Pregenerated sensors for CMTM2B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035785Ensembl transcript IDs: ENSMUST00000041973.7, ENSMUST00000212912.2
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | TTCCAGGATGTCTTTATTGATGGAGAACTCTGCTGGAAATCTGGCAAAAGAGAGGTAGAAAGGCCTGGCTaGAGAGTTCGCAGCTGTCCC | + |
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Preference number: 2 (lower is better) Translates to: FQDVFIDGELCWKSGKREVERPG*RVRSCP Trigger: GGGACAGCTGCGAACTCTGCAGCCAGGCCTTTCTAC...CTCTCTTTTGCCAGATTTCCAGCAGAGTTCTCCATCAATAAAGACATCCTGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041973.7 ENSMUST00000212912.2 |
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| CDS-3UTR GCA 90 bp | AGTAGAAAGGCCTGGCTGCAGAGTTCGCAGCTGTCCCTGACCACAGGTGTGGCTTCTGCCAGTTCCCTTTaGCTCTCCTCCTCATCCTCT | + |
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Preference number: 4 (lower is better) Translates to: SRKAWLQSSQLSLTTGVASASSL*LSSSSS Trigger: AGAGGATGAGGAGGAGAGGCAAAGGGAACTGGCAGA...AGCCACACCTGTGGTCAGGGACAGCTGCGAACTCTGCAGCCAGGCCTTTCTACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041973.7 ENSMUST00000212912.2 |
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| CDS-3UTR GCA 90 bp | AGTAGAAAGGCCTGGCTGCAGAGTTCGCAGCTGTCCCTGACCACAGGTGTGGCTCCTCTTCGCTTTCTCTaGCAGTTCCCTTTGCCTCTC | + |
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Preference number: 4 (lower is better) Translates to: SRKAWLQSSQLSLTTGVAPLRFL*QFPLPL Trigger: GAGAGGCAAAGGGAACTGGCAGAGAAAGCGAAGAGG...AGCCACACCTGTGGTCAGGGACAGCTGCGAACTCTGCAGCCAGGCCTTTCTACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041973.7 ENSMUST00000212912.2 |
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| CDS-3UTR CCA 90 bp | AGTAGAAAGGCCTGGCTGCAGAGTTCGCAGCTGTCCCTGACCACAGGTGTGGCTCCTCCTCATCCTCTTTaGCAGCCAGCATTAAAAGGA | + |
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Preference number: 4 (lower is better) Translates to: SRKAWLQSSQLSLTTGVAPPHPL*QPALKG Trigger: TCCTTTTAATGCTGGCTGCCAAAGAGGATGAGGAGG...AGCCACACCTGTGGTCAGGGACAGCTGCGAACTCTGCAGCCAGGCCTTTCTACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041973.7 ENSMUST00000212912.2 |
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| CDS-3UTR TCA 90 bp | AGTAGAAAGGCCTGGCTGCAGAGTTCGCAGCTGTCCCTGACCACAGGTGTGGCTCTTTATTGCTGTCTCTaGATTCCCACTTGTAGCCTT | + |
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Preference number: 4 (lower is better) Translates to: SRKAWLQSSQLSLTTGVALYCCL*IPTCSL Trigger: AAGGCTACAAGTGGGAATTCAGAGACAGCAATAAAG...AGCCACACCTGTGGTCAGGGACAGCTGCGAACTCTGCAGCCAGGCCTTTCTACT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041973.7 |
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| CDS-3UTR CCA 90 bp | AGTAGAAAGGCCTGGCTGCAGAGTTCGCAGCTGTCCCTGACCACAGGTGTGGCTTTACAATTGGATGAGTaGCCACTCTTTGGAAACAGA | + |
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Preference number: 4 (lower is better) Translates to: SRKAWLQSSQLSLTTGVALQLDE*PLFGNR Trigger: TCTGTTTCCAAAGAGTGGCCACTCATCCAATTGTAA...AGCCACACCTGTGGTCAGGGACAGCTGCGAACTCTGCAGCCAGGCCTTTCTACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041973.7 ENSMUST00000212912.2 |
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| CDS-3UTR GCA 90 bp | AGGATGTCTTTATTGATGGAGAACTCTGCTGGAAATCTGGCAAAAGAGAGAGAGTTTCATCTTTCTTCTTaGCACCTGTCCGGGCTCGCG | + |
