RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CNBD2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000038085

Ensembl transcript IDs: ENSMUST00000037096.9, ENSMUST00000073942.12, ENSMUST00000109580.2

Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp AGCCACCCCTGTGCAGCAGTGTTGGGTGAGGGTCCAGGAAAGCACTaGTCCCATCCTCGTCCTCAGTTATGGCCACTGTGCCCAGGTAGA +
Preference number: 5 (lower is better)
Translates to: SHPCAAVLGEGPGKH*SHPRPQLWPLCPGR
Trigger: TCTACCTGGGCACAGTGGCCATAACTGAGGACGAGGATGGGAGCAGTGCTTTCCTGGACCCTCACCCAACACTGCTGCACAGGGGTGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037096.9
ENSMUST00000073942.12
ENSMUST00000109580.2
CDS TCA 90 bp ATCCGAATCGTGGTCTCGCTGATCCTTGGGAGGGTCTCCTCAGATTaGTTGACCACCCACCTCGGGGGTCTTTCACCAGGACAGCCAGGG +
Preference number: 5 (lower is better)
Translates to: IRIVVSLILGRVSSD*LTTHLGGLSPGQPG
Trigger: CCCTGGCTGTCCTGGTGAAAGACCCCCGAGGTGGGTGGTCAATCAATCTGAGGAGACCCTCCCAAGGATCAGCGAGACCACGATTCGGAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000073942.12
CDS CCA 90 bp CTCTGTCGACCACCAGGAACTCTGTCTCCTCCATGCAGACCACCGTaGCACTCCTTACTGTGGTGCTTAGAAGGCCCATTTCCCCGAAGG +
Preference number: 5 (lower is better)
Translates to: LCRPPGTLSPPCRPP*HSLLWCLEGPFPRR
Trigger: CCTTCGGGGAAATGGGCCTTCTAAGCACCACAGTAAGGAGTGCCACGGTGGTCTGCATGGAGGAGACAGAGTTCCTGGTGGTCGACAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037096.9
ENSMUST00000073942.12
ENSMUST00000109580.2
CDS GCA 90 bp GATCCAGCAGCTCCAGTTGCTGCCAGACCCACTTGTAATAGGCACTaGAGTCGCCCAGGGCTACCAATCGCAGGATTTCACAGTTGCCCT +
Preference number: 5 (lower is better)
Translates to: DPAAPVAARPTCNRH*SRPGLPIAGFHSCP
Trigger: AGGGCAACTGTGAAATCCTGCGATTGGTAGCCCTGGGCGACTGCAGTGCCTATTACAAGTGGGTCTGGCAGCAACTGGAGCTGCTGGATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037096.9
ENSMUST00000073942.12
ENSMUST00000109580.2
CDS CCA 90 bp CTCAGATTTCGACTCTGTCGTGTCCGACTTGTCCGCCGGCTCCAATaGGGACCTTGCAGTGCCGCCATCCTTAGTGTCAGTAGAGCTGAT +
Preference number: 5 (lower is better)
Translates to: LRFRLCRVRLVRRLQ*GPCSAAILSVSRAD
Trigger: ATCAGCTCTACTGACACTAAGGATGGCGGCACTGCAAGGTCCCCATTGGAGCCGGCGGACAAGTCGGACACGACAGAGTCGAAATCTGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037096.9
CDS GCA 90 bp CAACGAAATCCTCTCTGTCGACCACCAGGAACTCTGTCTCCTCCATaGAGACCACCGTGGCACTCCTTACTGTGGTGCTTAGAAGGCCCA +
Preference number: 5 (lower is better)
Translates to: QRNPLCRPPGTLSPP*RPPWHSLLWCLEGP
