Pregenerated sensors for CNGA3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026114Ensembl transcript IDs: ENSMUST00000027288.10, ENSMUST00000191981.6, ENSMUST00000194195.6, ENSMUST00000195272.6
Found 98 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATCAGCTCCTGCCTCCAGCTTCCTGCCCAGTTTGAGTTCCTGCCCTaGCTTCCTTCAATGATGGACTATGATGTGGAGTGTAAGCCGAAA | + |
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Preference number: 1 (lower is better) Translates to: ISSCLQLPAQFEFLP*LPSMMDYDVECKPK Trigger: TTTCGGCTTACACTCCACATCATAGTCCATCATTGAAGGAAGTCAGGGCAGGAACTCAAACTGGGCAGGAAGCTGGAGGCAGGAGCTGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
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| 3UTR TCA 90 bp | ATAGATGGTTGTGAGCCACCTTGTGGTTGCTGGGAATTGAACTCATaGCCTCTGGAAGAGCAGCTAGTGCTCTTAACCACTGAGTTATCT | + |
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Preference number: 1 (lower is better) Translates to: IDGCEPPCGCWELNS*PLEEQLVLLTTELS Trigger: AGATAACTCAGTGGTTAAGAGCACTAGCTGCTCTTCCAGAGGTCATGAGTTCAATTCCCAGCAACCACAAGGTGGCTCACAACCATCTAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
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| 3UTR CCA 90 bp | ACTAACAACATTAGAATCATGTGCACATATGCTTATACACTGGGTTaGGAACTCTTCACGCTTTCCAAAGCCACAACCTTCGCCACCTCA | + |
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Preference number: 1 (lower is better) Translates to: TNNIRIMCTYAYTLG*ELFTLSKATTFATS Trigger: TGAGGTGGCGAAGGTTGTGGCTTTGGAAAGCGTGAAGAGTTCCCAACCCAGTGTATAAGCATATGTGCACATGATTCTAATGTTGTTAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
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| 3UTR GCA 90 bp | ACCTTCACCTCAATAAATATGGGAAGGACTACACGTTTGGATTTGTaGTGGTCGGATTTTTATGTCAACTTGACACAAGTTAGAGTCATC | + |
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Preference number: 1 (lower is better) Translates to: TFTSINMGRTTRLDL*WSDFYVNLTQVRVI Trigger: GATGACTCTAACTTGTGTCAAGTTGACATAAAAATCCGACCAGCACAAATCCAAACGTGTAGTCCTTCCCATATTTATTGAGGTGAAGGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
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| 3UTR-3UTR TCA 90 bp | AGCAAACCAGTAAGCAGCTCCCCTTTATGGCCTCTGCATCAGCTCCTGCCTCCATGCAACGCCCTCTCCTaGCCTCCGCCGACAACTGAA | + |
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Preference number: 2 (lower is better) Translates to: SKPVSSSPLWPLHQLLPPCNALS*PPPTTE Trigger: TTCAGTTGTCGGCGGAGGTCAGGAGAGGGCGTTGCA...TGGAGGCAGGAGCTGATGCAGAGGCCATAAAGGGGAGCTGCTTACTGGTTTGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
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| 3UTR-3UTR CCA 90 bp | CAGCTACTTGGAAGGCTGGCGAGGGGACAACACTTGGGCATGGGAGTTGAAGGCGCTTATACACTGGGTTaGGAACTCTTCACGCTTTCC | + |
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Preference number: 2 (lower is better) Translates to: QLLGRLARGQHLGMGVEGAYTLG*ELFTLS Trigger: GGAAAGCGTGAAGAGTTCCCAACCCAGTGTATAAGC...GCCTTCAACTCCCATGCCCAAGTGTTGTCCCCTCGCCAGCCTTCCAAGTAGCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
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| 3UTR-3UTR TCA 90 bp | ATACACTGGGTTGGGAACTCTTCACGCTTTCCAAAGCCACAACCTTCGCCACCTACCACTCCCAAAGGATaGGTAGCACTGAGGCGAAAC | + |
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Preference number: 2 (lower is better) Translates to: IHWVGNSSRFPKPQPSPPTTPKG*VALRRN Trigger: GTTTCGCCTCAGTGCTACTCATCCTTTGGGAGTGGT...AGGTGGCGAAGGTTGTGGCTTTGGAAAGCGTGAAGAGTTCCCAACCCAGTGTAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
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| 3UTR-3UTR TCA 90 bp | AATAGTAACCCTAATGAAGACAGGATCCCAGCACCCATGCTGGGTAGCTTACAATGGGGCCGACAGCCATaGGTCCCATTTCATAGGAGA | + |
|
Preference number: 2 (lower is better) Translates to: NSNPNEDRIPAPMLGSLQWGRQP*VPFHRR Trigger: TCTCCTATGAAATGGGACTCATGGCTGTCGGCCCCA...TTGTAAGCTACCCAGCATGGGTGCTGGGATCCTGTCTTCATTAGGGTTACTATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
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| 3UTR-3UTR CCA 90 bp | CTGGAAGAGCAGCTAGTGCTCTTAACCACTGAGTTATCTCACCAGCCCCGTAAGAAAACAAAACTTATCTaGGTTGGAAACAGTGGAGTG | + |
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Preference number: 2 (lower is better) Translates to: LEEQLVLLTTELSHQPRKKTKLI*VGNSGV Trigger: CACTCCACTGTTTCCAACCCAGATAAGTTTTGTTTT...CTTACGGGGCTGGTGAGATAACTCAGTGGTTAAGAGCACTAGCTGCTCTTCCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
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| 3UTR CAA 90 bp | CAGAGCAGGACCTTCACCTCAATAAATATGGGAAGGACTACACGTTaGGATTTGTGCTGGTCGGATTTTTATGTCAACTTGACACAAGTT | + |
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Preference number: 2 (lower is better) Translates to: QSRTFTSINMGRTTR*DLCWSDFYVNLTQV Trigger: AACTTGTGTCAAGTTGACATAAAAATCCGACCAGCACAAATCCAAACGTGTAGTCCTTCCCATATTTATTGAGGTGAAGGTCCTGCTCTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
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| 3UTR CAA 90 bp | AGGACCTTCACCTCAATAAATATGGGAAGGACTACACGTTTGGATTaGTGCTGGTCGGATTTTTATGTCAACTTGACACAAGTTAGAGTC | + |
|
Preference number: 2 (lower is better) Translates to: RTFTSINMGRTTRLD*CWSDFYVNLTQVRV Trigger: GACTCTAACTTGTGTCAAGTTGACATAAAAATCCGACCAGCACAAATCCAAACGTGTAGTCCTTCCCATATTTATTGAGGTGAAGGTCCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
