Pregenerated sensors for CNIH4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000062169Ensembl transcript IDs: ENSMUST00000111059.2, ENSMUST00000134115.8
Found 82 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CATTTAGATGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACCGACTaGTCTTCCGGAGATCCTGAGTTCAATTCCCAGCAACCACATGGT | + |
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Preference number: 1 (lower is better) Translates to: HLDGWRDGSVVKSTD*SSGDPEFNSQQPHG Trigger: ACCATGTGGTTGCTGGGAATTGAACTCAGGATCTCCGGAAGAGCAGTCGGTGCTCTTAACCACTGAGCCATCTCTCCAGCCATCTAAATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR GCA 90 bp | CGTGATCAGAGTGGACTCTGCCCTCTAGGAGCGCACAATCTAGTTTaGATACAAGAGATGCCACATGGAAAGTGGCGAGTACTTCCCACA | + |
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Preference number: 1 (lower is better) Translates to: RDQSGLCPLGAHNLV*IQEMPHGKWRVLPT Trigger: TGTGGGAAGTACTCGCCACTTTCCATGTGGCATCTCTTGTATGCAAACTAGATTGTGCGCTCCTAGAGGGCAGAGTCCACTCTGATCACG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR CCA 90 bp | AAGGCATCTGCTACAGTTAAAAGCCTAAGGAAACATGACACAATGTaGCTGCATTCCACAGCAGGCTGCACTGGCCAGGCCTTCAACCTT | + |
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Preference number: 1 (lower is better) Translates to: KASATVKSLRKHDTM*LHSTAGCTGQAFNL Trigger: AAGGTTGAAGGCCTGGCCAGTGCAGCCTGCTGTGGAATGCAGCCACATTGTGTCATGTTTCCTTAGGCTTTTAACTGTAGCAGATGCCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR GCA 90 bp | TCTTCTGGGGAAGCACACACTTTGTTTTGCTGCCAAGGTCCATTATaGCACAGTGTACAGTCCTGTTTCCTTATGTGTCAGTGCTTAGGA | + |
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Preference number: 1 (lower is better) Translates to: SSGEAHTLFCCQGPL*HSVQSCFLMCQCLG Trigger: TCCTAAGCACTGACACATAAGGAAACAGGACTGTACACTGTGGCATAATGGACCTTGGCAGCAAAACAAAGTGTGTGCTTCCCCAGAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR TCA 90 bp | TCAAACATTCTAGACAAAAGCCCTCCATTGTGTCTCCCAGTTCTATaGAGCCAACAGCAGGTCTGTTTGAAAAGCTTGAATAACGGTGAG | + |
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Preference number: 1 (lower is better) Translates to: SNILDKSPPLCLPVL*SQQQVCLKSLNNGE Trigger: CTCACCGTTATTCAAGCTTTTCAAACAGACCTGCTGTTGGCTTCATAGAACTGGGAGACACAATGGAGGGCTTTTGTCTAGAATGTTTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR GCA 90 bp | AGCCACATTAACATGACTTTCTTCATATATCCAGATTCGCTGTGTTaGTTTCGGCTCTGGCTTTTCAGACAGTGCAGCTCATCTACTAAG | + |
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Preference number: 1 (lower is better) Translates to: SHINMTFFIYPDSLC*FRLWLFRQCSSSTK Trigger: CTTAGTAGATGAGCTGCACTGTCTGAAAAGCCAGAGCCGAAAGCAACACAGCGAATCTGGATATATGAAGAAAGTCATGTTAATGTGGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR CCA 90 bp | ATGAGGAATAGGTGTCCATTCATAACTAGTGTTTCAGAGTTAAGCTaGGTCTTTATAGACAAGGCAGCTTTCTCAGTCAGTCCTCCTCTG | + |
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Preference number: 1 (lower is better) Translates to: MRNRCPFITSVSELS*VFIDKAAFSVSPPL Trigger: CAGAGGAGGACTGACTGAGAAAGCTGCCTTGTCTATAAAGACCCAGCTTAACTCTGAAACACTAGTTATGAATGGACACCTATTCCTCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR TCA 90 bp | TGCGTTGTTTTTCTAACAGTGACTGACTGGTTTCCTGATTCTCAGTaGCTTCTACCTAGTCACCTCTCCAAATCCATTAAAATATATTAT | + |
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Preference number: 1 (lower is better) Translates to: CVVFLTVTDWFPDSQ*LLPSHLSKSIKIYY Trigger: ATAATATATTTTAATGGATTTGGAGAGGTGACTAGGTAGAAGTCACTGAGAATCAGGAAACCAGTCAGTCACTGTTAGAAAAACAACGCA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR GCA 90 bp | CCTACTTCTACCAAACAGCCACAGAGGAGACAAAACACCTTCATTTaGTGGAGTTCAGAAATCAGAAATCTACAAAAACTCAATTTATTT | + |
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Preference number: 1 (lower is better) Translates to: PTSTKQPQRRQNTFI*WSSEIRNLQKLNLF Trigger: AAATAAATTGAGTTTTTGTAGATTTCTGATTTCTGAACTCCAGCAAATGAAGGTGTTTTGTCTCCTCTGTGGCTGTTTGGTAGAAGTAGG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR-3UTR TCA 90 bp | CCGGCTTTTACAGAGGCCCAGGGAACCAGGTTTCCTTTGCATGCCCTCCCAACCACTCCTAAAAGGTGGTaGCCCACAGGCTGGGAACCA | + |