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Preference number: 4 (lower is better) Translates to: RMSLLMENSAGNLAKEREFHLSS*HLSGLA Trigger: CGCGAGCCCGGACAGGTGGCAAGAAGAAAGATGAAA...CTCTCTCTCTTTTGCCAGATTTCCAGCAGAGTTCTCCATCAATAAAGACATCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041973.7 |
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| CDS-3UTR GCA 90 bp | GTCTTTATTGATGGAGAACTCTGCTGGAAATCTGGCAAAAGAGAGAGAGTAGAACAGAGACTTGCACTCTaGATGTCCCTGCGCCCAGAA | + |
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Preference number: 4 (lower is better) Translates to: VFIDGELCWKSGKRERVEQRLAL*MSLRPE Trigger: TTCTGGGCGCAGGGACATGCAGAGTGCAAGTCTCTG...TTCTACTCTCTCTCTTTTGCCAGATTTCCAGCAGAGTTCTCCATCAATAAAGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041973.7 |
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| CDS-3UTR GCA 90 bp | CAGGATGTCTTTATTGATGGAGAACTCTGCTGGAAATCTGGCAAAAGAGAGAGACCTCTTCGCTTTCTCTaGCAGTTCCCTTTGCCTCTC | + |
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Preference number: 4 (lower is better) Translates to: QDVFIDGELCWKSGKRERPLRFL*QFPLPL Trigger: GAGAGGCAAAGGGAACTGGCAGAGAAAGCGAAGAGG...TCTCTCTCTTTTGCCAGATTTCCAGCAGAGTTCTCCATCAATAAAGACATCCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041973.7 ENSMUST00000212912.2 |
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| CDS-3UTR GCA 90 bp | AGGATGTCTTTATTGATGGAGAACTCTGCTGGAAATCTGGCAAAAGAGAGAGAGAGGAGTTTCGGGTCCTaGTTCTTGCCTTTCCTGTCT | + |
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Preference number: 4 (lower is better) Translates to: RMSLLMENSAGNLAKERERSFGS*FLPFLS Trigger: AGACAGGAAAGGCAAGAAGCAGGACCCGAAACTCCT...CTCTCTCTCTTTTGCCAGATTTCCAGCAGAGTTCTCCATCAATAAAGACATCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041973.7 ENSMUST00000212912.2 |
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| CDS-3UTR GCA 90 bp | TCCAGGATGTCTTTATTGATGGAGAACTCTGCTGGAAATCTGGCAAAAGAGAGAAGGAGTTTCGGGTCCTaGTTCTTGCCTTTCCTGTCT | + |
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Preference number: 4 (lower is better) Translates to: SRMSLLMENSAGNLAKERRSFGS*FLPFLS Trigger: AGACAGGAAAGGCAAGAAGCAGGACCCGAAACTCCT...TCTCTCTTTTGCCAGATTTCCAGCAGAGTTCTCCATCAATAAAGACATCCTGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041973.7 ENSMUST00000212912.2 |
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| CDS-3UTR GCA 90 bp | GTCTTTATTGATGGAGAACTCTGCTGGAAATCTGGCAAAAGAGAGAGAGTAGAATCTGCCAGTTCCCTTTaGCTCTCCTCCTCATCCTCT | + |
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Preference number: 4 (lower is better) Translates to: VFIDGELCWKSGKRERVESASSL*LSSSSS Trigger: AGAGGATGAGGAGGAGAGGCAAAGGGAACTGGCAGA...TTCTACTCTCTCTCTTTTGCCAGATTTCCAGCAGAGTTCTCCATCAATAAAGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041973.7 ENSMUST00000212912.2 |
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| CDS-3UTR TCA 90 bp | AGGATGTCTTTATTGATGGAGAACTCTGCTGGAAATCTGGCAAAAGAGAGAGAGCCCACTTGTAGCCTTTaGACCCTCTTCTTTCATCTT | + |
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Preference number: 4 (lower is better) Translates to: RMSLLMENSAGNLAKEREPTCSL*TLFFHL Trigger: AAGATGAAAGAAGAGGGTTCAAAGGCTACAAGTGGG...CTCTCTCTCTTTTGCCAGATTTCCAGCAGAGTTCTCCATCAATAAAGACATCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041973.7 |
