Pregenerated sensors for CNIH2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024873Ensembl transcript IDs: ENSMUST00000025805.8, ENSMUST00000235638.2
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGGCTGGGGGTGCACAGGCGTCCGGTCCGTTCTGGGCTTGCTCCCTaGCCGGCTTCCCCCTTAGAAGCTCACCAACGTATAAACCATACT | + |
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Preference number: 1 (lower is better) Translates to: GLGVHRRPVRSGLAP*PASPLEAHQRINHT Trigger: AGTATGGTTTATACGTTGGTGAGCTTCTAAGGGGGAAGCCGGCCAGGGAGCAAGCCCAGAACGGACCGGACGCCTGTGCACCCCCAGCCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000235638.2 |
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| 3UTR-3UTR CCA 90 bp | GGCAGGGCTGGGGGTGCACAGGCGTCCGGTCCGTTCTGGGCTTGCTCCCTGGCCCCAGAGGGGCAGGGCTaGGGGTGCACAGGCGTCCGG | + |
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Preference number: 2 (lower is better) Translates to: GRAGGAQASGPFWACSLAPEGQG*GCTGVR Trigger: CCGGACGCCTGTGCACCCCCAGCCCTGCCCCTCTGG...GGCCAGGGAGCAAGCCCAGAACGGACCGGACGCCTGTGCACCCCCAGCCCTGCC 74% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000025805.8 ENSMUST00000235638.2 |
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| 3UTR-3UTR CCA 90 bp | GGCAGGGCTGGGGGTGCACAGGCGTCCGGTCCGTTCTGGGCTTGCTCCCTGGCCGCGTCCGGTCCGTTCTaGGCTTGCTCCCTGGCCGGC | + |
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Preference number: 2 (lower is better) Translates to: GRAGGAQASGPFWACSLAASGPF*ACSLAG Trigger: GCCGGCCAGGGAGCAAGCCCAGAACGGACCGGACGC...GGCCAGGGAGCAAGCCCAGAACGGACCGGACGCCTGTGCACCCCCAGCCCTGCC 73% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025805.8 ENSMUST00000235638.2 |
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| 3UTR-3UTR GCA 90 bp | CCCTGGAGCGGACAAAACCGGAAGTCCTACCCCTTCCAGGACAACTGCCATGCCGGGCAGGGCTGGGGGTaGACAGGCGTCCGGTCCGTT | + |
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Preference number: 2 (lower is better) Translates to: PWSGQNRKSYPFQDNCHAGQGWG*TGVRSV Trigger: AACGGACCGGACGCCTGTGCACCCCCAGCCCTGCCC...GGCATGGCAGTTGTCCTGGAAGGGGTAGGACTTCCGGTTTTGTCCGCTCCAGGG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000025805.8 ENSMUST00000235638.2 |
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| 3UTR-3UTR CCA 90 bp | GACCTCAGAGCCATCCGCAGGACGGTGGAAGTACCTCCAGAGGTGGTAGAAGAGCCAGAGGGGCAGGGCTaGGGGTGCACAGGCGTCCGG | + |
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Preference number: 2 (lower is better) Translates to: DLRAIRRTVEVPPEVVEEPEGQG*GCTGVR Trigger: CCGGACGCCTGTGCACCCCCAGCCCTGCCCCTCTGG...CTCTTCTACCACCTCTGGAGGTACTTCCACCGTCCTGCGGATGGCTCTGAGGTC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000235638.2 |
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| 3UTR-3UTR GCA 90 bp | CAAGGTGGGCTGCCCAGTATTTCCAGGATCAAGGTCTGCCTGTTGGCAGGGCCCGGTCCGTTCTGGGCTTaGTCCCTGGCCGGCTTCCCC | + |
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Preference number: 2 (lower is better) Translates to: QGGLPSISRIKVCLLAGPGPFWA*SLAGFP Trigger: GGGGAAGCCGGCCAGGGAGCAAGCCCAGAACGGACC...GGGCCCTGCCAACAGGCAGACCTTGATCCTGGAAATACTGGGCAGCCCACCTTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025805.8 |
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| 3UTR-3UTR GCA 90 bp | CCCTGGAGCGGACAAAACCGGAAGTCCTACCCCTTCCAGGACAACTGCCATGCCGGTCCGTTCTGGGCTTaGTCCCTGGCCGGCTTCCCC | + |