Trigger: TGGGCCTTCTAAGCACCACAGTAAGGAGTGCCACGGTGGTCTGCATGGAGGAGACAGAGTTCCTGGTGGTCGACAGAGAGGATTTCGTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037096.9
ENSMUST00000073942.12
ENSMUST00000109580.2
CDS TCA 90 bp ATGAAGGGCCGGCAATCTCGCTGGATTTCCGGGACAAAGGCCTGGTaGAGGCCCACAATCTCTCCTTCCTCTGTCTTGTGGATCTTCATG +
Preference number: 5 (lower is better)
Translates to: MKGRQSRWISGTKAW*RPTISPSSVLWIFM
Trigger: CATGAAGATCCACAAGACAGAGGAAGGAGAGATTGTGGGCCTTCACCAGGCCTTTGTCCCGGAAATCCAGCGAGATTGCCGGCCCTTCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037096.9
ENSMUST00000109580.2
CDS TCA 90 bp CAGGATGGCTTCTTCTGTGTGATAGAAATGGCCCTCGGAGGGAAGTaGCCCTCCTGTGCAGCAAAGTCCTCGGTAACAAACGAGATACGG +
Preference number: 5 (lower is better)
Translates to: QDGFFCVIEMALGGK*PSCAAKSSVTNEIR
Trigger: CCGTATCTCGTTTGTTACCGAGGACTTTGCTGCACAGGAGGGTCACTTCCCTCCGAGGGCCATTTCTATCACACAGAAGAAGCCATCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037096.9
ENSMUST00000073942.12
CDS GCA 90 bp CTTCTGTGTGATAGAAATGGCCCTCGGAGGGAAGTGACCCTCCTGTaGAGCAAAGTCCTCGGTAACAAACGAGATACGGCCTTGCTTCTT +
Preference number: 5 (lower is better)
Translates to: LLCDRNGPRREVTLL*SKVLGNKRDTALLL
Trigger: AAGAAGCAAGGCCGTATCTCGTTTGTTACCGAGGACTTTGCTGCACAGGAGGGTCACTTCCCTCCGAGGGCCATTTCTATCACACAGAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037096.9
ENSMUST00000073942.12
CDS CCA 90 bp CCCAGCAACTTGGGGAGAGTGTTTTCTACTTTGTTGATCTTGCCGTaGAAGTCTATTCCCTGTTGCTCTCTGGCTTTCTGGAGACGCAGA +
Preference number: 5 (lower is better)
Translates to: PSNLGRVFSTLLILP*KSIPCCSLAFWRRR
Trigger: TCTGCGTCTCCAGAAAGCCAGAGAGCAACAGGGAATAGACTTCCACGGCAAGATCAACAAAGTAGAAAACACTCTCCCCAAGTTGCTGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037096.9
ENSMUST00000109580.2
CDS GCA 90 bp GTACCGATACTGAGTTTCCTTCTGAACTTCGTCACCCAGCTTATTTaGAACGAAATCCTCTCTGTCGACCACCAGGAACTCTGTCTCCTC +
Preference number: 5 (lower is better)
Translates to: VPILSFLLNFVTQLI*NEILSVDHQELCLL
Trigger: GAGGAGACAGAGTTCCTGGTGGTCGACAGAGAGGATTTCGTTGCAAATAAGCTGGGTGACGAAGTTCAGAAGGAAACTCAGTATCGGTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037096.9
ENSMUST00000073942.12
ENSMUST00000109580.2
CDS TCA 90 bp GATGAATGCCGAATTCATAAAGTCTTTAGACACCATCTGTCCGTATaGGAACCTCTCTATCCTCCCCAAGGCCACCAGCTTCCAGAGCTT +
Preference number: 5 (lower is better)
Translates to: DECRIHKVFRHHLSV*EPLYPPQGHQLPEL
Trigger: AAGCTCTGGAAGCTGGTGGCCTTGGGGAGGATAGAGAGGTTCTCATACGGACAGATGGTGTCTAAAGACTTTATGAATTCGGCATTCATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037096.9
ENSMUST00000073942.12
ENSMUST00000109580.2
