Pregenerated sensors for CNIH1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000015759Ensembl transcript IDs: ENSMUST00000015903.12, ENSMUST00000146629.3
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CGGGCTGAGGGCGGTCAGAAATTAATGCAATCATTCGGAGGGTTATaGCTGTTCCTTAAGAGTGCAAGTTCAACCTGTCAACACCAGAGG | + |
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Preference number: 1 (lower is better) Translates to: RAEGGQKLMQSFGGL*LFLKSASSTCQHQR Trigger: CCTCTGGTGTTGACAGGTTGAACTTGCACTCTTAAGGAACAGCCATAACCCTCCGAATGATTGCATTAATTTCTGACCGCCCTCAGCCCG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015903.12 |
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| 3UTR TCA 90 bp | TTCTTCTTACTGTTGTGTCCATATAGAATCATCTACAGTGATAAGTaGGGAACCTACCATGTTCCTCACGAGTCAGACACTTTCAGTTCA | + |
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Preference number: 1 (lower is better) Translates to: FFLLLCPYRIIYSDK*GTYHVPHESDTFSS Trigger: TGAACTGAAAGTGTCTGACTCGTGAGGAACATGGTAGGTTCCTCACTTATCACTGTAGATGATTCTATATGGACACAACAGTAAGAAGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015903.12 |
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| 3UTR TCA 90 bp | TGTTTGTATCACTTAGGCTTAAGAATTAAAGCAAGTGTATTACTCTaGTGGAATGAGGGAGACCCCTCTCATGCAATACATAGGGATAAT | + |
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Preference number: 1 (lower is better) Translates to: CLYHLGLRIKASVLL*WNEGDPSHAIHRDN Trigger: ATTATCCCTATGTATTGCATGAGAGGGGTCTCCCTCATTCCATCAGAGTAATACACTTGCTTTAATTCTTAAGCCTAAGTGATACAAACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015903.12 |
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| 3UTR-3UTR CCA 90 bp | CATGTTCCTCACGAGTCAGACACTTTCAGTTCACCAGAAGCACCTCCTATCTACATAGAATCCCTTCATTaGTGGCGTTTTGCATGCACT | + |
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Preference number: 2 (lower is better) Translates to: HVPHESDTFSSPEAPPIYIESLH*WRFACT Trigger: AGTGCATGCAAAACGCCACCAATGAAGGGATTCTAT...GTAGATAGGAGGTGCTTCTGGTGAACTGAAAGTGTCTGACTCGTGAGGAACATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015903.12 |
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| 3UTR-3UTR GCA 90 bp | CAGACACTTTCAGTTCACCAGAAGCACCTCCTATCTACAGCTAACATATTTAGATCATTGGTGGCGTTTTaGATGCACTTAACTGGACCG | + |
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Preference number: 2 (lower is better) Translates to: QTLSVHQKHLLSTANIFRSLVAF*MHLTGP Trigger: CGGTCCAGTTAAGTGCATGCAAAACGCCACCAATGA...TCTAAATATGTTAGCTGTAGATAGGAGGTGCTTCTGGTGAACTGAAAGTGTCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015903.12 |
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| 3UTR-3UTR CCA 90 bp | CAGACACTTTCAGTTCACCAGAAGCACCTCCTATCTACAGCTAACATATTTAGAGAAACAGGACCTTGCTaGATAGAATCCCTTCATTGG | + |
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Preference number: 2 (lower is better) Translates to: QTLSVHQKHLLSTANIFRETGPC*IESLHW Trigger: CCAATGAAGGGATTCTATCCAGCAAGGTCCTGTTTC...TCTAAATATGTTAGCTGTAGATAGGAGGTGCTTCTGGTGAACTGAAAGTGTCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015903.12 |
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| 3UTR-3UTR CCA 90 bp | TCTTACTGTTGTGTCCATATAGAATCATCTACAGTGATAAGTGAGGAACCTACCTCCATAGGCTACTCTTaGAAACAGGACCTTGCTGGA | + |
