Pregenerated sensors for CNIH3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026514Ensembl transcript IDs: ENSMUST00000027795.14, ENSMUST00000161880.8, ENSMUST00000162685.2, ENSMUST00000209607.2
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGTCCCTGTGGGTCTCAGCCATCCCTGAAGATCTGGCCTTGGCCCTaGGCCATTCTGTCCCTTGTTCGACACCTGCCAGCATCTGGCCTC | + |
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Preference number: 1 (lower is better) Translates to: CPCGSQPSLKIWPWP*AILSLVRHLPASGL Trigger: GAGGCCAGATGCTGGCAGGTGTCGAACAAGGGACAGAATGGCTCAGGGCCAAGGCCAGATCTTCAGGGATGGCTGAGACCCACAGGGACA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 |
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| 3UTR TCA 90 bp | GAGTCTTGGGCAGCCCATGGTGTCCCTGTGGGTCTCAGCCATCCCTaGAGATCTGGCCTTGGCCCTGAGCCATTCTGTCCCTTGTTCGAC | + |
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Preference number: 1 (lower is better) Translates to: ESWAAHGVPVGLSHP*RSGLGPEPFCPLFD Trigger: GTCGAACAAGGGACAGAATGGCTCAGGGCCAAGGCCAGATCTTCAGGGATGGCTGAGACCCACAGGGACACCATGGGCTGCCCAAGACTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 |
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| 3UTR TCA 90 bp | GGAAGCCACAGCCCAGGCTCCTGGACACAGAGCGTAAAAGTGACGTaGGAGGTGGCTCAGGGCAGTCCCCACAGCTTTCTGCCTTGCACT | + |
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Preference number: 1 (lower is better) Translates to: GSHSPGSWTQSVKVT*EVAQGSPHSFLPCT Trigger: AGTGCAAGGCAGAAAGCTGTGGGGACTGCCCTGAGCCACCTCTCACGTCACTTTTACGCTCTGTGTCCAGGAGCCTGGGCTGTGGCTTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 |
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| 3UTR CCA 90 bp | CTTTCATTCGGTCTCTGCCATCTGGGTCTCTCCGTCATCCCCATCTaGTGCTCCTCTAGCCACAGCCGCAGTGGTTCCCAGCTTCGGCCT | + |
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Preference number: 1 (lower is better) Translates to: LSFGLCHLGLSVIPI*CSSSHSRSGSQLRP Trigger: AGGCCGAAGCTGGGAACCACTGCGGCTGTGGCTAGAGGAGCACCAGATGGGGATGACGGAGAGACCCAGATGGCAGAGACCGAATGAAAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 |
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| 3UTR TCA 90 bp | AGGCAGAAACAGACACACGTGGGTAACATGGCTCTGACTGCTGTATaGCTCCCGTTCCTTTCATTCGGTCTCTGCCATCTGGGTCTCTCC | + |
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Preference number: 1 (lower is better) Translates to: RQKQTHVGNMALTAV*LPFLSFGLCHLGLS Trigger: GGAGAGACCCAGATGGCAGAGACCGAATGAAAGGAACGGGAGTCATACAGCAGTCAGAGCCATGTTACCCACGTGTGTCTGTTTCTGCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 |
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| 3UTR TCA 90 bp | GTGAAATGCGAAGGCAGAAACAGACACACGTGGGTAACATGGCTCTaGCTGCTGTATGACTCCCGTTCCTTTCATTCGGTCTCTGCCATC | + |
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Preference number: 1 (lower is better) Translates to: VKCEGRNRHTWVTWL*LLYDSRSFHSVSAI Trigger: GATGGCAGAGACCGAATGAAAGGAACGGGAGTCATACAGCAGTCAGAGCCATGTTACCCACGTGTGTCTGTTTCTGCCTTCGCATTTCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 |
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| 3UTR TCA 90 bp | AGTTTGCCAACCATATGGATACCCCGGGGGTGGGTTGAAATGAGATaGGGTGAGCCACTCAAGTTGTTGCTGCATCTTAAACATAGCACA | + |
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Preference number: 1 (lower is better) Translates to: SLPTIWIPRGWVEMR*GEPLKLLLHLKHST Trigger: TGTGCTATGTTTAAGATGCAGCAACAACTTGAGTGGCTCACCTCATCTCATTTCAACCCACCCCCGGGGTATCCATATGGTTGGCAAACT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027795.14 |
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| 3UTR CCA 90 bp | CGAGCTCTCCATGTGAAACTCGCACAGTTCTGCTGCTCAGTGAAGTaGATGAAGGAAGTAATAATGGCATCTCCAGAGGTTGAGTGTTTC | + |
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Preference number: 1 (lower is better) Translates to: RALHVKLAQFCCSVK*MKEVIMASPEVECF Trigger: GAAACACTCAACCTCTGGAGATGCCATTATTACTTCCTTCATCCACTTCACTGAGCAGCAGAACTGTGCGAGTTTCACATGGAGAGCTCG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 |