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Preference number: 2 (lower is better) Translates to: PWSGQNRKSYPFQDNCHAGPFWA*SLAGFP Trigger: GGGGAAGCCGGCCAGGGAGCAAGCCCAGAACGGACC...GGCATGGCAGTTGTCCTGGAAGGGGTAGGACTTCCGGTTTTGTCCGCTCCAGGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025805.8 ENSMUST00000235638.2 |
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| 3UTR-3UTR GCA 90 bp | GGAAGTCCTACCCCTTCCAGGACAACTGCCATGCCTAGCTGCAGGCTAGCAGAGGGGCAGGGCTGGGGGTaGACAGGCGTCCGGTCCGTT | + |
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Preference number: 2 (lower is better) Translates to: GSPTPSRTTAMPSCRLAEGQGWG*TGVRSV Trigger: AACGGACCGGACGCCTGTGCACCCCCAGCCCTGCCC...CTCTGCTAGCCTGCAGCTAGGCATGGCAGTTGTCCTGGAAGGGGTAGGACTTCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000025805.8 ENSMUST00000235638.2 |
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| 3UTR-3UTR CCA 90 bp | GAGCGGACAAAACCGGAAGTCCTACCCCTTCCAGGACAACTGCCATGCCTAGCTGCGTCCGGTCCGTTCTaGGCTTGCTCCCTGGCCGGC | + |
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Preference number: 2 (lower is better) Translates to: ERTKPEVLPLPGQLPCLAASGPF*ACSLAG Trigger: GCCGGCCAGGGAGCAAGCCCAGAACGGACCGGACGC...AGCTAGGCATGGCAGTTGTCCTGGAAGGGGTAGGACTTCCGGTTTTGTCCGCTC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025805.8 ENSMUST00000235638.2 |
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| 3UTR-3UTR GCA 90 bp | CGTCCGGTCCGTTCTGGGCTTGCTCCCTGGCCGGCTTCCCCCTTAGAAGCTCACGGTCACCCACTCTGCTaGACACAGAAACATCAGACA | + |
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Preference number: 2 (lower is better) Translates to: RPVRSGLAPWPASPLEAHGHPLC*TQKHQT Trigger: TGTCTGATGTTTCTGTGTGCAGCAGAGTGGGTGACC...GTGAGCTTCTAAGGGGGAAGCCGGCCAGGGAGCAAGCCCAGAACGGACCGGACG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000235638.2 |
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| 3UTR-3UTR CCA 90 bp | CTGCAGGCTAGCAGAGAAGCCCCCACCCGTTTAGAGCTTTGCCTGGCCCTAGTCGGGATAAGTAGAGACTaGGTTGGAGAGAGAGCCTGG | + |
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Preference number: 2 (lower is better) Translates to: LQASREAPTRLELCLALVGISRD*VGERAW Trigger: CCAGGCTCTCTCTCCAACCCAGTCTCTACTTATCCC...GACTAGGGCCAGGCAAAGCTCTAAACGGGTGGGGGCTTCTCTGCTAGCCTGCAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025805.8 |
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| 3UTR-3UTR CCA 90 bp | CCCTGGAGCGGACAAAACCGGAAGTCCTACCCCTTCCAGGACAACTGCCATGCCAGACAGAAGAGGCCGTaGATGGAATATTCCGGGACC | + |
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Preference number: 2 (lower is better) Translates to: PWSGQNRKSYPFQDNCHARQKRP*MEYSGT Trigger: GGTCCCGGAATATTCCATCCACGGCCTCTTCTGTCT...GGCATGGCAGTTGTCCTGGAAGGGGTAGGACTTCCGGTTTTGTCCGCTCCAGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000235638.2 |
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| 3UTR-3UTR TCA 90 bp | GAGCGGACAAAACCGGAAGTCCTACCCCTTCCAGGACAACTGCCATGCCTAGCTAGACCGCATCATACATaGCCTCAGAGCCATCCGCAG | + |
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Preference number: 2 (lower is better) Translates to: ERTKPEVLPLPGQLPCLARPHHT*PQSHPQ Trigger: CTGCGGATGGCTCTGAGGTCATGTATGATGCGGTCT...AGCTAGGCATGGCAGTTGTCCTGGAAGGGGTAGGACTTCCGGTTTTGTCCGCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000235638.2 |
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| 3UTR-3UTR CCA 90 bp | GACCTCAGAGCCATCCGCAGGACGGTGGAAGTACCTCCAGAGGTGGTAGAAGAGAGAAGAGGCCGTGGATaGAATATTCCGGGACCACCA | + |
