RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CMTM6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032434

Ensembl transcript IDs: ENSMUST00000035007.10

Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GCCAGAGATCCCAGCCTAGGCTCTGCAGAGAAGCCTGCGGAGCTGTaGTCGCTTGAGCAGAAACCATCTGCCCGGAGGGAGACCCACAAG +
Preference number: 1 (lower is better)
Translates to: ARDPSLGSAEKPAEL*SLEQKPSARRETHK
Trigger: CTTGTGGGTCTCCCTCCGGGCAGATGGTTTCTGCTCAAGCGAGCACAGCTCCGCAGGCTTCTCTGCAGAGCCTAGGCTGGGATCTCTGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
3UTR TCA 90 bp TCCCAGCCTAGGCTCTGCAGAGAAGCCTGCGGAGCTGTGCTCGCTTaGGCAGAAACCATCTGCCCGGAGGGAGACCCACAAGTCTCTAGT +
Preference number: 1 (lower is better)
Translates to: SQPRLCREACGAVLA*AETICPEGDPQVSS
Trigger: ACTAGAGACTTGTGGGTCTCCCTCCGGGCAGATGGTTTCTGCTCAAGCGAGCACAGCTCCGCAGGCTTCTCTGCAGAGCCTAGGCTGGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
3UTR CCA 90 bp GATCCATCGCACCACTCCAAAGAGAAAGCCCAGCCTGGGAAACCTTaGCCAGTGCACAGAAGGCCTGGACGTGCTGGATCTCGCTCAAGC +
Preference number: 1 (lower is better)
Translates to: DPSHHSKEKAQPGKP*PVHRRPGRAGSRSS
Trigger: GCTTGAGCGAGATCCAGCACGTCCAGGCCTTCTGTGCACTGGCCAAGGTTTCCCAGGCTGGGCTTTCTCTTTGGAGTGGTGCGATGGATC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
3UTR CCA 90 bp CCGGAAACACGATCCATCGCACCACTCCAAAGAGAAAGCCCAGCCTaGGAAACCTTGGCCAGTGCACAGAAGGCCTGGACGTGCTGGATC +
Preference number: 1 (lower is better)
Translates to: PETRSIAPLQRESPA*ETLASAQKAWTCWI
Trigger: GATCCAGCACGTCCAGGCCTTCTGTGCACTGGCCAAGGTTTCCCAGGCTGGGCTTTCTCTTTGGAGTGGTGCGATGGATCGTGTTTCCGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
3UTR TCA 90 bp GCTGAGCCGCTGCTGTGCAGAGCCAGGCAGAGTGTCTGCCAATCATaGACAAGCCAAACACAGGTAGAGAGGCACCTACTACTGAGATGC +
Preference number: 1 (lower is better)
Translates to: AEPLLCRARQSVCQS*TSQTQVERHLLLRC
Trigger: GCATCTCAGTAGTAGGTGCCTCTCTACCTGTGTTTGGCTTGTTCATGATTGGCAGACACTCTGCCTGGCTCTGCACAGCAGCGGCTCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
3UTR GCA 90 bp GACAGGGCAGAAGCTGTGTGCCCAGATTCATCCACTTCCAAGAACTaGCACAGCCTCACTAGGAAACTGAAACCATCTCCTTCCACACAC +
Preference number: 1 (lower is better)
Translates to: DRAEAVCPDSSTSKN*HSLTRKLKPSPSTH
Trigger: GTGTGTGGAAGGAGATGGTTTCAGTTTCCTAGTGAGGCTGTGGCAGTTCTTGGAAGTGGATGAATCTGGGCACACAGCTTCTGCCCTGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
3UTR CCA 90 bp AGACATTGTCCTTTCTGTGCTGACAGTCTCTGGTCCCAGCTCTTCTaGAGGGTGTGTGTTGCCACAGTCTTTAACCCCATCTCCCTCCAT +
Preference number: 1 (lower is better)
Translates to: RHCPFCADSLWSQLF*RVCVATVFNPISLH