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| 3UTR TCA 90 bp | CTACTAGTTTGCCAACCATATGGATACCCCGGGGGTGGGTTGAAATaGGATGAGGTGAGCCACTCAAGTTGTTGCTGCATCTTAAACATA | + |
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Preference number: 1 (lower is better) Translates to: LLVCQPYGYPGGGLK*DEVSHSSCCCILNI Trigger: TATGTTTAAGATGCAGCAACAACTTGAGTGGCTCACCTCATCTCATTTCAACCCACCCCCGGGGTATCCATATGGTTGGCAAACTAGTAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027795.14 |
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| 3UTR CCA 90 bp | TCATGCCAGCCAGCTGATTGGCATGTAATGACTCTGATGAATTTTTaGCACAGTGGCAGAATACATCTTGGGAGGGTGAAGAACTCACAC | + |
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Preference number: 1 (lower is better) Translates to: SCQPADWHVMTLMNF*HSGRIHLGRVKNSH Trigger: GTGTGAGTTCTTCACCCTCCCAAGATGTATTCTGCCACTGTGCCAAAAATTCATCAGAGTCATTACATGCCAATCAGCTGGCTGGCATGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027795.14 |
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| 3UTR CAA 90 bp | CCCATGGTGTCCCTGTGGGTCTCAGCCATCCCTGAAGATCTGGCCTaGGCCCTGAGCCATTCTGTCCCTTGTTCGACACCTGCCAGCATC | + |
|
Preference number: 2 (lower is better) Translates to: PMVSLWVSAIPEDLA*ALSHSVPCSTPASI Trigger: GATGCTGGCAGGTGTCGAACAAGGGACAGAATGGCTCAGGGCCAAGGCCAGATCTTCAGGGATGGCTGAGACCCACAGGGACACCATGGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 |
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| 3UTR-3UTR CCA 90 bp | GCCCATGCTCAGAGGGGCCCTGCAACCCATGTGGGATGTGAAATGCGAAGGCAGTCCGTCATCCCCATCTaGTGCTCCTCTAGCCACAGC | + |
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Preference number: 2 (lower is better) Translates to: AHAQRGPATHVGCEMRRQSVIPI*CSSSHS Trigger: GCTGTGGCTAGAGGAGCACCAGATGGGGATGACGGA...CTGCCTTCGCATTTCACATCCCACATGGGTTGCAGGGCCCCTCTGAGCATGGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 |
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| 3UTR-3UTR CCA 90 bp | GGGCAGCCCATGGTGTCCCTGTGGGTCTCAGCCATCCCTGAAGATCTGGCCTTGGCCCTGCAACCCATGTaGGATGTGAAATGCGAAGGC | + |
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Preference number: 2 (lower is better) Translates to: GQPMVSLWVSAIPEDLALALQPM*DVKCEG Trigger: GCCTTCGCATTTCACATCCCACATGGGTTGCAGGGC...CAAGGCCAGATCTTCAGGGATGGCTGAGACCCACAGGGACACCATGGGCTGCCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 |
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| 3UTR-3UTR TCA 90 bp | AGCCCATGGTGTCCCTGTGGGTCTCAGCCATCCCTGAAGATCTGGCCTTGGCCCGACGAGCTCTCCATGTaGAACTCGCACAGTTCTGCT | + |
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Preference number: 2 (lower is better) Translates to: SPWCPCGSQPSLKIWPWPDELSM*NSHSSA Trigger: AGCAGAACTGTGCGAGTTTCACATGGAGAGCTCGTC...GGGCCAAGGCCAGATCTTCAGGGATGGCTGAGACCCACAGGGACACCATGGGCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 |
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| 3UTR-3UTR CCA 90 bp | TGGCTCAGGGCAGTCCCCACAGCTTTCTGCCTTGCACTGAGCAAAGCATGTGACGTCTTGGGCAGCCCATaGTGTCCCTGTGGGTCTCAG | + |
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Preference number: 2 (lower is better) Translates to: WLRAVPTAFCLALSKACDVLGSP*CPCGSQ Trigger: CTGAGACCCACAGGGACACCATGGGCTGCCCAAGAC...GTCACATGCTTTGCTCAGTGCAAGGCAGAAAGCTGTGGGGACTGCCCTGAGCCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 |
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| 3UTR-3UTR CCA 90 bp | CTCCTGGACACAGAGCGTAAAAGTGACGTGAGAGGTGGCTCAGGGCAGTCCCCAGCCCTGCAACCCATGTaGGATGTGAAATGCGAAGGC | + |
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Preference number: 2 (lower is better) Translates to: LLDTERKSDVRGGSGQSPALQPM*DVKCEG Trigger: GCCTTCGCATTTCACATCCCACATGGGTTGCAGGGC...TGGGGACTGCCCTGAGCCACCTCTCACGTCACTTTTACGCTCTGTGTCCAGGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 |