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Preference number: 2 (lower is better) Translates to: DLRAIRRTVEVPPEVVEERRGRG*NIPGPP Trigger: TGGTGGTCCCGGAATATTCCATCCACGGCCTCTTCT...CTCTTCTACCACCTCTGGAGGTACTTCCACCGTCCTGCGGATGGCTCTGAGGTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000235638.2 |
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| 3UTR-3UTR TCA 90 bp | CCCCTTAGAAGCTCACCAACGTATAAACCATACTGTACAGGTAATAGAAGAAGGAGAGGAGGGGGATGTTaGGGCCCAGGGTCACCCACT | + |
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Preference number: 2 (lower is better) Translates to: PLRSSPTYKPYCTGNRRRRGGGC*GPGSPT Trigger: AGTGGGTGACCCTGGGCCTCAACATCCCCCTCCTCT...CCTTCTTCTATTACCTGTACAGTATGGTTTATACGTTGGTGAGCTTCTAAGGGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000235638.2 |
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| 3UTR-3UTR CCA 90 bp | TTCCCCCTTAGAAGCTCACCAACGTATAAACCATACTGTACAGGTAATAGAAGACCATCCGCAGGACGGTaGAAGTACCTCCAGAGGTGG | + |
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Preference number: 2 (lower is better) Translates to: FPLRSSPTYKPYCTGNRRPSAGR*KYLQRW Trigger: CCACCTCTGGAGGTACTTCCACCGTCCTGCGGATGG...TCTTCTATTACCTGTACAGTATGGTTTATACGTTGGTGAGCTTCTAAGGGGGAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000235638.2 |
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| 3UTR CCA 72 bp | GGCAGGGCTGGGGGTGCACAGGCGTCCGGTCCGTTCTaGGCTTGCTCCCTGGCCGGCTTCCCCCTTAGAAGC | + |
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Preference number: 3 (lower is better) Translates to: GRAGGAQASGPF*ACSLAGFPLRS Trigger: GCTTCTAAGGGGGAAGCCGGCCAGGGAGCAAGCCCAGAACGGACCGGACGCCTGTGCACCCCCAGCCCTGCC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000235638.2 |
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| 3UTR-3UTR CAA 90 bp | GGCTGCCCAGTATTTCCAGGATCAAGGTCTGCCTGTTGGCAGGGCCCAAATTCCCGGTCCGTTCTGGGCTaGCTCCCTGGCCGGCTTCCC | + |
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Preference number: 3 (lower is better) Translates to: GCPVFPGSRSACWQGPNSRSVLG*LPGRLP Trigger: GGGAAGCCGGCCAGGGAGCAAGCCCAGAACGGACCG...GGAATTTGGGCCCTGCCAACAGGCAGACCTTGATCCTGGAAATACTGGGCAGCC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025805.8 ENSMUST00000235638.2 |
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| 3UTR CCA 72 bp | GTGCACAGGCGTCCGGTCCGTTCTGGGCTTGCTCCCTaGCCGGCTTCCCCCTTAGAAGCTCACCAACGTATA | + |
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Preference number: 3 (lower is better) Translates to: VHRRPVRSGLAP*PASPLEAHQRI Trigger: TATACGTTGGTGAGCTTCTAAGGGGGAAGCCGGCCAGGGAGCAAGCCCAGAACGGACCGGACGCCTGTGCAC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000235638.2 |
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| 3UTR GCA 72 bp | TGCACGGGGAGCTTCAGGGTGAGGGCCAAGGTGGGCTaGCCAGTATTTCCAGGATCAAGGTCTGCCTGTTGG | + |
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Preference number: 3 (lower is better) Translates to: CTGSFRVRAKVG*PVFPGSRSACW Trigger: CCAACAGGCAGACCTTGATCCTGGAAATACTGGGCAGCCCACCTTGGCCCTCACCCTGAAGCTCCCCGTGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025805.8 |
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| 3UTR-3UTR CAA 90 bp | GTCAGCATTCATGATAGAGACCGCATCATACATGACCTCAGAGCCATCCGCAGGCGGTCCGTTCTGGGCTaGCTCCCTGGCCGGCTTCCC | + |
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Preference number: 3 (lower is better) Translates to: VSIHDRDRIIHDLRAIRRRSVLG*LPGRLP Trigger: GGGAAGCCGGCCAGGGAGCAAGCCCAGAACGGACCG...CCTGCGGATGGCTCTGAGGTCATGTATGATGCGGTCTCTATCATGAATGCTGAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000235638.2 |