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| CDS-3UTR CCA 90 bp | GTCTTTATTGATGGAGAACTCTGCTGGAAATCTGGCAAAAGAGAGAGAGTAGAACCTCCTCATCCTCTTTaGCAGCCAGCATTAAAAGGA | + |
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Preference number: 4 (lower is better) Translates to: VFIDGELCWKSGKRERVEPPHPL*QPALKG Trigger: TCCTTTTAATGCTGGCTGCCAAAGAGGATGAGGAGG...TTCTACTCTCTCTCTTTTGCCAGATTTCCAGCAGAGTTCTCCATCAATAAAGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041973.7 ENSMUST00000212912.2 |
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| CDS-3UTR TCA 90 bp | TCCAGGATGTCTTTATTGATGGAGAACTCTGCTGGAAATCTGGCAAAAGAGAGAAGGATTACAATTGGATaGGTGGCCACTCTTTGGAAA | + |
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Preference number: 4 (lower is better) Translates to: SRMSLLMENSAGNLAKERRITIG*VATLWK Trigger: TTTCCAAAGAGTGGCCACTCATCCAATTGTAATCCT...TCTCTCTTTTGCCAGATTTCCAGCAGAGTTCTCCATCAATAAAGACATCCTGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041973.7 ENSMUST00000212912.2 |
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| CDS-3UTR TCA 90 bp | AGGATGTCTTTATTGATGGAGAACTCTGCTGGAAATCTGGCAAAAGAGAGAGAGAGGATTACAATTGGATaGGTGGCCACTCTTTGGAAA | + |
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Preference number: 4 (lower is better) Translates to: RMSLLMENSAGNLAKERERITIG*VATLWK Trigger: TTTCCAAAGAGTGGCCACTCATCCAATTGTAATCCT...CTCTCTCTCTTTTGCCAGATTTCCAGCAGAGTTCTCCATCAATAAAGACATCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041973.7 ENSMUST00000212912.2 |
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| CDS-3UTR TCA 90 bp | CAGGATGTCTTTATTGATGGAGAACTCTGCTGGAAATCTGGCAAAAGAGAGAGAGAAGAAAGCACAGATTaGCAGTTCCATAGTAAGCAG | + |
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Preference number: 4 (lower is better) Translates to: QDVFIDGELCWKSGKREREESTD*QFHSKQ Trigger: CTGCTTACTATGGAACTGTCAATCTGTGCTTTCTTC...TCTCTCTCTTTTGCCAGATTTCCAGCAGAGTTCTCCATCAATAAAGACATCCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041973.7 ENSMUST00000212912.2 |
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| CDS-3UTR CCA 90 bp | CAGGATGTCTTTATTGATGGAGAACTCTGCTGGAAATCTGGCAAAAGAGAGAGATTACAATTGGATGAGTaGCCACTCTTTGGAAACAGA | + |
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Preference number: 4 (lower is better) Translates to: QDVFIDGELCWKSGKRERLQLDE*PLFGNR Trigger: TCTGTTTCCAAAGAGTGGCCACTCATCCAATTGTAA...TCTCTCTCTTTTGCCAGATTTCCAGCAGAGTTCTCCATCAATAAAGACATCCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041973.7 ENSMUST00000212912.2 |
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| CDS-3UTR TCA 90 bp | TTCCAGGATGTCTTTATTGATGGAGAACTCTGCTGGAAATCTGGCAAAAGAGAGTTAAATTGTCTCCTCTaGAGACACAGGTCAATGATA | + |
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Preference number: 4 (lower is better) Translates to: FQDVFIDGELCWKSGKRELNCLL*RHRSMI Trigger: TATCATTGACCTGTGTCTTCAGAGGAGACAATTTAA...CTCTCTTTTGCCAGATTTCCAGCAGAGTTCTCCATCAATAAAGACATCCTGGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041973.7 ENSMUST00000212912.2 |
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| CDS-3UTR GCA 90 bp | TTCCAGGATGTCTTTATTGATGGAGAACTCTGCTGGAAATCTGGCAAAAGAGAGTGGCAATTCTCGTCTTaGTTCAAGAGCAAAGAATAT | + |
