RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CMTM4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000096188

Ensembl transcript IDs: ENSMUST00000179802.2

Found 180 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TTAGTGGAGGAAGGCAGCGTCCGGCAGCATCGGGCAGGCCCGCCCTaGCCTGCCCTGGGCTGGGGTGACCATGAGTCGTCCGGCAGCATC +
Preference number: 1 (lower is better)
Translates to: LVEEGSVRQHRAGPP*PALGWGDHESSGSI
Trigger: GATGCTGCCGGACGACTCATGGTCACCCCAGCCCAGGGCAGGGCAGGGCGGGCCTGCCCGATGCTGCCGGACGCTGCCTTCCTCCACTAA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR GCA 90 bp GCCGCGGTGCACGGGGAGCACCTCCTCAGCTCTCCTCGGCAGCCCTaGCACCCACTTCTGGGTTATGAACTACAAAGGACACTGCTCAGG +
Preference number: 1 (lower is better)
Translates to: AAVHGEHLLSSPRQP*HPLLGYELQRTLLR
Trigger: CCTGAGCAGTGTCCTTTGTAGTTCATAACCCAGAAGTGGGTGGCAGGGCTGCCGAGGAGAGCTGAGGAGGTGCTCCCCGTGCACCGCGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR GCA 90 bp TCCTGTGCCCTGGCTTTCCCTAGCCCTCCACAGCACAGGACCTACTaGACTCAGGCTACCCAGAAACCCACCAGCGGCAGCCACAGTGTC +
Preference number: 1 (lower is better)
Translates to: SCALAFPSPPQHRTY*TQATQKPTSGSHSV
Trigger: GACACTGTGGCTGCCGCTGGTGGGTTTCTGGGTAGCCTGAGTGCAGTAGGTCCTGTGCTGTGGAGGGCTAGGGAAAGCCAGGGCACAGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR CCA 90 bp CCCAGAAACCCACCAGCGGCAGCCACAGTGTCACCTAAATCCAAGTaGGGCAAATCCCAGAGCAAGTCTGGGGTGCTGCCAGGACACAGC +
Preference number: 1 (lower is better)
Translates to: PRNPPAAATVSPKSK*GKSQSKSGVLPGHS
Trigger: GCTGTGTCCTGGCAGCACCCCAGACTTGCTCTGGGATTTGCCCCACTTGGATTTAGGTGACACTGTGGCTGCCGCTGGTGGGTTTCTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR TCA 90 bp CTTAGCCTATCTATCCTAGGAGACAGGGCAGACAACAGCCGGGACTaGCTGGCTAGGGTGGGAGGGCCAGGAGCCAAATGCAAGCGCTCA +
Preference number: 1 (lower is better)
Translates to: LSLSILGDRADNSRD*LARVGGPGAKCKRS
Trigger: TGAGCGCTTGCATTTGGCTCCTGGCCCTCCCACCCTAGCCAGTCAGTCCCGGCTGTTGTCTGCCCTGTCTCCTAGGATAGATAGGCTAAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR CCA 90 bp TGTGGACTCCCGCGCCCTGCTGTGGGGTTTGACAATAGCCACTCTTaGCCATCCAGCCTTCCAACACTGCTCTTCCCTGACCGATGCAGA +
Preference number: 1 (lower is better)
Translates to: CGLPRPAVGFDNSHS*PSSLPTLLFPDRCR
Trigger: TCTGCATCGGTCAGGGAAGAGCAGTGTTGGAAGGCTGGATGGCCAAGAGTGGCTATTGTCAAACCCCACAGCAGGGCGCGGGAGTCCACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR CCA 90 bp GTTCCAGGACTTTTGATCATAGAGAAGACACTCGGGTGCCCAGAATaGCAGCAGTGCCCCGTGGAACATCCGTGGGAGGACGTGTCCTGG +
Preference number: 1 (lower is better)
Translates to: VPGLLIIEKTLGCPE*QQCPVEHPWEDVSW
Trigger: CCAGGACACGTCCTCCCACGGATGTTCCACGGGGCACTGCTGCCATTCTGGGCACCCGAGTGTCTTCTCTATGATCAAAAGTCCTGGAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR CCA 90 bp AGACACAGGCTGACCCTATTTCCTGTGGACTCCCGCGCCCTGCTGTaGGGTTTGACAATAGCCACTCTTGGCCATCCAGCCTTCCAACAC +
Preference number: 1 (lower is better)
Translates to: RHRLTLFPVDSRALL*GLTIATLGHPAFQH
Trigger: GTGTTGGAAGGCTGGATGGCCAAGAGTGGCTATTGTCAAACCCCACAGCAGGGCGCGGGAGTCCACAGGAAATAGGGTCAGCCTGTGTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR CCA 90 bp TGCAGGGTCAGGAAAACAGAACGGTGGCTAGGTTATCCTGTGCCCTaGCTTTCCCTAGCCCTCCACAGCACAGGACCTACTGCACTCAGG +
Preference number: 1 (lower is better)
Translates to: CRVRKTERWLGYPVP*LSLALHSTGPTALR
Trigger: CCTGAGTGCAGTAGGTCCTGTGCTGTGGAGGGCTAGGGAAAGCCAGGGCACAGGATAACCTAGCCACCGTTCTGTTTTCCTGACCCTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR CCA 90 bp ACACTCGGGTGCCCAGAATGGCAGCAGTGCCCCGTGGAACATCCGTaGGAGGACGTGTCCTGGTGCAGATTCAAGTATTCTCAAATCCTA +
Preference number: 1 (lower is better)
Translates to: TLGCPEWQQCPVEHP*EDVSWCRFKYSQIL
Trigger: TAGGATTTGAGAATACTTGAATCTGCACCAGGACACGTCCTCCCACGGATGTTCCACGGGGCACTGCTGCCATTCTGGGCACCCGAGTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR GCA 90 bp GGCAGCCCTGCCACCCACTTCTGGGTTATGAACTACAAAGGACACTaGTCAGGTTGTGAACGGTCCTTAGGACATAGTGGGGGCACTGTA +
Preference number: 1 (lower is better)
Translates to: GSPATHFWVMNYKGH*SGCERSLGHSGGTV
Trigger: TACAGTGCCCCCACTATGTCCTAAGGACCGTTCACAACCTGAGCAGTGTCCTTTGTAGTTCATAACCCAGAAGTGGGTGGCAGGGCTGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR CCA 90 bp AAGCATGGGACTTTTGTGTGCTCTGAACACAGATGCTGTCATCACTaGCACCACCTCCATCACTACAAGGATGGACACAAGTCTCCACGC +
Preference number: 1 (lower is better)
Translates to: KHGTFVCSEHRCCHH*HHLHHYKDGHKSPR
Trigger: GCGTGGAGACTTGTGTCCATCCTTGTAGTGATGGAGGTGGTGCCAGTGATGACAGCATCTGTGTTCAGAGCACACAAAAGTCCCATGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR GCA 90 bp TGGCAGCAGTGCCCCGTGGAACATCCGTGGGAGGACGTGTCCTGGTaGAGATTCAAGTATTCTCAAATCCTAGATAAACTGACTCAGAAT +
Preference number: 1 (lower is better)
Translates to: WQQCPVEHPWEDVSW*RFKYSQILDKLTQN
Trigger: ATTCTGAGTCAGTTTATCTAGGATTTGAGAATACTTGAATCTGCACCAGGACACGTCCTCCCACGGATGTTCCACGGGGCACTGCTGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR GCA 90 bp AAAAAGACAGTTCGGCAGGAGCACACTAAGCATGGGACTTTTGTGTaGTCTGAACACAGATGCTGTCATCACTGGCACCACCTCCATCAC +
Preference number: 1 (lower is better)
Translates to: KKTVRQEHTKHGTFV*SEHRCCHHWHHLHH
Trigger: GTGATGGAGGTGGTGCCAGTGATGACAGCATCTGTGTTCAGAGCACACAAAAGTCCCATGCTTAGTGTGCTCCTGCCGAACTGTCTTTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR CCA 90 bp TTACCCTCTGAGCCTTTGGCAGGGAAGGTAGAGAAGACTGGTACCTaGCATTCAGTCGAGATCAACAGGGCCAAAATACACTTTCTCCGA +
Preference number: 1 (lower is better)
Translates to: LPSEPLAGKVEKTGT*HSVEINRAKIHFLR
Trigger: TCGGAGAAAGTGTATTTTGGCCCTGTTGATCTCGACTGAATGCCAGGTACCAGTCTTCTCTACCTTCCCTGCCAAAGGCTCAGAGGGTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR TCA 90 bp CTGTACCACCACACTATCCTCCTGCCAGCCACATCTTCTCCTTGGTaGGGCGACCCACAAAATCTTAGAGCTACAAGATCTGTAAACATC +
Preference number: 1 (lower is better)
Translates to: LYHHTILLPATSSPW*GDPQNLRATRSVNI
Trigger: GATGTTTACAGATCTTGTAGCTCTAAGATTTTGTGGGTCGCCTCACCAAGGAGAAGATGTGGCTGGCAGGAGGATAGTGTGGTGGTACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR GCA 90 bp CTAGCTGGGTCATCCTCTGAACATGGGAACATGCCAACCTGGAACTaGAGCAGAACTGGATTATACTGGATATTGGTTTTAGGGAGCCAG +
Preference number: 1 (lower is better)
Translates to: LAGSSSEHGNMPTWN*SRTGLYWILVLGSQ
Trigger: CTGGCTCCCTAAAACCAATATCCAGTATAATCCAGTTCTGCTGCAGTTCCAGGTTGGCATGTTCCCATGTTCAGAGGATGACCCAGCTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR GCA 90 bp TACACTTTCTCCGAAGACAAGTTAATATCCATCAAGACTACCAAGTaGCAGAGGGTGTCAACCCCATGTCTCCACGAACACACCACATGT +
Preference number: 1 (lower is better)
Translates to: YTFSEDKLISIKTTK*QRVSTPCLHEHTTC
Trigger: ACATGTGGTGTGTTCGTGGAGACATGGGGTTGACACCCTCTGGCACTTGGTAGTCTTGATGGATATTAACTTGTCTTCGGAGAAAGTGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR CCA 90 bp CTAGCCAATTCTTTAAGCCCTGAATCACTGTACCCTTCAGTGCCATaGAAAGGGGACAGGGTTCTGGAACTTGCTAAATCAGTTCTGAAA +
Preference number: 1 (lower is better)
Translates to: LANSLSPESLYPSVP*KGDRVLELAKSVLK
Trigger: TTTCAGAACTGATTTAGCAAGTTCCAGAACCCTGTCCCCTTTCCATGGCACTGAAGGGTACAGTGATTCAGGGCTTAAAGAATTGGCTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR TCA 90 bp GACACAATACACTGTTCAAGAACCTATGGTCTAAATTTGATTCTGTaGGATGGCTTTGAACTCAATGGGCTTGGGTCCCTCCACCCCTTT +
Preference number: 1 (lower is better)
Translates to: DTIHCSRTYGLNLIL*DGFELNGLGSLHPF
Trigger: AAAGGGGTGGAGGGACCCAAGCCCATTGAGTTCAAAGCCATCTCACAGAATCAAATTTAGACCATAGGTTCTTGAACAGTGTATTGTGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR TCA 90 bp CAGATCTGTCAGTCACTGGGCCACTCTAGGCAACCTTTCCCAAAGTaGATTTTTACCAAACAGGACAAAATTCAGCTGGTTCACACAAAA +
Preference number: 1 (lower is better)
Translates to: QICQSLGHSRQPFPK*IFTKQDKIQLVHTK
Trigger: TTTTGTGTGAACCAGCTGAATTTTGTCCTGTTTGGTAAAAATTCACTTTGGGAAAGGTTGCCTAGAGTGGCCCAGTGACTGACAGATCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR TCA 90 bp TGTTATCTGTTAACTAAATGTACATCCCCGCCCCAATTCCATGATTaGCAAGAGTGCTTATGTGACACATGGAAGGCACCAAAGGTGAAG +
