAGCAGCCAAGAGTCTTCTTGCTTG...TTGTAAAAAGCTTAGATCATCAAGTGTTGTGGATTTGGGGCCTCCATAAAGGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR CAA 90 bp TACCCTCTGTTCTCCCATAAAAAGGGCAGTTTTCGGCTACCGTGTTCCATCTTGGTCTTCCTTGACTACTaGATCGTCCCTTTTCATATT +
Preference number: 5 (lower is better)
Translates to: YPLFSHKKGSFRLPCSILVFLDY*IVPFHI
Trigger: AATATGAAAAGGGACGATCAAGTAGTCAAGGAAGAC...CAAGATGGAACACGGTAGCCGAAAACTGCCCTTTTTATGGGAGAACAGAGGGTA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR CAA 90 bp CTGCCCCTCTTAATATCCCTTTATGGAGGCCCCAAATCCACAACACTTGATGATCTCTCTTCATCTTATTaGGATCTTCATAGTCCCCCA +
Preference number: 5 (lower is better)
Translates to: LPLLISLYGGPKSTTLDDLSSSY*DLHSPP
Trigger: TGGGGGACTATGAAGATCCAAATAAGATGAAGAGAG...ATCATCAAGTGTTGTGGATTTGGGGCCTCCATAAAGGGATATTAAGAGGGGCAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR CAA 90 bp CAAATTGTGACTTGTATATTATGCAGCCACACACTAAAAAGCAGCAAGTCACTTCGAGGCTTGCCCCCATaGCCGTTTAACACTTGCATC +
Preference number: 5 (lower is better)
Translates to: QIVTCILCSHTLKSSKSLRGLPP*PFNTCI
Trigger: GATGCAAGTGTTAAACGGCAATGGGGGCAAGCCTCG...AAGTGACTTGCTGCTTTTTAGTGTGTGGCTGCATAATATACAAGTCACAATTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS TCA 90 bp CATCTCATATTTTTCAGTAAAGCTGGTGCTGAGGTAAGCATGCTCTaGGGTCGCTTTTTCAAAGTTAAGATAACACCACTCGGGTCCTCT +
Preference number: 5 (lower is better)
Translates to: HLIFFSKAGAEVSML*GRFFKVKITPLGSS
Trigger: AGAGGACCCGAGTGGTGTTATCTTAACTTTGAAAAAGCGACCTCAGAGCATGCTTACCTCAGCACCAGCTTTACTGAAAAATATGAGATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000026750.15
ENSMUST00000112513.2
CDS GCA 90 bp GAACATCTACTTCAGAAGAGATACTTAGTGGGTCATTTGAGGTGGTaGTTTGACAGATATCCAAGAAAAGGTCGAGGTACATCTGCTTCC +
Preference number: 5 (lower is better)
Translates to: EHLLQKRYLVGHLRW*FDRYPRKGRGTSAS
Trigger: GGAAGCAGATGTACCTCGACCTTTTCTTGGATATCTGTCAAAGCACCACCTCAAATGACCCACTAAGTATCTCTTCTGAAGTAGATGTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR CAA 90 bp ATTGGTTTTGATCTTATGCTAGTCCCACTGTCGAAAGCTCGAATTCTTCTTAAGAAAGCCGGCTGTGTTTaGCTTCCACATAAGGACTGG +
Preference number: 5 (lower is better)
Translates to: IGFDLMLVPLSKARILLKKAGCV*LPHKDW
Trigger: CCAGTCCTTATGTGGAAGCAAAACACAGCCGGCTTT...CTTAAGAAGAATTCGAGCTTTCGACAGTGGGACTAGCATAAGATCAAAACCAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR CAA 90 bp CAAATTGTGACTTGTATATTATGCAGCCACACACTAAAAAGCAGCAAGTCACTTTTCAGACAGCAATGGTaGAACCCGCTATCTCGAGGC +
Preference number: 5 (lower is better)
Translates to: QIVTCILCSHTLKSSKSLFRQQW*NPLSRG
Trigger: GCCTCGAGATAGCGGGTTCAACCATTGCTGTCTGAA...AAGTGACTTGCTGCTTTTTAGTGTGTGGCTGCATAATATACAAGTCACAATTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS TCA 90 bp TCTACTTCAGAAGAGATACTTAGTGGGTCATTTGAGGTGGTGCTTTaGCAGATATCCAAGAAAAGGTCGAGGTACATCTGCTTCCATTGT +
Preference number: 5 (lower is better)
Translates to: STSEEILSGSFEVVL*QISKKRSRYICFHC
Trigger: ACAATGGAAGCAGATGTACCTCGACCTTTTCTTGGATATCTGTCAAAGCACCACCTCAAATGACCCACTAAGTATCTCTTCTGAAGTAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR CAA 90 bp CAAATTGTGACTTGTATATTATGCAGCCACACACTAAAAAGCAGCAAGTCACTTCATCCAGTCCACTACTaGACTCGGAGACCATTTGCT +