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| 3UTR TCA 72 bp | AAGGCTGGCGAGGGGACAACACTTGGGCATGGGAGTTaGAGGCTGGACTGGGTAACAGAGCAGGACCTTCAC | + |
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Preference number: 3 (lower is better) Translates to: KAGEGTTLGHGS*RLDWVTEQDLH Trigger: GTGAAGGTCCTGCTCTGTTACCCAGTCCAGCCTTCAACTCCCATGCCCAAGTGTTGTCCCCTCGCCAGCCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
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| 3UTR CCA 72 bp | CCCAGCTACTTGGAAGGCTGGCGAGGGGACAACACTTaGGCATGGGAGTTGAAGGCTGGACTGGGTAACAGA | + |
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Preference number: 3 (lower is better) Translates to: PSYLEGWRGDNT*AWELKAGLGNR Trigger: TCTGTTACCCAGTCCAGCCTTCAACTCCCATGCCCAAGTGTTGTCCCCTCGCCAGCCTTCCAAGTAGCTGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
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| 3UTR TCA 72 bp | TGCCTCCAGCTTCCTGCCCAGTTTGAGTTCCTGCCCTaGCTTCCTTCAATGATGGACTATGATGTGGAGTGT | + |
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Preference number: 3 (lower is better) Translates to: CLQLPAQFEFLP*LPSMMDYDVEC Trigger: ACACTCCACATCATAGTCCATCATTGAAGGAAGTCAGGGCAGGAACTCAAACTGGGCAGGAAGCTGGAGGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
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| 3UTR GCA 72 bp | AAAACAAAACTTATCTGGGTTGGAAACAGTGGAGTGTaGCTGTGGTCCCAGCTACTTGGAAGGCTGGCGAGG | + |
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Preference number: 3 (lower is better) Translates to: KTKLIWVGNSGV*LWSQLLGRLAR Trigger: CCTCGCCAGCCTTCCAAGTAGCTGGGACCACAGGCACACTCCACTGTTTCCAACCCAGATAAGTTTTGTTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
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| 3UTR TCA 72 bp | TGTGAGCCACCTTGTGGTTGCTGGGAATTGAACTCATaGCCTCTGGAAGAGCAGCTAGTGCTCTTAACCACT | + |
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Preference number: 3 (lower is better) Translates to: CEPPCGCWELNS*PLEEQLVLLTT Trigger: AGTGGTTAAGAGCACTAGCTGCTCTTCCAGAGGTCATGAGTTCAATTCCCAGCAACCACAAGGTGGCTCACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
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| 3UTR CCA 72 bp | ATTAGAATCATGTGCACATATGCTTATACACTGGGTTaGGAACTCTTCACGCTTTCCAAAGCCACAACCTTC | + |
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Preference number: 3 (lower is better) Translates to: IRIMCTYAYTLG*ELFTLSKATTF Trigger: GAAGGTTGTGGCTTTGGAAAGCGTGAAGAGTTCCCAACCCAGTGTATAAGCATATGTGCACATGATTCTAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
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| 3UTR CCA 72 bp | ACAACATTAGAATCATGTGCACATATGCTTATACACTaGGTTGGGAACTCTTCACGCTTTCCAAAGCCACAA | + |
|
Preference number: 3 (lower is better) Translates to: TTLESCAHMLIH*VGNSSRFPKPQ Trigger: TTGTGGCTTTGGAAAGCGTGAAGAGTTCCCAACCCAGTGTATAAGCATATGTGCACATGATTCTAATGTTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
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| 3UTR GCA 72 bp | CCATATGCCAACATAACTAACAACATTAGAATCATGTaGACATATGCTTATACACTGGGTTGGGAACTCTTC | + |
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Preference number: 3 (lower is better) Translates to: PYANITNNIRIM*TYAYTLGWELF Trigger: GAAGAGTTCCCAACCCAGTGTATAAGCATATGTGCACATGATTCTAATGTTGTTAGTTATGTTGGCATATGG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
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| 3UTR GCA 72 bp | TCAATAAATATGGGAAGGACTACACGTTTGGATTTGTaGTGGTCGGATTTTTATGTCAACTTGACACAAGTT | + |
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Preference number: 3 (lower is better) Translates to: SINMGRTTRLDL*WSDFYVNLTQV Trigger: AACTTGTGTCAAGTTGACATAAAAATCCGACCAGCACAAATCCAAACGTGTAGTCCTTCCCATATTTATTGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
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| 3UTR CCA 72 bp | ATAAATATGGGAAGGACTACACGTTTGGATTTGTGCTaGTCGGATTTTTATGTCAACTTGACACAAGTTAGA | + |
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Preference number: 3 (lower is better) Translates to: INMGRTTRLDLC*SDFYVNLTQVR Trigger: TCTAACTTGTGTCAAGTTGACATAAAAATCCGACCAGCACAAATCCAAACGTGTAGTCCTTCCCATATTTAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
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| CDS-3UTR TCA 90 bp | CAGCTACTTGGAAGGCTGGCGAGGGGACAACACTTGGGCATGGGAGTTGAAGGCGGTCGGGGAGGGCTGTaGACACTGGGTGTTCACCTT | + |
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Preference number: 4 (lower is better) Translates to: QLLGRLARGQHLGMGVEGGRGGL*TLGVHL Trigger: AAGGTGAACACCCAGTGTTCACAGCCCTCCCCGACC...GCCTTCAACTCCCATGCCCAAGTGTTGTCCCCTCGCCAGCCTTCCAAGTAGCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
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| CDS-3UTR GCA 90 bp | CGAGGGGACAACACTTGGGCATGGGAGTTGAAGGCTGGACTGGGTAACAGAGCAGGTTGGGCTGGGCATTaGTTTCCCGGGTGGAGACTT | + |
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Preference number: 4 (lower is better) Translates to: RGDNTWAWELKAGLGNRAGWAGH*FPGWRL Trigger: AAGTCTCCACCCGGGAAAGCAATGCCCAGCCCAACC...TGCTCTGTTACCCAGTCCAGCCTTCAACTCCCATGCCCAAGTGTTGTCCCCTCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