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Preference number: 2 (lower is better) Translates to: PAFTEAQGTRFPLHALPTTPKRW*PTGWEP Trigger: TGGTTCCCAGCCTGTGGGTCACCACCTTTTAGGAGT...GGTTGGGAGGGCATGCAAAGGAAACCTGGTTCCCTGGGCCTCTGTAAAAGCCGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR-3UTR CCA 90 bp | AGGCCTTCAACCTTAGAGCCTTTACAGAGGGCAGGCAGGAAGAGAGCACAAGAGTGCAACGGCTTGTGCTaGGCTCCCTCCCCGTCCAGA | + |
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Preference number: 2 (lower is better) Translates to: RPSTLEPLQRAGRKRAQECNGLC*APSPSR Trigger: TCTGGACGGGGAGGGAGCCCAGCACAAGCCGTTGCA...CTCTTGTGCTCTCTTCCTGCCTGCCCTCTGTAAAGGCTCTAAGGTTGAAGGCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR-3UTR CCA 90 bp | CCGGCTTTTACAGAGGCCCAGGGAACCAGGTTTCCTTTGCATGCCCTCCCAACCTGTCCCTTCTCTCTTTaGCATGCAAAGCTGGCACAC | + |
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Preference number: 2 (lower is better) Translates to: PAFTEAQGTRFPLHALPTCPFSL*HAKLAH Trigger: GTGTGCCAGCTTTGCATGCCAAAGAGAGAAGGGACA...GGTTGGGAGGGCATGCAAAGGAAACCTGGTTCCCTGGGCCTCTGTAAAAGCCGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR-3UTR CCA 90 bp | GAAACAGTACAGAGGTTTAAAGTCAGAGCAGGTCAGAAGGAAGCCTCTGGGCTCTGCAACGGCTTGTGCTaGGCTCCCTCCCCGTCCAGA | + |
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Preference number: 2 (lower is better) Translates to: ETVQRFKVRAGQKEASGLCNGLC*APSPSR Trigger: TCTGGACGGGGAGGGAGCCCAGCACAAGCCGTTGCA...GAGCCCAGAGGCTTCCTTCTGACCTGCTCTGACTTTAAACCTCTGTACTGTTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR-3UTR TCA 90 bp | AGGCCTTCAACCTTAGAGCCTTTACAGAGGGCAGGCAGGAAGAGAGCACAAGAGACTCCTAAAAGGTGGTaGCCCACAGGCTGGGAACCA | + |
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Preference number: 2 (lower is better) Translates to: RPSTLEPLQRAGRKRAQETPKRW*PTGWEP Trigger: TGGTTCCCAGCCTGTGGGTCACCACCTTTTAGGAGT...CTCTTGTGCTCTCTTCCTGCCTGCCCTCTGTAAAGGCTCTAAGGTTGAAGGCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR-3UTR TCA 90 bp | CCGGCTTTTACAGAGGCCCAGGGAACCAGGTTTCCTTTGCATGCCCTCCCAACCTTTCCTGATTCTCAGTaGCTTCTACCTAGTCACCTC | + |
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Preference number: 2 (lower is better) Translates to: PAFTEAQGTRFPLHALPTFPDSQ*LLPSHL Trigger: GAGGTGACTAGGTAGAAGTCACTGAGAATCAGGAAA...GGTTGGGAGGGCATGCAAAGGAAACCTGGTTCCCTGGGCCTCTGTAAAAGCCGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR-3UTR GCA 90 bp | CCGGCTTTTACAGAGGCCCAGGGAACCAGGTTTCCTTTGCATGCCCTCCCAACCCACACTTTGTTTTGCTaGCAAGGTCCATTATGCCAC | + |
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Preference number: 2 (lower is better) Translates to: PAFTEAQGTRFPLHALPTHTLFC*QGPLCH Trigger: GTGGCATAATGGACCTTGGCAGCAAAACAAAGTGTG...GGTTGGGAGGGCATGCAAAGGAAACCTGGTTCCCTGGGCCTCTGTAAAAGCCGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR-3UTR GCA 90 bp | CTGCCAAGGTCCATTATGCCACAGTGTACAGTCCTGTTTCCTTATGTGTCAGTGTCGCTGGGTACTGCATaGAACGGCTTGTGCTGGGCT | + |
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Preference number: 2 (lower is better) Translates to: LPRSIMPQCTVLFPYVSVSLGTA*NGLCWA Trigger: AGCCCAGCACAAGCCGTTGCATGCAGTACCCAGCGA...CACTGACACATAAGGAAACAGGACTGTACACTGTGGCATAATGGACCTTGGCAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR-3UTR CCA 90 bp | CAGAGGGCAGGCAGGAAGAGAGCACAAGAGGACACCGAGCTGAGCTCCCAATGTTTTGGCATGCAAAGCTaGCACACATTCCTACTTCTA | + |
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Preference number: 2 (lower is better) Translates to: QRAGRKRAQEDTELSSQCFGMQS*HTFLLL Trigger: TAGAAGTAGGAATGTGTGCCAGCTTTGCATGCCAAA...ACATTGGGAGCTCAGCTCGGTGTCCTCTTGTGCTCTCTTCCTGCCTGCCCTCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR-3UTR CCA 90 bp | AGGCCTTCAACCTTAGAGCCTTTACAGAGGGCAGGCAGGAAGAGAGCACAAGAGCAGGCGACATTTAGATaGCTGGAGAGATGGCTCAGT | + |
