Pregenerated sensors for CMSS1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022748Ensembl transcript IDs: ENSMUST00000114371.5, ENSMUST00000232413.2
Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GCCCAAAGACAGGGTCACAGTTGTCAAAGAATCCCCTCGAGGCAGCCTCAGGGAGTGCTTGCAATATGTTaGCAACTGGACTCTTCATCA | + |
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Preference number: 2 (lower is better) Translates to: AQRQGHSCQRIPSRQPQGVLAIC*QLDSSS Trigger: TGATGAAGAGTCCAGTTGCCAACATATTGCAAGCAC...TCCCTGAGGCTGCCTCGAGGGGATTCTTTGACAACTGTGACCCTGTCTTTGGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114371.5 |
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| 3UTR-3UTR TCA 90 bp | GCCCAAAGACAGGGTCACAGTTGTCAAAGAATCCCCTCGAGGCAGCCTCAGGGAGTGATGGACTTAACATaGTTACGGTGGAGTAAGTTA | + |
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Preference number: 2 (lower is better) Translates to: AQRQGHSCQRIPSRQPQGVMDLT*LRWSKL Trigger: TAACTTACTCCACCGTAATCATGTTAAGTCCATCAC...TCCCTGAGGCTGCCTCGAGGGGATTCTTTGACAACTGTGACCCTGTCTTTGGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114371.5 |
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| 3UTR-3UTR GCA 90 bp | TCAAAGAATCCCCTCGAGGCAGCCTCAGGGATCCACTGGGTGATGGACTTAACAAAGTTACTGAGTGCTTaGAATATGTTGGCAACTGGA | + |
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Preference number: 2 (lower is better) Translates to: SKNPLEAASGIHWVMDLTKLLSA*NMLATG Trigger: TCCAGTTGCCAACATATTGCAAGCACTCAGTAACTT...TGTTAAGTCCATCACCCAGTGGATCCCTGAGGCTGCCTCGAGGGGATTCTTTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114371.5 |
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| 3UTR GCA 72 bp | GTCCTAAGTCAGCTGGCCCACCCTGCCACCTTTGCATaGCCGAACAGATCAAGCCTGAGTTGTGAGCCCCGC | + |
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Preference number: 3 (lower is better) Translates to: VLSQLAHPATFA*PNRSSLSCEPR Trigger: GCGGGGCTCACAACTCAGGCTTGATCTGTTCGGGCATGCAAAGGTGGCAGGGTGGGCCAGCTGACTTAGGAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000232413.2 |
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| 3UTR-3UTR CAA 90 bp | TTGTCAAAGAATCCCCTCGAGGCAGCCTCAGGGATCCACTGGGTGATGGACTTAAGTGCTTGCAATATGTaGGCAACTGGACTCTTCATC | + |
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Preference number: 3 (lower is better) Translates to: LSKNPLEAASGIHWVMDLSACNM*ATGLFI Trigger: GATGAAGAGTCCAGTTGCCAACATATTGCAAGCACT...TAAGTCCATCACCCAGTGGATCCCTGAGGCTGCCTCGAGGGGATTCTTTGACAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114371.5 |
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| 3UTR TCA 72 bp | AACAAGACAACACACGCAGGCAGAGCTTTTATTATCTaGGGGTATGAGCCCAAAGACAGGGTCACAGTTGTC | + |
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Preference number: 3 (lower is better) Translates to: NKTTHAGRAFII*GYEPKDRVTVV Trigger: GACAACTGTGACCCTGTCTTTGGGCTCATACCCTCAGATAATAAAAGCTCTGCCTGCGTGTGTTGTCTTGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114371.5 |
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| CDS-3UTR GCA 90 bp | GCCCAAAGACAGGGTCACAGTTGTCAAAGAATCCCCTCGAGGCAGCCTCAGGGACTGATTGCTCTGGGCTaGTGGCGGCTGCCGGCTGGT | + |
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Preference number: 4 (lower is better) Translates to: AQRQGHSCQRIPSRQPQGLIALG*WRLPAG Trigger: ACCAGCCGGCAGCCGCCAGCAGCCCAGAGCAATCAG...TCCCTGAGGCTGCCTCGAGGGGATTCTTTGACAACTGTGACCCTGTCTTTGGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114371.5 |
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| CDS-3UTR GCA 90 bp | AAGTCAGCTGGCCCACCCTGCCACCTTTGCATGCCCGAACAGATCAAGCCTGAGAGAGTAGATCTGGGCTaGTGGCGGCTGCCGGCTGGT | + |