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| 3UTR CAA 72 bp | GAAGGCTGGCGAGGGGACAACACTTGGGCATGGGAGTaGAAGGCTGGACTGGGTAACAGAGCAGGACCTTCA | + |
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Preference number: 4 (lower is better) Translates to: EGWRGDNTWAWE*KAGLGNRAGPS Trigger: TGAAGGTCCTGCTCTGTTACCCAGTCCAGCCTTCAACTCCCATGCCCAAGTGTTGTCCCCTCGCCAGCCTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
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| CDS-3UTR CCA 90 bp | CAGCTACTTGGAAGGCTGGCGAGGGGACAACACTTGGGCATGGGAGTTGAAGGCGGTAGTAGATGTTGCTaGAGGGGTCCACCACAATGG | + |
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Preference number: 4 (lower is better) Translates to: QLLGRLARGQHLGMGVEGGSRCC*RGPPQW Trigger: CCATTGTGGTGGACCCCTCCAGCAACATCTACTACC...GCCTTCAACTCCCATGCCCAAGTGTTGTCCCCTCGCCAGCCTTCCAAGTAGCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
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| CDS-3UTR GCA 90 bp | CAGCTACTTGGAAGGCTGGCGAGGGGACAACACTTGGGCATGGGAGTTGAAGGCGTTACCTTCCGGAACTaGATGTACTGCTTGACGGAG | + |
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Preference number: 4 (lower is better) Translates to: QLLGRLARGQHLGMGVEGVTFRN*MYCLTE Trigger: CTCCGTCAAGCAGTACATGCAGTTCCGGAAGGTAAC...GCCTTCAACTCCCATGCCCAAGTGTTGTCCCCTCGCCAGCCTTCCAAGTAGCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
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| CDS-3UTR CCA 90 bp | CACAGCAATAGTAACCCTAATGAAGACAGGATCCCAGCACCCATGCTGGGTAGCTCTCCTGGGTTGGGCTaGGCATTGCTTTCCCGGGTG | + |
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Preference number: 4 (lower is better) Translates to: HSNSNPNEDRIPAPMLGSSPGLG*ALLSRV Trigger: CACCCGGGAAAGCAATGCCCAGCCCAACCCAGGAGA...GCTACCCAGCATGGGTGCTGGGATCCTGTCTTCATTAGGGTTACTATTGCTGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
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| CDS-3UTR CCA 90 bp | ATACACTGGGTTGGGAACTCTTCACGCTTTCCAAAGCCACAACCTTCGCCACCTGCCTTCCCCTCCGTCTaGTGGCTTCTGTTCTCCTGG | + |
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Preference number: 4 (lower is better) Translates to: IHWVGNSSRFPKPQPSPPAFPSV*WLLFSW Trigger: CCAGGAGAACAGAAGCCACCAGACGGAGGGGAAGGC...AGGTGGCGAAGGTTGTGGCTTTGGAAAGCGTGAAGAGTTCCCAACCCAGTGTAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
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| CDS-3UTR CCA 90 bp | CACAGCAATAGTAACCCTAATGAAGACAGGATCCCAGCACCCATGCTGGGTAGCAGACTGGGAGCGCGATaGCAGTCAGCCAGCGGTAGT | + |
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Preference number: 4 (lower is better) Translates to: HSNSNPNEDRIPAPMLGSRLGAR*QSASGS Trigger: ACTACCGCTGGCTGACTGCCATCGCGCTCCCAGTCT...GCTACCCAGCATGGGTGCTGGGATCCTGTCTTCATTAGGGTTACTATTGCTGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
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| CDS-3UTR TCA 90 bp | AACCCTAATGAAGACAGGATCCCAGCACCCATGCTGGGTAGCTTACAACAGCAGAGTAGCCGATACTCCTaGTGTTGGCCGTCCTGCGGT | + |
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Preference number: 4 (lower is better) Translates to: NPNEDRIPAPMLGSLQQQSSRYS*CWPSCG Trigger: ACCGCAGGACGGCCAACATCAGGAGTATCGGCTACT...CTGCTGTTGTAAGCTACCCAGCATGGGTGCTGGGATCCTGTCTTCATTAGGGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
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| CDS-3UTR CCA 90 bp | CACAGCAATAGTAACCCTAATGAAGACAGGATCCCAGCACCCATGCTGGGTAGCAGGGGTCCACCACAATaGGCTCCTCCTTCCTGCCTT | + |
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Preference number: 4 (lower is better) Translates to: HSNSNPNEDRIPAPMLGSRGPPQ*APPSCL Trigger: AAGGCAGGAAGGAGGAGCCCATTGTGGTGGACCCCT...GCTACCCAGCATGGGTGCTGGGATCCTGTCTTCATTAGGGTTACTATTGCTGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
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| CDS-3UTR CCA 90 bp | GCAATAGTAACCCTAATGAAGACAGGATCCCAGCACCCATGCTGGGTAGCTTACGTGGGGTCTCACCAATaGTGGTCAGGGTCAGGGTGG | + |
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Preference number: 4 (lower is better) Translates to: AIVTLMKTGSQHPCWVAYVGSHQ*WSGSGW Trigger: CCACCCTGACCCTGACCACCATTGGTGAGACCCCAC...GTAAGCTACCCAGCATGGGTGCTGGGATCCTGTCTTCATTAGGGTTACTATTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
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| CDS-3UTR TCA 90 bp | CGAGGGGACAACACTTGGGCATGGGAGTTGAAGGCTGGACTGGGTAACAGAGCATGTCCGGGAGGTTTTTaGGCACTTCCTTTTCATCCA | + |
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Preference number: 4 (lower is better) Translates to: RGDNTWAWELKAGLGNRACPGGF*ALPFHP Trigger: TGGATGAAAAGGAAGTGCTCAAAAACCTCCCGGACA...TGCTCTGTTACCCAGTCCAGCCTTCAACTCCCATGCCCAAGTGTTGTCCCCTCG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
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| CDS-3UTR CCA 90 bp | GCAATAGTAACCCTAATGAAGACAGGATCCCAGCACCCATGCTGGGTAGCTTACCTGAGGACCACAAACTaGGTGACCCCGTCATCAGCC | + |
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Preference number: 4 (lower is better) Translates to: AIVTLMKTGSQHPCWVAYLRTTN*VTPSSA Trigger: GGCTGATGACGGGGTCACCCAGTTTGTGGTCCTCAG...GTAAGCTACCCAGCATGGGTGCTGGGATCCTGTCTTCATTAGGGTTACTATTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