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Preference number: 2 (lower is better) Translates to: RPSTLEPLQRAGRKRAQEQATFR*LERWLS Trigger: ACTGAGCCATCTCTCCAGCCATCTAAATGTCGCCTG...CTCTTGTGCTCTCTTCCTGCCTGCCCTCTGTAAAGGCTCTAAGGTTGAAGGCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR-3UTR GCA 90 bp | AGGCCTTCAACCTTAGAGCCTTTACAGAGGGCAGGCAGGAAGAGAGCACAAGAGATCTCACAGCTCCTCTaGAAACACCCTCATCACCAT | + |
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Preference number: 2 (lower is better) Translates to: RPSTLEPLQRAGRKRAQEISQLL*KHPHHH Trigger: ATGGTGATGAGGGTGTTTGCAGAGGAGCTGTGAGAT...CTCTTGTGCTCTCTTCCTGCCTGCCCTCTGTAAAGGCTCTAAGGTTGAAGGCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR-3UTR GCA 90 bp | GAAACAGTACAGAGGTTTAAAGTCAGAGCAGGTCAGAAGGAAGCCTCTGGGCTCCCGCATCTTGGGCTTTaGTTCCTCAGCTCTAGACAC | + |
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Preference number: 2 (lower is better) Translates to: ETVQRFKVRAGQKEASGLPHLGL*FLSSRH Trigger: GTGTCTAGAGCTGAGGAAGCAAAGCCCAAGATGCGG...GAGCCCAGAGGCTTCCTTCTGACCTGCTCTGACTTTAAACCTCTGTACTGTTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR-3UTR GCA 90 bp | AACACCCTCATCACCATACAGCAGCACCTCAAGCTTCAGAGCCGTAGCCACTTACTTCTCTCTTTGGCATaGAAAGCTGGCACACATTCC | + |
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Preference number: 2 (lower is better) Translates to: NTLITIQQHLKLQSRSHLLLSLA*KAGTHS Trigger: GGAATGTGTGCCAGCTTTGCATGCCAAAGAGAGAAG...TAAGTGGCTACGGCTCTGAAGCTTGAGGTGCTGCTGTATGGTGATGAGGGTGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR-3UTR GCA 90 bp | TGTTTCAGAGTTAAGCTGGGTCTTTATAGACAAGGCAGCTTTCTCAGTCAGTCCTCGCTGGGTACTGCATaGAACGGCTTGTGCTGGGCT | + |
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Preference number: 2 (lower is better) Translates to: CFRVKLGLYRQGSFLSQSSLGTA*NGLCWA Trigger: AGCCCAGCACAAGCCGTTGCATGCAGTACCCAGCGA...GGACTGACTGAGAAAGCTGCCTTGTCTATAAAGACCCAGCTTAACTCTGAAACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR-3UTR GCA 90 bp | CGCATCTTGGGCTTTGCTTCCTCAGCTCTAGACACAAGGCATCTGCTACAGTTAATGACACAATGTGGCTaGATTCCACAGCAGGCTGCA | + |
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Preference number: 2 (lower is better) Translates to: RILGFASSALDTRHLLQLMTQCG*IPQQAA Trigger: TGCAGCCTGCTGTGGAATGCAGCCACATTGTGTCAT...TAACTGTAGCAGATGCCTTGTGTCTAGAGCTGAGGAAGCAAAGCCCAAGATGCG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR-3UTR CCA 90 bp | AGGAAACAGTACAGAGGTTTAAAGTCAGAGCAGGTCAGAAGGAAGCCTCTGGGCTGTTGCTTTCGGCTCTaGCTTTTCAGACAGTGCAGC | + |
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Preference number: 2 (lower is better) Translates to: RKQYRGLKSEQVRRKPLGCCFRL*LFRQCS Trigger: GCTGCACTGTCTGAAAAGCCAGAGCCGAAAGCAACA...GCCCAGAGGCTTCCTTCTGACCTGCTCTGACTTTAAACCTCTGTACTGTTTCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR-3UTR TCA 90 bp | AGGCCTTCAACCTTAGAGCCTTTACAGAGGGCAGGCAGGAAGAGAGCACAAGAGTGTGAAAGAGTCATTTaGCTCCTAAAAGGTGGTGAC | + |
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Preference number: 2 (lower is better) Translates to: RPSTLEPLQRAGRKRAQECERVI*LLKGGD Trigger: GTCACCACCTTTTAGGAGTCAAATGACTCTTTCACA...CTCTTGTGCTCTCTTCCTGCCTGCCCTCTGTAAAGGCTCTAAGGTTGAAGGCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR-3UTR TCA 90 bp | CATCTTGGGCTTTGCTTCCTCAGCTCTAGACACAAGGCATCTGCTACAGTTAAACTCTTCCGGAGATCCTaGGTTCAATTCCCAGCAACC | + |
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Preference number: 2 (lower is better) Translates to: HLGLCFLSSRHKASATVKLFRRS*VQFPAT Trigger: GGTTGCTGGGAATTGAACTCAGGATCTCCGGAAGAG...TTTAACTGTAGCAGATGCCTTGTGTCTAGAGCTGAGGAAGCAAAGCCCAAGATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR-3UTR GCA 90 bp | GAAACAGTACAGAGGTTTAAAGTCAGAGCAGGTCAGAAGGAAGCCTCTGGGCTCCTTCTCTCTTTGGCATaGAAAGCTGGCACACATTCC | + |
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Preference number: 2 (lower is better) Translates to: ETVQRFKVRAGQKEASGLLLSLA*KAGTHS Trigger: GGAATGTGTGCCAGCTTTGCATGCCAAAGAGAGAAG...GAGCCCAGAGGCTTCCTTCTGACCTGCTCTGACTTTAAACCTCTGTACTGTTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR-3UTR GCA 90 bp | AGGAAACAGTACAGAGGTTTAAAGTCAGAGCAGGTCAGAAGGAAGCCTCTGGGCTGCCAAGGTCCATTATaGCACAGTGTACAGTCCTGT | + |