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Preference number: 2 (lower is better) Translates to: SYCCVHIESSTVISEEPTSIGYS*KQDLAG Trigger: TCCAGCAAGGTCCTGTTTCCAAGAGTAGCCTATGGA...GGTAGGTTCCTCACTTATCACTGTAGATGATTCTATATGGACACAACAGTAAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015903.12 |
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| 3UTR-3UTR CAA 90 bp | GAGGGCGGTCAGAAATTAATGCAATCATTCGGAGGGTTATGGCTGTTCCTTAAGTTCATTGGTGGCGTTTaGCATGCACTTAACTGGACC | + |
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Preference number: 3 (lower is better) Translates to: EGGQKLMQSFGGLWLFLKFIGGV*HALNWT Trigger: GGTCCAGTTAAGTGCATGCAAAACGCCACCAATGAA...CTTAAGGAACAGCCATAACCCTCCGAATGATTGCATTAATTTCTGACCGCCCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015903.12 |
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| 3UTR-3UTR CAA 90 bp | CTCATGCAATACATAGGGATAATATTCAAGTCGACAGGGACGAGGCCCCATTCTGATAGAATCCCTTCATaGGTGGCGTTTTGCATGCAC | + |
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Preference number: 3 (lower is better) Translates to: LMQYIGIIFKSTGTRPHSDRIPS*VAFCMH Trigger: GTGCATGCAAAACGCCACCAATGAAGGGATTCTATC...AGAATGGGGCCTCGTCCCTGTCGACTTGAATATTATCCCTATGTATTGCATGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015903.12 |
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| 3UTR CCA 72 bp | AGATTCCATAGGCTACTCTTGGAAACAGGACCTTGCTaGATAGAATCCCTTCATTGGTGGCGTTTTGCATGC | + |
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Preference number: 3 (lower is better) Translates to: RFHRLLLETGPC*IESLHWWRFAC Trigger: GCATGCAAAACGCCACCAATGAAGGGATTCTATCCAGCAAGGTCCTGTTTCCAAGAGTAGCCTATGGAATCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015903.12 ENSMUST00000146629.3 |
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| 3UTR GCA 72 bp | ACCTTGCTGGATAGAATCCCTTCATTGGTGGCGTTTTaGATGCACTTAACTGGACCGATTCTTCTGTGTTGT | + |
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Preference number: 3 (lower is better) Translates to: TLLDRIPSLVAF*MHLTGPILLCC Trigger: ACAACACAGAAGAATCGGTCCAGTTAAGTGCATGCAAAACGCCACCAATGAAGGGATTCTATCCAGCAAGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015903.12 ENSMUST00000146629.3 |
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| 3UTR GCA 72 bp | ATCAGATTCCATAGGCTACTCTTGGAAACAGGACCTTaGTGGATAGAATCCCTTCATTGGTGGCGTTTTGCA | + |
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Preference number: 3 (lower is better) Translates to: IRFHRLLLETGP*WIESLHWWRFA Trigger: TGCAAAACGCCACCAATGAAGGGATTCTATCCAGCAAGGTCCTGTTTCCAAGAGTAGCCTATGGAATCTGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015903.12 ENSMUST00000146629.3 |
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| 3UTR-3UTR CAA 90 bp | GGATTGAGAGGGTTTGAGAAACAGCTGTTTGTAATCTTTCAAACAATGCACAGCTTCCATAGGCTACTCTaGGAAACAGGACCTTGCTGG | + |
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Preference number: 3 (lower is better) Translates to: GLRGFEKQLFVIFQTMHSFHRLL*ETGPCW Trigger: CCAGCAAGGTCCTGTTTCCAAGAGTAGCCTATGGAA...GCTGTGCATTGTTTGAAAGATTACAAACAGCTGTTTCTCAAACCCTCTCAATCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015903.12 |