Preference number: 1 (lower is better)
Translates to: CYLLTKCTSPPQFHD*QECLCDTWKAPKVK
Trigger: CTTCACCTTTGGTGCCTTCCATGTGTCACATAAGCACTCTTGTCAATCATGGAATTGGGGCGGGGATGTACATTTAGTTAACAGATAACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR TCA 90 bp CGGATACAGATGGAGTCTTTGCAACCCCATTTAAAGGGAATTCTCTaGGGCAGAAAGCCTGATTTTGATTATATAGGTATACCAACCAAG +
Preference number: 1 (lower is better)
Translates to: RIQMESLQPHLKGIL*GRKPDFDYIGIPTK
Trigger: CTTGGTTGGTATACCTATATAATCAAAATCAGGCTTTCTGCCTCAGAGAATTCCCTTTAAATGGGGTTGCAAAGACTCCATCTGTATCCG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR GCA 90 bp AATAGTAACCAAGATATAAATATTACAATGATTCTGTCACTAAGATaGAAATTGCTCTCAAGTCTCTTAGGCCCTAAGACACCACCACAT +
Preference number: 1 (lower is better)
Translates to: NSNQDINITMILSLR*KLLSSLLGPKTPPH
Trigger: ATGTGGTGGTGTCTTAGGGCCTAAGAGACTTGAGAGCAATTTGCATCTTAGTGACAGAATCATTGTAATATTTATATCTTGGTTACTATT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR-3UTR CCA 90 bp AGGTTGGAAAAGCACAATGTGCACAATGTGCCGACTCACTCAACTCGGCCAGCAGGCAGCAGTGCCCCGTaGAACATCCGTGGGAGGACG +
Preference number: 2 (lower is better)
Translates to: RLEKHNVHNVPTHSTRPAGSSAP*NIRGRT
Trigger: CGTCCTCCCACGGATGTTCCACGGGGCACTGCTGCC...TGCTGGCCGAGTTGAGTGAGTCGGCACATTGTGCACATTGTGCTTTTCCAACCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR CAA 90 bp CTGCTTCCTCTGCCGCTTTCACCTGAGAAGGTAAAAGTGCTGGAATaGCAACTCAGCCTCAGGGTGTGCATGTTAGGTGGGCAGGGCCCC +
Preference number: 2 (lower is better)
Translates to: LLPLPLSPEKVKVLE*QLSLRVCMLGGQGP
Trigger: GGGGCCCTGCCCACCTAACATGCACACCCTGAGGCTGAGTTGCAATTCCAGCACTTTTACCTTCTCAGGTGAAAGCGGCAGAGGAAGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR-3UTR GCA 90 bp GTAAGTCTTCCTGCCAAGAGTCCTAGAAGGGCCCTAGGGTCCCTCTCAGTGAGAGAGAAGACACTCGGGTaGCCAGAATGGCAGCAGTGC +
Preference number: 2 (lower is better)
Translates to: VSLPAKSPRRALGSLSVREKTLG*PEWQQC
Trigger: GCACTGCTGCCATTCTGGGCACCCGAGTGTCTTCTC...TCTCACTGAGAGGGACCCTAGGGCCCTTCTAGGACTCTTGGCAGGAAGACTTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR-3UTR CCA 90 bp TTCTTGACTGCAGTCTTACCCTCTGAGCCTTTGGCAGGGAAGGTAGAGAAGACTCTCGGGTGCCCAGAATaGCAGCAGTGCCCCGTGGAA +
Preference number: 2 (lower is better)
Translates to: FLTAVLPSEPLAGKVEKTLGCPE*QQCPVE
Trigger: TTCCACGGGGCACTGCTGCCATTCTGGGCACCCGAG...AGTCTTCTCTACCTTCCCTGCCAAAGGCTCAGAGGGTAAGACTGCAGTCAAGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR-3UTR TCA 90 bp TTCTTGACTGCAGTCTTACCCTCTGAGCCTTTGGCAGGGAAGGTAGAGAAGACTCCCCATCCCGGAAGTTaGGTATGGACCACAGGAAGG +
Preference number: 2 (lower is better)
Translates to: FLTAVLPSEPLAGKVEKTPHPGS*VWTTGR
Trigger: CCTTCCTGTGGTCCATACTCAACTTCCGGGATGGGG...AGTCTTCTCTACCTTCCCTGCCAAAGGCTCAGAGGGTAAGACTGCAGTCAAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR-3UTR GCA 90 bp ACATTGTCTCCCAAGAGTGCCACTATTAAATGGAGTGGCAGTGGCCAGTCCTGGGTGGGAAGAACACAGTaGAAGGGACAGGACTTGCCA +
Preference number: 2 (lower is better)
Translates to: TLSPKSATIKWSGSGQSWVGRTQ*KGQDLP
Trigger: TGGCAAGTCCTGTCCCTTGCACTGTGTTCTTCCCAC...CCAGGACTGGCCACTGCCACTCCATTTAATAGTGGCACTCTTGGGAGACAATGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR-3UTR CCA 90 bp ACATTGTCTCCCAAGAGTGCCACTATTAAATGGAGTGGCAGTGGCCAGTCCTGGGGACCTGGGCCTCTTTaGATCTGTGACCATCACAGA +
Preference number: 2 (lower is better)
Translates to: TLSPKSATIKWSGSGQSWGPGPL*ICDHHR
Trigger: TCTGTGATGGTCACAGATCCAAAGAGGCCCAGGTCC...CCAGGACTGGCCACTGCCACTCCATTTAATAGTGGCACTCTTGGGAGACAATGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR-3UTR TCA 90 bp AGGTTGGAAAAGCACAATGTGCACAATGTGCCGACTCACTCAACTCGGCCAGCAGCCTCTTTGGATCTGTaGCCATCACAGATCTGTCAG +
Preference number: 2 (lower is better)
Translates to: RLEKHNVHNVPTHSTRPAASLDL*PSQICQ
Trigger: CTGACAGATCTGTGATGGTCACAGATCCAAAGAGGC...TGCTGGCCGAGTTGAGTGAGTCGGCACATTGTGCACATTGTGCTTTTCCAACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR-3UTR TCA 90 bp AGGTTGGAAAAGCACAATGTGCACAATGTGCCGACTCACTCAACTCGGCCAGCATCTGCCGCTTTCACCTaGGAAGGTAAAAGTGCTGGA +
Preference number: 2 (lower is better)
Translates to: RLEKHNVHNVPTHSTRPASAAFT*EGKSAG
Trigger: TCCAGCACTTTTACCTTCTCAGGTGAAAGCGGCAGA...TGCTGGCCGAGTTGAGTGAGTCGGCACATTGTGCACATTGTGCTTTTCCAACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR-3UTR TCA 90 bp CCTGCTGTGGGGTTTGACAATAGCCACTCTTGGCCATCCAGCCTTCCAACACTGCGGATGTTCAGAAAATaGGACGTGTCCATACAATCG +
Preference number: 2 (lower is better)
Translates to: PAVGFDNSHSWPSSLPTLRMFRK*DVSIQS
Trigger: CGATTGTATGGACACGTCTCATTTTCTGAACATCCG...CAGTGTTGGAAGGCTGGATGGCCAAGAGTGGCTATTGTCAAACCCCACAGCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR-3UTR TCA 90 bp ACATTGTCTCCCAAGAGTGCCACTATTAAATGGAGTGGCAGTGGCCAGTCCTGGCAAACCTTTTACCCCTaGAGTGGCTTCAGACACGTT +
Preference number: 2 (lower is better)
Translates to: TLSPKSATIKWSGSGQSWQTFYP*SGFRHV
Trigger: AACGTGTCTGAAGCCACTTCAGGGGTAAAAGGTTTG...CCAGGACTGGCCACTGCCACTCCATTTAATAGTGGCACTCTTGGGAGACAATGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR-3UTR GCA 90 bp TTCTTGACTGCAGTCTTACCCTCTGAGCCTTTGGCAGGGAAGGTAGAGAAGACTACCACACTATCCTCCTaGCAGCCACATCTTCTCCTT +
Preference number: 2 (lower is better)
Translates to: FLTAVLPSEPLAGKVEKTTTLSS*QPHLLL
Trigger: AAGGAGAAGATGTGGCTGGCAGGAGGATAGTGTGGT...AGTCTTCTCTACCTTCCCTGCCAAAGGCTCAGAGGGTAAGACTGCAGTCAAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR-3UTR GCA 90 bp ACATTGTCTCCCAAGAGTGCCACTATTAAATGGAGTGGCAGTGGCCAGTCCTGGCTAAACCAGCAGAAGTaGAGTGTGGGAAGAACACAG +
Preference number: 2 (lower is better)
Translates to: TLSPKSATIKWSGSGQSWLNQQK*SVGRTQ
Trigger: CTGTGTTCTTCCCACACTGCACTTCTGCTGGTTTAG...CCAGGACTGGCCACTGCCACTCCATTTAATAGTGGCACTCTTGGGAGACAATGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR-3UTR CCA 90 bp AAGAGATCTCCTCCAAACAGTACATGCAAATCCACAAGGTCACAAACAAGGCTAGTCCACGTACCTCACTaGCTGTCCCATCCCGGTGCT +
Preference number: 2 (lower is better)
Translates to: KRSPPNSTCKSTRSQTRLVHVPH*LSHPGA
Trigger: AGCACCGGGATGGGACAGCCAGTGAGGTACGTGGAC...TAGCCTTGTTTGTGACCTTGTGGATTTGCATGTACTGTTTGGAGGAGATCTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR-3UTR CCA 90 bp ACATTGTCTCCCAAGAGTGCCACTATTAAATGGAGTGGCAGTGGCCAGTCCTGGTGGGAGGACGTGTCCTaGTGCAGATTCAAGTATTCT +
Preference number: 2 (lower is better)
Translates to: TLSPKSATIKWSGSGQSWWEDVS*CRFKYS
Trigger: AGAATACTTGAATCTGCACCAGGACACGTCCTCCCA...CCAGGACTGGCCACTGCCACTCCATTTAATAGTGGCACTCTTGGGAGACAATGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR CAA 90 bp AGTTATGAAAGAGTTGGAACAGGTAGGCCTGGGTTACAATACGCCTaGCTCTTGCCCTCTCTGCCCCTTGACCTAGCCAATTCTTTAAGC +
Preference number: 2 (lower is better)
Translates to: SYERVGTGRPGLQYA*LLPSLPLDLANSLS
Trigger: GCTTAAAGAATTGGCTAGGTCAAGGGGCAGAGAGGGCAAGAGCAAGGCGTATTGTAACCCAGGCCTACCTGTTCCAACTCTTTCATAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR-3UTR GCA 90 bp AATTCACATACATGCAGGGACAAGAGAGTTAGGCCTTCATTTCTTCTAAGACTGCTCAGCCTCAGGGTGTaGATGTTAGGTGGGCAGGGC +
Preference number: 2 (lower is better)
Translates to: NSHTCRDKRVRPSFLLRLLSLRV*MLGGQG
Trigger: GCCCTGCCCACCTAACATGCACACCCTGAGGCTGAG...CAGTCTTAGAAGAAATGAAGGCCTAACTCTCTTGTCCCTGCATGTATGTGAATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR-3UTR CCA 90 bp ACACCACATGTCCCCAACAACTGCATGTCTTGCCATGTTTTCTCCACCCAAGAAGACAATAGCCACTCTTaGCCATCCAGCCTTCCAACA +
Preference number: 2 (lower is better)
Translates to: TPHVPNNCMSCHVFSTQEDNSHS*PSSLPT
Trigger: TGTTGGAAGGCTGGATGGCCAAGAGTGGCTATTGTC...TTCTTGGGTGGAGAAAACATGGCAAGACATGCAGTTGTTGGGGACATGTGGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR CAA 90 bp CATGGGTTCCTAATCTCCTACGAACGTCAGCATACACAGACAGCTTaGCTCCCTAGCGTTCTTCCACATGGAACCACATCAAAACCAAGT +
Preference number: 2 (lower is better)