CDS TCA 90 bp GTCAACCATGTCATAAAACTTCTCTTTTCTTACTTGTATCAACTCTaGTCCCAAACTCAGAAGGATGAAGGGCCGGCAATCTCGCTGGAT +
Preference number: 5 (lower is better)
Translates to: VNHVIKLLFSYLYQL*SQTQKDEGPAISLD
Trigger: ATCCAGCGAGATTGCCGGCCCTTCATCCTTCTGAGTTTGGGATCAGAGTTGATACAAGTAAGAAAAGAGAAGTTTTATGACATGGTTGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037096.9
ENSMUST00000109580.2
CDS CCA 90 bp TATAGTCGTTTTCCTTCAGGAAACTCTGGCACAGGTCTTCATCGCTaGGATAGTCCACATCCATCTTTATTATCTTTGCTCTTGTCTCCT +
Preference number: 5 (lower is better)
Translates to: YSRFPSGNSGTGLHR*DSPHPSLLSLLLSP
Trigger: AGGAGACAAGAGCAAAGATAATAAAGATGGATGTGGACTATCCCAGCGATGAAGACCTGTGCCAGAGTTTCCTGAAGGAAAACGACTATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037096.9
ENSMUST00000109580.2
CDS GCA 72 bp CCTCCATGCAGACCACCGTGGCACTCCTTACTGTGGTaGTTAGAAGGCCCATTTCCCCGAAGGAGCCACCCC +
Preference number: 6 (lower is better)
Translates to: PPCRPPWHSLLW*LEGPFPRRSHP
Trigger: GGGGTGGCTCCTTCGGGGAAATGGGCCTTCTAAGCACCACAGTAAGGAGTGCCACGGTGGTCTGCATGGAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037096.9
ENSMUST00000073942.12
ENSMUST00000109580.2
CDS CCA 72 bp CGACTCTGTCGTGTCCGACTTGTCCGCCGGCTCCAATaGGGACCTTGCAGTGCCGCCATCCTTAGTGTCAGT +
Preference number: 6 (lower is better)
Translates to: RLCRVRLVRRLQ*GPCSAAILSVS
Trigger: ACTGACACTAAGGATGGCGGCACTGCAAGGTCCCCATTGGAGCCGGCGGACAAGTCGGACACGACAGAGTCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037096.9
CDS CCA 72 bp CATTTCCCCGAAGGAGCCACCCCTGTGCAGCAGTGTTaGGTGAGGGTCCAGGAAAGCACTGCTCCCATCCTC +
Preference number: 6 (lower is better)
Translates to: HFPEGATPVQQC*VRVQESTAPIL
Trigger: GAGGATGGGAGCAGTGCTTTCCTGGACCCTCACCCAACACTGCTGCACAGGGGTGGCTCCTTCGGGGAAATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037096.9
ENSMUST00000073942.12
ENSMUST00000109580.2
CDS CAA 72 bp CGTGGTCTCGCTGATCCTTGGGAGGGTCTCCTCAGATaGATTGACCACCCACCTCGGGGGTCTTTCACCAGG +
Preference number: 6 (lower is better)
Translates to: RGLADPWEGLLR*IDHPPRGSFTR
Trigger: CCTGGTGAAAGACCCCCGAGGTGGGTGGTCAATCAATCTGAGGAGACCCTCCCAAGGATCAGCGAGACCACG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000073942.12
CDS CAA 90 bp CATCCGAATCGTGGTCTCGCTGATCCTTGGGAGGGTCTCCTCAGATaGATTGACCACCCACCTCGGGGGTCTTTCACCAGGACAGCCAGG +
Preference number: 6 (lower is better)
Translates to: HPNRGLADPWEGLLR*IDHPPRGSFTRTAR
Trigger: CCTGGCTGTCCTGGTGAAAGACCCCCGAGGTGGGTGGTCAATCAATCTGAGGAGACCCTCCCAAGGATCAGCGAGACCACGATTCGGATG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000073942.12