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| 3UTR-3UTR CAA 90 bp | GTCAGACACTTTCAGTTCACCAGAAGCACCTCCTATCTACAGCTAACATATTTACTTGGAAACAGGACCTaGCTGGATAGAATCCCTTCA | + |
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Preference number: 3 (lower is better) Translates to: VRHFQFTRSTSYLQLTYLLGNRT*LDRIPS Trigger: TGAAGGGATTCTATCCAGCAAGGTCCTGTTTCCAAG...TAAATATGTTAGCTGTAGATAGGAGGTGCTTCTGGTGAACTGAAAGTGTCTGAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015903.12 |
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| 3UTR TCA 72 bp | CACTTAGGCTTAAGAATTAAAGCAAGTGTATTACTCTaGTGGAATGAGGGAGACCCCTCTCATGCAATACAT | + |
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Preference number: 3 (lower is better) Translates to: HLGLRIKASVLL*WNEGDPSHAIH Trigger: ATGTATTGCATGAGAGGGGTCTCCCTCATTCCATCAGAGTAATACACTTGCTTTAATTCTTAAGCCTAAGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015903.12 |
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| CDS-3UTR TCA 90 bp | ACTCTTGGAAACAGGACCTTGCTGGATAGAATCCCTTCATTGGTGGCGTTTTGCCCAAAAGGGGCATATTaGGGCCCAGGGTCAGCCACT | + |
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Preference number: 4 (lower is better) Translates to: TLGNRTLLDRIPSLVAFCPKGAY*GPGSAT Trigger: AGTGGCTGACCCTGGGCCTCAATATGCCCCTTTTGG...GCAAAACGCCACCAATGAAGGGATTCTATCCAGCAAGGTCCTGTTTCCAAGAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000015903.12 ENSMUST00000146629.3 |
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| CDS-3UTR GCA 90 bp | ACTCTTGGAAACAGGACCTTGCTGGATAGAATCCCTTCATTGGTGGCGTTTTGCCAGGGTCAGCCACTCTaGCGCACAGAGAAACATGAC | + |
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Preference number: 4 (lower is better) Translates to: TLGNRTLLDRIPSLVAFCQGQPL*RTEKHD Trigger: GTCATGTTTCTCTGTGCGGCAGAGTGGCTGACCCTG...GCAAAACGCCACCAATGAAGGGATTCTATCCAGCAAGGTCCTGTTTCCAAGAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015903.12 ENSMUST00000146629.3 |
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| CDS-3UTR TCA 90 bp | TCGGAGGGTTATGGCTGTTCCTTAAGAGTGCAAGTTCAACCTGTCAACACCAGAAGAAGAACGCGTGGATaGGGTACTCTGGAAGGACAA | + |
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Preference number: 4 (lower is better) Translates to: SEGYGCSLRVQVQPVNTRRRTRG*GTLEGQ Trigger: TTGTCCTTCCAGAGTACCTCATCCACGCGTTCTTCT...TCTGGTGTTGACAGGTTGAACTTGCACTCTTAAGGAACAGCCATAACCCTCCGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015903.12 |
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| CDS-3UTR TCA 90 bp | GCTACTCTTGGAAACAGGACCTTGCTGGATAGAATCCCTTCATTGGTGGCGTTTAGAAGAACGCGTGGATaGGGTACTCTGGAAGGACAA | + |
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Preference number: 4 (lower is better) Translates to: ATLGNRTLLDRIPSLVAFRRTRG*GTLEGQ Trigger: TTGTCCTTCCAGAGTACCTCATCCACGCGTTCTTCT...AAACGCCACCAATGAAGGGATTCTATCCAGCAAGGTCCTGTTTCCAAGAGTAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015903.12 ENSMUST00000146629.3 |
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| CDS-3UTR CCA 90 bp | CCTTCATTGGTGGCGTTTTGCATGCACTTAACTGGACCGATTCTTCTGTGTTGTGTGGATGAGGTACTCTaGAAGGACAAGAGGGTTCAG | + |
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Preference number: 4 (lower is better) Translates to: PSLVAFCMHLTGPILLCCVDEVL*KDKRVQ Trigger: CTGAACCCTCTTGTCCTTCCAGAGTACCTCATCCAC...ACAACACAGAAGAATCGGTCCAGTTAAGTGCATGCAAAACGCCACCAATGAAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015903.12 |