Preference number: 5 (lower is better)
Translates to: QIVTCILCSHTLKSSKSLHPVHY*TRRPFA
Trigger: AGCAAATGGTCTCCGAGTCAAGTAGTGGACTGGATG...AAGTGACTTGCTGCTTTTTAGTGTGTGGCTGCATAATATACAAGTCACAATTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR CAA 90 bp CAAATTGTGACTTGTATATTATGCAGCCACACACTAAAAAGCAGCAAGTCACTTCAAGCAAGAAGACTCTaGGCTGCTCCAATCAGATCC +
Preference number: 5 (lower is better)
Translates to: QIVTCILCSHTLKSSKSLQARRL*AAPIRS
Trigger: GGATCTGATTGGAGCAGCCAAGAGTCTTCTTGCTTG...AAGTGACTTGCTGCTTTTTAGTGTGTGGCTGCATAATATACAAGTCACAATTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR CAA 90 bp TCCCTTTATGGAGGCCCCAAATCCACAACACTTGATGATCTAAGCTTTTTACAATGTGCCCATGATGTCTaGTCTCAATGCATCCATTTG +
Preference number: 5 (lower is better)
Translates to: SLYGGPKSTTLDDLSFLQCAHDV*SQCIHL
Trigger: CAAATGGATGCATTGAGACAAGACATCATGGGCACA...TTGTAAAAAGCTTAGATCATCAAGTGTTGTGGATTTGGGGCCTCCATAAAGGGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR CAA 90 bp CAAATTGTGACTTGTATATTATGCAGCCACACACTAAAAAGCAGCAAGTCACTTGAGGGCTGTCTTGTTTaGGTGTCGATGGAGTATCTG +
Preference number: 5 (lower is better)
Translates to: QIVTCILCSHTLKSSKSLEGCLV*VSMEYL
Trigger: CAGATACTCCATCGACACCAAAACAAGACAGCCCTC...AAGTGACTTGCTGCTTTTTAGTGTGTGGCTGCATAATATACAAGTCACAATTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR CAA 90 bp CAAATTGTGACTTGTATATTATGCAGCCACACACTAAAAAGCAGCAAGTCACTTAAAGCCGGCTGTGTTTaGCTTCCACATAAGGACTGG +
Preference number: 5 (lower is better)
Translates to: QIVTCILCSHTLKSSKSLKAGCV*LPHKDW
Trigger: CCAGTCCTTATGTGGAAGCAAAACACAGCCGGCTTT...AAGTGACTTGCTGCTTTTTAGTGTGTGGCTGCATAATATACAAGTCACAATTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR CAA 90 bp ACAGGTATTCATATTATGCAATACCACACACTGCAGCAACAGGAAGAAAAACATAGTGTAAGCCTGAGCTaGTCAGCGGTGTCTCGATTA +
Preference number: 5 (lower is better)
Translates to: TGIHIMQYHTLQQQEEKHSVSLS*SAVSRL
Trigger: TAATCGAGACACCGCTGACAAGCTCAGGCTTACACT...ATGTTTTTCTTCCTGTTGCTGCAGTGTGTGGTATTGCATAATATGAATACCTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR CAA 90 bp ACAGGTATTCATATTATGCAATACCACACACTGCAGCAACAGGAAGAAAAACATGTAAAACTTCGAGGCTaGCCCCCATTGCCGTTTAAC +
Preference number: 5 (lower is better)
Translates to: TGIHIMQYHTLQQQEEKHVKLRG*PPLPFN
Trigger: GTTAAACGGCAATGGGGGCAAGCCTCGAAGTTTTAC...ATGTTTTTCTTCCTGTTGCTGCAGTGTGTGGTATTGCATAATATGAATACCTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS TCA 90 bp TTCTTCAACAATGTTAAACCTCTTTCGATATTCTTGGTCCAGAAATaGATTTGGGGATTCAGACCCCTTATGAACTGGCTTGCCCACCAT +
Preference number: 5 (lower is better)
Translates to: FFNNVKPLSIFLVQK*IWGFRPLMNWLAHH
Trigger: ATGGTGGGCAAGCCAGTTCATAAGGGGTCTGAATCCCCAAATTCATTTCTGGACCAAGAATATCGAAAGAGGTTTAACATTGTTGAAGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026750.15
ENSMUST00000112513.2
CDS GCA 90 bp ACTCTCGCTCCAGTAATCTTGTTCTTGTTTAATCCTCTCTCTTTCTaGATATCCTGCAGTCAGCATGTTAATTCTGTTAAGCCACCTGTT +
Preference number: 5 (lower is better)
Translates to: TLAPVILFLFNPLSF*ISCSQHVNSVKPPV