CDS TCA 72 bp GTGGTCTCGCTGATCCTTGGGAGGGTCTCCTCAGATTaGTTGACCACCCACCTCGGGGGTCTTTCACCAGGA +
Preference number: 6 (lower is better)
Translates to: VVSLILGRVSSD*LTTHLGGLSPG
Trigger: TCCTGGTGAAAGACCCCCGAGGTGGGTGGTCAATCAATCTGAGGAGACCCTCCCAAGGATCAGCGAGACCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000073942.12
CDS CCA 72 bp TCTCCTCCATGCAGACCACCGTGGCACTCCTTACTGTaGTGCTTAGAAGGCCCATTTCCCCGAAGGAGCCAC +
Preference number: 6 (lower is better)
Translates to: SPPCRPPWHSLL*CLEGPFPRRSH
Trigger: GTGGCTCCTTCGGGGAAATGGGCCTTCTAAGCACCACAGTAAGGAGTGCCACGGTGGTCTGCATGGAGGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037096.9
ENSMUST00000073942.12
ENSMUST00000109580.2
CDS TCA 72 bp CGGCAATCTCGCTGGATTTCCGGGACAAAGGCCTGGTaGAGGCCCACAATCTCTCCTTCCTCTGTCTTGTGG +
Preference number: 6 (lower is better)
Translates to: RQSRWISGTKAW*RPTISPSSVLW
Trigger: CCACAAGACAGAGGAAGGAGAGATTGTGGGCCTTCACCAGGCCTTTGTCCCGGAAATCCAGCGAGATTGCCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037096.9
ENSMUST00000109580.2
CDS GCA 72 bp CCTCTCTGTCGACCACCAGGAACTCTGTCTCCTCCATaGAGACCACCGTGGCACTCCTTACTGTGGTGCTTA +
Preference number: 6 (lower is better)
Translates to: PLCRPPGTLSPP*RPPWHSLLWCL
Trigger: TAAGCACCACAGTAAGGAGTGCCACGGTGGTCTGCATGGAGGAGACAGAGTTCCTGGTGGTCGACAGAGAGG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037096.9
ENSMUST00000073942.12
ENSMUST00000109580.2
CDS CCA 72 bp GCAGAGGTCTTGGATCTCCTGGTGGGTCCTCCAGGATaGCTTCTTCTGTGTGATAGAAATGGCCCTCGGAGG +
Preference number: 6 (lower is better)
Translates to: AEVLDLLVGPPG*LLLCDRNGPRR
Trigger: CCTCCGAGGGCCATTTCTATCACACAGAAGAAGCCATCCTGGAGGACCCACCAGGAGATCCAAGACCTCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037096.9
ENSMUST00000073942.12
CDS CCA 72 bp GCAGAGGTCTTGGATCTCCTGGTGGGTCCTCCAGGATaGCTTCTTCTCCTGTGCAGCAAAGTCCTCGGTAAC +
Preference number: 6 (lower is better)
Translates to: AEVLDLLVGPPG*LLLLCSKVLGN
Trigger: GTTACCGAGGACTTTGCTGCACAGGAGAAGAAGCCATCCTGGAGGACCCACCAGGAGATCCAAGACCTCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109580.2
CDS GCA 72 bp GATAGAAATGGCCCTCGGAGGGAAGTGACCCTCCTGTaGAGCAAAGTCCTCGGTAACAAACGAGATACGGCC +
Preference number: 6 (lower is better)
Translates to: DRNGPRREVTLL*SKVLGNKRDTA
Trigger: GGCCGTATCTCGTTTGTTACCGAGGACTTTGCTGCACAGGAGGGTCACTTCCCTCCGAGGGCCATTTCTATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037096.9
ENSMUST00000073942.12
CDS CCA 72 bp CCACCAGGAACTCTGTCTCCTCCATGCAGACCACCGTaGCACTCCTTACTGTGGTGCTTAGAAGGCCCATTT +
