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Pregenerated sensors for CMTM5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000040759

Ensembl transcript IDs: ENSMUST00000037814.8, ENSMUST00000227441.2

Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GCAACAACCTGCCCCAGCCTCCAGAACTTCACCAGTTCCCACAGGTaGCTGGGACTTCTCAAGCGCACATCTCTGAAAACGTGGAATATA +
Preference number: 1 (lower is better)
Translates to: ATTCPSLQNFTSSHR*LGLLKRTSLKTWNI
Trigger: TATATTCCACGTTTTCAGAGATGTGCGCTTGAGAAGTCCCAGGCACCTGTGGGAACTGGTGAAGTTCTGGAGGCTGGGGCAGGTTGTTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037814.8
3UTR-3UTR CCA 90 bp AACTTCACCAGTTCCCACAGGTGCCTGGGACTTCTCAAGCGCACATCTCTGAAACCTTGTGTCTGGTCGTaGGAGCCAGGTAACCCTGGA +
Preference number: 2 (lower is better)
Translates to: NFTSSHRCLGLLKRTSLKPCVWS*EPGNPG
Trigger: TCCAGGGTTACCTGGCTCCCACGACCAGACACAAGG...TTTCAGAGATGTGCGCTTGAGAAGTCCCAGGCACCTGTGGGAACTGGTGAAGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037814.8
CDS-3UTR TCA 90 bp CCAGCAACAACCTGCCCCAGCCTCCAGAACTTCACCAGTTCCCACAGGTGCCTGCCAGACAAGGCCAGTTaGGCCTATCGAAGCGCTGGT +
Preference number: 4 (lower is better)
Translates to: PATTCPSLQNFTSSHRCLPDKAS*AYRSAG
Trigger: ACCAGCGCTTCGATAGGCTCAACTGGCCTTGTCTGG...CAGGCACCTGTGGGAACTGGTGAAGTTCTGGAGGCTGGGGCAGGTTGTTGCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037814.8
CDS-3UTR CCA 90 bp AGCCTCCAGAACTTCACCAGTTCCCACAGGTGCCTGGGACTTCTCAAGCGCACATCCACTCCGAAGCCCTaGAGCCCTGCAGCTGCTCCT +
Preference number: 4 (lower is better)
Translates to: SLQNFTSSHRCLGLLKRTSTPKP*SPAAAP
Trigger: AGGAGCAGCTGCAGGGCTCCAGGGCTTCGGAGTGGA...TGTGCGCTTGAGAAGTCCCAGGCACCTGTGGGAACTGGTGAAGTTCTGGAGGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037814.8
CDS-3UTR CCA 90 bp GCAACAACCTGCCCCAGCCTCCAGAACTTCACCAGTTCCCACAGGTGCCTGGGAGCTGGTAGTACTGCGTaGCGCAGAGGAAGAGGAAGG +
Preference number: 4 (lower is better)
Translates to: ATTCPSLQNFTSSHRCLGAGSTA*RRGRGR
Trigger: CCTTCCTCTTCCTCTGCGCCACGCAGTACTACCAGC...TCCCAGGCACCTGTGGGAACTGGTGAAGTTCTGGAGGCTGGGGCAGGTTGTTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037814.8
CDS-3UTR TCA 90 bp AACAACCTGCCCCAGCCTCCAGAACTTCACCAGTTCCCACAGGTGCCTGGGACTCCAGCAGGATGCCTTTaGGGGAAGACAGGAAGGTCT +
Preference number: 4 (lower is better)
Translates to: NNLPQPPELHQFPQVPGTPAGCL*GKTGRS
Trigger: AGACCTTCCTGTCTTCCCTCAAAGGCATCCTGCTGG...AGTCCCAGGCACCTGTGGGAACTGGTGAAGTTCTGGAGGCTGGGGCAGGTTGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037814.8