Trigger: ATGGAGGGAGATGGGGTTAAAGACTGTGGCAACACACACCCTCCAGAAGAGCTGGGACCAGAGACTGTCAGCACAGAAAGGACAATGTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
3UTR CCA 90 bp AGCCATGTGATTACACCCGCGGTGCGGGACAGTCTCTTCTCTCTTTaGTCTTTAGATAGACTATCAGCTCCCTCACTTTCCAGTGTTACA +
Preference number: 1 (lower is better)
Translates to: SHVITPAVRDSLFSL*SLDRLSAPSLSSVT
Trigger: TGTAACACTGGAAAGTGAGGGAGCTGATAGTCTATCTAAAGACCAAAGAGAGAAGAGACTGTCCCGCACCGCGGGTGTAATCACATGGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
3UTR-3UTR GCA 90 bp CCTTTCTGTGCTGACAGTCTCTGGTCCCAGCTCTTCTGGAGGGTGTGTGTTGCCGCTGAGCCGCTGCTGTaGAGAGCCAGGCAGAGTGTC +
Preference number: 2 (lower is better)
Translates to: PFCADSLWSQLFWRVCVAAEPLL*RARQSV
Trigger: GACACTCTGCCTGGCTCTGCACAGCAGCGGCTCAGC...GGCAACACACACCCTCCAGAAGAGCTGGGACCAGAGACTGTCAGCACAGAAAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
3UTR CAA 90 bp CGATCCATCGCACCACTCCAAAGAGAAAGCCCAGCCTGGGAAACCTaGGCCAGTGCACAGAAGGCCTGGACGTGCTGGATCTCGCTCAAG +
Preference number: 2 (lower is better)
Translates to: RSIAPLQRESPAWET*ASAQKAWTCWISLK
Trigger: CTTGAGCGAGATCCAGCACGTCCAGGCCTTCTGTGCACTGGCCAAGGTTTCCCAGGCTGGGCTTTCTCTTTGGAGTGGTGCGATGGATCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
3UTR-3UTR GCA 90 bp GCCCTCCAGCAGCAAGCGATCCTTCCAGAGTCCCAGGAGGCCTGCGGCCTCCCCCTTTCTGTTAGGCAATaGATGGCTCAGAAGGAATTA +
Preference number: 2 (lower is better)
Translates to: ALQQQAILPESQEACGLPLSVRQ*MAQKEL
Trigger: TAATTCCTTCTGAGCCATGCATTGCCTAACAGAAAG...GGGGAGGCCGCAGGCCTCCTGGGACTCTGGAAGGATCGCTTGCTGCTGGAGGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
3UTR-3UTR TCA 90 bp ATTCTTGGTTTCAAGAGCCTACTGTCCCCTCTCTGGAATGGCATGTCCAGTAAGGAGGGAACACGGACCTaGCACCTCTGCCTCAGACTC +
Preference number: 2 (lower is better)
Translates to: ILGFKSLLSPLWNGMSSKEGTRT*HLCLRL
Trigger: GAGTCTGAGGCAGAGGTGTCAGGTCCGTGTTCCCTC...CTTACTGGACATGCCATTCCAGAGAGGGGACAGTAGGCTCTTGAAACCAAGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
3UTR-3UTR TCA 90 bp ATTCTTGGTTTCAAGAGCCTACTGTCCCCTCTCTGGAATGGCATGTCCAGTAAGCAGCAGATCAGGCAGTaGGGCAGGGACAGGGCAGAA +
Preference number: 2 (lower is better)
Translates to: ILGFKSLLSPLWNGMSSKQQIRQ*GRDRAE
Trigger: TTCTGCCCTGTCCCTGCCTCACTGCCTGATCTGCTG...CTTACTGGACATGCCATTCCAGAGAGGGGACAGTAGGCTCTTGAAACCAAGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
3UTR CAA 90 bp TCTGTGCTGACAGTCTCTGGTCCCAGCTCTTCTGGAGGGTGTGTGTaGCCACAGTCTTTAACCCCATCTCCCTCCATAGAATGCAAAAGC +
Preference number: 2 (lower is better)
Translates to: SVLTVSGPSSSGGCV*PQSLTPSPSIECKS
Trigger: GCTTTTGCATTCTATGGAGGGAGATGGGGTTAAAGACTGTGGCAACACACACCCTCCAGAAGAGCTGGGACCAGAGACTGTCAGCACAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