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Preference number: 4 (lower is better) Translates to: FQDVFIDGELCWKSGKREWQFSS*FKSKEY Trigger: ATATTCTTTGCTCTTGAAGCAAGACGAGAATTGCCA...CTCTCTTTTGCCAGATTTCCAGCAGAGTTCTCCATCAATAAAGACATCCTGGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041973.7 |
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| CDS-3UTR TCA 90 bp | GTCTTTATTGATGGAGAACTCTGCTGGAAATCTGGCAAAAGAGAGAGAGTAGAATTAAATTGTCTCCTCTaGAGACACAGGTCAATGATA | + |
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Preference number: 4 (lower is better) Translates to: VFIDGELCWKSGKRERVELNCLL*RHRSMI Trigger: TATCATTGACCTGTGTCTTCAGAGGAGACAATTTAA...TTCTACTCTCTCTCTTTTGCCAGATTTCCAGCAGAGTTCTCCATCAATAAAGAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041973.7 ENSMUST00000212912.2 |
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| CDS GCA 90 bp | CCAGGGTCCATCGACTCCCTCTTCGCTTTCTCTGCCAGTTCCCTTTaGCTCTCCTCCTCATCCTCTTTGGCAGCCAGCATTAAAAGGAGT | + |
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Preference number: 5 (lower is better) Translates to: PGSIDSLFAFSASSL*LSSSSSLAASIKRS Trigger: ACTCCTTTTAATGCTGGCTGCCAAAGAGGATGAGGAGGAGAGGCAAAGGGAACTGGCAGAGAAAGCGAAGAGGGAGTCGATGGACCCTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041973.7 ENSMUST00000212912.2 |
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| CDS-3UTR CAA 90 bp | AGTAGAAAGGCCTGGCTGCAGAGTTCGCAGCTGTCCCTGACCACAGGTGTGGCTGCAGCAGGATTACAATaGGATGAGTGGCCACTCTTT | + |
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Preference number: 5 (lower is better) Translates to: SRKAWLQSSQLSLTTGVAAAGLQ*DEWPLF Trigger: AAAGAGTGGCCACTCATCCAATTGTAATCCTGCTGC...AGCCACACCTGTGGTCAGGGACAGCTGCGAACTCTGCAGCCAGGCCTTTCTACT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041973.7 ENSMUST00000212912.2 |
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| CDS-3UTR CAA 90 bp | AGGATGTCTTTATTGATGGAGAACTCTGCTGGAAATCTGGCAAAAGAGAGAGAGCTCTGCCAGTTCCCTTaGCCTCTCCTCCTCATCCTC | + |
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Preference number: 5 (lower is better) Translates to: RMSLLMENSAGNLAKERELCQFP*PLLLIL Trigger: GAGGATGAGGAGGAGAGGCAAAGGGAACTGGCAGAG...CTCTCTCTCTTTTGCCAGATTTCCAGCAGAGTTCTCCATCAATAAAGACATCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041973.7 ENSMUST00000212912.2 |
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| CDS TCA 90 bp | GCACAGATTGACAGTTCCATAGTAAGCAGCAGGATTACAATTGGATaGGTGGCCACTCTTTGGAAACAGACCATTGCAGCAATGAGGAGG | + |
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Preference number: 5 (lower is better) Translates to: AQIDSSIVSSRITIG*VATLWKQTIAAMRR Trigger: CCTCCTCATTGCTGCAATGGTCTGTTTCCAAAGAGTGGCCACTCATCCAATTGTAATCCTGCTGCTTACTATGGAACTGTCAATCTGTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041973.7 |
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| CDS-3UTR CAA 90 bp | CAGGATGTCTTTATTGATGGAGAACTCTGCTGGAAATCTGGCAAAAGAGAGAGAATGAGTGGCCACTCTTaGGAAACAGACCATTGCAGC | + |
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Preference number: 5 (lower is better) Translates to: QDVFIDGELCWKSGKRERMSGHS*ETDHCS Trigger: GCTGCAATGGTCTGTTTCCAAAGAGTGGCCACTCAT...TCTCTCTCTTTTGCCAGATTTCCAGCAGAGTTCTCCATCAATAAAGACATCCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041973.7 ENSMUST00000212912.2 |