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| CDS-3UTR TCA 90 bp | GCAATAGTAACCCTAATGAAGACAGGATCCCAGCACCCATGCTGGGTAGCTTACTGTCCAGGTGCACGTTaGTGGCGATCTCAGCCTTCA | + |
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Preference number: 4 (lower is better) Translates to: AIVTLMKTGSQHPCWVAYCPGAR*WRSQPS Trigger: TGAAGGCTGAGATCGCCATCAACGTGCACCTGGACA...GTAAGCTACCCAGCATGGGTGCTGGGATCCTGTCTTCATTAGGGTTACTATTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
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| CDS-3UTR GCA 90 bp | CACAGCAATAGTAACCCTAATGAAGACAGGATCCCAGCACCCATGCTGGGTAGCAGCGGTAGTAGATGTTaGTGGAGGGGTCCACCACAA | + |
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Preference number: 4 (lower is better) Translates to: HSNSNPNEDRIPAPMLGSSGSRC*WRGPPQ Trigger: TTGTGGTGGACCCCTCCAGCAACATCTACTACCGCT...GCTACCCAGCATGGGTGCTGGGATCCTGTCTTCATTAGGGTTACTATTGCTGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
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| CDS-3UTR GCA 90 bp | ATACACTGGGTTGGGAACTCTTCACGCTTTCCAAAGCCACAACCTTCGCCACCTTTCAGCGTGTCCAGGTaGACGTTGATGGCGATCTCA | + |
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Preference number: 4 (lower is better) Translates to: IHWVGNSSRFPKPQPSPPFSVSR*TLMAIS Trigger: TGAGATCGCCATCAACGTGCACCTGGACACGCTGAA...AGGTGGCGAAGGTTGTGGCTTTGGAAAGCGTGAAGAGTTCCCAACCCAGTGTAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
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| CDS-3UTR CCA 90 bp | AACCCTAATGAAGACAGGATCCCAGCACCCATGCTGGGTAGCTTACAACAGCAGACACGTTGGGGTAGTTaGTCCTTGTCTCTGTGCGGT | + |
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Preference number: 4 (lower is better) Translates to: NPNEDRIPAPMLGSLQQQTRWGS*SLSLCG Trigger: ACCGCACAGAGACAAGGACCAACTACCCCAACGTGT...CTGCTGTTGTAAGCTACCCAGCATGGGTGCTGGGATCCTGTCTTCATTAGGGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
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| CDS-3UTR TCA 90 bp | GCAATAGTAACCCTAATGAAGACAGGATCCCAGCACCCATGCTGGGTAGCTTACGTCCGCATTCTTTATTaGAAGTTGGGTCGGGGAGGG | + |
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Preference number: 4 (lower is better) Translates to: AIVTLMKTGSQHPCWVAYVRILY*KLGRGG Trigger: CCCTCCCCGACCCAACTTTCAATAAAGAATGCGGAC...GTAAGCTACCCAGCATGGGTGCTGGGATCCTGTCTTCATTAGGGTTACTATTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
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| CDS-3UTR TCA 90 bp | ACCCTAATGAAGACAGGATCCCAGCACCCATGCTGGGTAGCTTACAACAGCAGGCCACCAGGAAGTCGATaGCCACAAAGAGATACTCTT | + |
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Preference number: 4 (lower is better) Translates to: TLMKTGSQHPCWVAYNSRPPGSR*PQRDTL Trigger: AAGAGTATCTCTTTGTGGTCATCGACTTCCTGGTGG...CCTGCTGTTGTAAGCTACCCAGCATGGGTGCTGGGATCCTGTCTTCATTAGGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
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| CDS-3UTR CCA 90 bp | GCAATAGTAACCCTAATGAAGACAGGATCCCAGCACCCATGCTGGGTAGCTTACCGGCTTGGAGGTGTTTaGATAGACCCAGGAGTCTGT | + |
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Preference number: 4 (lower is better) Translates to: AIVTLMKTGSQHPCWVAYRLGGV*IDPGVC Trigger: ACAGACTCCTGGGTCTATCCAAACACCTCCAAGCCG...GTAAGCTACCCAGCATGGGTGCTGGGATCCTGTCTTCATTAGGGTTACTATTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
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| CDS-3UTR CCA 90 bp | CATTTCATAGGAGAGGAAACTAAGGCTCTTCCTTGCTGTCACACCACTCCCAAACACCTCCTGTTCATCTaGCTCTCCAGCCGAGTGAGC | + |
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Preference number: 4 (lower is better) Translates to: HFIGEETKALPCCHTTPKHLLFI*LSSRVS Trigger: GCTCACTCGGCTGGAGAGCCAGATGAACAGGAGGTG...TTTGGGAGTGGTGTGACAGCAAGGAAGAGCCTTAGTTTCCTCTCCTATGAAATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
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| CDS-3UTR TCA 90 bp | CAGAGCAGGACCTTCACCTCAATAAATATGGGAAGGACTACACGTTTGGATTTGCCAGGTCTGTGGGGATaGGAGACAGGATGTCCAGCT | + |
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Preference number: 4 (lower is better) Translates to: QSRTFTSINMGRTTRLDLPGLWG*ETGCPA Trigger: AGCTGGACATCCTGTCTCTCATCCCCACAGACCTGG...CAAATCCAAACGTGTAGTCCTTCCCATATTTATTGAGGTGAAGGTCCTGCTCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
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| CDS-3UTR TCA 90 bp | GTGCACATATGCTTATACACTGGGTTGGGAACTCTTCACGCTTTCCAAAGCCACACTTCAGGAGGCGGTTaGACCTCAGTTCTGGGTAGT | + |
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Preference number: 4 (lower is better) Translates to: VHICLYTGLGTLHAFQSHTSGGG*TSVLGS Trigger: ACTACCCAGAACTGAGGTTCAACCGCCTCCTGAAGT...GTGGCTTTGGAAAGCGTGAAGAGTTCCCAACCCAGTGTATAAGCATATGTGCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
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| CDS-3UTR TCA 90 bp | CATTTCATAGGAGAGGAAACTAAGGCTCTTCCTTGCTGTCACACCACTCCCAAACGTCTGGGTACTCGGTaGGGGCTTCCATTAGGTCAT | + |
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Preference number: 4 (lower is better) Translates to: HFIGEETKALPCCHTTPKRLGTR*GLPLGH Trigger: ATGACCTAATGGAAGCCCTCACCGAGTACCCAGACG...TTTGGGAGTGGTGTGACAGCAAGGAAGAGCCTTAGTTTCCTCTCCTATGAAATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