Trigger: AACAGGTGGCTTAACAGAATTAACATGCTGACTGCAGGATATGCAGAAAGAGAGAGGATTAAACAAGAACAAGATTACTGGAGCGAGAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026750.15
ENSMUST00000112513.2
CDS GCA 90 bp CCAGTAATCTTGTTCTTGTTTAATCCTCTCTCTTTCTGCATATCCTaGAGTCAGCATGTTAATTCTGTTAAGCCACCTGTTCATGTCATC +
Preference number: 5 (lower is better)
Translates to: PVILFLFNPLSFCIS*SQHVNSVKPPVHVI
Trigger: GATGACATGAACAGGTGGCTTAACAGAATTAACATGCTGACTGCAGGATATGCAGAAAGAGAGAGGATTAAACAAGAACAAGATTACTGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026750.15
ENSMUST00000112513.2
CDS-3UTR CAA 90 bp CAAATTGTGACTTGTATATTATGCAGCCACACACTAAAAAGCAGCAAGTCACTTGGTCCAGAAATGAATTaGGGGATTCAGACCCCTTAT +
Preference number: 5 (lower is better)
Translates to: QIVTCILCSHTLKSSKSLGPEMN*GIQTPY
Trigger: ATAAGGGGTCTGAATCCCCAAATTCATTTCTGGACC...AAGTGACTTGCTGCTTTTTAGTGTGTGGCTGCATAATATACAAGTCACAATTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR CAA 90 bp AACATAGTGAGTTTCAGCGCAGGGTGTGTACACCTTGCCTTAATAGATTACACTCCAGTAATCTTGTTCTaGTTTAATCCTCTCTCTTTC +
Preference number: 5 (lower is better)
Translates to: NIVSFSAGCVHLALIDYTPVILF*FNPLSF
Trigger: GAAAGAGAGAGGATTAAACAAGAACAAGATTACTGG...AGTGTAATCTATTAAGGCAAGGTGTACACACCCTGCGCTGAAACTCACTATGTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112513.2
CDS-3UTR CAA 90 bp CAAATTGTGACTTGTATATTATGCAGCCACACACTAAAAAGCAGCAAGTCACTTTACTTAGTGGGTCATTaGAGGTGGTGCTTTGACAGA +
Preference number: 5 (lower is better)
Translates to: QIVTCILCSHTLKSSKSLYLVGH*RWCFDR
Trigger: TCTGTCAAAGCACCACCTCAAATGACCCACTAAGTA...AAGTGACTTGCTGCTTTTTAGTGTGTGGCTGCATAATATACAAGTCACAATTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS TCA 90 bp GCCTGTGCAGTTTCTCATTCATCACAGGATCATTACACCGTTTTATaGATGATAGTTTGTATTCCATCTTGGTTGAAATGCGATGTTCTC +
Preference number: 5 (lower is better)
Translates to: ACAVSHSSQDHYTVL*MIVCIPSWLKCDVL
Trigger: GAGAACATCGCATTTCAACCAAGATGGAATACAAACTATCATTCATAAAACGGTGTAATGATCCTGTGATGAATGAGAAACTGCACAGGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR CAA 90 bp CAAATTGTGACTTGTATATTATGCAGCCACACACTAAAAAGCAGCAAGTCACTTCTCTCTTCATCTTATTaGGATCTTCATAGTCCCCCA +
Preference number: 5 (lower is better)
Translates to: QIVTCILCSHTLKSSKSLLSSSY*DLHSPP
Trigger: TGGGGGACTATGAAGATCCAAATAAGATGAAGAGAG...AAGTGACTTGCTGCTTTTTAGTGTGTGGCTGCATAATATACAAGTCACAATTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR CAA 90 bp CAAATTGTGACTTGTATATTATGCAGCCACACACTAAAAAGCAGCAAGTCACTTCTCGCTCCAGTAATCTaGTTCTTGTTTAATCCTCTC +
Preference number: 5 (lower is better)
Translates to: QIVTCILCSHTLKSSKSLLAPVI*FLFNPL
Trigger: GAGAGGATTAAACAAGAACAAGATTACTGGAGCGAG...AAGTGACTTGCTGCTTTTTAGTGTGTGGCTGCATAATATACAAGTCACAATTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS-3UTR CAA 90 bp CAAATTGTGACTTGTATATTATGCAGCCACACACTAAAAAGCAGCAAGTCACTTCCAGTAATCTTGTTCTaGTTTAATCCTCTCTCTTTC +
Preference number: 5 (lower is better)
Translates to: QIVTCILCSHTLKSSKSLPVILF*FNPLSF
Trigger: GAAAGAGAGAGGATTAAACAAGAACAAGATTACTGG...AAGTGACTTGCTGCTTTTTAGTGTGTGGCTGCATAATATACAAGTCACAATTTG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS CCA 72 bp AATGATCCTGGAGGTGGCACTTCTGAGTTGGAAGAGTaGACTGCCGCCTGTGCTCAGGGGAGATGGCTGCTG +