3UTR-3UTR CCA 90 bp ATTCTTGGTTTCAAGAGCCTACTGTCCCCTCTCTGGAATGGCATGTCCAGTAAGTCAGGAAGGAGAATCTaGCGGGCCAGAGATCCCAGC +
Preference number: 2 (lower is better)
Translates to: ILGFKSLLSPLWNGMSSKSGRRI*RARDPS
Trigger: GCTGGGATCTCTGGCCCGCCAGATTCTCCTTCCTGA...CTTACTGGACATGCCATTCCAGAGAGGGGACAGTAGGCTCTTGAAACCAAGAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
3UTR-3UTR TCA 90 bp ATTCTTGGTTTCAAGAGCCTACTGTCCCCTCTCTGGAATGGCATGTCCAGTAAGTTATTACAAACCCTCTaGGCTTCCTGCTGGGGCTGC +
Preference number: 2 (lower is better)
Translates to: ILGFKSLLSPLWNGMSSKLLQTL*ASCWGC
Trigger: GCAGCCCCAGCAGGAAGCTCAGAGGGTTTGTAATAA...CTTACTGGACATGCCATTCCAGAGAGGGGACAGTAGGCTCTTGAAACCAAGAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
3UTR CAA 90 bp TCTTTCCTTGCTTCCAGATCTACAACAAACTCCCCAAGTGATGTGTaGCTGTCTAAAACAGCAGGTCTGACTAAGGGCCAAAGCCTACAA +
Preference number: 2 (lower is better)
Translates to: SFLASRSTTNSPSDV*LSKTAGLTKGQSLQ
Trigger: TTGTAGGCTTTGGCCCTTAGTCAGACCTGCTGTTTTAGACAGCAACACATCACTTGGGGAGTTTGTTGTAGATCTGGAAGCAAGGAAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
3UTR-3UTR TCA 90 bp GTTAAGGATCAGTTTCATGATCTCCAGAGCAGCTATGGTGACATCACCAGTATGCGTCCTATAGCAAAATaGCAGACATGCAATTCAAAG +
Preference number: 2 (lower is better)
Translates to: VKDQFHDLQSSYGDITSMRPIAK*QTCNSK
Trigger: CTTTGAATTGCATGTCTGTCATTTTGCTATAGGACG...CATACTGGTGATGTCACCATAGCTGCTCTGGAGATCATGAAACTGATCCTTAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
3UTR GCA 72 bp CCCAGCCTAGGCTCTGCAGAGAAGCCTGCGGAGCTGTaGTCGCTTGAGCAGAAACCATCTGCCCGGAGGGAG +
Preference number: 3 (lower is better)
Translates to: PSLGSAEKPAEL*SLEQKPSARRE
Trigger: CTCCCTCCGGGCAGATGGTTTCTGCTCAAGCGAGCACAGCTCCGCAGGCTTCTCTGCAGAGCCTAGGCTGGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
3UTR TCA 72 bp AGGCTCTGCAGAGAAGCCTGCGGAGCTGTGCTCGCTTaGGCAGAAACCATCTGCCCGGAGGGAGACCCACAA +
Preference number: 3 (lower is better)
Translates to: RLCREACGAVLA*AETICPEGDPQ
Trigger: TTGTGGGTCTCCCTCCGGGCAGATGGTTTCTGCTCAAGCGAGCACAGCTCCGCAGGCTTCTCTGCAGAGCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
3UTR CCA 72 bp CGATCCATCGCACCACTCCAAAGAGAAAGCCCAGCCTaGGAAACCTTGGCCAGTGCACAGAAGGCCTGGACG +
Preference number: 3 (lower is better)
Translates to: RSIAPLQRESPA*ETLASAQKAWT
Trigger: CGTCCAGGCCTTCTGTGCACTGGCCAAGGTTTCCCAGGCTGGGCTTTCTCTTTGGAGTGGTGCGATGGATCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
3UTR TCA 72 bp ACTCGCGACAGGTTCCAAGCATTATTACAAACCCTCTaGGCTTCCTGCTGGGGCTGCCACCCAGCCCAGCAC +
Preference number: 3 (lower is better)
Translates to: TRDRFQALLQTL*ASCWGCHPAQH