Preference number: 6 (lower is better)
Translates to: PPGTLSPPCRPP*HSLLWCLEGPF
Trigger: AAATGGGCCTTCTAAGCACCACAGTAAGGAGTGCCACGGTGGTCTGCATGGAGGAGACAGAGTTCCTGGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037096.9
ENSMUST00000073942.12
ENSMUST00000109580.2
CDS CAA 90 bp CCCATTGTCATGAATTCTCAGAGGTTTGTGATCCAGCAGCTCCAGTaGCTGCCAGACCCACTTGTAATAGGCACTGCAGTCGCCCAGGGC +
Preference number: 6 (lower is better)
Translates to: PIVMNSQRFVIQQLQ*LPDPLVIGTAVAQG
Trigger: GCCCTGGGCGACTGCAGTGCCTATTACAAGTGGGTCTGGCAGCAACTGGAGCTGCTGGATCACAAACCTCTGAGAATTCATGACAATGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073942.12
CDS CAA 72 bp TCCGCCTTTATCTCCTTAATCGAGGCCGGACTCTCCTaGTCTTCCTCTGATCTGGAATCCGATCCCGACTCA +
Preference number: 6 (lower is better)
Translates to: SAFISLIEAGLS*SSSDLESDPDS
Trigger: TGAGTCGGGATCGGATTCCAGATCAGAGGAAGACAAGGAGAGTCCGGCCTCGATTAAGGAGATAAAGGCGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037096.9
CDS CAA 90 bp TTCATTGTCATGAATTCTCAGAGGTTTGTGATCCAGCAGCTCCAGTaGCTGCCAGACCCACTTGTAATAGGCACTGCAGTCGCCCAGGGC +
Preference number: 6 (lower is better)
Translates to: FIVMNSQRFVIQQLQ*LPDPLVIGTAVAQG
Trigger: GCCCTGGGCGACTGCAGTGCCTATTACAAGTGGGTCTGGCAGCAACTGGAGCTGCTGGATCACAAACCTCTGAGAATTCATGACAATGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037096.9
ENSMUST00000109580.2
CDS TCA 72 bp GGCCCAGCAACTTGGGGAGAGTGTTTTCTACTTTGTTaGTCTTGCCGTGGAAGTCTATTCCCTGTTGCTCTC +
Preference number: 6 (lower is better)
Translates to: GPATWGECFLLC*SCRGSLFPVAL
Trigger: GAGAGCAACAGGGAATAGACTTCCACGGCAAGATCAACAAAGTAGAAAACACTCTCCCCAAGTTGCTGGGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037096.9
ENSMUST00000109580.2
CDS CAA 72 bp ATGAATTCTCAGAGGTTTGTGATCCAGCAGCTCCAGTaGCTGCCAGACCCACTTGTAATAGGCACTGCAGTC +
Preference number: 6 (lower is better)
Translates to: MNSQRFVIQQLQ*LPDPLVIGTAV
Trigger: GACTGCAGTGCCTATTACAAGTGGGTCTGGCAGCAACTGGAGCTGCTGGATCACAAACCTCTGAGAATTCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037096.9
ENSMUST00000073942.12
ENSMUST00000109580.2
CDS CAA 72 bp GGGCCCAGCAACTTGGGGAGAGTGTTTTCTACTTTGTaGATCTTGCCGTGGAAGTCTATTCCCTGTTGCTCT +
Preference number: 6 (lower is better)
Translates to: GPSNLGRVFSTL*ILPWKSIPCCS
Trigger: AGAGCAACAGGGAATAGACTTCCACGGCAAGATCAACAAAGTAGAAAACACTCTCCCCAAGTTGCTGGGCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037096.9
ENSMUST00000109580.2
CDS CAA 72 bp TTCTTCTTGGTCTGGACTGGGATGAATGGTGACTTATaGAGGGGCTCCACCAGTAACCGCAGCAAATCCTTC +