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Preference number: 2 (lower is better) Translates to: RKQYRGLKSEQVRRKPLGCQGPL*HSVQSC Trigger: ACAGGACTGTACACTGTGGCATAATGGACCTTGGCA...GCCCAGAGGCTTCCTTCTGACCTGCTCTGACTTTAAACCTCTGTACTGTTTCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR-3UTR GCA 90 bp | AGGAAACAGTACAGAGGTTTAAAGTCAGAGCAGGTCAGAAGGAAGCCTCTGGGCTGGCTTTTCAGACAGTaGAGCTCATCTACTAAGGTG | + |
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Preference number: 2 (lower is better) Translates to: RKQYRGLKSEQVRRKPLGWLFRQ*SSSTKV Trigger: CACCTTAGTAGATGAGCTGCACTGTCTGAAAAGCCA...GCCCAGAGGCTTCCTTCTGACCTGCTCTGACTTTAAACCTCTGTACTGTTTCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR-3UTR CCA 90 bp | AAGCTTCAGAGCCGTAGCCACTTAGGCCACACATCCTCTTCTTCAGCATTTATATGTTGCTTTCGGCTCTaGCTTTTCAGACAGTGCAGC | + |
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Preference number: 2 (lower is better) Translates to: KLQSRSHLGHTSSSSAFICCFRL*LFRQCS Trigger: GCTGCACTGTCTGAAAAGCCAGAGCCGAAAGCAACA...TATAAATGCTGAAGAAGAGGATGTGTGGCCTAAGTGGCTACGGCTCTGAAGCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR-3UTR GCA 90 bp | CATCTTGGGCTTTGCTTCCTCAGCTCTAGACACAAGGCATCTGCTACAGTTAAAATCTCACAGCTCCTCTaGAAACACCCTCATCACCAT | + |
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Preference number: 2 (lower is better) Translates to: HLGLCFLSSRHKASATVKISQLL*KHPHHH Trigger: ATGGTGATGAGGGTGTTTGCAGAGGAGCTGTGAGAT...TTTAACTGTAGCAGATGCCTTGTGTCTAGAGCTGAGGAAGCAAAGCCCAAGATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR-3UTR CCA 90 bp | AGGAAACAGTACAGAGGTTTAAAGTCAGAGCAGGTCAGAAGGAAGCCTCTGGGCTTTGGCATGCAAAGCTaGCACACATTCCTACTTCTA | + |
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Preference number: 2 (lower is better) Translates to: RKQYRGLKSEQVRRKPLGFGMQS*HTFLLL Trigger: TAGAAGTAGGAATGTGTGCCAGCTTTGCATGCCAAA...GCCCAGAGGCTTCCTTCTGACCTGCTCTGACTTTAAACCTCTGTACTGTTTCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR CAA 90 bp | CAGAGGTTTAAAGTCAGAGCAGGTCAGAAGGAAGCCTCTGGGCTCTaGCTACATTGTCTTCTTGTGAAGAGACATGTTAGATGTGTGTGT | + |
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Preference number: 2 (lower is better) Translates to: QRFKVRAGQKEASGL*LHCLLVKRHVRCVC Trigger: ACACACACATCTAACATGTCTCTTCACAAGAAGACAATGTAGCAAGAGCCCAGAGGCTTCCTTCTGACCTGCTCTGACTTTAAACCTCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR-3UTR TCA 90 bp | CAATCTAGTTTGCATACAAGAGATGCCACATGGAAAGTGGCGAGTACTTCCCACTTTCCTGATTCTCAGTaGCTTCTACCTAGTCACCTC | + |
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Preference number: 2 (lower is better) Translates to: QSSLHTRDATWKVASTSHFPDSQ*LLPSHL Trigger: GAGGTGACTAGGTAGAAGTCACTGAGAATCAGGAAA...GTGGGAAGTACTCGCCACTTTCCATGTGGCATCTCTTGTATGCAAACTAGATTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR-3UTR GCA 90 bp | CAATCTAGTTTGCATACAAGAGATGCCACATGGAAAGTGGCGAGTACTTCCCACTGGCTTTTCAGACAGTaGAGCTCATCTACTAAGGTG | + |
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Preference number: 2 (lower is better) Translates to: QSSLHTRDATWKVASTSHWLFRQ*SSSTKV Trigger: CACCTTAGTAGATGAGCTGCACTGTCTGAAAAGCCA...GTGGGAAGTACTCGCCACTTTCCATGTGGCATCTCTTGTATGCAAACTAGATTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR-3UTR GCA 90 bp | CATCTTGGGCTTTGCTTCCTCAGCTCTAGACACAAGGCATCTGCTACAGTTAAACACACTTTGTTTTGCTaGCAAGGTCCATTATGCCAC | + |
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Preference number: 2 (lower is better) Translates to: HLGLCFLSSRHKASATVKHTLFC*QGPLCH Trigger: GTGGCATAATGGACCTTGGCAGCAAAACAAAGTGTG...TTTAACTGTAGCAGATGCCTTGTGTCTAGAGCTGAGGAAGCAAAGCCCAAGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR-3UTR TCA 90 bp | AGGAAACAGTACAGAGGTTTAAAGTCAGAGCAGGTCAGAAGGAAGCCTCTGGGCTACATTGTCTTCTTGTaGAGAGACATGTTAGATGTG | + |
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Preference number: 2 (lower is better) Translates to: RKQYRGLKSEQVRRKPLGYIVFL*RDMLDV Trigger: CACATCTAACATGTCTCTTCACAAGAAGACAATGTA...GCCCAGAGGCTTCCTTCTGACCTGCTCTGACTTTAAACCTCTGTACTGTTTCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR-3UTR GCA 90 bp | CGCATCTTGGGCTTTGCTTCCTCAGCTCTAGACACAAGGCATCTGCTACAGTTAGACCAAAATATATACTaGTCTGGTCATGGTTCTAAG | + |