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| CDS-3UTR CCA 90 bp | CTGGATAGAATCCCTTCATTGGTGGCGTTTTGCATGCACTTAACTGGACCGATTAGGGCCGCTCATCACTaGTCTACTCATATACCTCCA | + |
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Preference number: 4 (lower is better) Translates to: LDRIPSLVAFCMHLTGPIRAAHH*STHIPP Trigger: TGGAGGTATATGAGTAGACCAGTGATGAGCGGCCCT...AATCGGTCCAGTTAAGTGCATGCAAAACGCCACCAATGAAGGGATTCTATCCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015903.12 ENSMUST00000146629.3 |
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| CDS-3UTR CCA 90 bp | AGAATCCCTTCATTGGTGGCGTTTTGCATGCACTTAACTGGACCGATTCTTCTGAGGGCCGCTCATCACTaGTCTACTCATATACCTCCA | + |
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Preference number: 4 (lower is better) Translates to: RIPSLVAFCMHLTGPILLRAAHH*STHIPP Trigger: TGGAGGTATATGAGTAGACCAGTGATGAGCGGCCCT...CAGAAGAATCGGTCCAGTTAAGTGCATGCAAAACGCCACCAATGAAGGGATTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015903.12 ENSMUST00000146629.3 |
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| CDS-3UTR TCA 90 bp | GACAGGGACGAGGCCCCATTCTTCTTACTGTTGTGTCCATATAGAATCATCTACGCTCATCAAATGCTATaGTGTGCCAGATGGCGAAGA | + |
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Preference number: 4 (lower is better) Translates to: DRDEAPFFLLLCPYRIIYAHQML*CARWRR Trigger: TCTTCGCCATCTGGCACATCATAGCATTTGATGAGC...GTAGATGATTCTATATGGACACAACAGTAAGAAGAATGGGGCCTCGTCCCTGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015903.12 |
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| CDS-3UTR TCA 90 bp | CCTTCATTGGTGGCGTTTTGCATGCACTTAACTGGACCGATTCTTCTGTGTTGTGCTCATCAAATGCTATaGTGTGCCAGATGGCGAAGA | + |
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Preference number: 4 (lower is better) Translates to: PSLVAFCMHLTGPILLCCAHQML*CARWRR Trigger: TCTTCGCCATCTGGCACATCATAGCATTTGATGAGC...ACAACACAGAAGAATCGGTCCAGTTAAGTGCATGCAAAACGCCACCAATGAAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015903.12 ENSMUST00000146629.3 |
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| CDS-3UTR TCA 90 bp | CTGATCAGATTCCATAGGCTACTCTTGGAAACAGGACCTTGCTGGATAGAATCCGAATGTCTGCATTCATaGTGGTCGTCGGGTCATAGA | + |
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Preference number: 4 (lower is better) Translates to: LIRFHRLLLETGPCWIESECLHS*WSSGHR Trigger: TCTATGACCCGACGACCATCATGAATGCAGACATTC...GGATTCTATCCAGCAAGGTCCTGTTTCCAAGAGTAGCCTATGGAATCTGATCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015903.12 ENSMUST00000146629.3 |
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| CDS-3UTR TCA 90 bp | AGAATCCCTTCATTGGTGGCGTTTTGCATGCACTTAACTGGACCGATTCTTCTGGAATGTCTGCATTCATaGTGGTCGTCGGGTCATAGA | + |
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Preference number: 4 (lower is better) Translates to: RIPSLVAFCMHLTGPILLECLHS*WSSGHR Trigger: TCTATGACCCGACGACCATCATGAATGCAGACATTC...CAGAAGAATCGGTCCAGTTAAGTGCATGCAAAACGCCACCAATGAAGGGATTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015903.12 ENSMUST00000146629.3 |