Preference number: 6 (lower is better)
Translates to: NDPGGGTSELEE*TAACAQGRWLL
Trigger: CAGCAGCCATCTCCCCTGAGCACAGGCGGCAGTCCACTCTTCCAACTCAGAAGTGCCACCTCCAGGATCATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026750.15
ENSMUST00000112513.2
CDS CAA 90 bp CTAAAGGGTATGGGCCATAATGATCCTGGAGGTGGCACTTCTGAGTaGGAAGAGTGGACTGCCGCCTGTGCTCAGGGGAGATGGCTGCTG +
Preference number: 6 (lower is better)
Translates to: LKGMGHNDPGGGTSE*EEWTAACAQGRWLL
Trigger: CAGCAGCCATCTCCCCTGAGCACAGGCGGCAGTCCACTCTTCCAACTCAGAAGTGCCACCTCCAGGATCATTATGGCCCATACCCTTTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026750.15
ENSMUST00000112513.2
CDS TCA 72 bp CTGTCTTGCGAATGGGAGACACAGCACTGCTCCCAGTaGCTTCCTGGCGGAACTCCTCGTGTGAAGACTGAG +
Preference number: 6 (lower is better)
Translates to: LSCEWETQHCSQ*LPGGTPRVKTE
Trigger: CTCAGTCTTCACACGAGGAGTTCCGCCAGGAAGTCACTGGGAGCAGTGCTGTGTCTCCCATTCGCAAGACAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026750.15
ENSMUST00000112513.2
CDS CAA 72 bp ATGGGCCATAATGATCCTGGAGGTGGCACTTCTGAGTaGGAAGAGTGGACTGCCGCCTGTGCTCAGGGGAGA +
Preference number: 6 (lower is better)
Translates to: MGHNDPGGGTSE*EEWTAACAQGR
Trigger: TCTCCCCTGAGCACAGGCGGCAGTCCACTCTTCCAACTCAGAAGTGCCACCTCCAGGATCATTATGGCCCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026750.15
ENSMUST00000112513.2
CDS CCA 72 bp TTGGAAGAGTGGACTGCCGCCTGTGCTCAGGGGAGATaGCTGCTGAATCCGAGAAGACAGAATCTTCCAGAG +
Preference number: 6 (lower is better)
Translates to: LEEWTAACAQGR*LLNPRRQNLPE
Trigger: CTCTGGAAGATTCTGTCTTCTCGGATTCAGCAGCCATCTCCCCTGAGCACAGGCGGCAGTCCACTCTTCCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026750.15
ENSMUST00000112513.2
CDS CAA 90 bp CAGAATCTTCCAGAGGCAGAGTCTGAAGATAGTGTAAGCCTGAGCTaGTCAGCGGTGTCTCGATTAAATCCTGCCAGGAGCGGCGCTGAC +
Preference number: 6 (lower is better)
Translates to: QNLPEAESEDSVSLS*SAVSRLNPARSGAD
Trigger: GTCAGCGCCGCTCCTGGCAGGATTTAATCGAGACACCGCTGACAAGCTCAGGCTTACACTATCTTCAGACTCTGCCTCTGGAAGATTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026750.15
ENSMUST00000112513.2
CDS TCA 72 bp TGGCCAATACGGCTGACTCCCAGATCTTCTAGCTCCTaGTGTGTAATGCGTAGCAGCTGGTCTCCACTGATC +
Preference number: 6 (lower is better)
Translates to: WPIRLTPRSSSS*CVMRSSWSPLI
Trigger: GATCAGTGGAGACCAGCTGCTACGCATTACACATCAGGAGCTAGAAGATCTGGGAGTCAGCCGTATTGGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026750.15
ENSMUST00000112513.2
CDS GCA 72 bp CTGAGAGGTCTCTGTGGAGGAAAGCCGGCTGTGTTTTaGTTCCACATAAGGACTGGCACAACTCATAGAGGG +
Preference number: 6 (lower is better)
Translates to: LRGLCGGKPAVF*FHIRTGTTHRG
Trigger: CCCTCTATGAGTTGTGCCAGTCCTTATGTGGAAGCAAAACACAGCCGGCTTTCCTCCACAGAGACCTCTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026750.15
ENSMUST00000112513.2
CDS GCA 72 bp AAACTTCGAGGCTTGCCCCCATTGCCGTTTAACACTTaGATCCTCTCGCTCTCTGCTAAAGGGTATGGGCCA +
Preference number: 6 (lower is better)
Translates to: KLRGLPPLPFNT*ILSLSAKGYGP
Trigger: TGGCCCATACCCTTTAGCAGAGAGCGAGAGGATGCAAGTGTTAAACGGCAATGGGGGCAAGCCTCGAAGTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026750.15