Translates to: HGFLISYERQHTQTA*LPSVLPHGTTSKPS
Trigger: ACTTGGTTTTGATGTGGTTCCATGTGGAAGAACGCTAGGGAGCAAAGCTGTCTGTGTATGCTGACGTTCGTAGGAGATTAGGAACCCATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR-3UTR GCA 90 bp ACACCACATGTCCCCAACAACTGCATGTCTTGCCATGTTTTCTCCACCCAAGAAAACTACAAAGGACACTaGTCAGGTTGTGAACGGTCC +
Preference number: 2 (lower is better)
Translates to: TPHVPNNCMSCHVFSTQENYKGH*SGCERS
Trigger: GGACCGTTCACAACCTGAGCAGTGTCCTTTGTAGTT...TTCTTGGGTGGAGAAAACATGGCAAGACATGCAGTTGTTGGGGACATGTGGTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR-3UTR CCA 90 bp AATTCACATACATGCAGGGACAAGAGAGTTAGGCCTTCATTTCTTCTAAGACTGTCCCGCGCCCTGCTGTaGGGTTTGACAATAGCCACT +
Preference number: 2 (lower is better)
Translates to: NSHTCRDKRVRPSFLLRLSRALL*GLTIAT
Trigger: AGTGGCTATTGTCAAACCCCACAGCAGGGCGCGGGA...CAGTCTTAGAAGAAATGAAGGCCTAACTCTCTTGTCCCTGCATGTATGTGAATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR-3UTR TCA 90 bp TGGGAAACTCAGTACTGCAAACAACACAAATTCAAGGTTCTTAAACGGCCCTCAAGCTGGGTCATCCTCTaGACATGGGAACATGCCAAC +
Preference number: 2 (lower is better)
Translates to: WETQYCKQHKFKVLKRPSSWVIL*TWEHAN
Trigger: GTTGGCATGTTCCCATGTTCAGAGGATGACCCAGCT...TGAGGGCCGTTTAAGAACCTTGAATTTGTGTTGTTTGCAGTACTGAGTTTCCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR-3UTR CCA 90 bp AAGAGATCTCCTCCAAACAGTACATGCAAATCCACAAGGTCACAAACAAGGCTAGGTGGTCATTCCAAGTaGGGCTCGGATACAGATGGA +
Preference number: 2 (lower is better)
Translates to: KRSPPNSTCKSTRSQTRLGGHSK*GSDTDG
Trigger: TCCATCTGTATCCGAGCCCCACTTGGAATGACCACC...TAGCCTTGTTTGTGACCTTGTGGATTTGCATGTACTGTTTGGAGGAGATCTCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR-3UTR TCA 90 bp TGTCTCCACGAACACACCACATGTCCCCAACAACTGCATGTCTTGCCATGTTTTAAGAGAAAGAAAACTTaGTTAGAAGGACGGGCACGA +
Preference number: 2 (lower is better)
Translates to: CLHEHTTCPQQLHVLPCFKRKKT*LEGRAR
Trigger: TCGTGCCCGTCCTTCTAATCAAGTTTTCTTTCTCTT...AAAACATGGCAAGACATGCAGTTGTTGGGGACATGTGGTGTGTTCGTGGAGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR-3UTR TCA 90 bp AAGAGATCTCCTCCAAACAGTACATGCAAATCCACAAGGTCACAAACAAGGCTAAGGGCAGGAGACAAATaGTCACTGTTCTGGGAGTCA +
Preference number: 2 (lower is better)
Translates to: KRSPPNSTCKSTRSQTRLRAGDK*SLFWES
Trigger: TGACTCCCAGAACAGTGATCATTTGTCTCCTGCCCT...TAGCCTTGTTTGTGACCTTGTGGATTTGCATGTACTGTTTGGAGGAGATCTCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR-3UTR TCA 90 bp AATTCACATACATGCAGGGACAAGAGAGTTAGGCCTTCATTTCTTCTAAGACTGTGCCACTCTGTACCATaGGGCCAGCAAGAGGACAAA +
Preference number: 2 (lower is better)
Translates to: NSHTCRDKRVRPSFLLRLCHSVP*GQQEDK
Trigger: TTTGTCCTCTTGCTGGCCTCATGGTACAGAGTGGCA...CAGTCTTAGAAGAAATGAAGGCCTAACTCTCTTGTCCCTGCATGTATGTGAATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR-3UTR TCA 90 bp AATTCACATACATGCAGGGACAAGAGAGTTAGGCCTTCATTTCTTCTAAGACTGATCGAAGTGTGGGTTTaGGCGTGCCACTCTGTACCA +
Preference number: 2 (lower is better)
Translates to: NSHTCRDKRVRPSFLLRLIEVWV*ACHSVP
Trigger: TGGTACAGAGTGGCACGCTCAAACCCACACTTCGAT...CAGTCTTAGAAGAAATGAAGGCCTAACTCTCTTGTCCCTGCATGTATGTGAATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR-3UTR TCA 90 bp TGGGAAACTCAGTACTGCAAACAACACAAATTCAAGGTTCTTAAACGGCCCTCAAGCAGAAACCCCATCTaGATGCTTCTTTCTTCCGCC +
Preference number: 2 (lower is better)
Translates to: WETQYCKQHKFKVLKRPSSRNPI*MLLSSA
Trigger: GGCGGAAGAAAGAAGCATTCAGATGGGGTTTCTGCT...TGAGGGCCGTTTAAGAACCTTGAATTTGTGTTGTTTGCAGTACTGAGTTTCCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR-3UTR GCA 90 bp ACACTGATGCTATTGTCTTTCAGAGACGATGTCTACATAAACATTGATAGGTCATCTCCTCGGCAGCCCTaGCACCCACTTCTGGGTTAT +
Preference number: 2 (lower is better)
Translates to: TLMLLSFRDDVYINIDRSSPRQP*HPLLGY
Trigger: ATAACCCAGAAGTGGGTGGCAGGGCTGCCGAGGAGA...TGACCTATCAATGTTTATGTAGACATCGTCTCTGAAAGACAATAGCATCAGTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR-3UTR TCA 90 bp TGTCTCCACGAACACACCACATGTCCCCAACAACTGCATGTCTTGCCATGTTTTGTTCACACAAAAATCTaGCGTGCTAAGAGAAAGAAA +
Preference number: 2 (lower is better)
Translates to: CLHEHTTCPQQLHVLPCFVHTKI*RAKRKK
Trigger: TTTCTTTCTCTTAGCACGTCAGATTTTTGTGTGAAC...AAAACATGGCAAGACATGCAGTTGTTGGGGACATGTGGTGTGTTCGTGGAGACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR-3UTR CCA 90 bp TGGGAAACTCAGTACTGCAAACAACACAAATTCAAGGTTCTTAAACGGCCCTCAAAGGGGACAGGGTTCTaGAACTTGCTAAATCAGTTC +
Preference number: 2 (lower is better)
Translates to: WETQYCKQHKFKVLKRPSKGTGF*NLLNQF
Trigger: GAACTGATTTAGCAAGTTCCAGAACCCTGTCCCCTT...TGAGGGCCGTTTAAGAACCTTGAATTTGTGTTGTTTGCAGTACTGAGTTTCCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR CAA 90 bp CTCTCAAGTCTCTTAGGCCCTAAGACACCACCACATTATCATTTATaGGTATTCATGGTCTCAATGGGTCTCAGGATCATTTCTTTCAGC +
Preference number: 2 (lower is better)
Translates to: LSSLLGPKTPPHYHL*VFMVSMGLRIISFS
Trigger: GCTGAAAGAAATGATCCTGAGACCCATTGAGACCATGAATACCAATAAATGATAATGTGGTGGTGTCTTAGGGCCTAAGAGACTTGAGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR-3UTR GCA 90 bp ACACTGATGCTATTGTCTTTCAGAGACGATGTCTACATAAACATTGATAGGTCAGAAGTTCTCAGAGAGTaGTCAGAGGGTAGTCCATCC +
Preference number: 2 (lower is better)
Translates to: TLMLLSFRDDVYINIDRSEVLRE*SEGSPS
Trigger: GGATGGACTACCCTCTGAGCACTCTCTGAGAACTTC...TGACCTATCAATGTTTATGTAGACATCGTCTCTGAAAGACAATAGCATCAGTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR-3UTR GCA 90 bp ACACTGATGCTATTGTCTTTCAGAGACGATGTCTACATAAACATTGATAGGTCAATCAAACGCTATCTATaGCAACCCACTGCTGCCGCT +
Preference number: 2 (lower is better)
Translates to: TLMLLSFRDDVYINIDRSIKRYL*QPTAAA
Trigger: AGCGGCAGCAGTGGGTTGGCATAGATAGCGTTTGAT...TGACCTATCAATGTTTATGTAGACATCGTCTCTGAAAGACAATAGCATCAGTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR-3UTR GCA 90 bp AAGAGATCTCCTCCAAACAGTACATGCAAATCCACAAGGTCACAAACAAGGCTAAAGAATTCACATACATaGAGGGACAAGAGAGTTAGG +
Preference number: 2 (lower is better)
Translates to: KRSPPNSTCKSTRSQTRLKNSHT*RDKRVR
Trigger: CCTAACTCTCTTGTCCCTGCATGTATGTGAATTCTT...TAGCCTTGTTTGTGACCTTGTGGATTTGCATGTACTGTTTGGAGGAGATCTCTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR CAA 90 bp ACATGGTTGAAACTTGTGAAAAATGAGACCACTTTCTTCTCACTGTaGGTGAGCAACAGTTCTTCCAGTCTAACAAACAGTCAAACAGTG +
Preference number: 2 (lower is better)
Translates to: TWLKLVKNETTFFSL*VSNSSSSLTNSQTV
Trigger: CACTGTTTGACTGTTTGTTAGACTGGAAGAACTGTTGCTCACCAACAGTGAGAAGAAAGTGGTCTCATTTTTCACAAGTTTCAACCATGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR-3UTR GCA 90 bp AATTCACATACATGCAGGGACAAGAGAGTTAGGCCTTCATTTCTTCTAAGACTGATTCTGTCACTAAGATaGAAATTGCTCTCAAGTCTC +
Preference number: 2 (lower is better)
Translates to: NSHTCRDKRVRPSFLLRLILSLR*KLLSSL
Trigger: GAGACTTGAGAGCAATTTGCATCTTAGTGACAGAAT...CAGTCTTAGAAGAAATGAAGGCCTAACTCTCTTGTCCCTGCATGTATGTGAATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR-3UTR CCA 90 bp AATTCACATACATGCAGGGACAAGAGAGTTAGGCCTTCATTTCTTCTAAGACTGAGGACAAAATTCAGCTaGTTCACACAAAAATCTGAC +
Preference number: 2 (lower is better)
Translates to: NSHTCRDKRVRPSFLLRLRTKFS*FTQKSD
Trigger: GTCAGATTTTTGTGTGAACCAGCTGAATTTTGTCCT...CAGTCTTAGAAGAAATGAAGGCCTAACTCTCTTGTCCCTGCATGTATGTGAATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR CAA 90 bp AACCAAGATATAAATATTACAATGATTCTGTCACTAAGATGCAAATaGCTCTCAAGTCTCTTAGGCCCTAAGACACCACCACATTATCAT +
Preference number: 2 (lower is better)
Translates to: NQDINITMILSLRCK*LSSLLGPKTPPHYH
Trigger: ATGATAATGTGGTGGTGTCTTAGGGCCTAAGAGACTTGAGAGCAATTTGCATCTTAGTGACAGAATCATTGTAATATTTATATCTTGGTT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR GCA 72 bp GAAGGCAGCGTCCGGCAGCATCGGGCAGGCCCGCCCTaGCCTGCCCTGGGCTGGGGTGACCATGAGTCGTCC +
Preference number: 3 (lower is better)
Translates to: EGSVRQHRAGPP*PALGWGDHESS