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| CDS-3UTR CCA 90 bp | AGATTCCATAGGCTACTCTTGGAAACAGGACCTTGCTGGATAGAATCCCTTCATACACAGAAGAACGCGTaGATGAGGTACTCTGGAAGG | + |
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Preference number: 4 (lower is better) Translates to: RFHRLLLETGPCWIESLHTQKNA*MRYSGR Trigger: CCTTCCAGAGTACCTCATCCACGCGTTCTTCTGTGT...ATGAAGGGATTCTATCCAGCAAGGTCCTGTTTCCAAGAGTAGCCTATGGAATCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015903.12 ENSMUST00000146629.3 |
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| 3UTR CAA 72 bp | CTTGGAAACAGGACCTTGCTGGATAGAATCCCTTCATaGGTGGCGTTTTGCATGCACTTAACTGGACCGATT | + |
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Preference number: 4 (lower is better) Translates to: LGNRTLLDRIPS*VAFCMHLTGPI Trigger: AATCGGTCCAGTTAAGTGCATGCAAAACGCCACCAATGAAGGGATTCTATCCAGCAAGGTCCTGTTTCCAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015903.12 ENSMUST00000146629.3 |
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| CDS-3UTR GCA 90 bp | TCTTACTGTTGTGTCCATATAGAATCATCTACAGTGATAAGTGAGGAACCTACCCAGGGTCAGCCACTCTaGCGCACAGAGAAACATGAC | + |
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Preference number: 4 (lower is better) Translates to: SYCCVHIESSTVISEEPTQGQPL*RTEKHD Trigger: GTCATGTTTCTCTGTGCGGCAGAGTGGCTGACCCTG...GGTAGGTTCCTCACTTATCACTGTAGATGATTCTATATGGACACAACAGTAAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015903.12 |
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| CDS-3UTR GCA 90 bp | CCTTCATTGGTGGCGTTTTGCATGCACTTAACTGGACCGATTCTTCTGTGTTGTCCTCCAAATATGGTATaGCAAAAGGGGCATATTGAG | + |
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Preference number: 4 (lower is better) Translates to: PSLVAFCMHLTGPILLCCPPNMV*QKGHIE Trigger: CTCAATATGCCCCTTTTGGCATACCATATTTGGAGG...ACAACACAGAAGAATCGGTCCAGTTAAGTGCATGCAAAACGCCACCAATGAAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000015903.12 ENSMUST00000146629.3 |
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| CDS-3UTR GCA 90 bp | ACAGGGACGAGGCCCCATTCTTCTTACTGTTGTGTCCATATAGAATCATCTACAGGTAAAAAGCGAGTTTaGACCATCCTTCCTTCTGAC | + |
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Preference number: 4 (lower is better) Translates to: TGTRPHSSYCCVHIESSTGKKRV*TILPSD Trigger: GTCAGAAGGAAGGATGGTGCAAACTCGCTTTTTACC...TGTAGATGATTCTATATGGACACAACAGTAAGAAGAATGGGGCCTCGTCCCTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000015903.12 |
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| CDS-3UTR GCA 90 bp | AGATTCCATAGGCTACTCTTGGAAACAGGACCTTGCTGGATAGAATCCCTTCATCCTCCAAATATGGTATaGCAAAAGGGGCATATTGAG | + |
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Preference number: 4 (lower is better) Translates to: RFHRLLLETGPCWIESLHPPNMV*QKGHIE Trigger: CTCAATATGCCCCTTTTGGCATACCATATTTGGAGG...ATGAAGGGATTCTATCCAGCAAGGTCCTGTTTCCAAGAGTAGCCTATGGAATCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000015903.12 ENSMUST00000146629.3 |
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| CDS-3UTR CCA 90 bp | TTCACCAGAAGCACCTCCTATCTACAGCTAACATATTTAGATGGCATTTCAATAACACAGAAGAACGCGTaGATGAGGTACTCTGGAAGG | + |