CDS-3UTR TCA 90 bp GCCCCAGCCTCCAGAACTTCACCAGTTCCCACAGGTGCCTGGGACTTCTCAAGCAGACGGAGACCAGGATaGTGCCAAAAACAAAAGCAG +
Preference number: 4 (lower is better)
Translates to: APASRTSPVPTGAWDFSSRRRPG*CQKQKQ
Trigger: CTGCTTTTGTTTTTGGCATCATCCTGGTCTCCGTCT...GCTTGAGAAGTCCCAGGCACCTGTGGGAACTGGTGAAGTTCTGGAGGCTGGGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000037814.8
CDS-3UTR CCA 90 bp AACTTCACCAGTTCCCACAGGTGCCTGGGACTTCTCAAGCGCACATCTCTGAAAAAACAAAAGCAGCAATaGCAGCTCCCTCCCTCGAGG +
Preference number: 4 (lower is better)
Translates to: NFTSSHRCLGLLKRTSLKKQKQQ*QLPPSR
Trigger: CCTCGAGGGAGGGAGCTGCCATTGCTGCTTTTGTTT...TTTCAGAGATGTGCGCTTGAGAAGTCCCAGGCACCTGTGGGAACTGGTGAAGTT
52% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000037814.8
CDS-3UTR TCA 90 bp CACCAGTTCCCACAGGTGCCTGGGACTTCTCAAGCGCACATCTCTGAAAACGTGCAGTTCGGTAGATCTTaGATGCATCATAGGCAAAGA +
Preference number: 4 (lower is better)
Translates to: HQFPQVPGTSQAHISENVQFGRS*MHHRQR
Trigger: TCTTTGCCTATGATGCATTCAAGATCTACCGAACTG...CACGTTTTCAGAGATGTGCGCTTGAGAAGTCCCAGGCACCTGTGGGAACTGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037814.8
CDS GCA 90 bp GAGGGAAGACAGGAAGGTCTTGTCCACTCCGAAGCCCTGGAGCCCTaGAGCTGCTCCTTCCTCTGGGGGCCGTTCCCGGCGATCCCAAGC +
Preference number: 5 (lower is better)
Translates to: EGRQEGLVHSEALEP*SCSFLWGPFPAIPS
Trigger: GCTTGGGATCGCCGGGAACGGCCCCCAGAGGAAGGAGCAGCTGCAGGGCTCCAGGGCTTCGGAGTGGACAAGACCTTCCTGTCTTCCCTC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037814.8
ENSMUST00000227441.2
CDS GCA 90 bp AGACAGGAAGGTCTTGTCCACTCCGAAGCCCTGGAGCCCTGCAGCTaGTCCTTCCTCTGGGGGCCGTTCCCGGCGATCCCAAGCACTGAA +
Preference number: 5 (lower is better)
Translates to: RQEGLVHSEALEPCS*SFLWGPFPAIPSTE
Trigger: TTCAGTGCTTGGGATCGCCGGGAACGGCCCCCAGAGGAAGGAGCAGCTGCAGGGCTCCAGGGCTTCGGAGTGGACAAGACCTTCCTGTCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037814.8
ENSMUST00000227441.2
CDS CCA 90 bp ATGCCTTTGAGGGAAGACAGGAAGGTCTTGTCCACTCCGAAGCCCTaGAGCCCTGCAGCTGCTCCTTCCTCTGGGGGCCGTTCCCGGCGA +
Preference number: 5 (lower is better)
Translates to: MPLREDRKVLSTPKP*SPAAAPSSGGRSRR
Trigger: TCGCCGGGAACGGCCCCCAGAGGAAGGAGCAGCTGCAGGGCTCCAGGGCTTCGGAGTGGACAAGACCTTCCTGTCTTCCCTCAAAGGCAT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037814.8
ENSMUST00000227441.2
CDS-3UTR CAA 90 bp GGGAGTAACTTGGAGGCCCAGCAACAACCTGCCCCAGCCTCCAGAACTTCACCAGAAGACAGGAAGGTCTaGTCCACTCCGAAGCCCTGG +
Preference number: 5 (lower is better)
Translates to: GSNLEAQQQPAPASRTSPEDRKV*STPKPW
Trigger: CCAGGGCTTCGGAGTGGACAAGACCTTCCTGTCTTC...TGGTGAAGTTCTGGAGGCTGGGGCAGGTTGTTGCTGGGCCTCCAAGTTACTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037814.8