Trigger: GGACGACTCATGGTCACCCCAGCCCAGGGCAGGGCAGGGCGGGCCTGCCCGATGCTGCCGGACGCTGCCTTC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR GCA 72 bp CAACACTGCTCTTCCCTGACCGATGCAGAGCCGCGGTaGACGGGGAGCACCTCCTCAGCTCTCCTCGGCAGC +
Preference number: 3 (lower is better)
Translates to: QHCSSLTDAEPR*TGSTSSALLGS
Trigger: GCTGCCGAGGAGAGCTGAGGAGGTGCTCCCCGTGCACCGCGGCTCTGCATCGGTCAGGGAAGAGCAGTGTTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR TCA 72 bp CTCTTGGCCATCCAGCCTTCCAACACTGCTCTTCCCTaGCCGATGCAGAGCCGCGGTGCACGGGGAGCACCT +
Preference number: 3 (lower is better)
Translates to: LLAIQPSNTALP*PMQSRGARGAP
Trigger: AGGTGCTCCCCGTGCACCGCGGCTCTGCATCGGTCAGGGAAGAGCAGTGTTGGAAGGCTGGATGGCCAAGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR GCA 72 bp CTGGCTTTCCCTAGCCCTCCACAGCACAGGACCTACTaGACTCAGGCTACCCAGAAACCCACCAGCGGCAGC +
Preference number: 3 (lower is better)
Translates to: LAFPSPPQHRTY*TQATQKPTSGS
Trigger: GCTGCCGCTGGTGGGTTTCTGGGTAGCCTGAGTGCAGTAGGTCCTGTGCTGTGGAGGGCTAGGGAAAGCCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR CCA 72 bp AGACACTCGGGTGCCCAGAATGGCAGCAGTGCCCCGTaGAACATCCGTGGGAGGACGTGTCCTGGTGCAGAT +
Preference number: 3 (lower is better)
Translates to: RHSGAQNGSSAP*NIRGRTCPGAD
Trigger: ATCTGCACCAGGACACGTCCTCCCACGGATGTTCCACGGGGCACTGCTGCCATTCTGGGCACCCGAGTGTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR CCA 72 bp CAGGGTCCAGCCTGGGGGTCAGGGGAGGTCCATCCATaGCGACAATGTCAGATGGGCCCAGATGGGAAACTC +
Preference number: 3 (lower is better)
Translates to: QGPAWGSGEVHP*RQCQMGPDGKL
Trigger: GAGTTTCCCATCTGGGCCCATCTGACATTGTCGCCATGGATGGACCTCCCCTGACCCCCAGGCTGGACCCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR TCA 72 bp AGTACTCCCCCACCCTGTCCCCAATCAGACACAGGCTaGCCCTATTTCCTGTGGACTCCCGCGCCCTGCTGT +
Preference number: 3 (lower is better)
Translates to: STPPPCPQSDTG*PYFLWTPAPCC
Trigger: ACAGCAGGGCGCGGGAGTCCACAGGAAATAGGGTCAGCCTGTGTCTGATTGGGGACAGGGTGGGGGAGTACT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR TCA 72 bp TCTATCCTAGGAGACAGGGCAGACAACAGCCGGGACTaGCTGGCTAGGGTGGGAGGGCCAGGAGCCAAATGC +
Preference number: 3 (lower is better)
Translates to: SILGDRADNSRD*LARVGGPGAKC
Trigger: GCATTTGGCTCCTGGCCCTCCCACCCTAGCCAGTCAGTCCCGGCTGTTGTCTGCCCTGTCTCCTAGGATAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR GCA 72 bp GGCAAATGCCATCCATGGCTCCCACATCATTTGCAGTaGACAGGGTCCAGCCTGGGGGTCAGGGGAGGTCCA +
Preference number: 3 (lower is better)
Translates to: GKCHPWLPHHLQ*TGSSLGVRGGP
Trigger: TGGACCTCCCCTGACCCCCAGGCTGGACCCTGTGCACTGCAAATGATGTGGGAGCCATGGATGGCATTTGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR CCA 72 bp GGCTCCCACATCATTTGCAGTGCACAGGGTCCAGCCTaGGGGTCAGGGGAGGTCCATCCATGGCGACAATGT +
Preference number: 3 (lower is better)
Translates to: GSHIICSAQGPA*GSGEVHPWRQC
Trigger: ACATTGTCGCCATGGATGGACCTCCCCTGACCCCCAGGCTGGACCCTGTGCACTGCAAATGATGTGGGAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR GCA 72 bp ACAATAGCCACTCTTGGCCATCCAGCCTTCCAACACTaGTCTTCCCTGACCGATGCAGAGCCGCGGTGCACG +
Preference number: 3 (lower is better)
Translates to: TIATLGHPAFQH*SSLTDAEPRCT
Trigger: CGTGCACCGCGGCTCTGCATCGGTCAGGGAAGAGCAGTGTTGGAAGGCTGGATGGCCAAGAGTGGCTATTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR CCA 72 bp CCGCGCCCTGCTGTGGGGTTTGACAATAGCCACTCTTaGCCATCCAGCCTTCCAACACTGCTCTTCCCTGAC +
Preference number: 3 (lower is better)
Translates to: PRPAVGFDNSHS*PSSLPTLLFPD
Trigger: GTCAGGGAAGAGCAGTGTTGGAAGGCTGGATGGCCAAGAGTGGCTATTGTCAAACCCCACAGCAGGGCGCGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR CCA 72 bp CTGACCCTATTTCCTGTGGACTCCCGCGCCCTGCTGTaGGGTTTGACAATAGCCACTCTTGGCCATCCAGCC +
Preference number: 3 (lower is better)
Translates to: LTLFPVDSRALL*GLTIATLGHPA
Trigger: GGCTGGATGGCCAAGAGTGGCTATTGTCAAACCCCACAGCAGGGCGCGGGAGTCCACAGGAAATAGGGTCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR CCA 72 bp CCACCAGCGGCAGCCACAGTGTCACCTAAATCCAAGTaGGGCAAATCCCAGAGCAAGTCTGGGGTGCTGCCA +
Preference number: 3 (lower is better)
Translates to: PPAAATVSPKSK*GKSQSKSGVLP
Trigger: TGGCAGCACCCCAGACTTGCTCTGGGATTTGCCCCACTTGGATTTAGGTGACACTGTGGCTGCCGCTGGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR TCA 72 bp TACAAGGATGGACACAAGTCTCCACGCTCCTCCGACTaGCCCACAGAGACTCTGACATGGGCGGGGACGAAT +
Preference number: 3 (lower is better)
Translates to: YKDGHKSPRSSD*PTETLTWAGTN
Trigger: ATTCGTCCCCGCCCATGTCAGAGTCTCTGTGGGTCAGTCGGAGGAGCGTGGAGACTTGTGTCCATCCTTGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR GCA 72 bp CCAAGTGGGGCAAATCCCAGAGCAAGTCTGGGGTGCTaGCAGGACACAGCGGCACTTAGCCTATCTATCCTA +
Preference number: 3 (lower is better)
Translates to: PSGANPRASLGC*QDTAALSLSIL
Trigger: TAGGATAGATAGGCTAAGTGCCGCTGTGTCCTGGCAGCACCCCAGACTTGCTCTGGGATTTGCCCCACTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR CCA 72 bp TGCCCAGAATGGCAGCAGTGCCCCGTGGAACATCCGTaGGAGGACGTGTCCTGGTGCAGATTCAAGTATTCT +
Preference number: 3 (lower is better)
Translates to: CPEWQQCPVEHP*EDVSWCRFKYS
Trigger: AGAATACTTGAATCTGCACCAGGACACGTCCTCCCACGGATGTTCCACGGGGCACTGCTGCCATTCTGGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR CCA 72 bp CTTTTGATCATAGAGAAGACACTCGGGTGCCCAGAATaGCAGCAGTGCCCCGTGGAACATCCGTGGGAGGAC +
Preference number: 3 (lower is better)
Translates to: LLIIEKTLGCPE*QQCPVEHPWED
Trigger: GTCCTCCCACGGATGTTCCACGGGGCACTGCTGCCATTCTGGGCACCCGAGTGTCTTCTCTATGATCAAAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR TCA 72 bp ACCCAAGGTCAGAGGACCTGGGCCTCTTTGGATCTGTaGCCATCACAGATCTGTCAGTCACTGGGCCACTCT +
Preference number: 3 (lower is better)
Translates to: TQGQRTWASLDL*PSQICQSLGHS
Trigger: AGAGTGGCCCAGTGACTGACAGATCTGTGATGGTCACAGATCCAAAGAGGCCCAGGTCCTCTGACCTTGGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR TCA 72 bp CTCTCCTCGGCAGCCCTGCCACCCACTTCTGGGTTATaGACTACAAAGGACACTGCTCAGGTTGTGAACGGT +
Preference number: 3 (lower is better)
Translates to: LSSAALPPTSGL*TTKDTAQVVNG
Trigger: ACCGTTCACAACCTGAGCAGTGTCCTTTGTAGTTCATAACCCAGAAGTGGGTGGCAGGGCTGCCGAGGAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR TCA 72 bp AAGCCCAGAAAAGGGGTCTGCTACGTCAGCATCACCTaGGGCAGCCTGTCACCTGCTCTAGTCCTTTCAGGA +
Preference number: 3 (lower is better)
Translates to: KPRKGVCYVSIT*GSLSPALVLSG
Trigger: TCCTGAAAGGACTAGAGCAGGTGACAGGCTGCCTCAGGTGATGCTGACGTAGCAGACCCCTTTTCTGGGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR GCA 72 bp AAGGAAAGTGGAGAGGCTGAGGGCAGGGTGAGGCTTTaGCTGCTGTCTAGCAAATCAACGGGGCAAATGCCA +
Preference number: 3 (lower is better)
Translates to: KESGEAEGRVRL*LLSSKSTGQMP
Trigger: TGGCATTTGCCCCGTTGATTTGCTAGACAGCAGGCAAAGCCTCACCCTGCCCTCAGCCTCTCCACTTTCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR CCA 72 bp AGGAAAACAGAACGGTGGCTAGGTTATCCTGTGCCCTaGCTTTCCCTAGCCCTCCACAGCACAGGACCTACT +
Preference number: 3 (lower is better)
Translates to: RKTERWLGYPVP*LSLALHSTGPT
Trigger: AGTAGGTCCTGTGCTGTGGAGGGCTAGGGAAAGCCAGGGCACAGGATAACCTAGCCACCGTTCTGTTTTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR TCA 72 bp CTGGCTGTAAAGGTGAGGGGCCTGTTCATCACGCTATaGGAGCATGTACAAGCCACTTCTGGCTCTACGGGA +
Preference number: 3 (lower is better)
Translates to: LAVKVRGLFITL*EHVQATSGSTG
Trigger: TCCCGTAGAGCCAGAAGTGGCTTGTACATGCTCTCATAGCGTGATGAACAGGCCCCTCACCTTTACAGCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR GCA 72 bp CCACACACAACGGGCTCAGGTTGGAAAAGCACAATGTaGACAATGTGCCGACTCACTCAACTCGGCCAGCAA +
Preference number: 3 (lower is better)
Translates to: PHTTGSGWKSTM*TMCRLTQLGQQ
Trigger: TTGCTGGCCGAGTTGAGTGAGTCGGCACATTGTGCACATTGTGCTTTTCCAACCTGAGCCCGTTGTGTGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR GCA 72 bp GGCTTTGCCTGCTGTCTAGCAAATCAACGGGGCAAATaGCATCCATGGCTCCCACATCATTTGCAGTGCACA +
Preference number: 3 (lower is better)
Translates to: GFACCLANQRGK*HPWLPHHLQCT