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Preference number: 4 (lower is better) Translates to: FTRSTSYLQLTYLDGISITQKNA*MRYSGR Trigger: CCTTCCAGAGTACCTCATCCACGCGTTCTTCTGTGT...TATTGAAATGCCATCTAAATATGTTAGCTGTAGATAGGAGGTGCTTCTGGTGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015903.12 |
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| CDS-3UTR CCA 90 bp | CTGGATAGAATCCCTTCATTGGTGGCGTTTTGCATGCACTTAACTGGACCGATTATATACCTCCAAATATaGTATGCCAAAAGGGGCATA | + |
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Preference number: 4 (lower is better) Translates to: LDRIPSLVAFCMHLTGPIIYLQI*YAKRGI Trigger: TATGCCCCTTTTGGCATACCATATTTGGAGGTATAT...AATCGGTCCAGTTAAGTGCATGCAAAACGCCACCAATGAAGGGATTCTATCCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000015903.12 ENSMUST00000146629.3 |
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| CDS-3UTR CCA 90 bp | AGAAGCACCTCCTATCTACAGCTAACATATTTAGATGGCATTTCAATAAAACCAATATACCTCCAAATATaGTATGCCAAAAGGGGCATA | + |
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Preference number: 4 (lower is better) Translates to: RSTSYLQLTYLDGISIKPIYLQI*YAKRGI Trigger: TATGCCCCTTTTGGCATACCATATTTGGAGGTATAT...TGGTTTTATTGAAATGCCATCTAAATATGTTAGCTGTAGATAGGAGGTGCTTCT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000015903.12 |
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| CDS TCA 90 bp | TGCACCATCCTTCCTTCTGACAGTAGGCTAGAATGTCTGCATTCATaGTGGTCGTCGGGTCATAGAGGCCAGGGCCGCTCATCACTGGTC | + |
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Preference number: 5 (lower is better) Translates to: CTILPSDSRLECLHS*WSSGHRGQGRSSLV Trigger: GACCAGTGATGAGCGGCCCTGGCCTCTATGACCCGACGACCATCATGAATGCAGACATTCTAGCCTACTGTCAGAAGGAAGGATGGTGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015903.12 ENSMUST00000146629.3 |
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| CDS CCA 90 bp | GTCAGCCACTCTGCCGCACAGAGAAACATGACACAGAAGAACGCGTaGATGAGGTACTCTGGAAGGACAAGAGGGTTCAGGGTATTGCAC | + |
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Preference number: 5 (lower is better) Translates to: VSHSAAQRNMTQKNA*MRYSGRTRGFRVLH Trigger: GTGCAATACCCTGAACCCTCTTGTCCTTCCAGAGTACCTCATCCACGCGTTCTTCTGTGTCATGTTTCTCTGTGCGGCAGAGTGGCTGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015903.12 |
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| CDS-3UTR CAA 90 bp | GCTACTCTTGGAAACAGGACCTTGCTGGATAGAATCCCTTCATTGGTGGCGTTTGCCAAAAGGGGCATATaGAGGCCCAGGGTCAGCCAC | + |
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Preference number: 5 (lower is better) Translates to: ATLGNRTLLDRIPSLVAFAKRGI*RPRVSH Trigger: GTGGCTGACCCTGGGCCTCAATATGCCCCTTTTGGC...AAACGCCACCAATGAAGGGATTCTATCCAGCAAGGTCCTGTTTCCAAGAGTAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000015903.12 ENSMUST00000146629.3 |
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| CDS-3UTR CAA 90 bp | AGAATCCCTTCATTGGTGGCGTTTTGCATGCACTTAACTGGACCGATTCTTCTGGCCAAAAGGGGCATATaGAGGCCCAGGGTCAGCCAC | + |
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Preference number: 5 (lower is better) Translates to: RIPSLVAFCMHLTGPILLAKRGI*RPRVSH Trigger: GTGGCTGACCCTGGGCCTCAATATGCCCCTTTTGGC...CAGAAGAATCGGTCCAGTTAAGTGCATGCAAAACGCCACCAATGAAGGGATTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000015903.12 ENSMUST00000146629.3 |