Preference number: 6 (lower is better)
Translates to: FFLVWTGMNGDL*RGSTSNRSKSF
Trigger: GAAGGATTTGCTGCGGTTACTGGTGGAGCCCCTCAATAAGTCACCATTCATCCCAGTCCAGACCAAGAAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037096.9
ENSMUST00000109580.2
CDS CAA 90 bp ACCCTCCTGTGCAGCAAAGTCCTCGGTAACAAACGAGATACGGCCTaGCTTCTTTTTATCCCAGAAGGAGAAGTCAGGATGCTTCTTGTG +
Preference number: 6 (lower is better)
Translates to: TLLCSKVLGNKRDTA*LLFIPEGEVRMLLV
Trigger: CACAAGAAGCATCCTGACTTCTCCTTCTGGGATAAAAAGAAGCAAGGCCGTATCTCGTTTGTTACCGAGGACTTTGCTGCACAGGAGGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037096.9
ENSMUST00000073942.12
CDS CAA 90 bp TTTGGGCCCAGCAACTTGGGGAGAGTGTTTTCTACTTTGTTGATCTaGCCGTGGAAGTCTATTCCCTGTTGCTCTCTGGCTTTCTGGAGA +
Preference number: 6 (lower is better)
Translates to: FGPSNLGRVFSTLLI*PWKSIPCCSLAFWR
Trigger: TCTCCAGAAAGCCAGAGAGCAACAGGGAATAGACTTCCACGGCAAGATCAACAAAGTAGAAAACACTCTCCCCAAGTTGCTGGGCCCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037096.9
ENSMUST00000109580.2
CDS CCA 72 bp CCGTGGAAGTCTATTCCCTGTTGCTCTCTGGCTTTCTaGAGACGCAGAAGTTTCAAATACGTGAAATCCTGC +
Preference number: 6 (lower is better)
Translates to: PWKSIPCCSLAF*RRRSFKYVKSC
Trigger: GCAGGATTTCACGTATTTGAAACTTCTGCGTCTCCAGAAAGCCAGAGAGCAACAGGGAATAGACTTCCACGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037096.9
ENSMUST00000109580.2
CDS CAA 72 bp TTTGGGCCCAGCAACTTGGGGAGAGTGTTTTCTACTTaGTTGATCTTGCCGTGGAAGTCTATTCCCTGTTGC +
Preference number: 6 (lower is better)
Translates to: FGPSNLGRVFST*LILPWKSIPCC
Trigger: GCAACAGGGAATAGACTTCCACGGCAAGATCAACAAAGTAGAAAACACTCTCCCCAAGTTGCTGGGCCCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037096.9
ENSMUST00000109580.2
CDS CAA 90 bp TGTACCGATACTGAGTTTCCTTCTGAACTTCGTCACCCAGCTTATTaGCAACGAAATCCTCTCTGTCGACCACCAGGAACTCTGTCTCCT +
Preference number: 6 (lower is better)
Translates to: CTDTEFPSELRHPAY*QRNPLCRPPGTLSP
Trigger: AGGAGACAGAGTTCCTGGTGGTCGACAGAGAGGATTTCGTTGCAAATAAGCTGGGTGACGAAGTTCAGAAGGAAACTCAGTATCGGTACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037096.9
ENSMUST00000073942.12
ENSMUST00000109580.2
CDS CAA 90 bp TTGATCTTTGGGCCCAGCAACTTGGGGAGAGTGTTTTCTACTTTGTaGATCTTGCCGTGGAAGTCTATTCCCTGTTGCTCTCTGGCTTTC +
Preference number: 6 (lower is better)
Translates to: LIFGPSNLGRVFSTL*ILPWKSIPCCSLAF
Trigger: GAAAGCCAGAGAGCAACAGGGAATAGACTTCCACGGCAAGATCAACAAAGTAGAAAACACTCTCCCCAAGTTGCTGGGCCCAAAGATCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037096.9
ENSMUST00000109580.2
