Pregenerated sensors for CNFN (Mus musculus)
Ensembl gene IDs: ENSMUSG00000063651Ensembl transcript IDs: ENSMUST00000076276.5, ENSMUST00000167591.8
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 72 bp | GTGGGACAGGGGCAGTGGGACAGGCTTTCCAAGGAGTaGCCTCCCAGGGAGGCCAGGCAAGACCAAGGACCA | + |
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Preference number: 3 (lower is better) Translates to: VGQGQWDRLSKE*PPREARQDQGP Trigger: TGGTCCTTGGTCTTGCCTGGCCTCCCTGGGAGGCCACTCCTTGGAAAGCCTGTCCCACTGCCCCTGTCCCAC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076276.5 ENSMUST00000167591.8 |
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| CDS-3UTR TCA 90 bp | GGTGGGACAGGGGCAGTGGGACAGGCTTTCCAAGGAGTGGCCTCCCAGGGAGGCAGGGCAGGCAAAAGGTaGGGGCAGCCCAGTCGTGCC | + |
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Preference number: 4 (lower is better) Translates to: GGTGAVGQAFQGVASQGGRAGKR*GQPSRA Trigger: GGCACGACTGGGCTGCCCTCACCTTTTGCCTGCCCT...GCCTCCCTGGGAGGCCACTCCTTGGAAAGCCTGTCCCACTGCCCCTGTCCCACC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000076276.5 ENSMUST00000167591.8 |
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| CDS-3UTR GCA 90 bp | TTTGGCGGTGGGACAGGGGCAGTGGGACAGGCTTTCCAAGGAGTGGCCTCCCAGAGGGCAGCCCAGTCGTaGCCGACGGAGCCCTGGATG | + |
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Preference number: 4 (lower is better) Translates to: FGGGTGAVGQAFQGVASQRAAQS*PTEPWM Trigger: CATCCAGGGCTCCGTCGGGCACGACTGGGCTGCCCT...CTGGGAGGCCACTCCTTGGAAAGCCTGTCCCACTGCCCCTGTCCCACCGCCAAA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076276.5 ENSMUST00000167591.8 |
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| CDS-3UTR TCA 90 bp | GTGGGACAGGGGCAGTGGGACAGGCTTTCCAAGGAGTGGCCTCCCAGGGAGGCCCCGTGTGCCAATCGCTaGGCTGTGTCTGGTAGCAGG | + |
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Preference number: 4 (lower is better) Translates to: VGQGQWDRLSKEWPPREAPCANR*AVSGSR Trigger: CCTGCTACCAGACACAGCTCAGCGATTGGCACACGG...GGCCTCCCTGGGAGGCCACTCCTTGGAAAGCCTGTCCCACTGCCCCTGTCCCAC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076276.5 ENSMUST00000167591.8 |
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| CDS-3UTR GCA 90 bp | GTGGGACAGGGGCAGTGGGACAGGCTTTCCAAGGAGTGGCCTCCCAGGGAGGCCCAAAGTCATCGGAGATaGGGCAGGCCAGGCACAGCG | + |
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Preference number: 4 (lower is better) Translates to: VGQGQWDRLSKEWPPREAQSHRR*GRPGTA Trigger: CGCTGTGCCTGGCCTGCCGCATCTCCGATGACTTTG...GGCCTCCCTGGGAGGCCACTCCTTGGAAAGCCTGTCCCACTGCCCCTGTCCCAC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076276.5 ENSMUST00000167591.8 |
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| CDS-3UTR GCA 90 bp | TTTGGCGGTGGGACAGGGGCAGTGGGACAGGCTTTCCAAGGAGTGGCCTCCCAGGGTAGCGCTCCCTCATaGCGGTGCGCAGAGAGTGCA | + |
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Preference number: 4 (lower is better) Translates to: FGGGTGAVGQAFQGVASQGSAPS*RCAESA Trigger: TGCACTCTCTGCGCACCGGCATGAGGGAGCGCTACC...CTGGGAGGCCACTCCTTGGAAAGCCTGTCCCACTGCCCCTGTCCCACCGCCAAA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076276.5 ENSMUST00000167591.8 |
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| CDS-3UTR GCA 90 bp | GAGTGGCCTCCCAGGGAGGCCAGGCAAGACCAAGGACCAAGGACCAAGAATGTCAGGGCAGCCCAGTCGTaGCCGACGGAGCCCTGGATG | + |
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Preference number: 4 (lower is better) Translates to: EWPPREARQDQGPRTKNVRAAQS*PTEPWM Trigger: CATCCAGGGCTCCGTCGGGCACGACTGGGCTGCCCT...GACATTCTTGGTCCTTGGTCCTTGGTCTTGCCTGGCCTCCCTGGGAGGCCACTC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076276.5 ENSMUST00000167591.8 |
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| CDS-3UTR TCA 90 bp | GCAGTGGGACAGGCTTTCCAAGGAGTGGCCTCCCAGGGAGGCCAGGCAAGACCACCGTGTGCCAATCGCTaGGCTGTGTCTGGTAGCAGG | + |