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| 3UTR-3UTR CCA 90 bp | TGGCTCAGGGCAGTCCCCACAGCTTTCTGCCTTGCACTGAGCAAAGCATGTGACCCCATGGTGTCCCTGTaGGTCTCAGCCATCCCTGAA | + |
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Preference number: 2 (lower is better) Translates to: WLRAVPTAFCLALSKACDPMVSL*VSAIPE Trigger: TTCAGGGATGGCTGAGACCCACAGGGACACCATGGG...GTCACATGCTTTGCTCAGTGCAAGGCAGAAAGCTGTGGGGACTGCCCTGAGCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 |
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| 3UTR-3UTR TCA 90 bp | CGTGAGAGGTGGCTCAGGGCAGTCCCCACAGCTTTCTGCCTTGCACTGAGCAAAGACGAGCTCTCCATGTaGAACTCGCACAGTTCTGCT | + |
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Preference number: 2 (lower is better) Translates to: RERWLRAVPTAFCLALSKDELSM*NSHSSA Trigger: AGCAGAACTGTGCGAGTTTCACATGGAGAGCTCGTC...TTTGCTCAGTGCAAGGCAGAAAGCTGTGGGGACTGCCCTGAGCCACCTCTCACG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 |
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| 3UTR-3UTR CCA 90 bp | GCAGTCCCCACAGCTTTCTGCCTTGCACTGAGCAAAGCATGTGACCACAGCTCTTCGGTCTCTGCCATCTaGGTCTCTCCGTCATCCCCA | + |
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Preference number: 2 (lower is better) Translates to: AVPTAFCLALSKACDHSSSVSAI*VSPSSP Trigger: TGGGGATGACGGAGAGACCCAGATGGCAGAGACCGA...AGAGCTGTGGTCACATGCTTTGCTCAGTGCAAGGCAGAAAGCTGTGGGGACTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 |
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| 3UTR-3UTR CCA 90 bp | AGACGAGCTCTCCATGTGAAACTCGCACAGTTCTGCTGCTCAGTGAAGTGGATGTCGGTCTCTGCCATCTaGGTCTCTCCGTCATCCCCA | + |
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Preference number: 2 (lower is better) Translates to: RRALHVKLAQFCCSVKWMSVSAI*VSPSSP Trigger: TGGGGATGACGGAGAGACCCAGATGGCAGAGACCGA...CATCCACTTCACTGAGCAGCAGAACTGTGCGAGTTTCACATGGAGAGCTCGTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 |
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| 3UTR-3UTR GCA 90 bp | GTTCGACACCTGCCAGCATCTGGCCTCATTTCTACCATCCAGACGAGCTCTCCAAAACTCGCACAGTTCTaGTGCTCAGTGAAGTGGATG | + |
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Preference number: 2 (lower is better) Translates to: VRHLPASGLISTIQTSSPKLAQF*CSVKWM Trigger: CATCCACTTCACTGAGCAGCAGAACTGTGCGAGTTT...TGGAGAGCTCGTCTGGATGGTAGAAATGAGGCCAGATGCTGGCAGGTGTCGAAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 |
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| 3UTR-3UTR GCA 90 bp | ATGGATGTGATAATTGTGTTGTCTCACTTCCTGGCTGTCCATACCCACACACAGACACTGGACAGGGCTTaGTGCCACACCCAGCTCAGG | + |
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Preference number: 2 (lower is better) Translates to: MDVIIVLSHFLAVHTHTQTLDRA*CHTQLR Trigger: CCTGAGCTGGGTGTGGCAGCAAGCCCTGTCCAGTGT...CTGTGTGTGGGTATGGACAGCCAGGAAGTGAGACAACACAATTATCACATCCAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027795.14 |
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| 3UTR-3UTR TCA 90 bp | TTGTTCGACACCTGCCAGCATCTGGCCTCATTTCTACCATCCAGACGAGCTCTCAACCCATGTGGGATGTaGAATGCGAAGGCAGAAACA | + |
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Preference number: 2 (lower is better) Translates to: LFDTCQHLASFLPSRRALNPCGM*NAKAET Trigger: TGTTTCTGCCTTCGCATTTCACATCCCACATGGGTT...GAGAGCTCGTCTGGATGGTAGAAATGAGGCCAGATGCTGGCAGGTGTCGAACAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 |
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| 3UTR CAA 90 bp | GAGGAGCACAAAGGCCGTGAAGCATCAATGGATGTGATAATTGTGTaGTCTCACTTCCTGGCTGTCCATACCCACACACAGAGCAGCTCT | + |
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Preference number: 2 (lower is better) Translates to: EEHKGREASMDVIIV*SHFLAVHTHTQSSS Trigger: AGAGCTGCTCTGTGTGTGGGTATGGACAGCCAGGAAGTGAGACAACACAATTATCACATCCATTGATGCTTCACGGCCTTTGTGCTCCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027795.14 |
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| 3UTR-3UTR GCA 90 bp | TTGTTCGACACCTGCCAGCATCTGGCCTCATTTCTACCATCCAGACGAGCTCTCATGTGGGATGTGAAATaGGAAGGCAGAAACAGACAC | + |