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Preference number: 2 (lower is better) Translates to: RILGFASSALDTRHLLQLDQNIY*SGHGSK Trigger: CTTAGAACCATGACCAGAGCAGTATATATTTTGGTC...TAACTGTAGCAGATGCCTTGTGTCTAGAGCTGAGGAAGCAAAGCCCAAGATGCG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR-3UTR CCA 90 bp | AACACCCTCATCACCATACAGCAGCACCTCAAGCTTCAGAGCCGTAGCCACTTAAACACCTTCATTTGCTaGAGTTCAGAAATCAGAAAT | + |
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Preference number: 2 (lower is better) Translates to: NTLITIQQHLKLQSRSHLNTFIC*SSEIRN Trigger: ATTTCTGATTTCTGAACTCCAGCAAATGAAGGTGTT...TAAGTGGCTACGGCTCTGAAGCTTGAGGTGCTGCTGTATGGTGATGAGGGTGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR-3UTR CCA 90 bp | AAGCTTCAGAGCCGTAGCCACTTAGGCCACACATCCTCTTCTTCAGCATTTATAGCTCATCTACTAAGGTaGTGGTTCTCAACTTTCCTA | + |
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Preference number: 2 (lower is better) Translates to: KLQSRSHLGHTSSSSAFIAHLLR*WFSTFL Trigger: TAGGAAAGTTGAGAACCACCACCTTAGTAGATGAGC...TATAAATGCTGAAGAAGAGGATGTGTGGCCTAAGTGGCTACGGCTCTGAAGCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR-3UTR CCA 90 bp | CTTCTCTCTTTGGCATGCAAAGCTGGCACACATTCCTACTTCTACCAAACAGCCAACACCTTCATTTGCTaGAGTTCAGAAATCAGAAAT | + |
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Preference number: 2 (lower is better) Translates to: LLSLACKAGTHSYFYQTANTFIC*SSEIRN Trigger: ATTTCTGATTTCTGAACTCCAGCAAATGAAGGTGTT...GGCTGTTTGGTAGAAGTAGGAATGTGTGCCAGCTTTGCATGCCAAAGAGAGAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR-3UTR CAA 90 bp | CAGAGGGCAGGCAGGAAGAGAGCACAAGAGGACACCGAGCTGAGCTCCCAATGTGGGGAAGCACACACTTaGTTTTGCTGCCAAGGTCCA | + |
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Preference number: 3 (lower is better) Translates to: QRAGRKRAQEDTELSSQCGEAHT*FCCQGP Trigger: TGGACCTTGGCAGCAAAACAAAGTGTGTGCTTCCCC...ACATTGGGAGCTCAGCTCGGTGTCCTCTTGTGCTCTCTTCCTGCCTGCCCTCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR-3UTR CAA 90 bp | CCGGCTTTTACAGAGGCCCAGGGAACCAGGTTTCCTTTGCATGCCCTCCCAACCACTCGCGGGCTGCTCTaGCGTTGTTTTTCTAACAGT | + |
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Preference number: 3 (lower is better) Translates to: PAFTEAQGTRFPLHALPTTRGLL*RCFSNS Trigger: ACTGTTAGAAAAACAACGCAAGAGCAGCCCGCGAGT...GGTTGGGAGGGCATGCAAAGGAAACCTGGTTCCCTGGGCCTCTGTAAAAGCCGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR GCA 72 bp | GGCTGGAGAGATGGCTCAGTGGTTAAGAGCACCGACTaGTCTTCCGGAGATCCTGAGTTCAATTCCCAGCAA | + |
|
Preference number: 3 (lower is better) Translates to: GWRDGSVVKSTD*SSGDPEFNSQQ Trigger: TTGCTGGGAATTGAACTCAGGATCTCCGGAAGAGCAGTCGGTGCTCTTAACCACTGAGCCATCTCTCCAGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR CCA 72 bp | TTCCTTTGCATGCCCTCCCAACCCTCTTTTCCTGTTTaGTCAGAGCACAGCTCCCACTCTAACAGGGGACTC | + |
|
Preference number: 3 (lower is better) Translates to: FLCMPSQPSFPV*SEHSSHSNRGL Trigger: GAGTCCCCTGTTAGAGTGGGAGCTGTGCTCTGACCAAACAGGAAAAGAGGGTTGGGAGGGCATGCAAAGGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR-3UTR CAA 90 bp | CCGGCTTTTACAGAGGCCCAGGGAACCAGGTTTCCTTTGCATGCCCTCCCAACCAGCACACACTTTGTTTaGCTGCCAAGGTCCATTATG | + |
|
Preference number: 3 (lower is better) Translates to: PAFTEAQGTRFPLHALPTSTHFV*LPRSIM Trigger: CATAATGGACCTTGGCAGCAAAACAAAGTGTGTGCT...GGTTGGGAGGGCATGCAAAGGAAACCTGGTTCCCTGGGCCTCTGTAAAAGCCGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR CCA 72 bp | GCTACAGTTAAAAGCCTAAGGAAACATGACACAATGTaGCTGCATTCCACAGCAGGCTGCACTGGCCAGGCC | + |
|
Preference number: 3 (lower is better) Translates to: ATVKSLRKHDTM*LHSTAGCTGQA Trigger: GGCCTGGCCAGTGCAGCCTGCTGTGGAATGCAGCCACATTGTGTCATGTTTCCTTAGGCTTTTAACTGTAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR-3UTR CAA 90 bp | CAGAGGGCAGGCAGGAAGAGAGCACAAGAGGACACCGAGCTGAGCTCCCAATGTGGAATTACATTGTATTaGGGCACATGGCTCATAAGG | + |