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Preference number: 4 (lower is better) Translates to: AVGQAFQGVASQGGQARPPCANR*AVSGSR Trigger: CCTGCTACCAGACACAGCTCAGCGATTGGCACACGG...TGGTCTTGCCTGGCCTCCCTGGGAGGCCACTCCTTGGAAAGCCTGTCCCACTGC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076276.5 ENSMUST00000167591.8 |
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| CDS-3UTR TCA 90 bp | GAGTGGCCTCCCAGGGAGGCCAGGCAAGACCAAGGACCAAGGACCAAGAATGTCAGGGCAGGCAAAAGGTaGGGGCAGCCCAGTCGTGCC | + |
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Preference number: 4 (lower is better) Translates to: EWPPREARQDQGPRTKNVRAGKR*GQPSRA Trigger: GGCACGACTGGGCTGCCCTCACCTTTTGCCTGCCCT...GACATTCTTGGTCCTTGGTCCTTGGTCTTGCCTGGCCTCCCTGGGAGGCCACTC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076276.5 ENSMUST00000167591.8 |
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| CDS-3UTR GCA 90 bp | GGAGTGGCCTCCCAGGGAGGCCAGGCAAGACCAAGGACCAAGGACCAAGAATGTGGTAGCGCTCCCTCATaGCGGTGCGCAGAGAGTGCA | + |
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Preference number: 4 (lower is better) Translates to: GVASQGGQARPRTKDQECGSAPS*RCAESA Trigger: TGCACTCTCTGCGCACCGGCATGAGGGAGCGCTACC...ACATTCTTGGTCCTTGGTCCTTGGTCTTGCCTGGCCTCCCTGGGAGGCCACTCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076276.5 ENSMUST00000167591.8 |
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| CDS-3UTR TCA 90 bp | GCGGTGGGACAGGGGCAGTGGGACAGGCTTTCCAAGGAGTGGCCTCCCAGGGAGACTAGTCACTGGATATaGCATGGCTTTGCCTTTCAC | + |
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Preference number: 4 (lower is better) Translates to: AVGQGQWDRLSKEWPPRETSHWI*HGFAFH Trigger: GTGAAAGGCAAAGCCATGTCATATCCAGTGACTAGT...CTCCCTGGGAGGCCACTCCTTGGAAAGCCTGTCCCACTGCCCCTGTCCCACCGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167591.8 |
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| CDS-3UTR CCA 90 bp | GTGGGACAGGCTTTCCAAGGAGTGGCCTCCCAGGGAGGCCAGGCAAGACCAAGGGCTTTGCCTTTCACGTaGTCGTGCATCTCAAACTGC | + |
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Preference number: 4 (lower is better) Translates to: VGQAFQGVASQGGQARPRALPFT*SCISNC Trigger: GCAGTTTGAGATGCACGACCACGTGAAAGGCAAAGC...CCTTGGTCTTGCCTGGCCTCCCTGGGAGGCCACTCCTTGGAAAGCCTGTCCCAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167591.8 |
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| CDS-3UTR CCA 90 bp | AGTGGGACAGGCTTTCCAAGGAGTGGCCTCCCAGGGAGGCCAGGCAAGACCAAGTCACTGGATATGACATaGCTTTGCCTTTCACGTGGT | + |
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Preference number: 4 (lower is better) Translates to: SGTGFPRSGLPGRPGKTKSLDMT*LCLSRG Trigger: ACCACGTGAAAGGCAAAGCCATGTCATATCCAGTGA...CTTGGTCTTGCCTGGCCTCCCTGGGAGGCCACTCCTTGGAAAGCCTGTCCCACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167591.8 |
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| CDS GCA 90 bp | CGTGCCCGACGGAGCCCTGGATGTGGTAGCGCTCCCTCATGCCGGTaGGCAGAGAGTGCAGACCTCCGGGCAGGTAGGGCGCACAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: RARRSPGCGSAPSCR*AESADLRAGRAHSS Trigger: GCTGCTGTGCGCCCTACCTGCCCGGAGGTCTGCACTCTCTGCGCACCGGCATGAGGGAGCGCTACCACATCCAGGGCTCCGTCGGGCACG 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076276.5 ENSMUST00000167591.8 |
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| CDS TCA 90 bp | TCAGTTCCCGCGCCATCTGACAGAGGGCGCAGGGCAGGCAAAAGGTaGGGGCAGCCCAGTCGTGCCCGACGGAGCCCTGGATGTGGTAGC | + |
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Preference number: 5 (lower is better) Translates to: SVPAPSDRGRRAGKR*GQPSRARRSPGCGS Trigger: GCTACCACATCCAGGGCTCCGTCGGGCACGACTGGGCTGCCCTCACCTTTTGCCTGCCCTGCGCCCTCTGTCAGATGGCGCGGGAACTGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076276.5 ENSMUST00000167591.8 |