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Preference number: 4 (lower is better) Translates to: KSAGPPCHLCMPEQIKPERVDLG*WRLPAG Trigger: ACCAGCCGGCAGCCGCCAGCAGCCCAGATCTACTCT...CTCAGGCTTGATCTGTTCGGGCATGCAAAGGTGGCAGGGTGGGCCAGCTGACTT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000232413.2 |
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| CDS-3UTR CCA 90 bp | AAGACAGGGTCACAGTTGTCAAAGAATCCCCTCGAGGCAGCCTCAGGGATCCACCTGGCGGCTGCCGGCTaGTTCTCCCACCACTCGTCT | + |
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Preference number: 4 (lower is better) Translates to: KTGSQLSKNPLEAASGIHLAAAG*FSHHSS Trigger: AGACGAGTGGTGGGAGAACCAGCCGGCAGCCGCCAG...GTGGATCCCTGAGGCTGCCTCGAGGGGATTCTTTGACAACTGTGACCCTGTCTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114371.5 |
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| CDS-3UTR TCA 90 bp | TTCAGGTCTGTCCTAAGTCAGCTGGCCCACCCTGCCACCTTTGCATGCCCGAACGGAAGGGAGAAGAGCTaGAGAGTAGATCTGGGCTGC | + |
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Preference number: 4 (lower is better) Translates to: FRSVLSQLAHPATFACPNGREKS*RVDLGC Trigger: GCAGCCCAGATCTACTCTTCAGCTCTTCTCCCTTCC...GTTCGGGCATGCAAAGGTGGCAGGGTGGGCCAGCTGACTTAGGACAGACCTGAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000232413.2 |
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| CDS-3UTR TCA 90 bp | TCCCCTCGAGGCAGCCTCAGGGATCCACTGGGTGATGGACTTAACATGATTACGTCTCTGATCAGCTTCTaGAGGTCCTCAGGGGTCCCT | + |
|
Preference number: 4 (lower is better) Translates to: SPRGSLRDPLGDGLNMITSLISF*RSSGVP Trigger: AGGGACCCCTGAGGACCTTCAGAAGCTGATCAGAGA...CGTAATCATGTTAAGTCCATCACCCAGTGGATCCCTGAGGCTGCCTCGAGGGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114371.5 |
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| CDS-3UTR GCA 90 bp | TCAAAGAATCCCCTCGAGGCAGCCTCAGGGATCCACTGGGTGATGGACTTAACACTCGCACAGCGGAGCTaGAGAGGATCAGCATCAGGA | + |
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Preference number: 4 (lower is better) Translates to: SKNPLEAASGIHWVMDLTLAQRS*RGSASG Trigger: TCCTGATGCTGATCCTCTGCAGCTCCGCTGTGCGAG...TGTTAAGTCCATCACCCAGTGGATCCCTGAGGCTGCCTCGAGGGGATTCTTTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114371.5 |
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| CDS-3UTR CCA 90 bp | AAACAAAAACAAAAGTCTGTGCCCTTCAGGTCTGTCCTAAGTCAGCTGGCCCACCTGGCGGCTGCCGGCTaGTTCTCCCACCACTCGTCT | + |
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Preference number: 4 (lower is better) Translates to: KQKQKSVPFRSVLSQLAHLAAAG*FSHHSS Trigger: AGACGAGTGGTGGGAGAACCAGCCGGCAGCCGCCAG...GTGGGCCAGCTGACTTAGGACAGACCTGAAGGGCACAGACTTTTGTTTTTGTTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000232413.2 |
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| CDS-3UTR CCA 90 bp | GCCCAAAGACAGGGTCACAGTTGTCAAAGAATCCCCTCGAGGCAGCCTCAGGGATCTTCTTCCACTTCCTaGTCTTCCGAGAGTCCTCTG | + |
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Preference number: 4 (lower is better) Translates to: AQRQGHSCQRIPSRQPQGSSSTS*SSESPL Trigger: CAGAGGACTCTCGGAAGACCAGGAAGTGGAAGAAGA...TCCCTGAGGCTGCCTCGAGGGGATTCTTTGACAACTGTGACCCTGTCTTTGGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114371.5 |
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| CDS-3UTR TCA 90 bp | TTATCTGAGGGTATGAGCCCAAAGACAGGGTCACAGTTGTCAAAGAATCCCCTCTCCTTCCTCACCACCTaGTTGCTCTGGGCTGCTGGC | + |
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Preference number: 4 (lower is better) Translates to: LSEGMSPKTGSQLSKNPLSFLTT*LLWAAG Trigger: GCCAGCAGCCCAGAGCAATCAGGTGGTGAGGAAGGA...GAGGGGATTCTTTGACAACTGTGACCCTGTCTTTGGGCTCATACCCTCAGATAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114371.5 |
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| CDS-3UTR GCA 90 bp | GCCCAAAGACAGGGTCACAGTTGTCAAAGAATCCCCTCGAGGCAGCCTCAGGGACTTCCGAGAGTCCTCTaGTTTGGGTTCCTTTGTTTG | + |