|
Preference number: 3 (lower is better) Translates to: QRAGRKRAQEDTELSSQCGITLY*GTWLIR Trigger: CCTTATGAGCCATGTGCCCAAATACAATGTAATTCC...ACATTGGGAGCTCAGCTCGGTGTCCTCTTGTGCTCTCTTCCTGCCTGCCCTCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR-3UTR CAA 90 bp | CGCATCTTGGGCTTTGCTTCCTCAGCTCTAGACACAAGGCATCTGCTACAGTTACTGTCCCTTCTCTCTTaGGCATGCAAAGCTGGCACA | + |
|
Preference number: 3 (lower is better) Translates to: RILGFASSALDTRHLLQLLSLLS*ACKAGT Trigger: TGTGCCAGCTTTGCATGCCAAAGAGAGAAGGGACAG...TAACTGTAGCAGATGCCTTGTGTCTAGAGCTGAGGAAGCAAAGCCCAAGATGCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR-3UTR CAA 90 bp | AGGAAACAGTACAGAGGTTTAAAGTCAGAGCAGGTCAGAAGGAAGCCTCTGGGCACCCTCTTTTCCTGTTaGGTCAGAGCACAGCTCCCA | + |
|
Preference number: 3 (lower is better) Translates to: RKQYRGLKSEQVRRKPLGTLFSC*VRAQLP Trigger: TGGGAGCTGTGCTCTGACCAAACAGGAAAAGAGGGT...GCCCAGAGGCTTCCTTCTGACCTGCTCTGACTTTAAACCTCTGTACTGTTTCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR TCA 72 bp | TCAATGGTCTTAGGTGACCCCTGTGAAAGAGTCATTTaGCTCCTAAAAGGTGGTGACCCACAGGCTGGGAAC | + |
|
Preference number: 3 (lower is better) Translates to: SMVLGDPCERVI*LLKGGDPQAGN Trigger: GTTCCCAGCCTGTGGGTCACCACCTTTTAGGAGTCAAATGACTCTTTCACAGGGGTCACCTAAGACCATTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR GCA 72 bp | AGTGGACTCTGCCCTCTAGGAGCGCACAATCTAGTTTaGATACAAGAGATGCCACATGGAAAGTGGCGAGTA | + |
|
Preference number: 3 (lower is better) Translates to: SGLCPLGAHNLV*IQEMPHGKWRV Trigger: TACTCGCCACTTTCCATGTGGCATCTCTTGTATGCAAACTAGATTGTGCGCTCCTAGAGGGCAGAGTCCACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR-3UTR CAA 90 bp | CATCTTGGGCTTTGCTTCCTCAGCTCTAGACACAAGGCATCTGCTACAGTTAAAACCCTCTTTTCCTGTTaGGTCAGAGCACAGCTCCCA | + |
|
Preference number: 3 (lower is better) Translates to: HLGLCFLSSRHKASATVKTLFSC*VRAQLP Trigger: TGGGAGCTGTGCTCTGACCAAACAGGAAAAGAGGGT...TTTAACTGTAGCAGATGCCTTGTGTCTAGAGCTGAGGAAGCAAAGCCCAAGATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR-3UTR CAA 90 bp | CATCTTGGGCTTTGCTTCCTCAGCTCTAGACACAAGGCATCTGCTACAGTTAAAACTCGCGGGCTGCTCTaGCGTTGTTTTTCTAACAGT | + |
|
Preference number: 3 (lower is better) Translates to: HLGLCFLSSRHKASATVKTRGLL*RCFSNS Trigger: ACTGTTAGAAAAACAACGCAAGAGCAGCCCGCGAGT...TTTAACTGTAGCAGATGCCTTGTGTCTAGAGCTGAGGAAGCAAAGCCCAAGATG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR-3UTR CAA 90 bp | CGCATCTTGGGCTTTGCTTCCTCAGCTCTAGACACAAGGCATCTGCTACAGTTAGTCTGTTTGAAAAGCTaGAATAACGGTGAGGGCACT | + |
|
Preference number: 3 (lower is better) Translates to: RILGFASSALDTRHLLQLVCLKS*NNGEGT Trigger: AGTGCCCTCACCGTTATTCAAGCTTTTCAAACAGAC...TAACTGTAGCAGATGCCTTGTGTCTAGAGCTGAGGAAGCAAAGCCCAAGATGCG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR-3UTR CAA 90 bp | AGGAAACAGTACAGAGGTTTAAAGTCAGAGCAGGTCAGAAGGAAGCCTCTGGGCGGAATTACATTGTATTaGGGCACATGGCTCATAAGG | + |
|
Preference number: 3 (lower is better) Translates to: RKQYRGLKSEQVRRKPLGGITLY*GTWLIR Trigger: CCTTATGAGCCATGTGCCCAAATACAATGTAATTCC...GCCCAGAGGCTTCCTTCTGACCTGCTCTGACTTTAAACCTCTGTACTGTTTCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR-3UTR CAA 90 bp | CTGCCAAGGTCCATTATGCCACAGTGTACAGTCCTGTTTCCTTATGTGTCAGTGGAAGCAGGAATTACATaGTATTTGGGCACATGGCTC | + |
|
Preference number: 3 (lower is better) Translates to: LPRSIMPQCTVLFPYVSVEAGIT*YLGTWL Trigger: GAGCCATGTGCCCAAATACAATGTAATTCCTGCTTC...CACTGACACATAAGGAAACAGGACTGTACACTGTGGCATAATGGACCTTGGCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR-3UTR CAA 90 bp | CGCATCTTGGGCTTTGCTTCCTCAGCTCTAGACACAAGGCATCTGCTACAGTTACAACAGCAGGTCTGTTaGAAAAGCTTGAATAACGGT | + |
|
Preference number: 3 (lower is better) Translates to: RILGFASSALDTRHLLQLQQQVC*KSLNNG Trigger: ACCGTTATTCAAGCTTTTCAAACAGACCTGCTGTTG...TAACTGTAGCAGATGCCTTGTGTCTAGAGCTGAGGAAGCAAAGCCCAAGATGCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR CCA 72 bp | TTTAGGTCTGTCCCTTCTCTCTTTGGCATGCAAAGCTaGCACACATTCCTACTTCTACCAAACAGCCACAGA | + |
|