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Preference number: 2 (lower is better) Translates to: LFDTCQHLASFLPSRRALMWDVK*EGRNRH Trigger: GTGTCTGTTTCTGCCTTCGCATTTCACATCCCACAT...GAGAGCTCGTCTGGATGGTAGAAATGAGGCCAGATGCTGGCAGGTGTCGAACAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 |
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| 3UTR GCA 72 bp | TCTCCCCCTCCCCAGTTCACACTGGACAGGGCTTGCTaGCACACCCAGCTCAGGAAGCCACAGCCCAGGCTC | + |
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Preference number: 3 (lower is better) Translates to: SPPPQFTLDRAC*HTQLRKPQPRL Trigger: GAGCCTGGGCTGTGGCTTCCTGAGCTGGGTGTGGCAGCAAGCCCTGTCCAGTGTGAACTGGGGAGGGGGAGA 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 |
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| 3UTR-3UTR CAA 90 bp | AGCCCATGGTGTCCCTGTGGGTCTCAGCCATCCCTGAAGATCTGGCCTTGGCCCGAGCCATTCTGTCCCTaGTTCGACACCTGCCAGCAT | + |
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Preference number: 3 (lower is better) Translates to: SPWCPCGSQPSLKIWPWPEPFCP*FDTCQH Trigger: ATGCTGGCAGGTGTCGAACAAGGGACAGAATGGCTC...GGGCCAAGGCCAGATCTTCAGGGATGGCTGAGACCCACAGGGACACCATGGGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 |
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| 3UTR TCA 72 bp | GGGTCTCAGCCATCCCTGAAGATCTGGCCTTGGCCCTaGGCCATTCTGTCCCTTGTTCGACACCTGCCAGCA | + |
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Preference number: 3 (lower is better) Translates to: GSQPSLKIWPWP*AILSLVRHLPA Trigger: TGCTGGCAGGTGTCGAACAAGGGACAGAATGGCTCAGGGCCAAGGCCAGATCTTCAGGGATGGCTGAGACCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 |
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| 3UTR CCA 72 bp | GGCACGCCCATGCTCAGAGGGGCCCTGCAACCCATGTaGGATGTGAAATGCGAAGGCAGAAACAGACACACG | + |
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Preference number: 3 (lower is better) Translates to: GTPMLRGALQPM*DVKCEGRNRHT Trigger: CGTGTGTCTGTTTCTGCCTTCGCATTTCACATCCCACATGGGTTGCAGGGCCCCTCTGAGCATGGGCGTGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 |
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| 3UTR GCA 72 bp | CGTGAGAGGTGGCTCAGGGCAGTCCCCACAGCTTTCTaGCTTGCACTGAGCAAAGCATGTGACCACAGCTCT | + |
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Preference number: 3 (lower is better) Translates to: RERWLRAVPTAF*LALSKACDHSS Trigger: AGAGCTGTGGTCACATGCTTTGCTCAGTGCAAGGCAGAAAGCTGTGGGGACTGCCCTGAGCCACCTCTCACG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 |
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| 3UTR CCA 72 bp | AATGACAAGAGTCTTGGGCAGCCCATGGTGTCCCTGTaGGTCTCAGCCATCCCTGAAGATCTGGCCTTGGCC | + |
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Preference number: 3 (lower is better) Translates to: NDKSLGQPMVSL*VSAIPEDLALA Trigger: GGCCAAGGCCAGATCTTCAGGGATGGCTGAGACCCACAGGGACACCATGGGCTGCCCAAGACTCTTGTCATT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 |
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| 3UTR CCA 72 bp | CATCTCCAGAGGTTGAGTGTTTCATCAGCTACAAGCTaGCACGCCCATGCTCAGAGGGGCCCTGCAACCCAT | + |
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Preference number: 3 (lower is better) Translates to: HLQRLSVSSATS*HAHAQRGPATH Trigger: ATGGGTTGCAGGGCCCCTCTGAGCATGGGCGTGCCAGCTTGTAGCTGATGAAACACTCAACCTCTGGAGATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 |
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| 3UTR GCA 72 bp | CTTGGCCCTGAGCCATTCTGTCCCTTGTTCGACACCTaGCAGCATCTGGCCTCATTTCTACCATCCAGACGA | + |
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Preference number: 3 (lower is better) Translates to: LGPEPFCPLFDT*QHLASFLPSRR Trigger: TCGTCTGGATGGTAGAAATGAGGCCAGATGCTGGCAGGTGTCGAACAAGGGACAGAATGGCTCAGGGCCAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 |
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| 3UTR-3UTR CAA 90 bp | ATAATTGTGTTGTCTCACTTCCTGGCTGTCCATACCCACACACAGAGCAGCTCTCACACTGGACAGGGCTaGCTGCCACACCCAGCTCAG | + |