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| CDS-3UTR CAA 90 bp | TTCCAGGATGTCTTTATTGATGGAGAACTCTGCTGGAAATCTGGCAAAAGAGAGTCCTCCTCATCCTCTTaGGCAGCCAGCATTAAAAGG | + |
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Preference number: 5 (lower is better) Translates to: FQDVFIDGELCWKSGKRESSSSS*AASIKR Trigger: CCTTTTAATGCTGGCTGCCAAAGAGGATGAGGAGGA...CTCTCTTTTGCCAGATTTCCAGCAGAGTTCTCCATCAATAAAGACATCCTGGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041973.7 ENSMUST00000212912.2 |
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| CDS-3UTR CAA 90 bp | GTCTTTATTGATGGAGAACTCTGCTGGAAATCTGGCAAAAGAGAGAGAGTAGAAATGAGTGGCCACTCTTaGGAAACAGACCATTGCAGC | + |
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Preference number: 5 (lower is better) Translates to: VFIDGELCWKSGKRERVEMSGHS*ETDHCS Trigger: GCTGCAATGGTCTGTTTCCAAAGAGTGGCCACTCAT...TTCTACTCTCTCTCTTTTGCCAGATTTCCAGCAGAGTTCTCCATCAATAAAGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041973.7 ENSMUST00000212912.2 |
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| CDS-3UTR CAA 90 bp | GTCTTTATTGATGGAGAACTCTGCTGGAAATCTGGCAAAAGAGAGAGAGTAGAATCCTCCTCATCCTCTTaGGCAGCCAGCATTAAAAGG | + |
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Preference number: 5 (lower is better) Translates to: VFIDGELCWKSGKRERVESSSSS*AASIKR Trigger: CCTTTTAATGCTGGCTGCCAAAGAGGATGAGGAGGA...TTCTACTCTCTCTCTTTTGCCAGATTTCCAGCAGAGTTCTCCATCAATAAAGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041973.7 ENSMUST00000212912.2 |
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| CDS-3UTR CAA 90 bp | AGGATGTCTTTATTGATGGAGAACTCTGCTGGAAATCTGGCAAAAGAGAGAGAGCTGGCAATTCTCGTCTaGCTTCAAGAGCAAAGAATA | + |
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Preference number: 5 (lower is better) Translates to: RMSLLMENSAGNLAKERELAILV*LQEQRI Trigger: TATTCTTTGCTCTTGAAGCAAGACGAGAATTGCCAG...CTCTCTCTCTTTTGCCAGATTTCCAGCAGAGTTCTCCATCAATAAAGACATCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041973.7 |
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| CDS-3UTR CAA 90 bp | AGGATGTCTTTATTGATGGAGAACTCTGCTGGAAATCTGGCAAAAGAGAGAGAGCTTCCTGCTTTTAAATaGTCTCCTCTGAAGACACAG | + |
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Preference number: 5 (lower is better) Translates to: RMSLLMENSAGNLAKERELPAFK*SPLKTQ Trigger: CTGTGTCTTCAGAGGAGACAATTTAAAAGCAGGAAG...CTCTCTCTCTTTTGCCAGATTTCCAGCAGAGTTCTCCATCAATAAAGACATCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041973.7 ENSMUST00000212912.2 |
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| CDS GCA 72 bp | CCATCCAGGGTCCATCGACTCCCTCTTCGCTTTCTCTaGCAGTTCCCTTTGCCTCTCCTCCTCATCCTCTTT | + |
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Preference number: 6 (lower is better) Translates to: PSRVHRLPLRFL*QFPLPLLLILF Trigger: AAAGAGGATGAGGAGGAGAGGCAAAGGGAACTGGCAGAGAAAGCGAAGAGGGAGTCGATGGACCCTGGATGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041973.7 ENSMUST00000212912.2 |
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| CDS CAA 90 bp | TTCGCTTTCTCTGCCAGTTCCCTTTGCCTCTCCTCCTCATCCTCTTaGGCAGCCAGCATTAAAAGGAGTTTCGGGTCCTGCTTCTTGCCT | + |
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Preference number: 6 (lower is better) Translates to: FAFSASSLCLSSSSS*AASIKRSFGSCFLP Trigger: AGGCAAGAAGCAGGACCCGAAACTCCTTTTAATGCTGGCTGCCAAAGAGGATGAGGAGGAGAGGCAAAGGGAACTGGCAGAGAAAGCGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041973.7 ENSMUST00000212912.2 |