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| 3UTR-3UTR CAA 90 bp | GGCTTCCCCCTTAGAAGCTCACCAACGTATAAACCATACTGTACAGGTAATAGAAAGAGGAGGGGGATGTaGAGGCCCAGGGTCACCCAC | + |
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Preference number: 3 (lower is better) Translates to: GFPLRSSPTYKPYCTGNRKRRGM*RPRVTH Trigger: GTGGGTGACCCTGGGCCTCAACATCCCCCTCCTCTT...TCTATTACCTGTACAGTATGGTTTATACGTTGGTGAGCTTCTAAGGGGGAAGCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000235638.2 |
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| CDS-3UTR CCA 90 bp | GGCAGGGCTGGGGGTGCACAGGCGTCCGGTCCGTTCTGGGCTTGCTCCCTGGCCCTCGCGTGCCCGCGCTaGGTTCCCCTGGTCGATGGG | + |
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Preference number: 4 (lower is better) Translates to: GRAGGAQASGPFWACSLALACPR*VPLVDG Trigger: CCCATCGACCAGGGGAACCCAGCGCGGGCACGCGAG...GGCCAGGGAGCAAGCCCAGAACGGACCGGACGCCTGTGCACCCCCAGCCCTGCC 73% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025805.8 |
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| CDS-3UTR TCA 90 bp | GGGGGTGCACAGGCGTCCGGTCCGTTCTGGGCTTGCTCCCTGGCCGGCTTCCCCAGACCGCATCATACATaGCCTCAGAGCCATCCGCAG | + |
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Preference number: 4 (lower is better) Translates to: GGAQASGPFWACSLAGFPRPHHT*PQSHPQ Trigger: CTGCGGATGGCTCTGAGGTCATGTATGATGCGGTCT...GGGGAAGCCGGCCAGGGAGCAAGCCCAGAACGGACCGGACGCCTGTGCACCCCC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025805.8 |
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| CDS-3UTR CCA 90 bp | GGGGGTGCACAGGCGTCCGGTCCGTTCTGGGCTTGCTCCCTGGCCGGCTTCCCCAGAAGAGGCCGTGGATaGAATATTCCGGGACCACCA | + |
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Preference number: 4 (lower is better) Translates to: GGAQASGPFWACSLAGFPRRGRG*NIPGPP Trigger: TGGTGGTCCCGGAATATTCCATCCACGGCCTCTTCT...GGGGAAGCCGGCCAGGGAGCAAGCCCAGAACGGACCGGACGCCTGTGCACCCCC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025805.8 |
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| CDS-3UTR TCA 90 bp | TCCAGGACAACTGCCATGCCTAGCTGCAGGCTAGCAGAGAAGCCCCCACCCGTTAGAGGAGGGGGATGTTaGGGCCCAGGGTCACCCACT | + |
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Preference number: 4 (lower is better) Translates to: SRTTAMPSCRLAEKPPPVRGGGC*GPGSPT Trigger: AGTGGGTGACCCTGGGCCTCAACATCCCCCTCCTCT...AACGGGTGGGGGCTTCTCTGCTAGCCTGCAGCTAGGCATGGCAGTTGTCCTGGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000025805.8 |
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| CDS-3UTR CCA 90 bp | TCCAGGACAACTGCCATGCCTAGCTGCAGGCTAGCAGAGAAGCCCCCACCCGTTCGCGCTGGGTTCCCCTaGTCGATGGGGTTCTTGAAG | + |
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Preference number: 4 (lower is better) Translates to: SRTTAMPSCRLAEKPPPVRAGFP*SMGFLK Trigger: CTTCAAGAACCCCATCGACCAGGGGAACCCAGCGCG...AACGGGTGGGGGCTTCTCTGCTAGCCTGCAGCTAGGCATGGCAGTTGTCCTGGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000025805.8 ENSMUST00000235638.2 |
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| CDS-3UTR CCA 90 bp | CAAGGTGGGCTGCCCAGTATTTCCAGGATCAAGGTCTGCCTGTTGGCAGGGCCCCCATCCGCAGGACGGTaGAAGTACCTCCAGAGGTGG | + |
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Preference number: 4 (lower is better) Translates to: QGGLPSISRIKVCLLAGPPSAGR*KYLQRW Trigger: CCACCTCTGGAGGTACTTCCACCGTCCTGCGGATGG...GGGCCCTGCCAACAGGCAGACCTTGATCCTGGAAATACTGGGCAGCCCACCTTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025805.8 |