Trigger: TGTGCACTGCAAATGATGTGGGAGCCATGGATGGCATTTGCCCCGTTGATTTGCTAGACAGCAGGCAAAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR GCA 72 bp GCCACCCACTTCTGGGTTATGAACTACAAAGGACACTaGTCAGGTTGTGAACGGTCCTTAGGACATAGTGGG +
Preference number: 3 (lower is better)
Translates to: ATHFWVMNYKGH*SGCERSLGHSG
Trigger: CCCACTATGTCCTAAGGACCGTTCACAACCTGAGCAGTGTCCTTTGTAGTTCATAACCCAGAAGTGGGTGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR CCA 72 bp GAGCCTTTGGCAGGGAAGGTAGAGAAGACTGGTACCTaGCATTCAGTCGAGATCAACAGGGCCAAAATACAC +
Preference number: 3 (lower is better)
Translates to: EPLAGKVEKTGT*HSVEINRAKIH
Trigger: GTGTATTTTGGCCCTGTTGATCTCGACTGAATGCCAGGTACCAGTCTTCTCTACCTTCCCTGCCAAAGGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR CCA 72 bp AATCATGAAATTCTCTCCAGAAGCATCCAGCCAGGGTaGAGGACAAGGCATACCAGGTCTGCCCGTAAGTCT +
Preference number: 3 (lower is better)
Translates to: NHEILSRSIQPG*RTRHTRSARKS
Trigger: AGACTTACGGGCAGACCTGGTATGCCTTGTCCTCCACCCTGGCTGGATGCTTCTGGAGAGAATTTCATGATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR TCA 72 bp CACACTATCCTCCTGCCAGCCACATCTTCTCCTTGGTaGGGCGACCCACAAAATCTTAGAGCTACAAGATCT +
Preference number: 3 (lower is better)
Translates to: HTILLPATSSPW*GDPQNLRATRS
Trigger: AGATCTTGTAGCTCTAAGATTTTGTGGGTCGCCTCACCAAGGAGAAGATGTGGCTGGCAGGAGGATAGTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR TCA 72 bp TTGAAGGGACTTGGGAAAGCGAGCAGAAACCCCATCTaGATGCTTCTTTCTTCCGCCTCACTTCAAAGGTGG +
Preference number: 3 (lower is better)
Translates to: LKGLGKASRNPI*MLLSSASLQRW
Trigger: CCACCTTTGAAGTGAGGCGGAAGAAAGAAGCATTCAGATGGGGTTTCTGCTCGCTTTCCCAAGTCCCTTCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR CCA 72 bp GACACTAGCTTTTCCTATCCCTGTACCATACAAGCCTaGCAAGGAAGTTACAGGGACACACCCTTTCGTCAG +
Preference number: 3 (lower is better)
Translates to: DTSFSYPCTIQA*QGSYRDTPFRQ
Trigger: CTGACGAAAGGGTGTGTCCCTGTAACTTCCTTGCCAGGCTTGTATGGTACAGGGATAGGAAAAGCTAGTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR-3UTR CAA 90 bp TTCTTGACTGCAGTCTTACCCTCTGAGCCTTTGGCAGGGAAGGTAGAGAAGACTGGATTATACTGGATATaGGTTTTAGGGAGCCAGCCC +
Preference number: 3 (lower is better)
Translates to: FLTAVLPSEPLAGKVEKTGLYWI*VLGSQP
Trigger: GGGCTGGCTCCCTAAAACCAATATCCAGTATAATCC...AGTCTTCTCTACCTTCCCTGCCAAAGGCTCAGAGGGTAAGACTGCAGTCAAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR-3UTR CAA 90 bp TGGGAAACTCAGTACTGCAAACAACACAAATTCAAGGTTCTTAAACGGCCCTCATGCAAGGGACAGGACTaGCCAGAGGGGGTCGTTTTG +
Preference number: 3 (lower is better)
Translates to: WETQYCKQHKFKVLKRPSCKGQD*PEGVVL
Trigger: CAAAACGACCCCCTCTGGCAAGTCCTGTCCCTTGCA...TGAGGGCCGTTTAAGAACCTTGAATTTGTGTTGTTTGCAGTACTGAGTTTCCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR TCA 72 bp GTACCTTTACTCAGCAATGGCTCAGTGAGTTTTTCCTaGCCAGACAACTCCATGGTGCAGGGTCAGGAAAAC +
Preference number: 3 (lower is better)
Translates to: VPLLSNGSVSFS*PDNSMVQGQEN
Trigger: GTTTTCCTGACCCTGCACCATGGAGTTGTCTGGTCAGGAAAAACTCACTGAGCCATTGCTGAGTAAAGGTAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR GCA 72 bp ACGAACACACCACATGTCCCCAACAACTGCATGTCTTaGCATGTTTTCTCCACCCAAGAAAGTGAAGCCATC +
Preference number: 3 (lower is better)
Translates to: TNTPHVPNNCMS*HVFSTQESEAI
Trigger: GATGGCTTCACTTTCTTGGGTGGAGAAAACATGGCAAGACATGCAGTTGTTGGGGACATGTGGTGTGTTCGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR GCA 72 bp CATGTCTCCACGAACACACCACATGTCCCCAACAACTaGATGTCTTGCCATGTTTTCTCCACCCAAGAAAGT +
Preference number: 3 (lower is better)
Translates to: HVSTNTPHVPNN*MSCHVFSTQES
Trigger: ACTTTCTTGGGTGGAGAAAACATGGCAAGACATGCAGTTGTTGGGGACATGTGGTGTGTTCGTGGAGACATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR GCA 72 bp TCCGAAGACAAGTTAATATCCATCAAGACTACCAAGTaGCAGAGGGTGTCAACCCCATGTCTCCACGAACAC +
Preference number: 3 (lower is better)
Translates to: SEDKLISIKTTK*QRVSTPCLHEH
Trigger: GTGTTCGTGGAGACATGGGGTTGACACCCTCTGGCACTTGGTAGTCTTGATGGATATTAACTTGTCTTCGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR CCA 72 bp ATGCCAACCTGGAACTGCAGCAGAACTGGATTATACTaGATATTGGTTTTAGGGAGCCAGCCCCTAGTACTC +
Preference number: 3 (lower is better)
Translates to: MPTWNCSRTGLY*ILVLGSQPLVL
Trigger: GAGTACTAGGGGCTGGCTCCCTAAAACCAATATCCAGTATAATCCAGTTCTGCTGCAGTTCCAGGTTGGCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR CCA 72 bp ACATGGGAACATGCCAACCTGGAACTGCAGCAGAACTaGATTATACTGGATATTGGTTTTAGGGAGCCAGCC +
Preference number: 3 (lower is better)
Translates to: TWEHANLELQQN*IILDIGFREPA
Trigger: GGCTGGCTCCCTAAAACCAATATCCAGTATAATCCAGTTCTGCTGCAGTTCCAGGTTGGCATGTTCCCATGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR CCA 72 bp GCGCTCACTAGACCCAGCAAGCAGGAAGGTGGCACATaGTTGAAACTTGTGAAAAATGAGACCACTTTCTTC +
Preference number: 3 (lower is better)
Translates to: ALTRPSKQEGGT*LKLVKNETTFF
Trigger: GAAGAAAGTGGTCTCATTTTTCACAAGTTTCAACCATGTGCCACCTTCCTGCTTGCTGGGTCTAGTGAGCGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR CCA 72 bp TTCCTACCTCAGAGGAGCCGTACCTTTACTCAGCAATaGCTCAGTGAGTTTTTCCTGACCAGACAACTCCAT +
Preference number: 3 (lower is better)
Translates to: FLPQRSRTFTQQ*LSEFFLTRQLH
Trigger: ATGGAGTTGTCTGGTCAGGAAAAACTCACTGAGCCATTGCTGAGTAAAGGTACGGCTCCTCTGAGGTAGGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR CCA 72 bp CTATTAACATTGTCTCCCAAGAGTGCCACTATTAAATaGAGTGGCAGTGGCCAGTCCTGGCAGAAAGCTGTC +
Preference number: 3 (lower is better)
Translates to: LLTLSPKSATIK*SGSGQSWQKAV
Trigger: GACAGCTTTCTGCCAGGACTGGCCACTGCCACTCCATTTAATAGTGGCACTCTTGGGAGACAATGTTAATAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR CCA 72 bp GGTCCATCCATGGCGACAATGTCAGATGGGCCCAGATaGGAAACTCAGTACTGCAAACAACACAAATTCAAG +
Preference number: 3 (lower is better)
Translates to: GPSMATMSDGPR*ETQYCKQHKFK
Trigger: CTTGAATTTGTGTTGTTTGCAGTACTGAGTTTCCCATCTGGGCCCATCTGACATTGTCGCCATGGATGGACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR TCA 72 bp AAGGCCTCCTTTCATCACAGGATAAAACGGGTTTATTaGAGGGACTTGGGAAAGCGAGCAGAAACCCCATCT +
Preference number: 3 (lower is better)
Translates to: KASFHHRIKRVY*RDLGKRAETPS
Trigger: AGATGGGGTTTCTGCTCGCTTTCCCAAGTCCCTTCAATAAACCCGTTTTATCCTGTGATGAAAGGAGGCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR GCA 72 bp GCTATCCCAGCATTTAGGAGGAAGAAACAGGGGGATTaGTATAAGTTAGAGGTCAGACAGGACTACCTAGCA +
Preference number: 3 (lower is better)
Translates to: AIPAFRRKKQGD*YKLEVRQDYLA
Trigger: TGCTAGGTAGTCCTGTCTGACCTCTAACTTATAGCAATCCCCCTGTTTCTTCCTCCTAAATGCTGGGATAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR CCA 72 bp CTTTGGATCTGTGACCATCACAGATCTGTCAGTCACTaGGCCACTCTAGGCAACCTTTCCCAAAGTGAATTT +
Preference number: 3 (lower is better)
Translates to: LWICDHHRSVSH*ATLGNLSQSEF
Trigger: AAATTCACTTTGGGAAAGGTTGCCTAGAGTGGCCCAGTGACTGACAGATCTGTGATGGTCACAGATCCAAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR CCA 72 bp CTCACGTACAATGCTCCAAACCTAAGCAAGCGGCACTaGTCCACAGGGGGCTTAATAAACACAAAAATATGC +
Preference number: 3 (lower is better)
Translates to: LTYNAPNLSKRH*STGGLINTKIC
Trigger: GCATATTTTTGTGTTTATTAAGCCCCCTGTGGACCAGTGCCGCTTGCTTAGGTTTGGAGCATTGTACGTGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR CCA 72 bp AGTGGCAGTGGCCAGTCCTGGCAGAAAGCTGTCATTTaGCCACATAATAACTTGTGTTGTCACAGAATTACG +
Preference number: 3 (lower is better)
Translates to: SGSGQSWQKAVI*PHNNLCCHRIT
Trigger: CGTAATTCTGTGACAACACAAGTTATTATGTGGCCAAATGACAGCTTTCTGCCAGGACTGGCCACTGCCACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR CCA 72 bp AGTGCCACTATTAAATGGAGTGGCAGTGGCCAGTCCTaGCAGAAAGCTGTCATTTGGCCACATAATAACTTG +
Preference number: 3 (lower is better)
Translates to: SATIKWSGSGQS*QKAVIWPHNNL
Trigger: CAAGTTATTATGTGGCCAAATGACAGCTTTCTGCCAGGACTGGCCACTGCCACTCCATTTAATAGTGGCACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR TCA 72 bp AACCTATGGTCTAAATTTGATTCTGTGAGATGGCTTTaGACTCAATGGGCTTGGGTCCCTCCACCCCTTTAC +