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| CDS-3UTR CCA 90 bp | CATTTCATAGGAGAGGAAACTAAGGCTCTTCCTTGCTGTCACACCACTCCCAAATTCCCCTCCGTCTGGTaGCTTCTGTTCTCCTGGGTT | + |
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Preference number: 4 (lower is better) Translates to: HFIGEETKALPCCHTTPKFPSVW*LLFSWV Trigger: AACCCAGGAGAACAGAAGCCACCAGACGGAGGGGAA...TTTGGGAGTGGTGTGACAGCAAGGAAGAGCCTTAGTTTCCTCTCCTATGAAATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
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| CDS-3UTR CCA 90 bp | CTGGAAGAGCAGCTAGTGCTCTTAACCACTGAGTTATCTCACCAGCCCCGTAAGGTTGAACCTCAGTTCTaGGTAGTTCACGCCCAACTT | + |
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Preference number: 4 (lower is better) Translates to: LEEQLVLLTTELSHQPRKVEPQF*VVHAQL Trigger: AAGTTGGGCGTGAACTACCCAGAACTGAGGTTCAAC...CTTACGGGGCTGGTGAGATAACTCAGTGGTTAAGAGCACTAGCTGCTCTTCCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
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| CDS-3UTR CCA 90 bp | GCAATAGTAACCCTAATGAAGACAGGATCCCAGCACCCATGCTGGGTAGCTTACGGGGAGCGTTCATGTTaGAAATCATGGAGCCTACGT | + |
|
Preference number: 4 (lower is better) Translates to: AIVTLMKTGSQHPCWVAYGERSC*KSWSLR Trigger: ACGTAGGCTCCATGATTTCCAACATGAACGCTCCCC...GTAAGCTACCCAGCATGGGTGCTGGGATCCTGTCTTCATTAGGGTTACTATTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
||
| CDS-3UTR CCA 90 bp | CAGAGCAGGACCTTCACCTCAATAAATATGGGAAGGACTACACGTTTGGATTTGGAGTCGATCTTAGCCTaGAACTCTACCCGGGGAGCG | + |
|
Preference number: 4 (lower is better) Translates to: QSRTFTSINMGRTTRLDLESILA*NSTRGA Trigger: CGCTCCCCGGGTAGAGTTCCAGGCTAAGATCGACTC...CAAATCCAAACGTGTAGTCCTTCCCATATTTATTGAGGTGAAGGTCCTGCTCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
||
| CDS-3UTR CCA 90 bp | CAGAGCAGGACCTTCACCTCAATAAATATGGGAAGGACTACACGTTTGGATTTGAGCCCTCTTAGCGTCTaGGTACTCGGTGAGGGCTTC | + |
|
Preference number: 4 (lower is better) Translates to: QSRTFTSINMGRTTRLDLSPLSV*VLGEGF Trigger: GAAGCCCTCACCGAGTACCCAGACGCTAAGAGGGCT...CAAATCCAAACGTGTAGTCCTTCCCATATTTATTGAGGTGAAGGTCCTGCTCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
||
| CDS-3UTR TCA 90 bp | GTGCACATATGCTTATACACTGGGTTGGGAACTCTTCACGCTTTCCAAAGCCACGCCTCTTGGTATCTCTaGCCATTAGGCCTTGCTCAA | + |
|
Preference number: 4 (lower is better) Translates to: VHICLYTGLGTLHAFQSHASWYL*PLGLAQ Trigger: TTGAGCAAGGCCTAATGGTCAGAGATACCAAGAGGC...GTGGCTTTGGAAAGCGTGAAGAGTTCCCAACCCAGTGTATAAGCATATGTGCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
||
| CDS-3UTR CCA 90 bp | CATTTCATAGGAGAGGAAACTAAGGCTCTTCCTTGCTGTCACACCACTCCCAAACCAGTTATAGAAGACTaGGAGCGCGATGGCAGTCAG | + |
|
Preference number: 4 (lower is better) Translates to: HFIGEETKALPCCHTTPKPVIED*ERDGSQ Trigger: CTGACTGCCATCGCGCTCCCAGTCTTCTATAACTGG...TTTGGGAGTGGTGTGACAGCAAGGAAGAGCCTTAGTTTCCTCTCCTATGAAATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
||
| CDS-3UTR CCA 90 bp | GTGCACATATGCTTATACACTGGGTTGGGAACTCTTCACGCTTTCCAAAGCCACGAGTCTCCAAGTCCTTaGTTACCTTCCGGAACTGCA | + |
|
Preference number: 4 (lower is better) Translates to: VHICLYTGLGTLHAFQSHESPSP*LPSGTA Trigger: TGCAGTTCCGGAAGGTAACCAAGGACTTGGAGACTC...GTGGCTTTGGAAAGCGTGAAGAGTTCCCAACCCAGTGTATAAGCATATGTGCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
||
| CDS-3UTR CCA 90 bp | CAGAGCAGGACCTTCACCTCAATAAATATGGGAAGGACTACACGTTTGGATTTGCCACCGTCTTCCTGTTaGCCCACAGATAGTCAAACC | + |
|
Preference number: 4 (lower is better) Translates to: QSRTFTSINMGRTTRLDLPPSSC*PTDSQT Trigger: GGTTTGACTATCTGTGGGCCAACAGGAAGACGGTGG...CAAATCCAAACGTGTAGTCCTTCCCATATTTATTGAGGTGAAGGTCCTGCTCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
||
| CDS-3UTR CCA 90 bp | AATAGTAACCCTAATGAAGACAGGATCCCAGCACCCATGCTGGGTAGCTTACAATGTTTCAGCTTCATCTaGGAGGCACTGTACTCAGCC | + |
|
Preference number: 4 (lower is better) Translates to: NSNPNEDRIPAPMLGSLQCFSFI*EALYSA Trigger: GGCTGAGTACAGTGCCTCCCAGATGAAGCTGAAACA...TTGTAAGCTACCCAGCATGGGTGCTGGGATCCTGTCTTCATTAGGGTTACTATT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
||
| CDS-3UTR GCA 90 bp | GTGCACATATGCTTATACACTGGGTTGGGAACTCTTCACGCTTTCCAAAGCCACAACATAAAGGACATCTaGAGAGTAGTCCAAGACCAG | + |
|
Preference number: 4 (lower is better) Translates to: VHICLYTGLGTLHAFQSHNIKDI*RVVQDQ Trigger: CTGGTCTTGGACTACTCTGCAGATGTCCTTTATGTT...GTGGCTTTGGAAAGCGTGAAGAGTTCCCAACCCAGTGTATAAGCATATGTGCAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
||
| CDS-3UTR CCA 90 bp | CAGAGCAGGACCTTCACCTCAATAAATATGGGAAGGACTACACGTTTGGATTTGTCATGTTGGAAATCATaGAGCCTACGTTGCCCACTA | + |
|
Preference number: 4 (lower is better) Translates to: QSRTFTSINMGRTTRLDLSCWKS*SLRCPL Trigger: TAGTGGGCAACGTAGGCTCCATGATTTCCAACATGA...CAAATCCAAACGTGTAGTCCTTCCCATATTTATTGAGGTGAAGGTCCTGCTCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
||
| CDS-3UTR GCA 90 bp | ATTAGAATCATGTGCACATATGCTTATACACTGGGTTGGGAACTCTTCACGCTTTGGTCCTTGTCTCTGTaGGGTCAAAGAATTCAAAGA | + |
|
Preference number: 4 (lower is better) Translates to: IRIMCTYAYTLGWELFTLWSLSL*GQRIQR Trigger: TCTTTGAATTCTTTGACCGCACAGAGACAAGGACCA...AAGCGTGAAGAGTTCCCAACCCAGTGTATAAGCATATGTGCACATGATTCTAAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
||
| CDS CCA 90 bp | ATCCAGCCAGTCCTCGGGTCTCCATGGCGATCCCTTGCTGCAGTGTaGAAGATGTCTCCTCACATGGTGAGTGAGACCTGCCCAGGCCGT | + |
|
