RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CMTM2A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000074127

Ensembl transcript IDs: ENSMUST00000034344.10, ENSMUST00000212487.2, ENSMUST00000212492.2

Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp TCATGGTGTTTATTTCTCAGTTGCACAGCTTGGCATGGGTCCTCCAGGTACCCCGGAGATTCAAGTAGTTaGCTAAGGTGTCTTCCTAAG +
Preference number: 2 (lower is better)
Translates to: SWCLFLSCTAWHGSSRYPGDSSS*LRCLPK
Trigger: CTTAGGAAGACACCTTAGTCAACTACTTGAATCTCC...GGGGTACCTGGAGGACCCATGCCAAGCTGTGCAACTGAGAAATAAACACCATGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034344.10
3UTR-3UTR TCA 90 bp CAGGTACCCCGGCCGGCCACCAGATTATATTTCATAACATTTATAGTTAAGAGAGCATCCCCCAAGCAGTaGGCAGAGATCACCTTAAAG +
Preference number: 2 (lower is better)
Translates to: QVPRPATRLYFITFIVKRASPKQ*AEITLK
Trigger: CTTTAAGGTGATCTCTGCTCACTGCTTGGGGGATGC...TCTCTTAACTATAAATGTTATGAAATATAATCTGGTGGCCGGCCGGGGTACCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034344.10
3UTR-3UTR TCA 90 bp GCCACCAGATTATATTTCATAACATTTATAGTTAAGAGAAAGGTCAGCCATACCGGTATCCTGAATCCCTaGGAGCATCCCCCAAGCAGT +
Preference number: 2 (lower is better)
Translates to: ATRLYFITFIVKRKVSHTGILNP*EHPPSS
Trigger: ACTGCTTGGGGGATGCTCTCAGGGATTCAGGATACC...GGTATGGCTGACCTTTCTCTTAACTATAAATGTTATGAAATATAATCTGGTGGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034344.10
3UTR CCA 72 bp TCTGTTTCATGGTGTTTATTTCTCAGTTGCACAGCTTaGCATGGGTCCTCCAGGTACCCCGGCCGGCCACCA +
Preference number: 3 (lower is better)
Translates to: SVSWCLFLSCTA*HGSSRYPGRPP
Trigger: TGGTGGCCGGCCGGGGTACCTGGAGGACCCATGCCAAGCTGTGCAACTGAGAAATAAACACCATGAAACAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034344.10
3UTR CCA 72 bp TTCATGGTGTTTATTTCTCAGTTGCACAGCTTGGCATaGGTCCTCCAGGTACCCCGGCCGGCCACCAGATTA +
Preference number: 3 (lower is better)
Translates to: FMVFISQLHSLA*VLQVPRPATRL
Trigger: TAATCTGGTGGCCGGCCGGGGTACCTGGAGGACCCATGCCAAGCTGTGCAACTGAGAAATAAACACCATGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034344.10
3UTR TCA 72 bp AAAGAGAACTTATGTTCTGTGGGTATCCTGAATCCCTaGGAGCATCCCCCAAGCAGTGAGCAGAGATCACCT +
Preference number: 3 (lower is better)
Translates to: KENLCSVGILNP*EHPPSSEQRSP
Trigger: AGGTGATCTCTGCTCACTGCTTGGGGGATGCTCTCAGGGATTCAGGATACCCACAGAACATAAGTTCTCTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034344.10
3UTR-3UTR CAA 90 bp CTCCAGGTACCCCGGCCGGCCACCAGATTATATTTCATAACATTTATAGTTAAGATATGGTTCAGGGGCTaGTCCCACGATGAAAAAGAT +
Preference number: 3 (lower is better)
Translates to: LQVPRPATRLYFITFIVKIWFRG*SHDEKD
Trigger: ATCTTTTTCATCGTGGGACAAGCCCCTGAACCATAT...CTTAACTATAAATGTTATGAAATATAATCTGGTGGCCGGCCGGGGTACCTGGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000034344.10
3UTR CCA 72 bp AATAATGGTGACTTCAAACCCAGTAATGACGATATATaGTTCAGGGGCTTGTCCCACGATGAAAAAGATCAT +