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| CDS-3UTR CCA 90 bp | GGCTGCCCAGTATTTCCAGGATCAAGGTCTGCCTGTTGGCAGGGCCCAAATTCCACTTACTGCCCGCGCTaGGTTCCCCTGGTCGATGGG | + |
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Preference number: 4 (lower is better) Translates to: GCPVFPGSRSACWQGPNSTYCPR*VPLVDG Trigger: CCCATCGACCAGGGGAACCCAGCGCGGGCAGTAAGT...GGAATTTGGGCCCTGCCAACAGGCAGACCTTGATCCTGGAAATACTGGGCAGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235638.2 |
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| CDS-3UTR TCA 90 bp | TCCAGGACAACTGCCATGCCTAGCTGCAGGCTAGCAGAGAAGCCCCCACCCGTTGGTCGATGGGGTTCTTaGAGTCAGTCCGCAGCTCAT | + |
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Preference number: 4 (lower is better) Translates to: SRTTAMPSCRLAEKPPPVGRWGS*SQSAAH Trigger: ATGAGCTGCGGACTGACTTCAAGAACCCCATCGACC...AACGGGTGGGGGCTTCTCTGCTAGCCTGCAGCTAGGCATGGCAGTTGTCCTGGA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025805.8 ENSMUST00000235638.2 |
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| CDS-3UTR TCA 90 bp | CCCTGGAGCGGACAAAACCGGAAGTCCTACCCCTTCCAGGACAACTGCCATGCCGGTCGATGGGGTTCTTaGAGTCAGTCCGCAGCTCAT | + |
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Preference number: 4 (lower is better) Translates to: PWSGQNRKSYPFQDNCHAGRWGS*SQSAAH Trigger: ATGAGCTGCGGACTGACTTCAAGAACCCCATCGACC...GGCATGGCAGTTGTCCTGGAAGGGGTAGGACTTCCGGTTTTGTCCGCTCCAGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000025805.8 ENSMUST00000235638.2 |
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| CDS-3UTR GCA 90 bp | GGGAGCTTCAGGGTGAGGGCCAAGGTGGGCTGCCCAGTATTTCCAGGATCAAGGGGTAGAAGGCGAGTTTaGACCAGGACTCCTTCTGGC | + |
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Preference number: 4 (lower is better) Translates to: GSFRVRAKVGCPVFPGSRGRRRV*TRTPSG Trigger: GCCAGAAGGAGTCCTGGTGCAAACTCGCCTTCTACC...CCTTGATCCTGGAAATACTGGGCAGCCCACCTTGGCCCTCACCCTGAAGCTCCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025805.8 |
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| CDS-3UTR CCA 90 bp | CTGCAGGCTAGCAGAGAAGCCCCCACCCGTTTAGAGCTTTGCCTGGCCCTAGTCAGACAGAAGAGGCCGTaGATGGAATATTCCGGGACC | + |
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Preference number: 4 (lower is better) Translates to: LQASREAPTRLELCLALVRQKRP*MEYSGT Trigger: GGTCCCGGAATATTCCATCCACGGCCTCTTCTGTCT...GACTAGGGCCAGGCAAAGCTCTAAACGGGTGGGGGCTTCTCTGCTAGCCTGCAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025805.8 |
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| CDS-3UTR CCA 90 bp | CACAGAAACATCAGACAGAAGAGGCCGTGGATGGAATATTCCGGGACCACCAGCCGCGCTGGGTTCCCCTaGTCGATGGGGTTCTTGAAG | + |
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Preference number: 4 (lower is better) Translates to: HRNIRQKRPWMEYSGTTSRAGFP*SMGFLK Trigger: CTTCAAGAACCCCATCGACCAGGGGAACCCAGCGCG...GCTGGTGGTCCCGGAATATTCCATCCACGGCCTCTTCTGTCTGATGTTTCTGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000235638.2 |
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| CDS-3UTR GCA 90 bp | GGAAGTCCTACCCCTTCCAGGACAACTGCCATGCCTAGCTGCAGGCTAGCAGAGGGTCACCCACTCTGCTaGACACAGAAACATCAGACA | + |
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Preference number: 4 (lower is better) Translates to: GSPTPSRTTAMPSCRLAEGHPLC*TQKHQT Trigger: TGTCTGATGTTTCTGTGTGCAGCAGAGTGGGTGACC...CTCTGCTAGCCTGCAGCTAGGCATGGCAGTTGTCCTGGAAGGGGTAGGACTTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025805.8 |