CDS CAA 90 bp GATTTGATCTTTGGGCCCAGCAACTTGGGGAGAGTGTTTTCTACTTaGTTGATCTTGCCGTGGAAGTCTATTCCCTGTTGCTCTCTGGCT +
Preference number: 6 (lower is better)
Translates to: DLIFGPSNLGRVFST*LILPWKSIPCCSLA
Trigger: AGCCAGAGAGCAACAGGGAATAGACTTCCACGGCAAGATCAACAAAGTAGAAAACACTCTCCCCAAGTTGCTGGGCCCAAAGATCAAATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037096.9
ENSMUST00000109580.2
CDS CAA 90 bp CTTCTCCTGTGCAGCAAAGTCCTCGGTAACAAACGAGATACGGCCTaGCTTCTTTTTATCCCAGAAGGAGAAGTCAGGATGCTTCTTGTG +
Preference number: 6 (lower is better)
Translates to: LLLCSKVLGNKRDTA*LLFIPEGEVRMLLV
Trigger: CACAAGAAGCATCCTGACTTCTCCTTCTGGGATAAAAAGAAGCAAGGCCGTATCTCGTTTGTTACCGAGGACTTTGCTGCACAGGAGAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109580.2
CDS TCA 72 bp CGAATTCATAAAGTCTTTAGACACCATCTGTCCGTATaGGAACCTCTCTATCCTCCCCAAGGCCACCAGCTT +
Preference number: 6 (lower is better)
Translates to: RIHKVFRHHLSV*EPLYPPQGHQL
Trigger: AAGCTGGTGGCCTTGGGGAGGATAGAGAGGTTCTCATACGGACAGATGGTGTCTAAAGACTTTATGAATTCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037096.9
ENSMUST00000073942.12
ENSMUST00000109580.2
CDS CCA 72 bp TTGGGGAGAGTGTTTTCTACTTTGTTGATCTTGCCGTaGAAGTCTATTCCCTGTTGCTCTCTGGCTTTCTGG +
Preference number: 6 (lower is better)
Translates to: LGRVFSTLLILP*KSIPCCSLAFW
Trigger: CCAGAAAGCCAGAGAGCAACAGGGAATAGACTTCCACGGCAAGATCAACAAAGTAGAAAACACTCTCCCCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037096.9
ENSMUST00000109580.2
CDS GCA 72 bp ACTTTGTTGATCTTGCCGTGGAAGTCTATTCCCTGTTaGTCTCTGGCTTTCTGGAGACGCAGAAGTTTCAAA +
Preference number: 6 (lower is better)
Translates to: TLLILPWKSIPC*SLAFWRRRSFK
Trigger: TTTGAAACTTCTGCGTCTCCAGAAAGCCAGAGAGCAACAGGGAATAGACTTCCACGGCAAGATCAACAAAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037096.9
ENSMUST00000109580.2
CDS CAA 72 bp CTCAATGATCTGATATTCCCGAAATCCCCTGAGGCCTaGACGGAACATCTTACACACTCGGTTCATCATGAT +
Preference number: 6 (lower is better)
Translates to: LNDLIFPKSPEA*TEHLTHSVHHD
Trigger: ATCATGATGAACCGAGTGTGTAAGATGTTCCGTCAAGGCCTCAGGGGATTTCGGGAATATCAGATCATTGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037096.9
CDS CAA 72 bp TACTTTGTTGATCTTGCCGTGGAAGTCTATTCCCTGTaGCTCTCTGGCTTTCTGGAGACGCAGAAGTTTCAA +
Preference number: 6 (lower is better)
Translates to: YFVDLAVEVYSL*LSGFLETQKFQ
Trigger: TTGAAACTTCTGCGTCTCCAGAAAGCCAGAGAGCAACAGGGAATAGACTTCCACGGCAAGATCAACAAAGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037096.9
ENSMUST00000109580.2