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Preference number: 3 (lower is better) Translates to: IIVLSHFLAVHTHTQSSSHTGQG*LPHPAQ Trigger: CTGAGCTGGGTGTGGCAGCAAGCCCTGTCCAGTGTG...AGAGCTGCTCTGTGTGTGGGTATGGACAGCCAGGAAGTGAGACAACACAATTAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027795.14 |
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| 3UTR CCA 72 bp | TATGACTCCCGTTCCTTTCATTCGGTCTCTGCCATCTaGGTCTCTCCGTCATCCCCATCTGGTGCTCCTCTA | + |
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Preference number: 3 (lower is better) Translates to: YDSRSFHSVSAI*VSPSSPSGAPL Trigger: TAGAGGAGCACCAGATGGGGATGACGGAGAGACCCAGATGGCAGAGACCGAATGAAAGGAACGGGAGTCATA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 |
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| 3UTR CCA 72 bp | AGCCATTCTGTCCCTTGTTCGACACCTGCCAGCATCTaGCCTCATTTCTACCATCCAGACGAGCTCTCCATG | + |
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Preference number: 3 (lower is better) Translates to: SHSVPCSTPASI*PHFYHPDELSM Trigger: CATGGAGAGCTCGTCTGGATGGTAGAAATGAGGCCAGATGCTGGCAGGTGTCGAACAAGGGACAGAATGGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 |
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| 3UTR TCA 72 bp | CAGACACACGTGGGTAACATGGCTCTGACTGCTGTATaGCTCCCGTTCCTTTCATTCGGTCTCTGCCATCTG | + |
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Preference number: 3 (lower is better) Translates to: QTHVGNMALTAV*LPFLSFGLCHL Trigger: CAGATGGCAGAGACCGAATGAAAGGAACGGGAGTCATACAGCAGTCAGAGCCATGTTACCCACGTGTGTCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 |
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| 3UTR TCA 72 bp | TGCCAACCATATGGATACCCCGGGGGTGGGTTGAAATaGGATGAGGTGAGCCACTCAAGTTGTTGCTGCATC | + |
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Preference number: 3 (lower is better) Translates to: CQPYGYPGGGLK*DEVSHSSCCCI Trigger: GATGCAGCAACAACTTGAGTGGCTCACCTCATCTCATTTCAACCCACCCCCGGGGTATCCATATGGTTGGCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027795.14 |
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| 3UTR-3UTR CAA 90 bp | ATAATTGTGTTGTCTCACTTCCTGGCTGTCCATACCCACACACAGAGCAGCTCTGAGCCATTCTGTCCCTaGTTCGACACCTGCCAGCAT | + |
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Preference number: 3 (lower is better) Translates to: IIVLSHFLAVHTHTQSSSEPFCP*FDTCQH Trigger: ATGCTGGCAGGTGTCGAACAAGGGACAGAATGGCTC...AGAGCTGCTCTGTGTGTGGGTATGGACAGCCAGGAAGTGAGACAACACAATTAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027795.14 |
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| 3UTR TCA 72 bp | GAAGGCAGAAACAGACACACGTGGGTAACATGGCTCTaGCTGCTGTATGACTCCCGTTCCTTTCATTCGGTC | + |
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Preference number: 3 (lower is better) Translates to: EGRNRHTWVTWL*LLYDSRSFHSV Trigger: GACCGAATGAAAGGAACGGGAGTCATACAGCAGTCAGAGCCATGTTACCCACGTGTGTCTGTTTCTGCCTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 |
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| 3UTR CCA 72 bp | CTGTCCATACCCACACACAGAGCAGCTCTCTGTTTCTaGGCTTCGCACTATTTTGAGGGGTTTGGTTTGGTT | + |
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Preference number: 3 (lower is better) Translates to: LSIPTHRAALCF*ASHYFEGFGLV Trigger: AACCAAACCAAACCCCTCAAAATAGTGCGAAGCCCAGAAACAGAGAGCTGCTCTGTGTGTGGGTATGGACAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027795.14 |
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| 3UTR TCA 72 bp | ACCATATGGATACCCCGGGGGTGGGTTGAAATGAGATaGGGTGAGCCACTCAAGTTGTTGCTGCATCTTAAA | + |
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Preference number: 3 (lower is better) Translates to: TIWIPRGWVEMR*GEPLKLLLHLK Trigger: TTTAAGATGCAGCAACAACTTGAGTGGCTCACCTCATCTCATTTCAACCCACCCCCGGGGTATCCATATGGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027795.14 |