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| CDS-3UTR GCA 90 bp | AGCCCCCACCCGTTTAGAGCTTTGCCTGGCCCTAGTCAGAAGGGGAGAGCTCTGTCAGGAGGCAGCAGATaGGTTCGATGTTTTTCAAAC | + |
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Preference number: 4 (lower is better) Translates to: SPHPFRALPGPSQKGRALSGGSR*VRCFSN Trigger: GTTTGAAAAACATCGAACGCATCTGCTGCCTCCTGA...CAGAGCTCTCCCCTTCTGACTAGGGCCAGGCAAAGCTCTAAACGGGTGGGGGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000025805.8 |
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| CDS-3UTR GCA 90 bp | CCCCTTAGAAGCTCACCAACGTATAAACCATACTGTACAGGTAATAGAAGAAGGACATGTATCACTTACTaGCCGCGCTGGGTTCCCCTG | + |
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Preference number: 4 (lower is better) Translates to: PLRSSPTYKPYCTGNRRRTCITY*PRWVPL Trigger: CAGGGGAACCCAGCGCGGGCAGTAAGTGATACATGT...CCTTCTTCTATTACCTGTACAGTATGGTTTATACGTTGGTGAGCTTCTAAGGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000235638.2 |
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| CDS-3UTR CAA 90 bp | GGGGGTGCACAGGCGTCCGGTCCGTTCTGGGCTTGCTCCCTGGCCGGCTTCCCCAAGAGGAGGGGGATGTaGAGGCCCAGGGTCACCCAC | + |
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Preference number: 5 (lower is better) Translates to: GGAQASGPFWACSLAGFPKRRGM*RPRVTH Trigger: GTGGGTGACCCTGGGCCTCAACATCCCCCTCCTCTT...GGGGAAGCCGGCCAGGGAGCAAGCCCAGAACGGACCGGACGCCTGTGCACCCCC 70% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000025805.8 |
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| CDS-3UTR CAA 90 bp | GGGGGTGCACAGGCGTCCGGTCCGTTCTGGGCTTGCTCCCTGGCCGGCTTCCCCTGGTCGATGGGGTTCTaGAAGTCAGTCCGCAGCTCA | + |
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Preference number: 5 (lower is better) Translates to: GGAQASGPFWACSLAGFPWSMGF*KSVRSS Trigger: TGAGCTGCGGACTGACTTCAAGAACCCCATCGACCA...GGGGAAGCCGGCCAGGGAGCAAGCCCAGAACGGACCGGACGCCTGTGCACCCCC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000025805.8 ENSMUST00000235638.2 |
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| CDS CCA 90 bp | AACGCTCGCGCTCAGCACAGCACATGTATCACTTACTGCCCGCGCTaGGTTCCCCTGGTCGATGGGGTTCTTGAAGTCAGTCCGCAGCTC | + |
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Preference number: 5 (lower is better) Translates to: NARAQHSTCITYCPR*VPLVDGVLEVSPQL Trigger: GAGCTGCGGACTGACTTCAAGAACCCCATCGACCAGGGGAACCCAGCGCGGGCAGTAAGTGATACATGTGCTGTGCTGAGCGCGAGCGTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000235638.2 |
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| CDS-3UTR CAA 90 bp | CCAGGACTCCTTCTGGCAGTAGTTGAGGATGTCAGCATTCATGATAGAGACCGCTGGTCGATGGGGTTCTaGAAGTCAGTCCGCAGCTCA | + |
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Preference number: 5 (lower is better) Translates to: PGLLLAVVEDVSIHDRDRWSMGF*KSVRSS Trigger: TGAGCTGCGGACTGACTTCAAGAACCCCATCGACCA...GCGGTCTCTATCATGAATGCTGACATCCTCAACTACTGCCAGAAGGAGTCCTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235638.2 |
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| CDS GCA 72 bp | AACGCTCGCGCTCAGCACAGCACATGTATCACTTACTaGCCGCGCTGGGTTCCCCTGGTCGATGGGGTTCTT | + |
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Preference number: 6 (lower is better) Translates to: NARAQHSTCITY*PRWVPLVDGVL Trigger: AAGAACCCCATCGACCAGGGGAACCCAGCGCGGGCAGTAAGTGATACATGTGCTGTGCTGAGCGCGAGCGTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000235638.2 |
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