Preference number: 3 (lower is better) Translates to: FRSVPSLFGMQS*HTFLLLPNSHR Trigger: TCTGTGGCTGTTTGGTAGAAGTAGGAATGTGTGCCAGCTTTGCATGCCAAAGAGAGAAGGGACAGACCTAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR CCA 72 bp | AGCGCACAATCTAGTTTGCATACAAGAGATGCCACATaGAAAGTGGCGAGTACTTCCCACAGGAAACAGTAC | + |
|
Preference number: 3 (lower is better) Translates to: SAQSSLHTRDAT*KVASTSHRKQY Trigger: GTACTGTTTCCTGTGGGAAGTACTCGCCACTTTCCATGTGGCATCTCTTGTATGCAAACTAGATTGTGCGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR-3UTR CAA 90 bp | GAAACAGTACAGAGGTTTAAAGTCAGAGCAGGTCAGAAGGAAGCCTCTGGGCTCACAAAACACCTTCATTaGCTGGAGTTCAGAAATCAG | + |
|
Preference number: 3 (lower is better) Translates to: ETVQRFKVRAGQKEASGLTKHLH*LEFRNQ Trigger: CTGATTTCTGAACTCCAGCAAATGAAGGTGTTTTGT...GAGCCCAGAGGCTTCCTTCTGACCTGCTCTGACTTTAAACCTCTGTACTGTTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR GCA 72 bp | ATGGCTCTTTTAGGTCTGTCCCTTCTCTCTTTGGCATaGAAAGCTGGCACACATTCCTACTTCTACCAAACA | + |
|
Preference number: 3 (lower is better) Translates to: MALLGLSLLSLA*KAGTHSYFYQT Trigger: TGTTTGGTAGAAGTAGGAATGTGTGCCAGCTTTGCATGCCAAAGAGAGAAGGGACAGACCTAAAAGAGCCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR GCA 72 bp | GAAGCACACACTTTGTTTTGCTGCCAAGGTCCATTATaGCACAGTGTACAGTCCTGTTTCCTTATGTGTCAG | + |
|
Preference number: 3 (lower is better) Translates to: EAHTLFCCQGPL*HSVQSCFLMCQ Trigger: CTGACACATAAGGAAACAGGACTGTACACTGTGGCATAATGGACCTTGGCAGCAAAACAAAGTGTGTGCTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR CCA 72 bp | TTCATATATCCAGATTCGCTGTGTTGCTTTCGGCTCTaGCTTTTCAGACAGTGCAGCTCATCTACTAAGGTG | + |
|
Preference number: 3 (lower is better) Translates to: FIYPDSLCCFRL*LFRQCSSSTKV Trigger: CACCTTAGTAGATGAGCTGCACTGTCTGAAAAGCCAGAGCCGAAAGCAACACAGCGAATCTGGATATATGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR-3UTR CAA 90 bp | CTTCTCTCTTTGGCATGCAAAGCTGGCACACATTCCTACTTCTACCAAACAGCCACAAAACACCTTCATTaGCTGGAGTTCAGAAATCAG | + |
|
Preference number: 3 (lower is better) Translates to: LLSLACKAGTHSYFYQTATKHLH*LEFRNQ Trigger: CTGATTTCTGAACTCCAGCAAATGAAGGTGTTTTGT...GGCTGTTTGGTAGAAGTAGGAATGTGTGCCAGCTTTGCATGCCAAAGAGAGAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR TCA 72 bp | CTAGACAAAAGCCCTCCATTGTGTCTCCCAGTTCTATaGAGCCAACAGCAGGTCTGTTTGAAAAGCTTGAAT | + |
|
Preference number: 3 (lower is better) Translates to: LDKSPPLCLPVL*SQQQVCLKSLN Trigger: ATTCAAGCTTTTCAAACAGACCTGCTGTTGGCTTCATAGAACTGGGAGACACAATGGAGGGCTTTTGTCTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR GCA 72 bp | AACATGACTTTCTTCATATATCCAGATTCGCTGTGTTaGTTTCGGCTCTGGCTTTTCAGACAGTGCAGCTCA | + |
|
Preference number: 3 (lower is better) Translates to: NMTFFIYPDSLC*FRLWLFRQCSS Trigger: TGAGCTGCACTGTCTGAAAAGCCAGAGCCGAAAGCAACACAGCGAATCTGGATATATGAAGAAAGTCATGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR CCA 72 bp | AGGTGTCCATTCATAACTAGTGTTTCAGAGTTAAGCTaGGTCTTTATAGACAAGGCAGCTTTCTCAGTCAGT | + |
|
Preference number: 3 (lower is better) Translates to: RCPFITSVSELS*VFIDKAAFSVS Trigger: ACTGACTGAGAAAGCTGCCTTGTCTATAAAGACCCAGCTTAACTCTGAAACACTAGTTATGAATGGACACCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR TCA 72 bp | TTTCTAACAGTGACTGACTGGTTTCCTGATTCTCAGTaGCTTCTACCTAGTCACCTCTCCAAATCCATTAAA | + |
|
Preference number: 3 (lower is better) Translates to: FLTVTDWFPDSQ*LLPSHLSKSIK Trigger: TTTAATGGATTTGGAGAGGTGACTAGGTAGAAGTCACTGAGAATCAGGAAACCAGTCAGTCACTGTTAGAAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR GCA 72 bp | ACCAAACAGCCACAGAGGAGACAAAACACCTTCATTTaGTGGAGTTCAGAAATCAGAAATCTACAAAAACTC | + |
|
Preference number: 3 (lower is better) Translates to: TKQPQRRQNTFI*WSSEIRNLQKL Trigger: GAGTTTTTGTAGATTTCTGATTTCTGAACTCCAGCAAATGAAGGTGTTTTGTCTCCTCTGTGGCTGTTTGGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| 3UTR CCA 72 bp | AAACAGCCACAGAGGAGACAAAACACCTTCATTTGCTaGAGTTCAGAAATCAGAAATCTACAAAAACTCAAT | + |
|
Preference number: 3 (lower is better) Translates to: KQPQRRQNTFIC*SSEIRNLQKLN Trigger: ATTGAGTTTTTGTAGATTTCTGATTTCTGAACTCCAGCAAATGAAGGTGTTTTGTCTCCTCTGTGGCTGTTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| CDS-3UTR TCA 90 bp | CCGGCTTTTACAGAGGCCCAGGGAACCAGGTTTCCTTTGCATGCCCTCCCAACCGGTAGAAACCAAGCTTaGTCATGGCTTCTTTCATGT | + |