Trigger: GTGCTGGGCTGGGTGGCAGCCCCAGCAGGAAGCTCAGAGGGTTTGTAATAATGCTTGGAACCTGTCGCGAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
3UTR GCA 72 bp CCAAAGAGAAAGCCCAGCCTGGGAAACCTTGGCCAGTaGACAGAAGGCCTGGACGTGCTGGATCTCGCTCAA +
Preference number: 3 (lower is better)
Translates to: PKRKPSLGNLGQ*TEGLDVLDLAQ
Trigger: TTGAGCGAGATCCAGCACGTCCAGGCCTTCTGTGCACTGGCCAAGGTTTCCCAGGCTGGGCTTTCTCTTTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
3UTR TCA 72 bp GAGAAGGGACACACCTCTGGATGGCCTGGAGACGGCTaGCAATGGGAAGAGAACAGAGAGGAAGAGCGAGCA +
Preference number: 3 (lower is better)
Translates to: EKGHTSGWPGDG*QWEENREEERA
Trigger: TGCTCGCTCTTCCTCTCTGTTCTCTTCCCATTGTCAGCCGTCTCCAGGCCATCCAGAGGTGTGTCCCTTCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
3UTR CCA 72 bp GGGCTTCAGGGGTTTACATCTTCAAGACCTCTCCCCTaGAGAGAAAGAAACCCAAGCAGAGGCCTGTGGGAG +
Preference number: 3 (lower is better)
Translates to: GLQGFTSSRPLP*RERNPSRGLWE
Trigger: CTCCCACAGGCCTCTGCTTGGGTTTCTTTCTCTCCAGGGGAGAGGTCTTGAAGATGTAAACCCCTGAAGCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
3UTR CCA 72 bp AACCATCTCCTTCCACACACCAGGCACGCAAGACACTaGAAAGGACGGGGACTTTACAGTGAATCCCCGGAA +
Preference number: 3 (lower is better)
Translates to: NHLLPHTRHARH*KGRGLYSESPE
Trigger: TTCCGGGGATTCACTGTAAAGTCCCCGTCCTTTCCAGTGTCTTGCGTGCCTGGTGTGTGGAAGGAGATGGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
3UTR CCA 72 bp CCTTTCTGTGCTGACAGTCTCTGGTCCCAGCTCTTCTaGAGGGTGTGTGTTGCCACAGTCTTTAACCCCATC +
Preference number: 3 (lower is better)
Translates to: PFCADSLWSQLF*RVCVATVFNPI
Trigger: GATGGGGTTAAAGACTGTGGCAACACACACCCTCCAGAAGAGCTGGGACCAGAGACTGTCAGCACAGAAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
3UTR CCA 72 bp ATTACACCCGCGGTGCGGGACAGTCTCTTCTCTCTTTaGTCTTTAGATAGACTATCAGCTCCCTCACTTTCC +
Preference number: 3 (lower is better)
Translates to: ITPAVRDSLFSL*SLDRLSAPSLS
Trigger: GGAAAGTGAGGGAGCTGATAGTCTATCTAAAGACCAAAGAGAGAAGAGACTGTCCCGCACCGCGGGTGTAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
3UTR TCA 72 bp GAAGGTAAGCGTGGTGAGGGGCGTCCTATAGCAAAATaGCAGACATGCAATTCAAAGGACAGCAGTCCTCAT +
Preference number: 3 (lower is better)
Translates to: EGKRGEGRPIAK*QTCNSKDSSPH
Trigger: ATGAGGACTGCTGTCCTTTGAATTGCATGTCTGTCATTTTGCTATAGGACGCCCCTCACCACGCTTACCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
3UTR CCA 72 bp TCTATTCTTGGTTTCAAGAGCCTACTGTCCCCTCTCTaGAATGGCATGTCCAGTAAGGCAATGTTAAGGATC +
Preference number: 3 (lower is better)
Translates to: SILGFKSLLSPL*NGMSSKAMLRI
Trigger: GATCCTTAACATTGCCTTACTGGACATGCCATTCCAGAGAGGGGACAGTAGGCTCTTGAAACCAAGAATAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