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| CDS CCA 90 bp | GTCAGCCACTCTGCCGCACAGAGAAACATGACACAGAAGAACGCGTaGATGAGGTACTCTGGAAGGACAAGCTTTAGTGCAATTTTGACT | + |
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Preference number: 5 (lower is better) Translates to: VSHSAAQRNMTQKNA*MRYSGRTSFSAILT Trigger: AGTCAAAATTGCACTAAAGCTTGTCCTTCCAGAGTACCTCATCCACGCGTTCTTCTGTGTCATGTTTCTCTGTGCGGCAGAGTGGCTGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146629.3 |
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| CDS-3UTR CAA 90 bp | CTGATCAGATTCCATAGGCTACTCTTGGAAACAGGACCTTGCTGGATAGAATCCGTAGGGTTCAGGGTATaGCACTGGTCTATAGGGTTC | + |
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Preference number: 5 (lower is better) Translates to: LIRFHRLLLETGPCWIESVGFRV*HWSIGF Trigger: GAACCCTATAGACCAGTGCAATACCCTGAACCCTAC...GGATTCTATCCAGCAAGGTCCTGTTTCCAAGAGTAGCCTATGGAATCTGATCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146629.3 |
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| CDS-3UTR CAA 90 bp | GTCAGACACTTTCAGTTCACCAGAAGCACCTCCTATCTACAGCTAACATATTTAAGAGGGTTCAGGGTATaGCACTGGTCTATAGGGTTC | + |
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Preference number: 5 (lower is better) Translates to: VRHFQFTRSTSYLQLTYLRGFRV*HWSIGF Trigger: GAACCCTATAGACCAGTGCAATACCCTGAACCCTCT...TAAATATGTTAGCTGTAGATAGGAGGTGCTTCTGGTGAACTGAAAGTGTCTGAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015903.12 |
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| CDS TCA 72 bp | CTTCCTTCTGACAGTAGGCTAGAATGTCTGCATTCATaGTGGTCGTCGGGTCATAGAGGCCAGGGCCGCTCA | + |
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Preference number: 6 (lower is better) Translates to: LPSDSRLECLHS*WSSGHRGQGRS Trigger: TGAGCGGCCCTGGCCTCTATGACCCGACGACCATCATGAATGCAGACATTCTAGCCTACTGTCAGAAGGAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015903.12 ENSMUST00000146629.3 |
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| CDS CCA 72 bp | TCTGCCGCACAGAGAAACATGACACAGAAGAACGCGTaGATGAGGTACTCTGGAAGGACAAGAGGGTTCAGG | + |
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Preference number: 6 (lower is better) Translates to: SAAQRNMTQKNA*MRYSGRTRGFR Trigger: CCTGAACCCTCTTGTCCTTCCAGAGTACCTCATCCACGCGTTCTTCTGTGTCATGTTTCTCTGTGCGGCAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015903.12 |
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| CDS CCA 72 bp | GGTCGTCGGGTCATAGAGGCCAGGGCCGCTCATCACTaGTCTACTCATATACCTCCAAATATGGTATGCCAA | + |
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Preference number: 6 (lower is better) Translates to: GRRVIEARAAHH*STHIPPNMVCQ Trigger: TTGGCATACCATATTTGGAGGTATATGAGTAGACCAGTGATGAGCGGCCCTGGCCTCTATGACCCGACGACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015903.12 ENSMUST00000146629.3 |
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| CDS CCA 72 bp | TCTGCCGCACAGAGAAACATGACACAGAAGAACGCGTaGATGAGGTACTCTGGAAGGACAAGCTTTAGTGCA | + |
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Preference number: 6 (lower is better) Translates to: SAAQRNMTQKNA*MRYSGRTSFSA Trigger: TGCACTAAAGCTTGTCCTTCCAGAGTACCTCATCCACGCGTTCTTCTGTGTCATGTTTCTCTGTGCGGCAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146629.3 |
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