Preference number: 5 (lower is better) Translates to: IQPVLGSPWRSLAAV*KMSPHMVSETCPGR Trigger: ACGGCCTGGGCAGGTCTCACTCACCATGTGAGGAGACATCTTCCACACTGCAGCAAGGGATCGCCATGGAGACCCGAGGACTGGCTGGAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000191981.6 ENSMUST00000195272.6 |
||
| CDS TCA 90 bp | GCGATCCCTTGCTGCAGTGTGGAAGATGTCTCCTCACATGGTGAGTaGGACCTGCCCAGGCCGTTCTCTACGTGGTCGAGATCTCTGTCC | + |
|
Preference number: 5 (lower is better) Translates to: AIPCCSVEDVSSHGE*DLPRPFSTWSRSLS Trigger: GGACAGAGATCTCGACCACGTAGAGAACGGCCTGGGCAGGTCTCACTCACCATGTGAGGAGACATCTTCCACACTGCAGCAAGGGATCGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000191981.6 ENSMUST00000195272.6 |
||
| CDS TCA 90 bp | CATGGCGATCCCTTGCTGCAGTGTGGAAGATGTCTCCTCACATGGTaGGTGAGACCTGCCCAGGCCGTTCTCTACGTGGTCGAGATCTCT | + |
|
Preference number: 5 (lower is better) Translates to: HGDPLLQCGRCLLTW*VRPAQAVLYVVEIS Trigger: AGAGATCTCGACCACGTAGAGAACGGCCTGGGCAGGTCTCACTCACCATGTGAGGAGACATCTTCCACACTGCAGCAAGGGATCGCCATG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000191981.6 ENSMUST00000195272.6 |
||
| CDS CCA 90 bp | CCCTGCATACAAGTAGACACCAGTTATAGAAGACTGGGAGCGCGATaGCAGTCAGCCAGCGGTAGTAGATGTTGCTGGAGGGGTCCACCA | + |
|
Preference number: 5 (lower is better) Translates to: PCIQVDTSYRRLGAR*QSASGSRCCWRGPP Trigger: TGGTGGACCCCTCCAGCAACATCTACTACCGCTGGCTGACTGCCATCGCGCTCCCAGTCTTCTATAACTGGTGTCTACTTGTATGCAGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027288.10 ENSMUST00000194195.6 ENSMUST00000195272.6 |
||
| CDS-3UTR CAA 90 bp | CTGGAAGAGCAGCTAGTGCTCTTAACCACTGAGTTATCTCACCAGCCCCGTAAGCCGGCTTGGAGGTGTTaGGATAGACCCAGGAGTCTG | + |
|
Preference number: 5 (lower is better) Translates to: LEEQLVLLTTELSHQPRKPAWRC*DRPRSL Trigger: CAGACTCCTGGGTCTATCCAAACACCTCCAAGCCGG...CTTACGGGGCTGGTGAGATAACTCAGTGGTTAAGAGCACTAGCTGCTCTTCCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
||
| CDS-3UTR CAA 90 bp | CTGGAAGAGCAGCTAGTGCTCTTAACCACTGAGTTATCTCACCAGCCCCGTAAGCGGGGAGCGTTCATGTaGGAAATCATGGAGCCTACG | + |
|
Preference number: 5 (lower is better) Translates to: LEEQLVLLTTELSHQPRKRGAFM*EIMEPT Trigger: CGTAGGCTCCATGATTTCCAACATGAACGCTCCCCG...CTTACGGGGCTGGTGAGATAACTCAGTGGTTAAGAGCACTAGCTGCTCTTCCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
||
| CDS TCA 90 bp | AGTGCAAGGTCTTTGTGTAATGTTTCCACAGCCTCTTGGTATCTCTaGCCATTAGGCCTTGCTCAAGGAAACCTGTCCGGGCTCGAACCA | + |
|
Preference number: 5 (lower is better) Translates to: SARSLCNVSTASWYL*PLGLAQGNLSGLEP Trigger: TGGTTCGAGCCCGGACAGGTTTCCTTGAGCAAGGCCTAATGGTCAGAGATACCAAGAGGCTGTGGAAACATTACACAAAGACCTTGCACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027288.10 ENSMUST00000194195.6 ENSMUST00000195272.6 |
||
| CDS-3UTR CAA 90 bp | AATAGTAACCCTAATGAAGACAGGATCCCAGCACCCATGCTGGGTAGCTTACAATTCTGTTCTCCTGGGTaGGGCTGGGCATTGCTTTCC | + |
|
Preference number: 5 (lower is better) Translates to: NSNPNEDRIPAPMLGSLQFCSPG*GWALLS Trigger: GGAAAGCAATGCCCAGCCCAACCCAGGAGAACAGAA...TTGTAAGCTACCCAGCATGGGTGCTGGGATCCTGTCTTCATTAGGGTTACTATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
||
| CDS-3UTR CAA 90 bp | CTGGAAGAGCAGCTAGTGCTCTTAACCACTGAGTTATCTCACCAGCCCCGTAAGTGTTTCCACAGCCTCTaGGTATCTCTGACCATTAGG | + |
|
Preference number: 5 (lower is better) Translates to: LEEQLVLLTTELSHQPRKCFHSL*VSLTIR Trigger: CCTAATGGTCAGAGATACCAAGAGGCTGTGGAAACA...CTTACGGGGCTGGTGAGATAACTCAGTGGTTAAGAGCACTAGCTGCTCTTCCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
||
| CDS TCA 90 bp | TGGGCATTGCTTTCCCGGGTGGAGACTTCCTTAAGCTCAGATCCATaGAATCGATCCAAAAAGGAGTCAGGTGTCTGGTCTTCATCGTGT | + |
|
Preference number: 5 (lower is better) Translates to: WALLSRVETSLSSDP*NRSKKESGVWSSSC Trigger: ACACGATGAAGACCAGACACCTGACTCCTTTTTGGATCGATTTCATGGATCTGAGCTTAAGGAAGTCTCCACCCGGGAAAGCAATGCCCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000027288.10 ENSMUST00000194195.6 ENSMUST00000195272.6 |
||
| CDS CCA 90 bp | AATGTACTTCCGGGAGAGTCGTGCATACTCCGGCTTGGAGGTGTTTaGATAGACCCAGGAGTCTGTCCCAAAACCAATGAACTTGGAAAT | + |
|
Preference number: 5 (lower is better) Translates to: NVLPGESCILRLGGV*IDPGVCPKTNELGN Trigger: ATTTCCAAGTTCATTGGTTTTGGGACAGACTCCTGGGTCTATCCAAACACCTCCAAGCCGGAGTATGCACGACTCTCCCGGAAGTACATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027288.10 ENSMUST00000194195.6 ENSMUST00000195272.6 |
||
| CDS-3UTR CAA 90 bp | GTGCACATATGCTTATACACTGGGTTGGGAACTCTTCACGCTTTCCAAAGCCACTGTCCGCATTCTTTATaGAAAGTTGGGTCGGGGAGG | + |
|
Preference number: 5 (lower is better) Translates to: VHICLYTGLGTLHAFQSHCPHSL*KVGSGR Trigger: CCTCCCCGACCCAACTTTCAATAAAGAATGCGGACA...GTGGCTTTGGAAAGCGTGAAGAGTTCCCAACCCAGTGTATAAGCATATGTGCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
||
| CDS-3UTR CAA 90 bp | CAGAGCAGGACCTTCACCTCAATAAATATGGGAAGGACTACACGTTTGGATTTGCGAGTCTCCAAGTCCTaGGTTACCTTCCGGAACTGC | + |
|
Preference number: 5 (lower is better) Translates to: QSRTFTSINMGRTTRLDLRVSKS*VTFRNC Trigger: GCAGTTCCGGAAGGTAACCAAGGACTTGGAGACTCG...CAAATCCAAACGTGTAGTCCTTCCCATATTTATTGAGGTGAAGGTCCTGCTCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
||
| CDS-3UTR CAA 90 bp | ATTAGAATCATGTGCACATATGCTTATACACTGGGTTGGGAACTCTTCACGCTTCCGATACTCCTGATGTaGGCCGTCCTGCGGTTCCCA | + |
|
Preference number: 5 (lower is better) Translates to: IRIMCTYAYTLGWELFTLPILLM*AVLRFP Trigger: TGGGAACCGCAGGACGGCCAACATCAGGAGTATCGG...AAGCGTGAAGAGTTCCCAACCCAGTGTATAAGCATATGTGCACATGATTCTAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