ENSMUST00000112513.2
CDS CCA 72 bp TTCCTCTTCTTCCTCCTCCTCTTCTTCCTCCACCTCTaGTGGCTGTATGTCATCTTGTGGGTCACAGGCACT +
Preference number: 6 (lower is better)
Translates to: FLFFLLLFFLHL*WLYVILWVTGT
Trigger: AGTGCCTGTGACCCACAAGATGACATACAGCCACCAGAGGTGGAGGAAGAAGAGGAGGAGGAAGAAGAGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026750.15
ENSMUST00000112513.2
CDS CAA 72 bp CCAGAGGCAGAGTCTGAAGATAGTGTAAGCCTGAGCTaGTCAGCGGTGTCTCGATTAAATCCTGCCAGGAGC +
Preference number: 6 (lower is better)
Translates to: PEAESEDSVSLS*SAVSRLNPARS
Trigger: GCTCCTGGCAGGATTTAATCGAGACACCGCTGACAAGCTCAGGCTTACACTATCTTCAGACTCTGCCTCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026750.15
ENSMUST00000112513.2
CDS CAA 72 bp TCTCGAGGCAGAGTAAAACTTCGAGGCTTGCCCCCATaGCCGTTTAACACTTGCATCCTCTCGCTCTCTGCT +
Preference number: 6 (lower is better)
Translates to: SRGRVKLRGLPP*PFNTCILSLSA
Trigger: AGCAGAGAGCGAGAGGATGCAAGTGTTAAACGGCAATGGGGGCAAGCCTCGAAGTTTTACTCTGCCTCGAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026750.15
ENSMUST00000112513.2
CDS CAA 72 bp AACCCGCTATCTCGAGGCAGAGTAAAACTTCGAGGCTaGCCCCCATTGCCGTTTAACACTTGCATCCTCTCG +
Preference number: 6 (lower is better)
Translates to: NPLSRGRVKLRG*PPLPFNTCILS
Trigger: CGAGAGGATGCAAGTGTTAAACGGCAATGGGGGCAAGCCTCGAAGTTTTACTCTGCCTCGAGATAGCGGGTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026750.15
ENSMUST00000112513.2
CDS CAA 90 bp CAATGGTTGAACCCGCTATCTCGAGGCAGAGTAAAACTTCGAGGCTaGCCCCCATTGCCGTTTAACACTTGCATCCTCTCGCTCTCTGCT +
Preference number: 6 (lower is better)
Translates to: QWLNPLSRGRVKLRG*PPLPFNTCILSLSA
Trigger: AGCAGAGAGCGAGAGGATGCAAGTGTTAAACGGCAATGGGGGCAAGCCTCGAAGTTTTACTCTGCCTCGAGATAGCGGGTTCAACCATTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026750.15
ENSMUST00000112513.2
CDS CAA 90 bp TCTTGTGGGTCACAGGCACTAACTGGTGTGTTCAGACAGCAATGGTaGAACCCGCTATCTCGAGGCAGAGTAAAACTTCGAGGCTTGCCC +
Preference number: 6 (lower is better)
Translates to: SCGSQALTGVFRQQW*NPLSRGRVKLRGLP
Trigger: GGGCAAGCCTCGAAGTTTTACTCTGCCTCGAGATAGCGGGTTCAACCATTGCTGTCTGAACACACCAGTTAGTGCCTGTGACCCACAAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026750.15
ENSMUST00000112513.2
CDS CAA 90 bp AACCCGCTATCTCGAGGCAGAGTAAAACTTCGAGGCTTGCCCCCATaGCCGTTTAACACTTGCATCCTCTCGCTCTCTGCTAAAGGGTAT +
Preference number: 6 (lower is better)
Translates to: NPLSRGRVKLRGLPP*PFNTCILSLSAKGY
Trigger: ATACCCTTTAGCAGAGAGCGAGAGGATGCAAGTGTTAAACGGCAATGGGGGCAAGCCTCGAAGTTTTACTCTGCCTCGAGATAGCGGGTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026750.15
ENSMUST00000112513.2
CDS TCA 72 bp GCACACAAAAGGTCAACTGCTTCCAAGATCAGCTCCTaGTGGCCAATACGGCTGACTCCCAGATCTTCTAGC +
Preference number: 6 (lower is better)
Translates to: AHKRSTASKISS*WPIRLTPRSSS
Trigger: GCTAGAAGATCTGGGAGTCAGCCGTATTGGCCATCAGGAGCTGATCTTGGAAGCAGTTGACCTTTTGTGTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026750.15
ENSMUST00000112513.2
CDS CCA 72 bp GGGTCACAGGCACTAACTGGTGTGTTCAGACAGCAATaGTTGAACCCGCTATCTCGAGGCAGAGTAAAACTT +
Preference number: 6 (lower is better)
Translates to: GSQALTGVFRQQ*LNPLSRGRVKL