Preference number: 3 (lower is better)
Translates to: NLWSKFDSVRWL*TQWAWVPPPLY
Trigger: GTAAAGGGGTGGAGGGACCCAAGCCCATTGAGTTCAAAGCCATCTCACAGAATCAAATTTAGACCATAGGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR GCA 72 bp GCTATTCTGACGAACAAGGAGGGGCCAGGTACTTCCTaGTGGGTACCAGATGCAATTATGAAAGAAAACAAA +
Preference number: 3 (lower is better)
Translates to: AILTNKEGPGTS*WVPDAIMKENK
Trigger: TTTGTTTTCTTTCATAATTGCATCTGGTACCCAGCAGGAAGTACCTGGCCCCTCCTTGTTCGTCAGAATAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR-3UTR CAA 90 bp TGTCTCCACGAACACACCACATGTCCCCAACAACTGCATGTCTTGCCATGTTTTTTTCAATTCACAGGGTaGCTGTACAAACCTCAAATC +
Preference number: 3 (lower is better)
Translates to: CLHEHTTCPQQLHVLPCFFQFTG*LYKPQI
Trigger: GATTTGAGGTTTGTACAGCAACCCTGTGAATTGAAA...AAAACATGGCAAGACATGCAGTTGTTGGGGACATGTGGTGTGTTCGTGGAGACA
44% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR TCA 72 bp CACTGTTCAAGAACCTATGGTCTAAATTTGATTCTGTaGGATGGCTTTGAACTCAATGGGCTTGGGTCCCTC +
Preference number: 3 (lower is better)
Translates to: HCSRTYGLNLIL*DGFELNGLGSL
Trigger: GAGGGACCCAAGCCCATTGAGTTCAAAGCCATCTCACAGAATCAAATTTAGACCATAGGTTCTTGAACAGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR TCA 72 bp TTAACTAAATGTACATCCCCGCCCCAATTCCATGATTaGCAAGAGTGCTTATGTGACACATGGAAGGCACCA +
Preference number: 3 (lower is better)
Translates to: LTKCTSPPQFHD*QECLCDTWKAP
Trigger: TGGTGCCTTCCATGTGTCACATAAGCACTCTTGTCAATCATGGAATTGGGGCGGGGATGTACATTTAGTTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR-3UTR CAA 90 bp AAGAGATCTCCTCCAAACAGTACATGCAAATCCACAAGGTCACAAACAAGGCTATCTATTACCTTCTGTTaGCACAGAGGCACAACAGGA +
Preference number: 3 (lower is better)
Translates to: KRSPPNSTCKSTRSQTRLSITFC*HRGTTG
Trigger: TCCTGTTGTGCCTCTGTGCAAACAGAAGGTAATAGA...TAGCCTTGTTTGTGACCTTGTGGATTTGCATGTACTGTTTGGAGGAGATCTCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR GCA 72 bp TCATCCTCTGAACATGGGAACATGCCAACCTGGAACTaGAGCAGAACTGGATTATACTGGATATTGGTTTTA +
Preference number: 3 (lower is better)
Translates to: SSSEHGNMPTWN*SRTGLYWILVL
Trigger: TAAAACCAATATCCAGTATAATCCAGTTCTGCTGCAGTTCCAGGTTGGCATGTTCCCATGTTCAGAGGATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR GCA 72 bp GTTGCTGTACAAACCTCAAATCTATTACCTTCTGTTTaGACAGAGGCACAACAGGAAAGATACAGGTGTCTC +
Preference number: 3 (lower is better)
Translates to: VAVQTSNLLPSV*TEAQQERYRCL
Trigger: GAGACACCTGTATCTTTCCTGTTGTGCCTCTGTGCAAACAGAAGGTAATAGATTTGAGGTTTGTACAGCAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR CCA 72 bp CACCACATTATCATTTATTGGTATTCATGGTCTCAATaGGTCTCAGGATCATTTCTTTCAGCCGACAACACT +
Preference number: 3 (lower is better)
Translates to: HHIIIYWYSWSQ*VSGSFLSADNT
Trigger: AGTGTTGTCGGCTGAAAGAAATGATCCTGAGACCCATTGAGACCATGAATACCAATAAATGATAATGTGGTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR CCA 72 bp CTAAGACACCACCACATTATCATTTATTGGTATTCATaGTCTCAATGGGTCTCAGGATCATTTCTTTCAGCC +
Preference number: 3 (lower is better)
Translates to: LRHHHIIIYWYS*SQWVSGSFLSA
Trigger: GGCTGAAAGAAATGATCCTGAGACCCATTGAGACCATGAATACCAATAAATGATAATGTGGTGGTGTCTTAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR TCA 72 bp ATGGAGTCTTTGCAACCCCATTTAAAGGGAATTCTCTaGGGCAGAAAGCCTGATTTTGATTATATAGGTATA +
Preference number: 3 (lower is better)
Translates to: MESLQPHLKGIL*GRKPDFDYIGI
Trigger: TATACCTATATAATCAAAATCAGGCTTTCTGCCTCAGAGAATTCCCTTTAAATGGGGTTGCAAAGACTCCAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR-3UTR CAA 90 bp ACACTGATGCTATTGTCTTTCAGAGACGATGTCTACATAAACATTGATAGGTCATACTGCATTCTTGCTTaGTCTGTAGACAAAAGCAAT +
Preference number: 3 (lower is better)
Translates to: TLMLLSFRDDVYINIDRSYCILA*SVDKSN
Trigger: ATTGCTTTTGTCTACAGACAAAGCAAGAATGCAGTA...TGACCTATCAATGTTTATGTAGACATCGTCTCTGAAAGACAATAGCATCAGTGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR GCA 72 bp CAAGATATAAATATTACAATGATTCTGTCACTAAGATaGAAATTGCTCTCAAGTCTCTTAGGCCCTAAGACA +
Preference number: 3 (lower is better)
Translates to: QDINITMILSLR*KLLSSLLGPKT
Trigger: TGTCTTAGGGCCTAAGAGACTTGAGAGCAATTTGCATCTTAGTGACAGAATCATTGTAATATTTATATCTTG
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
CDS-3UTR CCA 90 bp TGTCCATACAATCGAAGTGTGGGTTTGAGCGTGCCACTCTGTACCATGAGGCCAGGCTCGGTGGTGGGTTaGTACGGGCTGCTGGCGCCC +
Preference number: 4 (lower is better)
Translates to: CPYNRSVGLSVPLCTMRPGSVVG*YGLLAP
Trigger: GGGCGCCAGCAGCCCGTACCAACCCACCACCGAGCC...TGGCCTCATGGTACAGAGTGGCACGCTCAAACCCACACTTCGATTGTATGGACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
CDS-3UTR CCA 90 bp GCCACTCTTGGCCATCCAGCCTTCCAACACTGCTCTTCCCTGACCGATGCAGAGAAGGCCAGAATCACTTaGGCGACCTTGAGGCGGCCG +
Preference number: 4 (lower is better)
Translates to: ATLGHPAFQHCSSLTDAEKARIT*ATLRRP
Trigger: CGGCCGCCTCAAGGTCGCCCAAGTGATTCTGGCCTT...CTCTGCATCGGTCAGGGAAGAGCAGTGTTGGAAGGCTGGATGGCCAAGAGTGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
CDS-3UTR GCA 90 bp CCTGCTGTGGGGTTTGACAATAGCCACTCTTGGCCATCCAGCCTTCCAACACTGCCGAGATCATGGAGGTaGTCGAGGCCTCGCCCTCGA +
Preference number: 4 (lower is better)
Translates to: PAVGFDNSHSWPSSLPTLPRSWR*SRPRPR
Trigger: TCGAGGGCGAGGCCTCGAGCACCTCCATGATCTCGG...CAGTGTTGGAAGGCTGGATGGCCAAGAGTGGCTATTGTCAAACCCCACAGCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
CDS-3UTR CCA 90 bp ACATTGTCTCCCAAGAGTGCCACTATTAAATGGAGTGGCAGTGGCCAGTCCTGGTCACCGGCTCGGTGGTaGGTTGGTACGGGCTGCTGG +
Preference number: 4 (lower is better)
Translates to: TLSPKSATIKWSGSGQSWSPARW*VGTGCW
Trigger: CCAGCAGCCCGTACCAACCCACCACCGAGCCGGTGA...CCAGGACTGGCCACTGCCACTCCATTTAATAGTGGCACTCTTGGGAGACAATGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR CAA 72 bp CTATTTCCTGTGGACTCCCGCGCCCTGCTGTGGGGTTaGACAATAGCCACTCTTGGCCATCCAGCCTTCCAA +
Preference number: 4 (lower is better)
Translates to: LFPVDSRALLWG*TIATLGHPAFQ
Trigger: TTGGAAGGCTGGATGGCCAAGAGTGGCTATTGTCAAACCCCACAGCAGGGCGCGGGAGTCCACAGGAAATAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
CDS-3UTR GCA 90 bp GCCACTCTTGGCCATCCAGCCTTCCAACACTGCTCTTCCCTGACCGATGCAGAGCTGACTCTCCATTTCTaGATGGCCAGGAATGTGCTC +
Preference number: 4 (lower is better)
Translates to: ATLGHPAFQHCSSLTDAELTLHF*MARNVL
Trigger: GAGCACATTCCTGGCCATGCAGAAATGGAGAGTCAG...CTCTGCATCGGTCAGGGAAGAGCAGTGTTGGAAGGCTGGATGGCCAAGAGTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
CDS-3UTR CCA 90 bp TTCTTGACTGCAGTCTTACCCTCTGAGCCTTTGGCAGGGAAGGTAGAGAAGACTCATGTGTCCAGGCGCTaGATCTCAGGGCGGCTGTCC +
Preference number: 4 (lower is better)
Translates to: FLTAVLPSEPLAGKVEKTHVSRR*ISGRLS
Trigger: GGACAGCCGCCCTGAGATCCAGCGCCTGGACACATG...AGTCTTCTCTACCTTCCCTGCCAAAGGCTCAGAGGGTAAGACTGCAGTCAAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
CDS-3UTR TCA 90 bp AATTCACATACATGCAGGGACAAGAGAGTTAGGCCTTCATTTCTTCTAAGACTGTCACTTGGGCGACCTTaGGGCGGCCGAGCGCGCCGC +
Preference number: 4 (lower is better)
Translates to: NSHTCRDKRVRPSFLLRLSLGRP*GGRARR
Trigger: GCGGCGCGCTCGGCCGCCTCAAGGTCGCCCAAGTGA...CAGTCTTAGAAGAAATGAAGGCCTAACTCTCTTGTCCCTGCATGTATGTGAATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
CDS-3UTR TCA 90 bp ACATTGTCTCCCAAGAGTGCCACTATTAAATGGAGTGGCAGTGGCCAGTCCTGGTCTGCTGGCGGACGCTaGCTCTCCATTTCTGCATGG +
Preference number: 4 (lower is better)
Translates to: TLSPKSATIKWSGSGQSWSAGGR*LSISAW
Trigger: CCATGCAGAAATGGAGAGTCAGCGTCCGCCAGCAGA...CCAGGACTGGCCACTGCCACTCCATTTAATAGTGGCACTCTTGGGAGACAATGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
CDS-3UTR CCA 90 bp CCTGCTGTGGGGTTTGACAATAGCCACTCTTGGCCATCCAGCCTTCCAACACTGCTCTCCATTTCTGCATaGCCAGGAATGTGCTCACTG +
Preference number: 4 (lower is better)
Translates to: PAVGFDNSHSWPSSLPTLLSISA*PGMCSL