Preference number: 3 (lower is better)
Translates to: NNGDFKPSNDDI*FRGLSHDEKDH
Trigger: ATGATCTTTTTCATCGTGGGACAAGCCCCTGAACCATATATCGTCATTACTGGGTTTGAAGTCACCATTATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034344.10
CDS-3UTR TCA 90 bp CAGTTGCACAGCTTGGCATGGGTCCTCCAGGTACCCCGGCCGGCCACCAGATTACCAAAGACAGAAGCTTaGACACGGCGTGTCCTGACA +
Preference number: 4 (lower is better)
Translates to: QLHSLAWVLQVPRPATRLPKTEA*TRRVLT
Trigger: TGTCAGGACACGCCGTGTTCAAGCTTCTGTCTTTGG...TAATCTGGTGGCCGGCCGGGGTACCTGGAGGACCCATGCCAAGCTGTGCAACTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034344.10
CDS-3UTR TCA 90 bp CACAGCTTGGCATGGGTCCTCCAGGTACCCCGGCCGGCCACCAGATTATATTTCGAACACGGCGTGTCCTaGCAGCCAGAACTCTTTATT +
Preference number: 4 (lower is better)
Translates to: HSLAWVLQVPRPATRLYFEHGVS*QPELFI
Trigger: AATAAAGAGTTCTGGCTGTCAGGACACGCCGTGTTC...GAAATATAATCTGGTGGCCGGCCGGGGTACCTGGAGGACCCATGCCAAGCTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034344.10
CDS-3UTR TCA 90 bp GCCACCAGATTATATTTCATAACATTTATAGTTAAGAGAAAGGTCAGCCATACCGTGTCCTCTCTGGGCTaGCCTCCTCTGGGCCGAAAT +
Preference number: 4 (lower is better)
Translates to: ATRLYFITFIVKRKVSHTVSSLG*PPLGRN
Trigger: ATTTCGGCCCAGAGGAGGTCAGCCCAGAGAGGACAC...GGTATGGCTGACCTTTCTCTTAACTATAAATGTTATGAAATATAATCTGGTGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034344.10
CDS-3UTR TCA 90 bp ACGATATATGGTTCAGGGGCTTGTCCCACGATGAAAAAGATCATAGATGTCACAGAAGTAACATGTCGATaGAAGAACAGATCGCAGCAG +
Preference number: 4 (lower is better)
Translates to: TIYGSGACPTMKKIIDVTEVTCR*KNRSQQ
Trigger: CTGCTGCGATCTGTTCTTTCATCGACATGTTACTTC...TGTGACATCTATGATCTTTTTCATCGTGGGACAAGCCCCTGAACCATATATCGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034344.10
CDS-3UTR TCA 90 bp CAGGTACCCCGGCCGGCCACCAGATTATATTTCATAACATTTATAGTTAAGAGACTGAAGTGTTGGAATTaGAGTAACATGTCGATGAAA +
Preference number: 4 (lower is better)
Translates to: QVPRPATRLYFITFIVKRLKCWN*SNMSMK
Trigger: TTTCATCGACATGTTACTTCAATTCCAACACTTCAG...TCTCTTAACTATAAATGTTATGAAATATAATCTGGTGGCCGGCCGGGGTACCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034344.10
CDS-3UTR CCA 90 bp GCCACCAGATTATATTTCATAACATTTATAGTTAAGAGAAAGGTCAGCCATACCGATCAGGACCGGATGTaGGAGCATTGTTTCAAAGTA +
Preference number: 4 (lower is better)
Translates to: ATRLYFITFIVKRKVSHTDQDRM*EHCFKV
Trigger: TACTTTGAAACAATGCTCCCACATCCGGTCCTGATC...GGTATGGCTGACCTTTCTCTTAACTATAAATGTTATGAAATATAATCTGGTGGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034344.10
3UTR CAA 72 bp CTTACAAGCAAAGGCCAAAAGAAAGATTTCATTATCTaGTCACGTCTGCACATATACAAGACTACGAAACAG +
Preference number: 4 (lower is better)
Translates to: LTSKGQKKDFII*SRLHIYKTTKQ
Trigger: CTGTTTCGTAGTCTTGTATATGTGCAGACGTGACAAGATAATGAAATCTTTCTTTTGGCCTTTGCTTGTAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034344.10