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| 3UTR CCA 72 bp | TCTGATGAATTTTTGGCACAGTGGCAGAATACATCTTaGGAGGGTGAAGAACTCACACCTGGGACATGTTGC | + |
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Preference number: 3 (lower is better) Translates to: SDEFLAQWQNTS*EGEELTPGTCC Trigger: GCAACATGTCCCAGGTGTGAGTTCTTCACCCTCCCAAGATGTATTCTGCCACTGTGCCAAAAATTCATCAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027795.14 |
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| 3UTR TCA 72 bp | ATTTTTGGCACAGTGGCAGAATACATCTTGGGAGGGTaGAGAACTCACACCTGGGACATGTTGCAGACATTT | + |
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Preference number: 3 (lower is better) Translates to: IFGTVAEYILGG*RTHTWDMLQTF Trigger: AAATGTCTGCAACATGTCCCAGGTGTGAGTTCTTCACCCTCCCAAGATGTATTCTGCCACTGTGCCAAAAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027795.14 |
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| 3UTR CCA 72 bp | CATGTGAAACTCGCACAGTTCTGCTGCTCAGTGAAGTaGATGAAGGAAGTAATAATGGCATCTCCAGAGGTT | + |
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Preference number: 3 (lower is better) Translates to: HVKLAQFCCSVK*MKEVIMASPEV Trigger: AACCTCTGGAGATGCCATTATTACTTCCTTCATCCACTTCACTGAGCAGCAGAACTGTGCGAGTTTCACATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 |
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| 3UTR CCA 72 bp | CCAGCTGATTGGCATGTAATGACTCTGATGAATTTTTaGCACAGTGGCAGAATACATCTTGGGAGGGTGAAG | + |
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Preference number: 3 (lower is better) Translates to: PADWHVMTLMNF*HSGRIHLGRVK Trigger: CTTCACCCTCCCAAGATGTATTCTGCCACTGTGCCAAAAATTCATCAGAGTCATTACATGCCAATCAGCTGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027795.14 |
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| 3UTR CCA 72 bp | TTGGCATGTAATGACTCTGATGAATTTTTGGCACAGTaGCAGAATACATCTTGGGAGGGTGAAGAACTCACA | + |
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Preference number: 3 (lower is better) Translates to: LACNDSDEFLAQ*QNTSWEGEELT Trigger: TGTGAGTTCTTCACCCTCCCAAGATGTATTCTGCCACTGTGCCAAAAATTCATCAGAGTCATTACATGCCAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027795.14 |
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| CDS-3UTR TCA 90 bp | GAGCGTAAAAGTGACGTGAGAGGTGGCTCAGGGCAGTCCCCACAGCTTTCTGCCGGCAGCACCAGCTGCTaGCCCCTTTCTCTGCGACCC | + |
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Preference number: 4 (lower is better) Translates to: ERKSDVRGGSGQSPQLSAGSTSC*PLSLRP Trigger: GGGTCGCAGAGAAAGGGGTCAGCAGCTGGTGCTGCC...GGCAGAAAGCTGTGGGGACTGCCCTGAGCCACCTCTCACGTCACTTTTACGCTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000161880.8 |
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| CDS-3UTR TCA 90 bp | ATCCCCATCTGGTGCTCCTCTAGCCACAGCCGCAGTGGTTCCCAGCTTCGGCCTAGGTGTCCGCATTCATaGCAACTGGTGGGTCGTAGG | + |
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Preference number: 4 (lower is better) Translates to: IPIWCSSSHSRSGSQLRPRCPHS*QLVGRR Trigger: CCTACGACCCACCAGTTGTCATGAATGCGGACACCT...AGGCCGAAGCTGGGAACCACTGCGGCTGTGGCTAGAGGAGCACCAGATGGGGAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 |
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| CDS-3UTR TCA 90 bp | GGCACGCCCATGCTCAGAGGGGCCCTGCAACCCATGTGGGATGTGAAATGCGAAGAGCGCACAGGAACATaGTGCAGAAGAGGCTGTGGA | + |
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Preference number: 4 (lower is better) Translates to: GTPMLRGALQPMWDVKCEERTGT*CRRGCG Trigger: TCCACAGCCTCTTCTGCATCATGTTCCTGTGCGCTC...TTCGCATTTCACATCCCACATGGGTTGCAGGGCCCCTCTGAGCATGGGCGTGCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 |
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| CDS-3UTR TCA 90 bp | CTCCTGGACACAGAGCGTAAAAGTGACGTGAGAGGTGGCTCAGGGCAGTCCCCAAGGTGTCCGCATTCATaGCAACTGGTGGGTCGTAGG | + |