CDS-3UTR CAA 90 bp CAGAACTTCACCAGTTCCCACAGGTGCCTGGGACTTCTCAAGCGCACATCTCTGTCCAGACAAGGCCAGTaGAGCCTATCGAAGCGCTGG +
Preference number: 5 (lower is better)
Translates to: QNFTSSHRCLGLLKRTSLSRQGQ*SLSKRW
Trigger: CCAGCGCTTCGATAGGCTCAACTGGCCTTGTCTGGA...CAGAGATGTGCGCTTGAGAAGTCCCAGGCACCTGTGGGAACTGGTGAAGTTCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037814.8
CDS GCA 90 bp CCCCTCAGTGGTACTGGGCATCAGCTCAGTTCGGTAGATCTTGAATaGATCATAGGCAAAGACGGAGACCAGGATGATGCCAAAAACAAA +
Preference number: 5 (lower is better)
Translates to: PLSGTGHQLSSVDLE*IIGKDGDQDDAKNK
Trigger: TTTGTTTTTGGCATCATCCTGGTCTCCGTCTTTGCCTATGATGCATTCAAGATCTACCGAACTGAGCTGATGCCCAGTACCACTGAGGGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037814.8
ENSMUST00000227441.2
CDS CAA 90 bp CTGAGACACCGGAGGAAGTCCAGCTCAGTTTCCAGCAGGATGCCTTaGAGGGAAGACAGGAAGGTCTTGTCCACTCCGAAGCCCTGGAGC +
Preference number: 6 (lower is better)
Translates to: LRHRRKSSSVSSRMP*REDRKVLSTPKPWS
Trigger: GCTCCAGGGCTTCGGAGTGGACAAGACCTTCCTGTCTTCCCTCAAAGGCATCCTGCTGGAAACTGAGCTGGACTTCCTCCGGTGTCTCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227441.2
CDS TCA 72 bp AGGTCAGGGCCAGCTCAGTTTCCAGCAGGATGCCTTTaGGGGAAGACAGGAAGGTCTTGTCCACTCCGAAGC +
Preference number: 6 (lower is better)
Translates to: RSGPAQFPAGCL*GKTGRSCPLRS
Trigger: GCTTCGGAGTGGACAAGACCTTCCTGTCTTCCCTCAAAGGCATCCTGCTGGAAACTGAGCTGGCCCTGACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037814.8
CDS CAA 90 bp AAGATGATGAAGGTCAGGGCCAGCTCAGTTTCCAGCAGGATGCCTTaGAGGGAAGACAGGAAGGTCTTGTCCACTCCGAAGCCCTGGAGC +
Preference number: 6 (lower is better)
Translates to: KMMKVRASSVSSRMP*REDRKVLSTPKPWS
Trigger: GCTCCAGGGCTTCGGAGTGGACAAGACCTTCCTGTCTTCCCTCAAAGGCATCCTGCTGGAAACTGAGCTGGCCCTGACCTTCATCATCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037814.8
CDS CAA 72 bp AAGGTCAGGGCCAGCTCAGTTTCCAGCAGGATGCCTTaGAGGGAAGACAGGAAGGTCTTGTCCACTCCGAAG +
Preference number: 6 (lower is better)
Translates to: KVRASSVSSRMP*REDRKVLSTPK
Trigger: CTTCGGAGTGGACAAGACCTTCCTGTCTTCCCTCAAAGGCATCCTGCTGGAAACTGAGCTGGCCCTGACCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037814.8
CDS GCA 72 bp GGTACTGGGCATCAGCTCAGTTCGGTAGATCTTGAATaGATCATAGGCAAAGACGGAGACCAGGATGATGCC +
Preference number: 6 (lower is better)
Translates to: GTGHQLSSVDLE*IIGKDGDQDDA
Trigger: GGCATCATCCTGGTCTCCGTCTTTGCCTATGATGCATTCAAGATCTACCGAACTGAGCTGATGCCCAGTACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037814.8
ENSMUST00000227441.2