||
| CDS TCA 90 bp | TGCGGTCAAAGAATTCAAAGAGCCGAGAGAACTTCAGGAGGCGGTTaGACCTCAGTTCTGGGTAGTTCACGCCCAACTTTAAATAAGCCA | + |
|
Preference number: 5 (lower is better) Translates to: CGQRIQRAERTSGGG*TSVLGSSRPTLNKP Trigger: TGGCTTATTTAAAGTTGGGCGTGAACTACCCAGAACTGAGGTTCAACCGCCTCCTGAAGTTCTCTCGGCTCTTTGAATTCTTTGACCGCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027288.10 ENSMUST00000194195.6 ENSMUST00000195272.6 |
||
| CDS-3UTR CAA 90 bp | CAGAGCAGGACCTTCACCTCAATAAATATGGGAAGGACTACACGTTTGGATTTGATCTCAGCCTTCAGCTaGTCCGGGAGGTTTTTGAGC | + |
|
Preference number: 5 (lower is better) Translates to: QSRTFTSINMGRTTRLDLISAFS*SGRFLS Trigger: GCTCAAAAACCTCCCGGACAAGCTGAAGGCTGAGAT...CAAATCCAAACGTGTAGTCCTTCCCATATTTATTGAGGTGAAGGTCCTGCTCTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
||
| CDS-3UTR CAA 90 bp | CAGAGCAGGACCTTCACCTCAATAAATATGGGAAGGACTACACGTTTGGATTTGCTGCGGTTCCCAGACTaGCTCCCCTTAATGTTTAAG | + |
|
Preference number: 5 (lower is better) Translates to: QSRTFTSINMGRTTRLDLLRFPD*LPLMFK Trigger: CTTAAACATTAAGGGGAGCAAGTCTGGGAACCGCAG...CAAATCCAAACGTGTAGTCCTTCCCATATTTATTGAGGTGAAGGTCCTGCTCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027288.10 |
||
| CDS GCA 72 bp | CACCCTGGCTGGTCCCTGGCTTGTGACTACGCTCCGTaGGGATCCAGCCAGTCCTCGGGTCTCCATGGCGAT | + |
|
Preference number: 6 (lower is better) Translates to: HPGWSLACDYAP*GSSQSSGLHGD Trigger: ATCGCCATGGAGACCCGAGGACTGGCTGGATCCGCACGGAGCGTAGTCACAAGCCAGGGACCAGCCAGGGTG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000195272.6 |
||
| CDS GCA 72 bp | GGAGCGCGATGGCAGTCAGCCAGCGGTAGTAGATGTTaGTGGAGGGGTCCACCACAATGGGCTCCTCCTTCC | + |
|
Preference number: 6 (lower is better) Translates to: GARWQSASGSRC*WRGPPQWAPPS Trigger: GGAAGGAGGAGCCCATTGTGGTGGACCCCTCCAGCAACATCTACTACCGCTGGCTGACTGCCATCGCGCTCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027288.10 ENSMUST00000194195.6 ENSMUST00000195272.6 |
||
| CDS CCA 72 bp | GCGCGATGGCAGTCAGCCAGCGGTAGTAGATGTTGCTaGAGGGGTCCACCACAATGGGCTCCTCCTTCCTGC | + |
|
Preference number: 6 (lower is better) Translates to: ARWQSASGSRCC*RGPPQWAPPSC Trigger: GCAGGAAGGAGGAGCCCATTGTGGTGGACCCCTCCAGCAACATCTACTACCGCTGGCTGACTGCCATCGCGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027288.10 ENSMUST00000194195.6 ENSMUST00000195272.6 |
||
| CDS CCA 72 bp | CGCTCCGTGCGGATCCAGCCAGTCCTCGGGTCTCCATaGCGATCCCTTGCTGCAGTGTGGAAGATGTCTCCT | + |
|
Preference number: 6 (lower is better) Translates to: RSVRIQPVLGSP*RSLAAVWKMSP Trigger: AGGAGACATCTTCCACACTGCAGCAAGGGATCGCCATGGAGACCCGAGGACTGGCTGGATCCGCACGGAGCG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000191981.6 ENSMUST00000195272.6 |
||
| CDS TCA 72 bp | CCCTTGCTGCAGTGTGGAAGATGTCTCCTCACATGGTaGGTGAGACCTGCCCAGGCCGTTCTCTACGTGGTC | + |
|
Preference number: 6 (lower is better) Translates to: PLLQCGRCLLTW*VRPAQAVLYVV Trigger: GACCACGTAGAGAACGGCCTGGGCAGGTCTCACTCACCATGTGAGGAGACATCTTCCACACTGCAGCAAGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000191981.6 ENSMUST00000195272.6 |
||
| CDS GCA 72 bp | GATCCAGCCAGTCCTCGGGTCTCCATGGCGATCCCTTaGTGCAGTGTGGAAGATGTCTCCTCACATGGTGAG | + |
|
Preference number: 6 (lower is better) Translates to: DPASPRVSMAIP*CSVEDVSSHGE Trigger: CTCACCATGTGAGGAGACATCTTCCACACTGCAGCAAGGGATCGCCATGGAGACCCGAGGACTGGCTGGATC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000191981.6 ENSMUST00000195272.6 |
||
| CDS CCA 72 bp | GTCCTCGGGTCTCCATGGCGATCCCTTGCTGCAGTGTaGAAGATGTCTCCTCACATGGTGAGTGAGACCTGC | + |
|
Preference number: 6 (lower is better) Translates to: VLGSPWRSLAAV*KMSPHMVSETC Trigger: GCAGGTCTCACTCACCATGTGAGGAGACATCTTCCACACTGCAGCAAGGGATCGCCATGGAGACCCGAGGAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000191981.6 ENSMUST00000195272.6 |
||
| CDS TCA 72 bp | CACAACACCTCCTGTTCATCTGGCTCTCCAGCCGAGTaGGCCGCTGTTTCAGCTTCATCTGGGAGGCACTGT | + |
|
Preference number: 6 (lower is better) Translates to: HNTSCSSGSPAE*AAVSASSGRHC Trigger: ACAGTGCCTCCCAGATGAAGCTGAAACAGCGGCTCACTCGGCTGGAGAGCCAGATGAACAGGAGGTGTTGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027288.10 ENSMUST00000194195.6 ENSMUST00000195272.6 |
||
| CDS TCA 72 bp | TGCTGCAGTGTGGAAGATGTCTCCTCACATGGTGAGTaGGACCTGCCCAGGCCGTTCTCTACGTGGTCGAGA | + |
|
Preference number: 6 (lower is better) Translates to: CCSVEDVSSHGE*DLPRPFSTWSR Trigger: TCTCGACCACGTAGAGAACGGCCTGGGCAGGTCTCACTCACCATGTGAGGAGACATCTTCCACACTGCAGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000191981.6 ENSMUST00000195272.6 |
||
| CDS CCA 72 bp | ACGACTCCAGGTACTCCACCTTCTCCTCAACGTCCCTaGTATCTACCCTGGCCGCGACTAGGTCCTCATCAA | + |
|
Preference number: 6 (lower is better) Translates to: TTPGTPPSPQRP*YLPWPRLGPHQ Trigger: TTGATGAGGACCTAGTCGCGGCCAGGGTAGATACCAGGGACGTTGAGGAGAAGGTGGAGTACCTGGAGTCGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027288.10 ENSMUST00000194195.6 ENSMUST00000195272.6 |
||
| CDS CCA 72 bp | CTGTCAGGTGAGAAGCCACAACACCTCCTGTTCATCTaGCTCTCCAGCCGAGTGAGCCGCTGTTTCAGCTTC | + |
|
Preference number: 6 (lower is better) Translates to: LSGEKPQHLLFI*LSSRVSRCFSF Trigger: GAAGCTGAAACAGCGGCTCACTCGGCTGGAGAGCCAGATGAACAGGAGGTGTTGTGGCTTCTCACCTGACAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027288.10 ENSMUST00000194195.6 ENSMUST00000195272.6 |