CDS-3UTR GCA 90 bp GCCACCAGATTATATTTCATAACATTTATAGTTAAGAGAAAGGTCAGCCATACCGCCAGAACTCTTTATTaGTCTCTTTCAATTCCAATA +
Preference number: 4 (lower is better)
Translates to: ATRLYFITFIVKRKVSHTARTLY*SLSIPI
Trigger: TATTGGAATTGAAAGAGAGCAATAAAGAGTTCTGGC...GGTATGGCTGACCTTTCTCTTAACTATAAATGTTATGAAATATAATCTGGTGGC
34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034344.10
CDS TCA 90 bp CATTCTCTTCTCTTTCCCTCCTGTACTGGTGGTCTTCCTGAGGACTaGTGGATCCCTGGACACCAACAGCGCCATAGGCCAGAAGACGAA +
Preference number: 5 (lower is better)
Translates to: HSLLFPSCTGGLPED*WIPGHQQRHRPEDE
Trigger: TTCGTCTTCTGGCCTATGGCGCTGTTGGTGTCCAGGGATCCATCAGTCCTCAGGAAGACCACCAGTACAGGAGGGAAAGAGAAGAGAATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212487.2
CDS TCA 90 bp CAAAGTAGTCTAGTGCAGAGATCATGCAGCCCAAAGACAGAAGCTTaGACACGGCGTGTCCTGACAGCCAGAACTCTTTATTGCTCTCTT +
Preference number: 5 (lower is better)
Translates to: QSSLVQRSCSPKTEA*TRRVLTARTLYCSL
Trigger: AAGAGAGCAATAAAGAGTTCTGGCTGTCAGGACACGCCGTGTTCAAGCTTCTGTCTTTGGGCTGCATGATCTCTGCACTAGACTACTTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034344.10
ENSMUST00000212487.2
ENSMUST00000212492.2
CDS-3UTR CAA 90 bp CCCCGGCCGGCCACCAGATTATATTTCATAACATTTATAGTTAAGAGAAAGGTCCAGGAGAACAGGCTGTaGAAGATATCCGCCATAGGC +
Preference number: 5 (lower is better)
Translates to: PRPATRLYFITFIVKRKVQENRL*KISAIG
Trigger: GCCTATGGCGGATATCTTCAACAGCCTGTTCTCCTG...GACCTTTCTCTTAACTATAAATGTTATGAAATATAATCTGGTGGCCGGCCGGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034344.10
CDS GCA 90 bp TTTTCACTTTGTCTTCTGTGCGTTCTGCTTTCAAAGGTTCTCATTTaGATTCTCTTCTCTTTCCCTCCTGTACTGGTGGTCTTCCTGAGG +
Preference number: 5 (lower is better)
Translates to: FSLCLLCVLLSKVLI*ILFSFPPVLVVFLR
Trigger: CCTCAGGAAGACCACCAGTACAGGAGGGAAAGAGAAGAGAATGCAAATGAGAACCTTTGAAAGCAGAACGCACAGAAGACAAAGTGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212487.2
CDS TCA 72 bp CTCTTTCCCTCCTGTACTGGTGGTCTTCCTGAGGACTaGTGGATCCCTGGACACCAACAGCGCCATAGGCCA +
Preference number: 6 (lower is better)
Translates to: LFPSCTGGLPED*WIPGHQQRHRP
Trigger: TGGCCTATGGCGCTGTTGGTGTCCAGGGATCCATCAGTCCTCAGGAAGACCACCAGTACAGGAGGGAAAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212487.2
CDS TCA 72 bp TTCTCTTCTCTTTCCCTCCTGTACTGGTGGTCTTCCTaGGGACTGATGGATCCCTGGACACCAACAGCGCCA +
Preference number: 6 (lower is better)
Translates to: FSSLSLLYWWSS*GLMDPWTPTAP
Trigger: TGGCGCTGTTGGTGTCCAGGGATCCATCAGTCCTCAGGAAGACCACCAGTACAGGAGGGAAAGAGAAGAGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212487.2
CDS CAA 72 bp ATGCCACCTCCAAGGAACACACAGGAGAACAGGCTGTaGAAGATATCCGCCATAGGCCAGAAGACGAAGGGA +
Preference number: 6 (lower is better)
Translates to: MPPPRNTQENRL*KISAIGQKTKG
Trigger: TCCCTTCGTCTTCTGGCCTATGGCGGATATCTTCAACAGCCTGTTCTCCTGTGTGTTCCTTGGAGGTGGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034344.10