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Preference number: 4 (lower is better) Translates to: LLDTERKSDVRGGSGQSPRCPHS*QLVGRR Trigger: CCTACGACCCACCAGTTGTCATGAATGCGGACACCT...TGGGGACTGCCCTGAGCCACCTCTCACGTCACTTTTACGCTCTGTGTCCAGGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 |
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| CDS-3UTR GCA 90 bp | TCCCGTTCCTTTCATTCGGTCTCTGCCATCTGGGTCTCTCCGTCATCCCCATCTGCTGACCCCTTTCTCTaGGACCCTTCCTCCGTCCAC | + |
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Preference number: 4 (lower is better) Translates to: SRSFHSVSAIWVSPSSPSADPFL*DPSSVH Trigger: GTGGACGGAGGAAGGGTCGCAGAGAAAGGGGTCAGC...AGATGGGGATGACGGAGAGACCCAGATGGCAGAGACCGAATGAAAGGAACGGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000161880.8 |
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| 3UTR CAA 72 bp | TCCCTGTGGGTCTCAGCCATCCCTGAAGATCTGGCCTaGGCCCTGAGCCATTCTGTCCCTTGTTCGACACCT | + |
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Preference number: 4 (lower is better) Translates to: SLWVSAIPEDLA*ALSHSVPCSTP Trigger: AGGTGTCGAACAAGGGACAGAATGGCTCAGGGCCAAGGCCAGATCTTCAGGGATGGCTGAGACCCACAGGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 |
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| CDS-3UTR GCA 90 bp | CCCATGCTCAGAGGGGCCCTGCAACCCATGTGGGATGTGAAATGCGAAGGCAGATCGCATGAACCGGGTTaGACTGGTCTATGGGACTCT | + |
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Preference number: 4 (lower is better) Translates to: PMLRGALQPMWDVKCEGRSHEPG*TGLWDS Trigger: AGAGTCCCATAGACCAGTGCAACCCGGTTCATGCGA...TCTGCCTTCGCATTTCACATCCCACATGGGTTGCAGGGCCCCTCTGAGCATGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 |
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| CDS-3UTR TCA 90 bp | TCCAGACGAGCTCTCCATGTGAAACTCGCACAGTTCTGCTGCTCAGTGAAGTGGAGGGTGAGCCACTCCTaGGCGCACAGGAACATGATG | + |
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Preference number: 4 (lower is better) Translates to: SRRALHVKLAQFCCSVKWRVSHS*AHRNMM Trigger: CATCATGTTCCTGTGCGCTCAGGAGTGGCTCACCCT...CCACTTCACTGAGCAGCAGAACTGTGCGAGTTTCACATGGAGAGCTCGTCTGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 |
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| CDS-3UTR GCA 90 bp | TGGCTCAGGGCAGTCCCCACAGCTTTCTGCCTTGCACTGAGCAAAGCATGTGACTCGCATGAACCGGGTTaGACTGGTCTATGGGACTCT | + |
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Preference number: 4 (lower is better) Translates to: WLRAVPTAFCLALSKACDSHEPG*TGLWDS Trigger: AGAGTCCCATAGACCAGTGCAACCCGGTTCATGCGA...GTCACATGCTTTGCTCAGTGCAAGGCAGAAAGCTGTGGGGACTGCCCTGAGCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 |
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| CDS-3UTR TCA 90 bp | CCCATGCTCAGAGGGGCCCTGCAACCCATGTGGGATGTGAAATGCGAAGGCAGAGGTCTATGGGACTCTTaGAATCCGTTCTTAGCTCGT | + |
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Preference number: 4 (lower is better) Translates to: PMLRGALQPMWDVKCEGRGLWDS*NPFLAR Trigger: ACGAGCTAAGAACGGATTTCAAGAGTCCCATAGACC...TCTGCCTTCGCATTTCACATCCCACATGGGTTGCAGGGCCCCTCTGAGCATGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 |
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| CDS-3UTR TCA 90 bp | TTGTTCGACACCTGCCAGCATCTGGCCTCATTTCTACCATCCAGACGAGCTCTCGAGCGCACAGGAACATaGTGCAGAAGAGGCTGTGGA | + |
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Preference number: 4 (lower is better) Translates to: LFDTCQHLASFLPSRRALERTGT*CRRGCG Trigger: TCCACAGCCTCTTCTGCATCATGTTCCTGTGCGCTC...GAGAGCTCGTCTGGATGGTAGAAATGAGGCCAGATGCTGGCAGGTGTCGAACAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 |
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| CDS-3UTR TCA 90 bp | GCAGTCCCCACAGCTTTCTGCCTTGCACTGAGCAAAGCATGTGACCACAGCTCTGGTCTATGGGACTCTTaGAATCCGTTCTTAGCTCGT | + |
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Preference number: 4 (lower is better) Translates to: AVPTAFCLALSKACDHSSGLWDS*NPFLAR Trigger: ACGAGCTAAGAACGGATTTCAAGAGTCCCATAGACC...AGAGCTGTGGTCACATGCTTTGCTCAGTGCAAGGCAGAAAGCTGTGGGGACTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 |