||
| CDS GCA 72 bp | TTCCACAGCCTCTTGGTATCTCTGACCATTAGGCCTTaGTCAAGGAAACCTGTCCGGGCTCGAACCAGCATG | + |
|
Preference number: 6 (lower is better) Translates to: FHSLLVSLTIRP*SRKPVRARTSM Trigger: CATGCTGGTTCGAGCCCGGACAGGTTTCCTTGAGCAAGGCCTAATGGTCAGAGATACCAAGAGGCTGTGGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027288.10 ENSMUST00000194195.6 ENSMUST00000195272.6 |
||
| CDS CCA 72 bp | CAAGTAGACACCAGTTATAGAAGACTGGGAGCGCGATaGCAGTCAGCCAGCGGTAGTAGATGTTGCTGGAGG | + |
|
Preference number: 6 (lower is better) Translates to: QVDTSYRRLGAR*QSASGSRCCWR Trigger: CCTCCAGCAACATCTACTACCGCTGGCTGACTGCCATCGCGCTCCCAGTCTTCTATAACTGGTGTCTACTTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027288.10 ENSMUST00000194195.6 ENSMUST00000195272.6 |
||
| CDS CCA 72 bp | CCGGGAGAGTCGTGCATACTCCGGCTTGGAGGTGTTTaGATAGACCCAGGAGTCTGTCCCAAAACCAATGAA | + |
|
Preference number: 6 (lower is better) Translates to: PGESCILRLGGV*IDPGVCPKTNE Trigger: TTCATTGGTTTTGGGACAGACTCCTGGGTCTATCCAAACACCTCCAAGCCGGAGTATGCACGACTCTCCCGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027288.10 ENSMUST00000194195.6 ENSMUST00000195272.6 |
||
| CDS CAA 90 bp | TTCAGCGTGTCCAGGTGCACGTTGATGGCGATCTCAGCCTTCAGCTaGTCCGGGAGGTTTTTGAGCACTTCCTTTTCATCCACCGTCTTC | + |
|
Preference number: 6 (lower is better) Translates to: FSVSRCTLMAISAFS*SGRFLSTSFSSTVF Trigger: GAAGACGGTGGATGAAAAGGAAGTGCTCAAAAACCTCCCGGACAAGCTGAAGGCTGAGATCGCCATCAACGTGCACCTGGACACGCTGAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000027288.10 ENSMUST00000194195.6 ENSMUST00000195272.6 |
||
| CDS CCA 72 bp | TGGTCGAGATCTCTGTCCGCATTCTTTATTGAAAGTTaGGTCGGGGAGGGCTGTGAACACTGGGTGTTCACC | + |
|
Preference number: 6 (lower is better) Translates to: WSRSLSAFFIES*VGEGCEHWVFT Trigger: GGTGAACACCCAGTGTTCACAGCCCTCCCCGACCCAACTTTCAATAAAGAATGCGGACAGAGATCTCGACCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000027288.10 ENSMUST00000191981.6 ENSMUST00000194195.6 ENSMUST00000195272.6 |
||
| CDS CCA 72 bp | ATGAGGCGTGACACCCTGCCCAGGCCGTTCTCTACGTaGTCGAGATCTCTGTCCGCATTCTTTATTGAAAGT | + |
|
Preference number: 6 (lower is better) Translates to: MRRDTLPRPFST*SRSLSAFFIES Trigger: ACTTTCAATAAAGAATGCGGACAGAGATCTCGACCACGTAGAGAACGGCCTGGGCAGGGTGTCACGCCTCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027288.10 ENSMUST00000194195.6 |
||
| CDS CCA 72 bp | AAATGTACTTCCGGGAGAGTCGTGCATACTCCGGCTTaGAGGTGTTTGGATAGACCCAGGAGTCTGTCCCAA | + |
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Preference number: 6 (lower is better) Translates to: KCTSGRVVHTPA*RCLDRPRSLSQ Trigger: TTGGGACAGACTCCTGGGTCTATCCAAACACCTCCAAGCCGGAGTATGCACGACTCTCCCGGAAGTACATTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027288.10 ENSMUST00000194195.6 ENSMUST00000195272.6 |
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| CDS CAA 72 bp | TCTCTACGTGGTCGAGATCTCTGTCCGCATTCTTTATaGAAAGTTGGGTCGGGGAGGGCTGTGAACACTGGG | + |
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Preference number: 6 (lower is better) Translates to: SLRGRDLCPHSL*KVGSGRAVNTG Trigger: CCCAGTGTTCACAGCCCTCCCCGACCCAACTTTCAATAAAGAATGCGGACAGAGATCTCGACCACGTAGAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000027288.10 ENSMUST00000191981.6 ENSMUST00000194195.6 ENSMUST00000195272.6 |
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| CDS GCA 72 bp | CCAGTAGAGACTGTAAATGTACTTCCGGGAGAGTCGTaGATACTCCGGCTTGGAGGTGTTTGGATAGACCCA | + |
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Preference number: 6 (lower is better) Translates to: PVETVNVLPGES*ILRLGGVWIDP Trigger: TGGGTCTATCCAAACACCTCCAAGCCGGAGTATGCACGACTCTCCCGGAAGTACATTTACAGTCTCTACTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027288.10 ENSMUST00000194195.6 ENSMUST00000195272.6 |
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| CDS TCA 72 bp | CTTTCCCGGGTGGAGACTTCCTTAAGCTCAGATCCATaGAATCGATCCAAAAAGGAGTCAGGTGTCTGGTCT | + |
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Preference number: 6 (lower is better) Translates to: LSRVETSLSSDP*NRSKKESGVWS Trigger: AGACCAGACACCTGACTCCTTTTTGGATCGATTTCATGGATCTGAGCTTAAGGAAGTCTCCACCCGGGAAAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000027288.10 ENSMUST00000194195.6 ENSMUST00000195272.6 |
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| CDS TCA 72 bp | AGAATTCAAAGAGCCGAGAGAACTTCAGGAGGCGGTTaGACCTCAGTTCTGGGTAGTTCACGCCCAACTTTA | + |
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Preference number: 6 (lower is better) Translates to: RIQRAERTSGGG*TSVLGSSRPTL Trigger: TAAAGTTGGGCGTGAACTACCCAGAACTGAGGTTCAACCGCCTCCTGAAGTTCTCTCGGCTCTTTGAATTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027288.10 ENSMUST00000194195.6 ENSMUST00000195272.6 |
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| CDS GCA 72 bp | TCAGGTGCTCTGATTGTAGCTCATCAAAACAGGCCCTaGATACAAGTAGACACCAGTTATAGAAGACTGGGA | + |
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Preference number: 6 (lower is better) Translates to: SGALIVAHQNRP*IQVDTSYRRLG Trigger: TCCCAGTCTTCTATAACTGGTGTCTACTTGTATGCAGGGCCTGTTTTGATGAGCTACAATCAGAGCACCTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027288.10 ENSMUST00000194195.6 ENSMUST00000195272.6 |
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