Trigger: AAGTTTTACTCTGCCTCGAGATAGCGGGTTCAACCATTGCTGTCTGAACACACCAGTTAGTGCCTGTGACCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026750.15
ENSMUST00000112513.2
CDS CCA 72 bp TGGCTGTATGTCATCTTGTGGGTCACAGGCACTAACTaGTGTGTTCAGACAGCAATGGTTGAACCCGCTATC +
Preference number: 6 (lower is better)
Translates to: WLYVILWVTGTN*CVQTAMVEPAI
Trigger: GATAGCGGGTTCAACCATTGCTGTCTGAACACACCAGTTAGTGCCTGTGACCCACAAGATGACATACAGCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026750.15
ENSMUST00000112513.2
CDS TCA 72 bp ACCCCTTATGAACTGGCTTGCCCACCATATGTCCTCTaGGGTCTTCACAAGGAAGGTTTCCTTTTTCATCCC +
Preference number: 6 (lower is better)
Translates to: TPYELACPPYVL*GLHKEGFLFHP
Trigger: GGGATGAAAAAGGAAACCTTCCTTGTGAAGACCTCAGAGGACATATGGTGGGCAAGCCAGTTCATAAGGGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026750.15
ENSMUST00000112513.2
CDS GCA 72 bp CGGAGGGCTGTCTTGTTTTGGTGTCGATGGAGTATCTaGTTCTTCTTTGTCACTCTCGCTCCAGTAATCTTG +
Preference number: 6 (lower is better)
Translates to: RRAVLFWCRWSI*FFFVTLAPVIL
Trigger: CAAGATTACTGGAGCGAGAGTGACAAAGAAGAAGCAGATACTCCATCGACACCAAAACAAGACAGCCCTCCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026750.15
ENSMUST00000112513.2
CDS CCA 72 bp TGGTTGAAATGCGATGTTCTCCTAGTGGTGACAGACTaGCTTCCTCCAGTGCCCTGTATAAATCTTGCAAGG +
Preference number: 6 (lower is better)
Translates to: WLKCDVLLVVTD*LPPVPCINLAR
Trigger: CCTTGCAAGATTTATACAGGGCACTGGAGGAAGCCAGTCTGTCACCACTAGGAGAACATCGCATTTCAACCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS CAA 72 bp CAGTGTGGTTTCTGGCACTGGTGTGCCCATGATGTCTaGTCTCAATGCATCCATTTGCAAACTAGGCAGCAA +
Preference number: 6 (lower is better)
Translates to: QCGFWHWCAHDV*SQCIHLQTRQQ
Trigger: TTGCTGCCTAGTTTGCAAATGGATGCATTGAGACAAGACATCATGGGCACACCAGTGCCAGAAACCACACTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026750.15
ENSMUST00000112513.2
CDS CAA 90 bp TCTTGGCTGCTCCAATCAGATCCACAACTGAGGTCAAAAAGTCATTaGGTAATTTTCGGCTGGTCCTCCCATCATAATGGCCGCTCCTTC +
Preference number: 6 (lower is better)
Translates to: SWLLQSDPQLRSKSH*VIFGWSSHHNGRSF
Trigger: GAAGGAGCGGCCATTATGATGGGAGGACCAGCCGAAAATTACCAAATGACTTTTTGACCTCAGTTGTGGATCTGATTGGAGCAGCCAAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026750.15
ENSMUST00000112513.2
CDS CAA 90 bp GTCACAGCAGCAAATGGTGACCTGTCCAACCAAGCAAGAAGACTCTaGGCTGCTCCAATCAGATCCACAACTGAGGTCAAAAAGTCATTT +
Preference number: 6 (lower is better)
Translates to: VTAANGDLSNQARRL*AAPIRSTTEVKKSF
Trigger: AAATGACTTTTTGACCTCAGTTGTGGATCTGATTGGAGCAGCCAAGAGTCTTCTTGCTTGGTTGGACAGGTCACCATTTGCTGCTGTGAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026750.15
ENSMUST00000112513.2
CDS CCA 72 bp CAACTGAGGTCAAAAAGTCATTTGGTAATTTTCGGCTaGTCCTCCCATCATAATGGCCGCTCCTTCTCCTTC +
Preference number: 6 (lower is better)
Translates to: QLRSKSHLVIFG*SSHHNGRSFSF
Trigger: GAAGGAGAAGGAGCGGCCATTATGATGGGAGGACCAGCCGAAAATTACCAAATGACTTTTTGACCTCAGTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026750.15
ENSMUST00000112513.2
CDS TCA 72 bp AAACAGTCATCAAGACCTTTCATCCAGTCCACTACTTaGCTCGGAGACCATTTGCTCACCGGTTCCATTATC +