Trigger: CAGTGAGCACATTCCTGGCCATGCAGAAATGGAGAG...CAGTGTTGGAAGGCTGGATGGCCAAGAGTGGCTATTGTCAAACCCCACAGCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR CAA 72 bp AGTCTTCCTTCACTGACCTTTCTCCAGGCAGATTCCTaGGGTAGCTATTCTGACGAACAAGGAGGGGCCAGG +
Preference number: 4 (lower is better)
Translates to: SLPSLTFLQADS*GSYSDEQGGAR
Trigger: CCTGGCCCCTCCTTGTTCGTCAGAATAGCTACCCAAGGAATCTGCCTGGAGAAAGGTCAGTGAAGGAAGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR CAA 72 bp GGAACAGGTAGGCCTGGGTTACAATACGCCTTGCTCTaGCCCTCTCTGCCCCTTGACCTAGCCAATTCTTTA +
Preference number: 4 (lower is better)
Translates to: GTGRPGLQYALL*PSLPLDLANSL
Trigger: TAAAGAATTGGCTAGGTCAAGGGGCAGAGAGGGCAAGAGCAAGGCGTATTGTAACCCAGGCCTACCTGTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
CDS-3UTR GCA 90 bp GCCACTCTTGGCCATCCAGCCTTCCAACACTGCTCTTCCCTGACCGATGCAGAGCTCGATGCAGATAAATaGAATCAAGGCCAGAATCAC +
Preference number: 4 (lower is better)
Translates to: ATLGHPAFQHCSSLTDAELDADK*NQGQNH
Trigger: GTGATTCTGGCCTTGATTGCATTTATCTGCATCGAG...CTCTGCATCGGTCAGGGAAGAGCAGTGTTGGAAGGCTGGATGGCCAAGAGTGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
CDS-3UTR CCA 90 bp AAGAGATCTCCTCCAAACAGTACATGCAAATCCACAAGGTCACAAACAAGGCTATGGCGCCCGAGATCATaGAGGTGCTCGAGGCCTCGC +
Preference number: 4 (lower is better)
Translates to: KRSPPNSTCKSTRSQTRLWRPRS*RCSRPR
Trigger: GCGAGGCCTCGAGCACCTCCATGATCTCGGGCGCCA...TAGCCTTGTTTGTGACCTTGTGGATTTGCATGTACTGTTTGGAGGAGATCTCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
CDS-3UTR CCA 90 bp AATTCACATACATGCAGGGACAAGAGAGTTAGGCCTTCATTTCTTCTAAGACTGGGCTCACCGGCTCGGTaGTGGGTTGGTACGGGCTGC +
Preference number: 4 (lower is better)
Translates to: NSHTCRDKRVRPSFLLRLGSPAR*WVGTGC
Trigger: GCAGCCCGTACCAACCCACCACCGAGCCGGTGAGCC...CAGTCTTAGAAGAAATGAAGGCCTAACTCTCTTGTCCCTGCATGTATGTGAATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
CDS-3UTR GCA 90 bp TGTCCATACAATCGAAGTGTGGGTTTGAGCGTGCCACTCTGTACCATGAGGCCAGCTCACTGCATAGGCTaGTGTTGCCAAGAAGCCAAA +
Preference number: 4 (lower is better)
Translates to: CPYNRSVGLSVPLCTMRPAHCIG*CCQEAK
Trigger: TTTGGCTTCTTGGCAACAGCAGCCTATGCAGTGAGC...TGGCCTCATGGTACAGAGTGGCACGCTCAAACCCACACTTCGATTGTATGGACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
CDS-3UTR GCA 90 bp TGTCTCCACGAACACACCACATGTCCCCAACAACTGCATGTCTTGCCATGTTTTGCATGGCCAGGAATGTaGTCACTGCATAGGCTGCTG +
Preference number: 4 (lower is better)
Translates to: CLHEHTTCPQQLHVLPCFAWPGM*SLHRLL
Trigger: CAGCAGCCTATGCAGTGAGCACATTCCTGGCCATGC...AAAACATGGCAAGACATGCAGTTGTTGGGGACATGTGGTGTGTTCGTGGAGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
CDS-3UTR GCA 90 bp TTCTTGACTGCAGTCTTACCCTCTGAGCCTTTGGCAGGGAAGGTAGAGAAGACTCATCTCTCGACTCGGTaGGAGCTCGGATGTAGTCAT +
Preference number: 4 (lower is better)
Translates to: FLTAVLPSEPLAGKVEKTHLSTR*ELGCSH
Trigger: ATGACTACATCCGAGCTCGCACCGAGTCGAGAGATG...AGTCTTCTCTACCTTCCCTGCCAAAGGCTCAGAGGGTAAGACTGCAGTCAAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
CDS-3UTR CCA 90 bp AGTATGGACCACAGGAAGGTGATTCACGTGAGAAAGAATCAAGTGATTTCTCAGGTTGGTACGGGCTGCTaGCGCCCGAGATCATGGAGG +
Preference number: 4 (lower is better)
Translates to: SMDHRKVIHVRKNQVISQVGTGC*RPRSWR
Trigger: CCTCCATGATCTCGGGCGCCAGCAGCCCGTACCAAC...CTGAGAAATCACTTGATTCTTTCTCACGTGAATCACCTTCCTGTGGTCCATACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
CDS-3UTR GCA 90 bp CGTGGAACATCCGTGGGAGGACGTGTCCTGGTGCAGATTCAAGTATTCTCAAATCCCAGTCACCACAAATaGACTGCAGCTTACGAACTC +
Preference number: 4 (lower is better)
Translates to: RGTSVGGRVLVQIQVFSNPSHHK*TAAYEL
Trigger: GAGTTCGTAAGCTGCAGTGCATTTGTGGTGACTGGG...ATTTGAGAATACTTGAATCTGCACCAGGACACGTCCTCCCACGGATGTTCCACG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
CDS-3UTR TCA 90 bp TGTCTCCACGAACACACCACATGTCCCCAACAACTGCATGTCTTGCCATGTTTTTGGGGGATCCTCATATaGAGGTTGAGGCTGAAGAGA +
Preference number: 4 (lower is better)
Translates to: CLHEHTTCPQQLHVLPCFWGILI*RLRLKR
Trigger: TCTCTTCAGCCTCAACCTTCATATGAGGATCCCCCA...AAAACATGGCAAGACATGCAGTTGTTGGGGACATGTGGTGTGTTCGTGGAGACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
CDS-3UTR GCA 90 bp AGGTTGGAAAAGCACAATGTGCACAATGTGCCGACTCACTCAACTCGGCCAGCATGCATAGGCTGCTGTTaGCAAGAAGCCAAATATCAC +
Preference number: 4 (lower is better)
Translates to: RLEKHNVHNVPTHSTRPACIGCC*QEAKYH
Trigger: GTGATATTTGGCTTCTTGGCAACAGCAGCCTATGCA...TGCTGGCCGAGTTGAGTGAGTCGGCACATTGTGCACATTGTGCTTTTCCAACCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR CAA 72 bp GAAGGCCTCCTTTCATCACAGGATAAAACGGGTTTATaGAAGGGACTTGGGAAAGCGAGCAGAAACCCCATC +
Preference number: 4 (lower is better)
Translates to: EGLLSSQDKTGL*KGLGKASRNPI
Trigger: GATGGGGTTTCTGCTCGCTTTCCCAAGTCCCTTCAATAAACCCGTTTTATCCTGTGATGAAAGGAGGCCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
CDS-3UTR GCA 90 bp ACACTGATGCTATTGTCTTTCAGAGACGATGTCTACATAAACATTGATAGGTCATGGGTTGGTACGGGCTaGTGGCGCCCGAGATCATGG +
Preference number: 4 (lower is better)
Translates to: TLMLLSFRDDVYINIDRSWVGTG*WRPRSW
Trigger: CCATGATCTCGGGCGCCAGCAGCCCGTACCAACCCA...TGACCTATCAATGTTTATGTAGACATCGTCTCTGAAAGACAATAGCATCAGTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
CDS-3UTR CCA 90 bp AAGAGATCTCCTCCAAACAGTACATGCAAATCCACAAGGTCACAAACAAGGCTATCCGCTCCGGTTTTATaGTTTAGAGCAGCCAACACG +
Preference number: 4 (lower is better)
Translates to: KRSPPNSTCKSTRSQTRLSAPVL*FRAANT
Trigger: CGTGTTGGCTGCTCTAAACCATAAAACCGGAGCGGA...TAGCCTTGTTTGTGACCTTGTGGATTTGCATGTACTGTTTGGAGGAGATCTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
CDS-3UTR CCA 90 bp ACACTGATGCTATTGTCTTTCAGAGACGATGTCTACATAAACATTGATAGGTCATCATTAGTGCTCTGCTaGCGGACGCTGACTCTCCAT +
Preference number: 4 (lower is better)
Translates to: TLMLLSFRDDVYINIDRSSLVLC*RTLTLH
Trigger: ATGGAGAGTCAGCGTCCGCCAGCAGAGCACTAATGA...TGACCTATCAATGTTTATGTAGACATCGTCTCTGAAAGACAATAGCATCAGTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR CAA 72 bp GGTTGCTGTACAAACCTCAAATCTATTACCTTCTGTTaGCACAGAGGCACAACAGGAAAGATACAGGTGTCT +
Preference number: 4 (lower is better)
Translates to: GCCTNLKSITFC*HRGTTGKIQVS
Trigger: AGACACCTGTATCTTTCCTGTTGTGCCTCTGTGCAAACAGAAGGTAATAGATTTGAGGTTTGTACAGCAACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR CAA 72 bp CTCTTAGGCCCTAAGACACCACCACATTATCATTTATaGGTATTCATGGTCTCAATGGGTCTCAGGATCATT +
Preference number: 4 (lower is better)
Translates to: LLGPKTPPHYHL*VFMVSMGLRII
Trigger: AATGATCCTGAGACCCATTGAGACCATGAATACCAATAAATGATAATGTGGTGGTGTCTTAGGGCCTAAGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
3UTR CAA 72 bp ATAAATATTACAATGATTCTGTCACTAAGATGCAAATaGCTCTCAAGTCTCTTAGGCCCTAAGACACCACCA +
Preference number: 4 (lower is better)
Translates to: INITMILSLRCK*LSSLLGPKTPP
Trigger: TGGTGGTGTCTTAGGGCCTAAGAGACTTGAGAGCAATTTGCATCTTAGTGACAGAATCATTGTAATATTTAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
CDS CCA 90 bp AGGCCGGCCAGCCCGCGGCGCTGGCTCACCGGCTCGGTGGTGGGTTaGTACGGGCTGCTGGCGCCCGAGATCATGGAGGTGCTCGAGGCC +
Preference number: 5 (lower is better)
Translates to: RPASPRRWLTGSVVG*YGLLAPEIMEVLEA
Trigger: GGCCTCGAGCACCTCCATGATCTCGGGCGCCAGCAGCCCGTACCAACCCACCACCGAGCCGGTGAGCCAGCGCCGCGGGCTGGCCGGCCT
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
CDS GCA 90 bp GCCCGCGGCGCTGGCTCACCGGCTCGGTGGTGGGTTGGTACGGGCTaGTGGCGCCCGAGATCATGGAGGTGCTCGAGGCCTCGCCCTCGA +
Preference number: 5 (lower is better)
Translates to: ARGAGSPARWWVGTG*WRPRSWRCSRPRPR
Trigger: TCGAGGGCGAGGCCTCGAGCACCTCCATGATCTCGGGCGCCAGCAGCCCGTACCAACCCACCACCGAGCCGGTGAGCCAGCGCCGCGGGC
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
CDS GCA 90 bp CGGTGGTGGGTTGGTACGGGCTGCTGGCGCCCGAGATCATGGAGGTaGTCGAGGCCTCGCCCTCGAAGCCGTCCAGCTCCTCGCCGCCCC +
Preference number: 5 (lower is better)
Translates to: RWWVGTGCWRPRSWR*SRPRPRSRPAPRRP