3UTR CCA 72 bp TGCAATAGACTGGTTACTTTTGAACTTCTCTATTCTTaGTTTCAAGAGCCTACTGTCCCCTCTCTGGAATGG +
Preference number: 3 (lower is better)
Translates to: CNRLVTFELLYS*FQEPTVPSLEW
Trigger: CCATTCCAGAGAGGGGACAGTAGGCTCTTGAAACCAAGAATAGAGAAGTTCAAAAGTAACCAGTCTATTGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
CDS-3UTR TCA 90 bp TCCAGCAGCAAGCGATCCTTCCAGAGTCCCAGGAGGCCTGCGGCCTCCCCACACCAACCTCTTCACAGATaGAGGCCAGGAGAGACAGCA +
Preference number: 4 (lower is better)
Translates to: SSSKRSFQSPRRPAASPHQPLHR*RPGETA
Trigger: TGCTGTCTCTCCTGGCCTTCATCTGTGAAGAGGTTG...GTGTGGGGAGGCCGCAGGCCTCCTGGGACTCTGGAAGGATCGCTTGCTGCTGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
CDS-3UTR CCA 90 bp TCCAGCAGCAAGCGATCCTTCCAGAGTCCCAGGAGGCCTGCGGCCTCCCCACACGCTGAGGTCCCAGAATaGGTGGAGACAAAAATGATA +
Preference number: 4 (lower is better)
Translates to: SSSKRSFQSPRRPAASPHAEVPE*VETKMI
Trigger: TATCATTTTTGTCTCCACCCATTCTGGGACCTCAGC...GTGTGGGGAGGCCGCAGGCCTCCTGGGACTCTGGAAGGATCGCTTGCTGCTGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
CDS-3UTR GCA 90 bp GTCCTTTCTGTGCTGACAGTCTCTGGTCCCAGCTCTTCTGGAGGGTGTGTGTTGAGAGACAGCAGCAGCTaGAAGCCTTTGAGGATGCGC +
Preference number: 4 (lower is better)
Translates to: VLSVLTVSGPSSSGGCVLRDSSS*KPLRMR
Trigger: GCGCATCCTCAAAGGCTTGCAGCTGCTGCTGTCTCT...CAACACACACCCTCCAGAAGAGCTGGGACCAGAGACTGTCAGCACAGAAAGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
3UTR CAA 72 bp ACCATCTGCCCGGAGGGAGACCCACAAGTCTCTAGTTaGACGCCATCAACCCTGTTTGCACGGGTGAACACA +
Preference number: 4 (lower is better)
Translates to: TICPEGDPQVSS*TPSTLFARVNT
Trigger: TGTGTTCACCCGTGCAAACAGGGTTGATGGCGTCAAACTAGAGACTTGTGGGTCTCCCTCCGGGCAGATGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
3UTR CAA 72 bp ACAGTCTCTGGTCCCAGCTCTTCTGGAGGGTGTGTGTaGCCACAGTCTTTAACCCCATCTCCCTCCATAGAA +
Preference number: 4 (lower is better)
Translates to: TVSGPSSSGGCV*PQSLTPSPSIE
Trigger: TTCTATGGAGGGAGATGGGGTTAAAGACTGTGGCAACACACACCCTCCAGAAGAGCTGGGACCAGAGACTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
CDS-3UTR GCA 90 bp ACACCACCAGCAGTACTCACTAGCAGGGCTTCAGGGGTTTACATCTTCAAGACCGACAAAAATGATAGATaGCAGCAGGAACACACACCC +
Preference number: 4 (lower is better)
Translates to: TPPAVLTSRASGVYIFKTDKNDR*QQEHTP
Trigger: GGGTGTGTGTTCCTGCTGGCATCTATCATTTTTGTC...GGTCTTGAAGATGTAAACCCCTGAAGCCCTGCTAGTGAGTACTGCTGGTGGTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
3UTR CAA 72 bp GCTTCCAGATCTACAACAAACTCCCCAAGTGATGTGTaGCTGTCTAAAACAGCAGGTCTGACTAAGGGCCAA +
Preference number: 4 (lower is better)
Translates to: ASRSTTNSPSDV*LSKTAGLTKGQ