Preference number: 6 (lower is better)
Translates to: KQSSRPFIQSTT*LGDHLLTGSII
Trigger: GATAATGGAACCGGTGAGCAAATGGTCTCCGAGTCAAGTAGTGGACTGGATGAAAGGTCTTGATGACTGTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026750.15
ENSMUST00000112513.2
CDS CAA 72 bp CAAACAGTCATCAAGACCTTTCATCCAGTCCACTACTaGACTCGGAGACCATTTGCTCACCGGTTCCATTAT +
Preference number: 6 (lower is better)
Translates to: QTVIKTFHPVHY*TRRPFAHRFHY
Trigger: ATAATGGAACCGGTGAGCAAATGGTCTCCGAGTCAAGTAGTGGACTGGATGAAAGGTCTTGATGACTGTTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026750.15
ENSMUST00000112513.2
CDS TCA 72 bp TTGTCTCAATGCATCCATTTGCAAACTAGGCAGCAATaGGTAGTGGGCTGGGCTATTACTCTTATCACCCTT +
Preference number: 6 (lower is better)
Translates to: LSQCIHLQTRQQ*VVGWAITLITL
Trigger: AAGGGTGATAAGAGTAATAGCCCAGCCCACTACTCATTGCTGCCTAGTTTGCAAATGGATGCATTGAGACAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026750.15
ENSMUST00000112513.2
CDS TCA 72 bp GAAGAGATACTTAGTGGGTCATTTGAGGTGGTGCTTTaGCAGATATCCAAGAAAAGGTCGAGGTACATCTGC +
Preference number: 6 (lower is better)
Translates to: EEILSGSFEVVL*QISKKRSRYIC
Trigger: GCAGATGTACCTCGACCTTTTCTTGGATATCTGTCAAAGCACCACCTCAAATGACCCACTAAGTATCTCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS GCA 72 bp CTTCAGAAGAGATACTTAGTGGGTCATTTGAGGTGGTaGTTTGACAGATATCCAAGAAAAGGTCGAGGTACA +
Preference number: 6 (lower is better)
Translates to: LQKRYLVGHLRW*FDRYPRKGRGT
Trigger: TGTACCTCGACCTTTTCTTGGATATCTGTCAAAGCACCACCTCAAATGACCCACTAAGTATCTCTTCTGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS CCA 72 bp CTACTTCAGAAGAGATACTTAGTGGGTCATTTGAGGTaGTGCTTTGACAGATATCCAAGAAAAGGTCGAGGT +
Preference number: 6 (lower is better)
Translates to: LLQKRYLVGHLR*CFDRYPRKGRG
Trigger: ACCTCGACCTTTTCTTGGATATCTGTCAAAGCACCACCTCAAATGACCCACTAAGTATCTCTTCTGAAGTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS TCA 72 bp TTTTTCAGTAAAGCTGGTGCTGAGGTAAGCATGCTCTaGGGTCGCTTTTTCAAAGTTAAGATAACACCACTC +
Preference number: 6 (lower is better)
Translates to: FFSKAGAEVSML*GRFFKVKITPL
Trigger: GAGTGGTGTTATCTTAACTTTGAAAAAGCGACCTCAGAGCATGCTTACCTCAGCACCAGCTTTACTGAAAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000026750.15
ENSMUST00000112513.2
CDS GCA 72 bp CTGGCCTTTAAAGTGCTTTTAAGAATTCTCAGCCTGTaGAGTTTCTCATTCATCACAGGATCATTACACCGT +
Preference number: 6 (lower is better)
Translates to: LAFKVLLRILSL*SFSFITGSLHR
Trigger: ACGGTGTAATGATCCTGTGATGAATGAGAAACTGCACAGGCTGAGAATTCTTAAAAGCACTTTAAAGGCCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS CCA 72 bp TCCAAGAAAAGGTCGAGGTACATCTGCTTCCATTGTTaGAATTCTTTAGAAGTCAAGTCTGGATTGTCTAGG +
Preference number: 6 (lower is better)
Translates to: SKKRSRYICFHC*NSLEVKSGLSR
Trigger: CCTAGACAATCCAGACTTGACTTCTAAAGAATTCCAACAATGGAAGCAGATGTACCTCGACCTTTTCTTGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS CAA 90 bp GTAGCTTGCCATAGGTTGGTGTGCTTTCCCGTCTTCCTTGACTACTaGATCGTCCCTTTTCATATTCATAGCAATATAAGACAGTATCTT +
Preference number: 6 (lower is better)
Translates to: VACHRLVCFPVFLDY*IVPFHIHSNIRQYL