Trigger: GGGGCGGCGAGGAGCTGGACGGCTTCGAGGGCGAGGCCTCGAGCACCTCCATGATCTCGGGCGCCAGCAGCCCGTACCAACCCACCACCG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
CDS CCA 90 bp CGCGGCGCTGGCTCACCGGCTCGGTGGTGGGTTGGTACGGGCTGCTaGCGCCCGAGATCATGGAGGTGCTCGAGGCCTCGCCCTCGAAGC +
Preference number: 5 (lower is better)
Translates to: RGAGSPARWWVGTGC*RPRSWRCSRPRPRS
Trigger: GCTTCGAGGGCGAGGCCTCGAGCACCTCCATGATCTCGGGCGCCAGCAGCCCGTACCAACCCACCACCGAGCCGGTGAGCCAGCGCCGCG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
CDS CCA 90 bp CCGGCTCGGTGGTGGGTTGGTACGGGCTGCTGGCGCCCGAGATCATaGAGGTGCTCGAGGCCTCGCCCTCGAAGCCGTCCAGCTCCTCGC +
Preference number: 5 (lower is better)
Translates to: PARWWVGTGCWRPRS*RCSRPRPRSRPAPR
Trigger: GCGAGGAGCTGGACGGCTTCGAGGGCGAGGCCTCGAGCACCTCCATGATCTCGGGCGCCAGCAGCCCGTACCAACCCACCACCGAGCCGG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
CDS-3UTR CAA 90 bp GCCACTCTTGGCCATCCAGCCTTCCAACACTGCTCTTCCCTGACCGATGCAGAGATCACTTGGGCGACCTaGAGGCGGCCGAGCGCGCCG +
Preference number: 5 (lower is better)
Translates to: ATLGHPAFQHCSSLTDAEITWAT*RRPSAP
Trigger: CGGCGCGCTCGGCCGCCTCAAGGTCGCCCAAGTGAT...CTCTGCATCGGTCAGGGAAGAGCAGTGTTGGAAGGCTGGATGGCCAAGAGTGGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
CDS-3UTR CAA 90 bp CCTGCTGTGGGGTTTGACAATAGCCACTCTTGGCCATCCAGCCTTCCAACACTGCGGCTCGGTGGTGGGTaGGTACGGGCTGCTGGCGCC +
Preference number: 5 (lower is better)
Translates to: PAVGFDNSHSWPSSLPTLRLGGG*VRAAGA
Trigger: GGCGCCAGCAGCCCGTACCAACCCACCACCGAGCCG...CAGTGTTGGAAGGCTGGATGGCCAAGAGTGGCTATTGTCAAACCCCACAGCAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
CDS-3UTR CAA 90 bp CCTGCTGTGGGGTTTGACAATAGCCACTCTTGGCCATCCAGCCTTCCAACACTGCAAGGCCAGAATCACTaGGGCGACCTTGAGGCGGCC +
Preference number: 5 (lower is better)
Translates to: PAVGFDNSHSWPSSLPTLQGQNH*GDLEAA
Trigger: GGCCGCCTCAAGGTCGCCCAAGTGATTCTGGCCTTG...CAGTGTTGGAAGGCTGGATGGCCAAGAGTGGCTATTGTCAAACCCCACAGCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
CDS GCA 90 bp GCGGACGCTGACTCTCCATTTCTGCATGGCCAGGAATGTGCTCACTaGATAGGCTGCTGTTGCCAAGAAGCCAAATATCACGGCAGCAAT +
Preference number: 5 (lower is better)
Translates to: ADADSPFLHGQECAH*IGCCCQEAKYHGSN
Trigger: ATTGCTGCCGTGATATTTGGCTTCTTGGCAACAGCAGCCTATGCAGTGAGCACATTCCTGGCCATGCAGAAATGGAGAGTCAGCGTCCGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
CDS GCA 90 bp GACTCTCCATTTCTGCATGGCCAGGAATGTGCTCACTGCATAGGCTaGTGTTGCCAAGAAGCCAAATATCACGGCAGCAATTTCCGCTCC +
Preference number: 5 (lower is better)
Translates to: DSPFLHGQECAHCIG*CCQEAKYHGSNFRS
Trigger: GGAGCGGAAATTGCTGCCGTGATATTTGGCTTCTTGGCAACAGCAGCCTATGCAGTGAGCACATTCCTGGCCATGCAGAAATGGAGAGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
CDS-3UTR CAA 90 bp GTAAGTCTTCCTGCCAAGAGTCCTAGAAGGGCCCTAGGGTCCCTCTCAGTGAGACTGCATAGGCTGCTGTaGCCAAGAAGCCAAATATCA +
Preference number: 5 (lower is better)
Translates to: VSLPAKSPRRALGSLSVRLHRLL*PRSQIS
Trigger: TGATATTTGGCTTCTTGGCAACAGCAGCCTATGCAG...TCTCACTGAGAGGGACCCTAGGGCCCTTCTAGGACTCTTGGCAGGAAGACTTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
CDS GCA 90 bp CCATTTCTGCATGGCCAGGAATGTGCTCACTGCATAGGCTGCTGTTaGCAAGAAGCCAAATATCACGGCAGCAATTTCCGCTCCGGTTTT +
Preference number: 5 (lower is better)
Translates to: PFLHGQECAHCIGCC*QEAKYHGSNFRSGF
Trigger: AAAACCGGAGCGGAAATTGCTGCCGTGATATTTGGCTTCTTGGCAACAGCAGCCTATGCAGTGAGCACATTCCTGGCCATGCAGAAATGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
CDS-3UTR CAA 90 bp TGTCCATACAATCGAAGTGTGGGTTTGAGCGTGCCACTCTGTACCATGAGGCCATCTGTTAGATTCCAGTaGATCTGGGGGATCCTCATA +
Preference number: 5 (lower is better)
Translates to: CPYNRSVGLSVPLCTMRPSVRFQ*IWGILI
Trigger: TATGAGGATCCCCCAGATCAACTGGAATCTAACAGA...TGGCCTCATGGTACAGAGTGGCACGCTCAAACCCACACTTCGATTGTATGGACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
CDS-3UTR CAA 90 bp TGTCCATACAATCGAAGTGTGGGTTTGAGCGTGCCACTCTGTACCATGAGGCCAGTGCTGAGTCCAGTGTaGACCAAATCTGTTAGATTC +
Preference number: 5 (lower is better)
Translates to: CPYNRSVGLSVPLCTMRPVLSPV*TKSVRF
Trigger: GAATCTAACAGATTTGGTCAACACTGGACTCAGCAC...TGGCCTCATGGTACAGAGTGGCACGCTCAAACCCACACTTCGATTGTATGGACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
CDS CAA 90 bp CAGGCCGGCCAGCCCGCGGCGCTGGCTCACCGGCTCGGTGGTGGGTaGGTACGGGCTGCTGGCGCCCGAGATCATGGAGGTGCTCGAGGC +
Preference number: 6 (lower is better)
Translates to: QAGQPAALAHRLGGG*VRAAGARDHGGARG
Trigger: GCCTCGAGCACCTCCATGATCTCGGGCGCCAGCAGCCCGTACCAACCCACCACCGAGCCGGTGAGCCAGCGCCGCGGGCTGGCCGGCCTG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
CDS CCA 72 bp AGCCCGCGGCGCTGGCTCACCGGCTCGGTGGTGGGTTaGTACGGGCTGCTGGCGCCCGAGATCATGGAGGTG +
Preference number: 6 (lower is better)
Translates to: SPRRWLTGSVVG*YGLLAPEIMEV
Trigger: CACCTCCATGATCTCGGGCGCCAGCAGCCCGTACCAACCCACCACCGAGCCGGTGAGCCAGCGCCGCGGGCT
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
CDS CCA 72 bp GGCTCACCGGCTCGGTGGTGGGTTGGTACGGGCTGCTaGCGCCCGAGATCATGGAGGTGCTCGAGGCCTCGC +
Preference number: 6 (lower is better)
Translates to: GSPARWWVGTGC*RPRSWRCSRPR
Trigger: GCGAGGCCTCGAGCACCTCCATGATCTCGGGCGCCAGCAGCCCGTACCAACCCACCACCGAGCCGGTGAGCC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
CDS GCA 72 bp GCTGGCTCACCGGCTCGGTGGTGGGTTGGTACGGGCTaGTGGCGCCCGAGATCATGGAGGTGCTCGAGGCCT +
Preference number: 6 (lower is better)
Translates to: AGSPARWWVGTG*WRPRSWRCSRP
Trigger: AGGCCTCGAGCACCTCCATGATCTCGGGCGCCAGCAGCCCGTACCAACCCACCACCGAGCCGGTGAGCCAGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
CDS GCA 72 bp GTTGGTACGGGCTGCTGGCGCCCGAGATCATGGAGGTaGTCGAGGCCTCGCCCTCGAAGCCGTCCAGCTCCT +
Preference number: 6 (lower is better)
Translates to: VGTGCWRPRSWR*SRPRPRSRPAP
Trigger: AGGAGCTGGACGGCTTCGAGGGCGAGGCCTCGAGCACCTCCATGATCTCGGGCGCCAGCAGCCCGTACCAAC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
CDS CAA 90 bp CATGATAGTCTCGATGCAGATAAATGCAATCAAGGCCAGAATCACTaGGGCGACCTTGAGGCGGCCGAGCGCGCCGCGCAGGTAGTCCGG +
Preference number: 6 (lower is better)
Translates to: HDSLDADKCNQGQNH*GDLEAAERAAQVVR
Trigger: CCGGACTACCTGCGCGGCGCGCTCGGCCGCCTCAAGGTCGCCCAAGTGATTCTGGCCTTGATTGCATTTATCTGCATCGAGACTATCATG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
CDS CAA 90 bp TCCATTTCTGCATGGCCAGGAATGTGCTCACTGCATAGGCTGCTGTaGCCAAGAAGCCAAATATCACGGCAGCAATTTCCGCTCCGGTTT +
Preference number: 6 (lower is better)
Translates to: SISAWPGMCSLHRLL*PRSQISRQQFPLRF
Trigger: AAACCGGAGCGGAAATTGCTGCCGTGATATTTGGCTTCTTGGCAACAGCAGCCTATGCAGTGAGCACATTCCTGGCCATGCAGAAATGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
CDS GCA 72 bp CGGGGAGCACTCCATGATAGTCTCGATGCAGATAAATaGAATCAAGGCCAGAATCACTTGGGCGACCTTGAG +
Preference number: 6 (lower is better)
Translates to: RGALHDSLDADK*NQGQNHLGDLE
Trigger: CTCAAGGTCGCCCAAGTGATTCTGGCCTTGATTGCATTTATCTGCATCGAGACTATCATGGAGTGCTCCCCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
CDS GCA 72 bp AGAGAATCAGCAGGACCCCAGTCACCACAAATGCACTaGAGCTTACGAACTCAAAGAAGTAGAGGCCTTCGC +
Preference number: 6 (lower is better)
Translates to: RESAGPQSPQMH*SLRTQRSRGLR
Trigger: GCGAAGGCCTCTACTTCTTTGAGTTCGTAAGCTGCAGTGCATTTGTGGTGACTGGGGTCCTGCTGATTCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
CDS GCA 72 bp GACTCTCCATTTCTGCATGGCCAGGAATGTGCTCACTaGATAGGCTGCTGTTGCCAAGAAGCCAAATATCAC +
Preference number: 6 (lower is better)
Translates to: DSPFLHGQECAH*IGCCCQEAKYH
Trigger: GTGATATTTGGCTTCTTGGCAACAGCAGCCTATGCAGTGAGCACATTCCTGGCCATGCAGAAATGGAGAGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2
CDS CCA 72 bp CCAAATATCACGGCAGCAATTTCCGCTCCGGTTTTATaGTTTAGAGCAGCCAACACGATTGAGGCGATAAAG +
Preference number: 6 (lower is better)
Translates to: PNITAAISAPVL*FRAANTIEAIK
Trigger: CTTTATCGCCTCAATCGTGTTGGCTGCTCTAAACCATAAAACCGGAGCGGAAATTGCTGCCGTGATATTTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179802.2