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| CDS GCA 72 bp | AGCAATGAGGAGGATCATAATCAGAGACTTGCACTCTaGATGTCCCTGCGCCCAGAAGTCTTTATTGCTGTC | + |
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Preference number: 6 (lower is better) Translates to: SNEEDHNQRLAL*MSLRPEVFIAV Trigger: GACAGCAATAAAGACTTCTGGGCGCAGGGACATGCAGAGTGCAAGTCTCTGATTATGATCCTCCTCATTGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041973.7 |
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| CDS CAA 72 bp | ACCATTGCAGCAATGAGGAGGATCATAATCAGAGACTaGCACTCTGCATGTCCCTGCGCCCAGAAGTCTTTA | + |
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Preference number: 6 (lower is better) Translates to: TIAAMRRIIIRD*HSACPCAQKSL Trigger: TAAAGACTTCTGGGCGCAGGGACATGCAGAGTGCAAGTCTCTGATTATGATCCTCCTCATTGCTGCAATGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041973.7 |
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| CDS CAA 90 bp | TGGAAACAGACCATTGCAGCAATGAGGAGGATCATAATCAGAGACTaGCACTCTGCATGTCCCTGCGCCCAGAAGTCTTTATTGCTGTCT | + |
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Preference number: 6 (lower is better) Translates to: WKQTIAAMRRIIIRD*HSACPCAQKSLLLS Trigger: AGACAGCAATAAAGACTTCTGGGCGCAGGGACATGCAGAGTGCAAGTCTCTGATTATGATCCTCCTCATTGCTGCAATGGTCTGTTTCCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041973.7 |
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| CDS TCA 72 bp | CTCGTCTTGCTTCAAGAGCAAAGAATATACCACCTATaGGGAATGTGGAACAGGCCAGGTCGTTCATCAGAT | + |
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Preference number: 6 (lower is better) Translates to: LVLLQEQRIYHL*GMWNRPGRSSD Trigger: ATCTGATGAACGACCTGGCCTGTTCCACATTCCTCATAGGTGGTATATTCTTTGCTCTTGAAGCAAGACGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041973.7 |
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| CDS CAA 72 bp | AAGCAGCAGGATTACAATTGGATGAGTGGCCACTCTTaGGAAACAGACCATTGCAGCAATGAGGAGGATCAT | + |
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Preference number: 6 (lower is better) Translates to: KQQDYNWMSGHS*ETDHCSNEEDH Trigger: ATGATCCTCCTCATTGCTGCAATGGTCTGTTTCCAAAGAGTGGCCACTCATCCAATTGTAATCCTGCTGCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041973.7 |
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| CDS CAA 72 bp | GCAGCCAGCATTAAAAGGAGTTTCGGGTCCTGCTTCTaGCCTTTCCTGTCTGGGGTAAGTAGAATAAACTTT | + |
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Preference number: 6 (lower is better) Translates to: AASIKRSFGSCF*PFLSGVSRINF Trigger: AAAGTTTATTCTACTTACCCCAGACAGGAAAGGCAAGAAGCAGGACCCGAAACTCCTTTTAATGCTGGCTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041973.7 ENSMUST00000212912.2 |
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| CDS TCA 72 bp | AACTTTCGAAGCTTCCTGCTTTTAAATTGTCTCCTCTaGAGACACAGGTCAATGATACTTATAAATGCCGTA | + |
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Preference number: 6 (lower is better) Translates to: NFRSFLLLNCLL*RHRSMILINAV Trigger: TACGGCATTTATAAGTATCATTGACCTGTGTCTTCAGAGGAGACAATTTAAAAGCAGGAAGCTTCGAAAGTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041973.7 ENSMUST00000212912.2 |
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