Trigger: TTGGCCCTTAGTCAGACCTGCTGTTTTAGACAGCAACACATCACTTGGGGAGTTTGTTGTAGATCTGGAAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
CDS-3UTR TCA 90 bp ACAGTAAAGGATCATAACATTAAGGAAAGACGCCTACACCAGCATCTTAAACACACCCAGTTCCCAGGGTaGTGTAAAAATCCGATGACT +
Preference number: 4 (lower is better)
Translates to: TVKDHNIKERRLHQHLKHTQFPG*CKNPMT
Trigger: AGTCATCGGATTTTTACATCACCCTGGGAACTGGGT...GTGTTTAAGATGCTGGTGTAGGCGTCTTTCCTTAATGTTATGATCCTTTACTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
CDS-3UTR TCA 90 bp TGTCTCAGGTATTTTGTTATAGAAACAGTCAGCAGACTAATAGTTGGTAACACTTGCAGCAATTTCAGCTaGGGTCCCAGAATGGGTGGA +
Preference number: 4 (lower is better)
Translates to: CLRYFVIETVSRLIVGNTCSNFS*GPRMGG
Trigger: TCCACCCATTCTGGGACCTCAGCTGAAATTGCTGCA...AGTGTTACCAACTATTAGTCTGCTGACTGTTTCTATAACAAAATACCTGAGACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
CDS-3UTR GCA 90 bp TGTCTCAGGTATTTTGTTATAGAAACAGTCAGCAGACTAATAGTTGGTAACACTGAGGGCTTCCACCTTTaGGTTGTTCTCGGGCTTTCT +
Preference number: 4 (lower is better)
Translates to: CLRYFVIETVSRLIVGNTEGFHL*VVLGLS
Trigger: AGAAAGCCCGAGAACAACGCAAAGGTGGAAGCCCTC...AGTGTTACCAACTATTAGTCTGCTGACTGTTTCTATAACAAAATACCTGAGACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
CDS-3UTR TCA 90 bp CATAACATTAAGGAAAGACGCCTACACCAGCATCTTAAACACTCATTAAATCTCGATGTAAAAATCCGATaGCTTGACTTTTCCAGTATC +
Preference number: 4 (lower is better)
Translates to: HNIKERRLHQHLKHSLNLDVKIR*LDFSSI
Trigger: GATACTGGAAAAGTCAAGTCATCGGATTTTTACATC...GAGATTTAATGAGTGTTTAAGATGCTGGTGTAGGCGTCTTTCCTTAATGTTATG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
CDS GCA 90 bp GATGCCAAGGGAGCCTGCCCAGGACGAAGTAGGCGGCCAGGCCGCTaGGCGCACCCCTGCCAGTGCCCGGGGCCGCCTCGGTGGTGGGAC +
Preference number: 5 (lower is better)
Translates to: DAKGACPGRSRRPGR*AHPCQCPGPPRWWD
Trigger: GTCCCACCACCGAGGCGGCCCCGGGCACTGGCAGGGGTGCGCGCAGCGGCCTGGCCGCCTACTTCGTCCTGGGCAGGCTCCCTTGGCATC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
CDS GCA 90 bp CCAGGACGAAGTAGGCGGCCAGGCCGCTGCGCGCACCCCTGCCAGTaGCCGGGGCCGCCTCGGTGGTGGGACTGTAGACCGCTCCGTTCT +
Preference number: 5 (lower is better)
Translates to: PGRSRRPGRCAHPCQ*PGPPRWWDCRPLRS
Trigger: AGAACGGAGCGGTCTACAGTCCCACCACCGAGGCGGCCCCGGGCACTGGCAGGGGTGCGCGCAGCGGCCTGGCCGCCTACTTCGTCCTGG
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
CDS TCA 90 bp CATGGAGCTTGCCAAGAAGCCAAACACAATTGCAGCAATTTCAGCTaGGGTCCCAGAATGGGTGGAGACAAAAATGATAGATGCCAGCAG +
Preference number: 5 (lower is better)
Translates to: HGACQEAKHNCSNFS*GPRMGGDKNDRCQQ
Trigger: CTGCTGGCATCTATCATTTTTGTCTCCACCCATTCTGGGACCTCAGCTGAAATTGCTGCAATTGTGTTTGGCTTCTTGGCAAGCTCCATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