CDS GCA 72 bp AAATGGGATAGTGCTGCTTCACCTTCTTTTCAAGGCTaGACAGATCCAGGAACAAAGACTTGTGGTTGTAGA +
Preference number: 6 (lower is better)
Translates to: KWDSAASPSFQG*TDPGTKTCGCR
Trigger: TCTACAACCACAAGTCTTTGTTCCTGGATCTGTGCAGCCTTGAAAAGAAGGTGAAGCAGCACTATCCCATTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037096.9
ENSMUST00000109580.2
CDS CAA 90 bp AGTGTTTTCTACTTTGTTGATCTTGCCGTGGAAGTCTATTCCCTGTaGCTCTCTGGCTTTCTGGAGACGCAGAAGTTTCAAATACGTGAA +
Preference number: 6 (lower is better)
Translates to: SVFYFVDLAVEVYSL*LSGFLETQKFQIRE
Trigger: TTCACGTATTTGAAACTTCTGCGTCTCCAGAAAGCCAGAGAGCAACAGGGAATAGACTTCCACGGCAAGATCAACAAAGTAGAAAACACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037096.9
ENSMUST00000109580.2
CDS TCA 72 bp GTCATAAAACTTCTCTTTTCTTACTTGTATCAACTCTaGTCCCAAACTCAGAAGGATGAAGGGCCGGCAATC +
Preference number: 6 (lower is better)
Translates to: VIKLLFSYLYQL*SQTQKDEGPAI
Trigger: GATTGCCGGCCCTTCATCCTTCTGAGTTTGGGATCAGAGTTGATACAAGTAAGAAAAGAGAAGTTTTATGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037096.9
ENSMUST00000109580.2
CDS CAA 72 bp CATCGCTGGGATAGTCCACATCCATCTTTATTATCTTaGCTCTTGTCTCCTCGTCAACCATGTCATAAAACT +
Preference number: 6 (lower is better)
Translates to: HRWDSPHPSLLS*LLSPRQPCHKT
Trigger: AGTTTTATGACATGGTTGACGAGGAGACAAGAGCAAAGATAATAAAGATGGATGTGGACTATCCCAGCGATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037096.9
ENSMUST00000109580.2
CDS CAA 90 bp ACAGGTCTTCATCGCTGGGATAGTCCACATCCATCTTTATTATCTTaGCTCTTGTCTCCTCGTCAACCATGTCATAAAACTTCTCTTTTC +
Preference number: 6 (lower is better)
Translates to: TGLHRWDSPHPSLLS*LLSPRQPCHKTSLF
Trigger: GAAAAGAGAAGTTTTATGACATGGTTGACGAGGAGACAAGAGCAAAGATAATAAAGATGGATGTGGACTATCCCAGCGATGAAGACCTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037096.9
ENSMUST00000109580.2
CDS CAA 90 bp CTTCATCGCTGGGATAGTCCACATCCATCTTTATTATCTTTGCTCTaGTCTCCTCGTCAACCATGTCATAAAACTTCTCTTTTCTTACTT +
Preference number: 6 (lower is better)
Translates to: LHRWDSPHPSLLSLL*SPRQPCHKTSLFLL
Trigger: AAGTAAGAAAAGAGAAGTTTTATGACATGGTTGACGAGGAGACAAGAGCAAAGATAATAAAGATGGATGTGGACTATCCCAGCGATGAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037096.9
ENSMUST00000109580.2
CDS CAA 72 bp TGGGATAGTCCACATCCATCTTTATTATCTTTGCTCTaGTCTCCTCGTCAACCATGTCATAAAACTTCTCTT +
Preference number: 6 (lower is better)
Translates to: WDSPHPSLLSLL*SPRQPCHKTSL
Trigger: AAGAGAAGTTTTATGACATGGTTGACGAGGAGACAAGAGCAAAGATAATAAAGATGGATGTGGACTATCCCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037096.9
ENSMUST00000109580.2