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| CDS GCA 90 bp | CGGGCAGGTAGGGCGCACAGCAGCACTCCCCAAAGTCATCGGAGATaGGGCAGGCCAGGCACAGCGGGGCGAAAGTGCCGCACAGACAGA | + |
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Preference number: 5 (lower is better) Translates to: RAGRAHSSTPQSHRR*GRPGTAGRKCRTDR Trigger: TCTGTCTGTGCGGCACTTTCGCCCCGCTGTGCCTGGCCTGCCGCATCTCCGATGACTTTGGGGAGTGCTGCTGTGCGCCCTACCTGCCCG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076276.5 ENSMUST00000167591.8 |
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| CDS-3UTR CAA 90 bp | GAGTGGCCTCCCAGGGAGGCCAGGCAAGACCAAGGACCAAGGACCAAGAATGTCGGATATGACATGGCTTaGCCTTTCACGTGGTCGTGC | + |
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Preference number: 5 (lower is better) Translates to: EWPPREARQDQGPRTKNVGYDMA*PFTWSC Trigger: GCACGACCACGTGAAAGGCAAAGCCATGTCATATCC...GACATTCTTGGTCCTTGGTCCTTGGTCTTGCCTGGCCTCCCTGGGAGGCCACTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167591.8 |
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| CDS TCA 90 bp | CTGGTAGCAGGTGTTGGCGCACTGAGGCTGACTAGTCACTGGATATaGCATGGCTTTGCCTTTCACGTGGTCGTGCATCTCAAACTGCAT | + |
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Preference number: 5 (lower is better) Translates to: LVAGVGALRLTSHWI*HGFAFHVVVHLKLH Trigger: ATGCAGTTTGAGATGCACGACCACGTGAAAGGCAAAGCCATGTCATATCCAGTGACTAGTCAGCCTCAGTGCGCCAACACCTGCTACCAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167591.8 |
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| CDS TCA 72 bp | GCGCCATCTGACAGAGGGCGCAGGGCAGGCAAAAGGTaGGGGCAGCCCAGTCGTGCCCGACGGAGCCCTGGA | + |
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Preference number: 6 (lower is better) Translates to: APSDRGRRAGKR*GQPSRARRSPG Trigger: TCCAGGGCTCCGTCGGGCACGACTGGGCTGCCCTCACCTTTTGCCTGCCCTGCGCCCTCTGTCAGATGGCGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076276.5 ENSMUST00000167591.8 |
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| CDS GCA 72 bp | CGGAGCCCTGGATGTGGTAGCGCTCCCTCATGCCGGTaGGCAGAGAGTGCAGACCTCCGGGCAGGTAGGGCG | + |
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Preference number: 6 (lower is better) Translates to: RSPGCGSAPSCR*AESADLRAGRA Trigger: CGCCCTACCTGCCCGGAGGTCTGCACTCTCTGCGCACCGGCATGAGGGAGCGCTACCACATCCAGGGCTCCG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076276.5 ENSMUST00000167591.8 |
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| CDS GCA 72 bp | GCCCGACGGAGCCCTGGATGTGGTAGCGCTCCCTCATaGCGGTGCGCAGAGAGTGCAGACCTCCGGGCAGGT | + |
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Preference number: 6 (lower is better) Translates to: ARRSPGCGSAPS*RCAESADLRAG Trigger: ACCTGCCCGGAGGTCTGCACTCTCTGCGCACCGGCATGAGGGAGCGCTACCACATCCAGGGCTCCGTCGGGC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076276.5 ENSMUST00000167591.8 |
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| CDS GCA 72 bp | AGGGCGCACAGCAGCACTCCCCAAAGTCATCGGAGATaGGGCAGGCCAGGCACAGCGGGGCGAAAGTGCCGC | + |
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Preference number: 6 (lower is better) Translates to: RAHSSTPQSHRR*GRPGTAGRKCR Trigger: GCGGCACTTTCGCCCCGCTGTGCCTGGCCTGCCGCATCTCCGATGACTTTGGGGAGTGCTGCTGTGCGCCCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076276.5 ENSMUST00000167591.8 |
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| CDS CAA 90 bp | AGGCACAGCGGGGCGAAAGTGCCGCACAGACAGACGGGCATGTCGTaGCAACAGTCGGTGAGGCCCGTGTGCCAATCGCTGAGCTGTGTC | + |
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Preference number: 6 (lower is better) Translates to: RHSGAKVPHRQTGMS*QQSVRPVCQSLSCV Trigger: GACACAGCTCAGCGATTGGCACACGGGCCTCACCGACTGTTGCAACGACATGCCCGTCTGTCTGTGCGGCACTTTCGCCCCGCTGTGCCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076276.5 ENSMUST00000167591.8 |
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