CDS-3UTR CAA 90 bp GTGTGTGTTGCCACAGTCTTTAACCCCATCTCCCTCCATAGAATGCAAAAGCCAGTAGGAACATGGAGCTaGCCAAGAAGCCAAACACAA +
Preference number: 5 (lower is better)
Translates to: VCVATVFNPISLHRMQKPVGTWS*PRSQTQ
Trigger: TTGTGTTTGGCTTCTTGGCAAGCTCCATGTTCCTAC...TGGCTTTTGCATTCTATGGAGGGAGATGGGGTTAAAGACTGTGGCAACACACAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
CDS CCA 90 bp AAGAAGCCAAACACAATTGCAGCAATTTCAGCTGAGGTCCCAGAATaGGTGGAGACAAAAATGATAGATGCCAGCAGGAACACACACCCA +
Preference number: 5 (lower is better)
Translates to: KKPNTIAAISAEVPE*VETKMIDASRNTHP
Trigger: TGGGTGTGTGTTCCTGCTGGCATCTATCATTTTTGTCTCCACCCATTCTGGGACCTCAGCTGAAATTGCTGCAATTGTGTTTGGCTTCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
CDS GCA 72 bp GGAGCCTGCCCAGGACGAAGTAGGCGGCCAGGCCGCTaGGCGCACCCCTGCCAGTGCCCGGGGCCGCCTCGG +
Preference number: 6 (lower is better)
Translates to: GACPGRSRRPGR*AHPCQCPGPPR
Trigger: CCGAGGCGGCCCCGGGCACTGGCAGGGGTGCGCGCAGCGGCCTGGCCGCCTACTTCGTCCTGGGCAGGCTCC
79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
CDS CAA 72 bp GCGTTCAGTGGTTCGGTGAGGGCTTCCACCTTTGCGTaGTTCTCGGGCTTTCTCAGCGGGCTCTCCCGCAGC +
Preference number: 6 (lower is better)
Translates to: AFSGSVRASTFA*FSGFLSGLSRS
Trigger: GCTGCGGGAGAGCCCGCTGAGAAAGCCCGAGAACAACGCAAAGGTGGAAGCCCTCACCGAACCACTGAACGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
CDS GCA 72 bp TTAAGCGTTCAGTGGTTCGGTGAGGGCTTCCACCTTTaGGTTGTTCTCGGGCTTTCTCAGCGGGCTCTCCCG +
Preference number: 6 (lower is better)
Translates to: LSVQWFGEGFHL*VVLGLSQRALP
Trigger: CGGGAGAGCCCGCTGAGAAAGCCCGAGAACAACGCAAAGGTGGAAGCCCTCACCGAACCACTGAACGCTTAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
CDS TCA 72 bp TTCTCAGCGGGCTCTCCCGCAGCTTCTCACACAGCATaGCAACGAAGTCCAGTAGGAACATGGAGCTTGCCA +
Preference number: 6 (lower is better)
Translates to: FSAGSPAASHTA*QRSPVGTWSLP
Trigger: TGGCAAGCTCCATGTTCCTACTGGACTTCGTTGTCATGCTGTGTGAGAAGCTGCGGGAGAGCCCGCTGAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
CDS GCA 72 bp TCCGATGACTTGACTTTTCCAGTATCCACTCTGTCGTaGACTGGGGTGCAGTACACGATCAGCAGGAGGAGG +
Preference number: 6 (lower is better)
Translates to: SDDLTFPVSTLS*TGVQYTISRRR
Trigger: CCTCCTCCTGCTGATCGTGTACTGCACCCCAGTGCACGACAGAGTGGATACTGGAAAAGTCAAGTCATCGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10
CDS TCA 72 bp CACACACCCAGTTCCCAGGGTGATGTAAAAATCCGATaGCTTGACTTTTCCAGTATCCACTCTGTCGTGCAC +
Preference number: 6 (lower is better)
Translates to: HTPSSQGDVKIR*LDFSSIHSVVH
Trigger: GTGCACGACAGAGTGGATACTGGAAAAGTCAAGTCATCGGATTTTTACATCACCCTGGGAACTGGGTGTGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035007.10