Trigger: AAGATACTGTCTTATATTGCTATGAATATGAAAAGGGACGATCAAGTAGTCAAGGAAGACGGGAAAGCACACCAACCTATGGCAAGCTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026750.15
ENSMUST00000112513.2
CDS CAA 90 bp ACAGGATCATTACACCGTTTTATGAATGATAGTTTGTATTCCATCTaGGTTGAAATGCGATGTTCTCCTAGTGGTGACAGACTGGCTTCC +
Preference number: 6 (lower is better)
Translates to: TGSLHRFMNDSLYSI*VEMRCSPSGDRLAS
Trigger: GGAAGCCAGTCTGTCACCACTAGGAGAACATCGCATTTCAACCAAGATGGAATACAAACTATCATTCATAAAACGGTGTAATGATCCTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS CAA 72 bp CATAGGTTGGTGTGCTTTCCCGTCTTCCTTGACTACTaGATCGTCCCTTTTCATATTCATAGCAATATAAGA +
Preference number: 6 (lower is better)
Translates to: HRLVCFPVFLDY*IVPFHIHSNIR
Trigger: TCTTATATTGCTATGAATATGAAAAGGGACGATCAAGTAGTCAAGGAAGACGGGAAAGCACACCAACCTATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026750.15
ENSMUST00000112513.2
CDS CAA 72 bp GATATCCAAGAAAAGGTCGAGGTACATCTGCTTCCATaGTTGGAATTCTTTAGAAGTCAAGTCTGGATTGTC +
Preference number: 6 (lower is better)
Translates to: DIQEKVEVHLLP*LEFFRSQVWIV
Trigger: GACAATCCAGACTTGACTTCTAAAGAATTCCAACAATGGAAGCAGATGTACCTCGACCTTTTCTTGGATATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS CAA 72 bp GAACATCTACTTCAGAAGAGATACTTAGTGGGTCATTaGAGGTGGTGCTTTGACAGATATCCAAGAAAAGGT +
Preference number: 6 (lower is better)
Translates to: EHLLQKRYLVGH*RWCFDRYPRKG
Trigger: ACCTTTTCTTGGATATCTGTCAAAGCACCACCTCAAATGACCCACTAAGTATCTCTTCTGAAGTAGATGTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS GCA 72 bp TTGTTCTTGTTTAATCCTCTCTCTTTCTGCATATCCTaGAGTCAGCATGTTAATTCTGTTAAGCCACCTGTT +
Preference number: 6 (lower is better)
Translates to: LFLFNPLSFCIS*SQHVNSVKPPV
Trigger: AACAGGTGGCTTAACAGAATTAACATGCTGACTGCAGGATATGCAGAAAGAGAGAGGATTAAACAAGAACAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026750.15
ENSMUST00000112513.2
CDS CCA 72 bp TCTTCTTCAACAATGTTAAACCTCTTTCGATATTCTTaGTCCAGAAATGAATTTGGGGATTCAGACCCCTTA +
Preference number: 6 (lower is better)
Translates to: SSSTMLNLFRYS*SRNEFGDSDPL
Trigger: TAAGGGGTCTGAATCCCCAAATTCATTTCTGGACCAAGAATATCGAAAGAGGTTTAACATTGTTGAAGAAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026750.15
ENSMUST00000112513.2
CDS CAA 72 bp TTACACCGTTTTATGAATGATAGTTTGTATTCCATCTaGGTTGAAATGCGATGTTCTCCTAGTGGTGACAGA +
Preference number: 6 (lower is better)
Translates to: LHRFMNDSLYSI*VEMRCSPSGDR
Trigger: TCTGTCACCACTAGGAGAACATCGCATTTCAACCAAGATGGAATACAAACTATCATTCATAAAACGGTGTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS CAA 72 bp TTCCATTGTTGGAATTCTTTAGAAGTCAAGTCTGGATaGTCTAGGACTTTATCAATAATGGCTACTTCCCCT +
Preference number: 6 (lower is better)
Translates to: FHCWNSLEVKSG*SRTLSIMATSP
Trigger: AGGGGAAGTAGCCATTATTGATAAAGTCCTAGACAATCCAGACTTGACTTCTAAAGAATTCCAACAATGGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15
CDS CAA 72 bp ATCACAGGATCATTACACCGTTTTATGAATGATAGTTaGTATTCCATCTTGGTTGAAATGCGATGTTCTCCT +
Preference number: 6 (lower is better)
Translates to: ITGSLHRFMNDS*YSILVEMRCSP
Trigger: AGGAGAACATCGCATTTCAACCAAGATGGAATACAAACTATCATTCATAAAACGGTGTAATGATCCTGTGAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026750.15