CDS TCA 72 bp CTAGTGCAGAGATCATGCAGCCCAAAGACAGAAGCTTaGACACGGCGTGTCCTGACAGCCAGAACTCTTTAT +
Preference number: 6 (lower is better)
Translates to: LVQRSCSPKTEA*TRRVLTARTLY
Trigger: ATAAAGAGTTCTGGCTGTCAGGACACGCCGTGTTCAAGCTTCTGTCTTTGGGCTGCATGATCTCTGCACTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034344.10
ENSMUST00000212487.2
ENSMUST00000212492.2
CDS CAA 72 bp TCTAGTGCAGAGATCATGCAGCCCAAAGACAGAAGCTaGAACACGGCGTGTCCTGACAGCCAGAACTCTTTA +
Preference number: 6 (lower is better)
Translates to: SSAEIMQPKDRS*NTACPDSQNSL
Trigger: TAAAGAGTTCTGGCTGTCAGGACACGCCGTGTTCAAGCTTCTGTCTTTGGGCTGCATGATCTCTGCACTAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034344.10
ENSMUST00000212487.2
ENSMUST00000212492.2
CDS TCA 72 bp GCAGCCCAAAGACAGAAGCTTGAACACGGCGTGTCCTaGCAGCCAGAACTCTTTATTGCTCTCTTTCAATTC +
Preference number: 6 (lower is better)
Translates to: AAQRQKLEHGVS*QPELFIALFQF
Trigger: GAATTGAAAGAGAGCAATAAAGAGTTCTGGCTGTCAGGACACGCCGTGTTCAAGCTTCTGTCTTTGGGCTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034344.10
ENSMUST00000212487.2
ENSMUST00000212492.2
CDS CAA 90 bp CTCCTCAGCTCCTTCACTGAGCACACGGGCTCCATCTTTTTCACTTaGTCTTCTGTGCGTTCTGCTTTCAAAGGTTCTCATTTGCATTCT +
Preference number: 6 (lower is better)
Translates to: LLSSFTEHTGSIFFT*SSVRSAFKGSHLHS
Trigger: AGAATGCAAATGAGAACCTTTGAAAGCAGAACGCACAGAAGACAAAGTGAAAAAGATGGAGCCCGTGTGCTCAGTGAAGGAGCTGAGGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000212487.2
CDS CAA 90 bp AATGGTGACTTCAAACCCAGTAATGACGATATATGGTTCAGGGGCTaGTCCCACGATGAAAAAGATCATAGATGTCACAGTTACCACCGC +
Preference number: 6 (lower is better)
Translates to: NGDFKPSNDDIWFRG*SHDEKDHRCHSYHR
Trigger: GCGGTGGTAACTGTGACATCTATGATCTTTTTCATCGTGGGACAAGCCCCTGAACCATATATCGTCATTACTGGGTTTGAAGTCACCATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000212492.2
CDS CAA 90 bp TTTTTCACTTTGTCTTCTGTGCGTTCTGCTTTCAAAGGTTCTCATTaGCATTCTCTTCTCTTTCCCTCCTGTACTGGTGGTCTTCCTGAG +
Preference number: 6 (lower is better)
Translates to: FFTLSSVRSAFKGSH*HSLLFPSCTGGLPE
Trigger: CTCAGGAAGACCACCAGTACAGGAGGGAAAGAGAAGAGAATGCAAATGAGAACCTTTGAAAGCAGAACGCACAGAAGACAAAGTGAAAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000212487.2
CDS GCA 72 bp GGGCTCCATCTTTTTCACTTTGTCTTCTGTGCGTTCTaGTTTCAAAGGTTCTCATTTGCATTCTCTTCTCTT +
Preference number: 6 (lower is better)
Translates to: GLHLFHFVFCAF*FQRFSFAFSSL
Trigger: AAGAGAAGAGAATGCAAATGAGAACCTTTGAAAGCAGAACGCACAGAAGACAAAGTGAAAAAGATGGAGCCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000212487.2
CDS CAA 72 bp TTCAAACCCAGTAATGACGATATATGGTTCAGGGGCTaGTCCCACGATGAAAAAGATCATAGATGTCACAGT +
Preference number: 6 (lower is better)
Translates to: FKPSNDDIWFRG*SHDEKDHRCHS
Trigger: ACTGTGACATCTATGATCTTTTTCATCGTGGGACAAGCCCCTGAACCATATATCGTCATTACTGGGTTTGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000212492.2