|
Preference number: 4 (lower is better) Translates to: PAFTEAQGTRFPLHALPTGRNQA*SWLLSC Trigger: ACATGAAAGAAGCCATGATCAAGCTTGGTTTCTACC...GGTTGGGAGGGCATGCAAAGGAAACCTGGTTCCCTGGGCCTCTGTAAAAGCCGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134115.8 |
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| 3UTR CAA 72 bp | GAGTGGACTCTGCCCTCTAGGAGCGCACAATCTAGTTaGCATACAAGAGATGCCACATGGAAAGTGGCGAGT | + |
|
Preference number: 4 (lower is better) Translates to: EWTLPSRSAQSS*HTRDATWKVAS Trigger: ACTCGCCACTTTCCATGTGGCATCTCTTGTATGCAAACTAGATTGTGCGCTCCTAGAGGGCAGAGTCCACTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| CDS-3UTR TCA 90 bp | AGGCCTTCAACCTTAGAGCCTTTACAGAGGGCAGGCAGGAAGAGAGCACAAGAGTACTATAGAGATACATaGAGAAACAGAGCAGGTAGA | + |
|
Preference number: 4 (lower is better) Translates to: RPSTLEPLQRAGRKRAQEYYRDT*RNRAGR Trigger: TCTACCTGCTCTGTTTCTTCATGTATCTCTATAGTA...CTCTTGTGCTCTCTTCCTGCCTGCCCTCTGTAAAGGCTCTAAGGTTGAAGGCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134115.8 |
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| CDS-3UTR CCA 90 bp | GAAACAGTACAGAGGTTTAAAGTCAGAGCAGGTCAGAAGGAAGCCTCTGGGCTCTCCCATGTTGCCACTTaGCACCATAATGAACCTATA | + |
|
Preference number: 4 (lower is better) Translates to: ETVQRFKVRAGQKEASGLSHVAT*HHNEPI Trigger: TATAGGTTCATTATGGTGCCAAGTGGCAACATGGGA...GAGCCCAGAGGCTTCCTTCTGACCTGCTCTGACTTTAAACCTCTGTACTGTTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134115.8 |
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| 3UTR CAA 72 bp | TACCAAACAGCCACAGAGGAGACAAAACACCTTCATTaGCTGGAGTTCAGAAATCAGAAATCTACAAAAACT | + |
|
Preference number: 4 (lower is better) Translates to: YQTATEETKHLH*LEFRNQKSTKT Trigger: AGTTTTTGTAGATTTCTGATTTCTGAACTCCAGCAAATGAAGGTGTTTTGTCTCCTCTGTGGCTGTTTGGTA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| CDS-3UTR CAA 90 bp | AGGCCTTCAACCTTAGAGCCTTTACAGAGGGCAGGCAGGAAGAGAGCACAAGAGGTGGCGACAGGTAAGTaGAGAAGGAAGATGAACCAG | + |
|
Preference number: 5 (lower is better) Translates to: RPSTLEPLQRAGRKRAQEVATGK*RRKMNQ Trigger: CTGGTTCATCTTCCTTCTCAACTTACCTGTCGCCAC...CTCTTGTGCTCTCTTCCTGCCTGCCCTCTGTAAAGGCTCTAAGGTTGAAGGCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| CDS-3UTR CAA 90 bp | AGGCCTTCAACCTTAGAGCCTTTACAGAGGGCAGGCAGGAAGAGAGCACAAGAGTCCGGGATCACCCACTaGTTTAATTTTGAGCAACAT | + |
|
Preference number: 5 (lower is better) Translates to: RPSTLEPLQRAGRKRAQESGITH*FNFEQH Trigger: ATGTTGCTCAAAATTAAACAAGTGGGTGATCCCGGA...CTCTTGTGCTCTCTTCCTGCCTGCCCTCTGTAAAGGCTCTAAGGTTGAAGGCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| CDS-3UTR CAA 90 bp | TGTTTCAGAGTTAAGCTGGGTCTTTATAGACAAGGCAGCTTTCTCAGTCAGTCCGTGGCGACAGGTAAGTaGAGAAGGAAGATGAACCAG | + |
|
Preference number: 5 (lower is better) Translates to: CFRVKLGLYRQGSFLSQSVATGK*RRKMNQ Trigger: CTGGTTCATCTTCCTTCTCAACTTACCTGTCGCCAC...GGACTGACTGAGAAAGCTGCCTTGTCTATAAAGACCCAGCTTAACTCTGAAACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| CDS-3UTR CAA 90 bp | CATCTTGGGCTTTGCTTCCTCAGCTCTAGACACAAGGCATCTGCTACAGTTAAATCCGGGATCACCCACTaGTTTAATTTTGAGCAACAT | + |
|
Preference number: 5 (lower is better) Translates to: HLGLCFLSSRHKASATVKSGITH*FNFEQH Trigger: ATGTTGCTCAAAATTAAACAAGTGGGTGATCCCGGA...TTTAACTGTAGCAGATGCCTTGTGTCTAGAGCTGAGGAAGCAAAGCCCAAGATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111059.2 ENSMUST00000134115.8 |
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| CDS-3UTR CAA 90 bp | CCACAGAGGAGACAAAACACCTTCATTTGCTGGAGTTCAGAAATCAGAAATCTATTTAACTGTCCCCGGTaGTGTATTTCTGTTGGATCA | + |
|
Preference number: 5 (lower is better) Translates to: PQRRQNTFICWSSEIRNLFNCPR*CISVGS Trigger: TGATCCAACAGAAATACACAACCGGGGACAGTTAAA...TAGATTTCTGATTTCTGAACTCCAGCAAATGAAGGTGTTTTGTCTCCTCTGTGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000134115.8 |
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