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| 3UTR CAA 72 bp | AAAGGCCGTGAAGCATCAATGGATGTGATAATTGTGTaGTCTCACTTCCTGGCTGTCCATACCCACACACAG | + |
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Preference number: 4 (lower is better) Translates to: KGREASMDVIIV*SHFLAVHTHTQ Trigger: CTGTGTGTGGGTATGGACAGCCAGGAAGTGAGACAACACAATTATCACATCCATTGATGCTTCACGGCCTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027795.14 |
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| CDS-3UTR CAA 90 bp | AGCCCATGGTGTCCCTGTGGGTCTCAGCCATCCCTGAAGATCTGGCCTTGGCCCAAAAGCAGAGGAACATaGAGTCCCAGGGTGAGCCAC | + |
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Preference number: 5 (lower is better) Translates to: SPWCPCGSQPSLKIWPWPKSRGT*SPRVSH Trigger: GTGGCTCACCCTGGGACTCAATGTTCCTCTGCTTTT...GGGCCAAGGCCAGATCTTCAGGGATGGCTGAGACCCACAGGGACACCATGGGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 |
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| CDS-3UTR CAA 90 bp | GAGCGTAAAAGTGACGTGAGAGGTGGCTCAGGGCAGTCCCCACAGCTTTCTGCCTGGTCTATGGGACTCTaGAAATCCGTTCTTAGCTCG | + |
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Preference number: 5 (lower is better) Translates to: ERKSDVRGGSGQSPQLSAWSMGL*KSVLSS Trigger: CGAGCTAAGAACGGATTTCAAGAGTCCCATAGACCA...GGCAGAAAGCTGTGGGGACTGCCCTGAGCCACCTCTCACGTCACTTTTACGCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 |
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| CDS-3UTR CAA 90 bp | CCGTTCCTTTCATTCGGTCTCTGCCATCTGGGTCTCTCCGTCATCCCCATCTGGTGGTCTATGGGACTCTaGAAATCCGTTCTTAGCTCG | + |
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Preference number: 5 (lower is better) Translates to: PFLSFGLCHLGLSVIPIWWSMGL*KSVLSS Trigger: CGAGCTAAGAACGGATTTCAAGAGTCCCATAGACCA...CCAGATGGGGATGACGGAGAGACCCAGATGGCAGAGACCGAATGAAAGGAACGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 |
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| CDS-3UTR CAA 90 bp | TTGTTCGACACCTGCCAGCATCTGGCCTCATTTCTACCATCCAGACGAGCTCTCAAAAGCAGAGGAACATaGAGTCCCAGGGTGAGCCAC | + |
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Preference number: 5 (lower is better) Translates to: LFDTCQHLASFLPSRRALKSRGT*SPRVSH Trigger: GTGGCTCACCCTGGGACTCAATGTTCCTCTGCTTTT...GAGAGCTCGTCTGGATGGTAGAAATGAGGCCAGATGCTGGCAGGTGTCGAACAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 |
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| CDS GCA 90 bp | ATGGGACTCTTGAAATCCGTTCTTAGCTCGTCAAAGGCGATTATGTaGCAGATAGCGAAAAAGATGAGCGCAGCGCAGAGCACCAGGGAC | + |
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Preference number: 5 (lower is better) Translates to: MGLLKSVLSSSKAIM*QIAKKMSAAQSTRD Trigger: GTCCCTGGTGCTCTGCGCTGCGCTCATCTTTTTCGCTATCTGGCACATAATCGCCTTTGACGAGCTAAGAACGGATTTCAAGAGTCCCAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 ENSMUST00000162685.2 ENSMUST00000209607.2 |
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| CDS TCA 72 bp | AGCAGAGGAACATTGAGTCCCAGGGTGAGCCACTCCTaGGCGCACAGGAACATGATGCAGAAGAGGCTGTGG | + |
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Preference number: 6 (lower is better) Translates to: SRGTLSPRVSHS*AHRNMMQKRLW Trigger: CCACAGCCTCTTCTGCATCATGTTCCTGTGCGCTCAGGAGTGGCTCACCCTGGGACTCAATGTTCCTCTGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 ENSMUST00000162685.2 ENSMUST00000209607.2 |
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| CDS GCA 72 bp | TTGAAATCCGTTCTTAGCTCGTCAAAGGCGATTATGTaGCAGATAGCGAAAAAGATGAGCGCAGCGCAGAGC | + |
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Preference number: 6 (lower is better) Translates to: LKSVLSSSKAIM*QIAKKMSAAQS Trigger: GCTCTGCGCTGCGCTCATCTTTTTCGCTATCTGGCACATAATCGCCTTTGACGAGCTAAGAACGGATTTCAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000027795.14 ENSMUST00000161880.8 ENSMUST00000162685.2 ENSMUST00000209607.2 |
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