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Preference number: 4 (lower is better) Translates to: AQRQGHSCQRIPSRQPQGLPRVL*FGFLCL Trigger: CAAACAAAGGAACCCAAAGCAGAGGACTCTCGGAAG...TCCCTGAGGCTGCCTCGAGGGGATTCTTTGACAACTGTGACCCTGTCTTTGGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114371.5 |
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| CDS-3UTR CCA 90 bp | CAAAGACAGGGTCACAGTTGTCAAAGAATCCCCTCGAGGCAGCCTCAGGGATCCCAGGGGTCCCTGGTTTaGGCTCTGATTTTGCAAGAA | + |
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Preference number: 4 (lower is better) Translates to: QRQGHSCQRIPSRQPQGSQGSLV*ALILQE Trigger: TTCTTGCAAAATCAGAGCCCAAACCAGGGACCCCTG...GGATCCCTGAGGCTGCCTCGAGGGGATTCTTTGACAACTGTGACCCTGTCTTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000114371.5 |
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| 3UTR CAA 72 bp | TTATCTGAGGGTATGAGCCCAAAGACAGGGTCACAGTaGTCAAAGAATCCCCTCGAGGCAGCCTCAGGGATC | + |
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Preference number: 4 (lower is better) Translates to: LSEGMSPKTGSQ*SKNPLEAASGI Trigger: GATCCCTGAGGCTGCCTCGAGGGGATTCTTTGACAACTGTGACCCTGTCTTTGGGCTCATACCCTCAGATAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114371.5 |
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| CDS-3UTR GCA 90 bp | CTTCAGGTCTGTCCTAAGTCAGCTGGCCCACCCTGCCACCTTTGCATGCCCGAATTTGGTACGCTGCACTaGACTGGAAATTGTACATTC | + |
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Preference number: 4 (lower is better) Translates to: LQVCPKSAGPPCHLCMPEFGTLH*TGNCTF Trigger: GAATGTACAATTTCCAGTGCAGTGCAGCGTACCAAA...TTCGGGCATGCAAAGGTGGCAGGGTGGGCCAGCTGACTTAGGACAGACCTGAAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000232413.2 |
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| CDS-3UTR GCA 90 bp | TCACAGTTGTCAAAGAATCCCCTCGAGGCAGCCTCAGGGATCCACTGGGTGATGCAGGAGTCTGGTAGGTaGAGTTCTTCTAATTCTATC | + |
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Preference number: 4 (lower is better) Translates to: SQLSKNPLEAASGIHWVMQESGR*SSSNSI Trigger: GATAGAATTAGAAGAACTGCACCTACCAGACTCCTG...CATCACCCAGTGGATCCCTGAGGCTGCCTCGAGGGGATTCTTTGACAACTGTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114371.5 |
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| CDS-3UTR CCA 90 bp | AAGACAGGGTCACAGTTGTCAAAGAATCCCCTCGAGGCAGCCTCAGGGATCCACAACTTTACCTGTTCCTaGACCTTTATATGTTTTGCA | + |
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Preference number: 4 (lower is better) Translates to: KTGSQLSKNPLEAASGIHNFTCS*TFICFA Trigger: TGCAAAACATATAAAGGTCCAGGAACAGGTAAAGTT...GTGGATCCCTGAGGCTGCCTCGAGGGGATTCTTTGACAACTGTGACCCTGTCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114371.5 |
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| CDS-3UTR CCA 90 bp | TTACGGTGGAGTAAGTTACTGAGTGCTTGCAATATGTTGGCAACTGGACTCTTCTCAGGAAACACTCAGTaGGCTGTTGGGTTTTCTCAG | + |
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Preference number: 4 (lower is better) Translates to: LRWSKLLSACNMLATGLFSGNTQ*AVGFSQ Trigger: CTGAGAAAACCCAACAGCCCACTGAGTGTTTCCTGA...GAAGAGTCCAGTTGCCAACATATTGCAAGCACTCAGTAACTTACTCCACCGTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114371.5 |
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| CDS-3UTR TCA 90 bp | CTTTTATTATCTGAGGGTATGAGCCCAAAGACAGGGTCACAGTTGTCAAAGAATCCGACTTGCACAGGCTaGACACTCCCATATCTAGAA | + |
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Preference number: 4 (lower is better) Translates to: LLLSEGMSPKTGSQLSKNPTCTG*TLPYLE Trigger: TTCTAGATATGGGAGTGTTCAGCCTGTGCAAGTCGG...ATTCTTTGACAACTGTGACCCTGTCTTTGGGCTCATACCCTCAGATAATAAAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114371.5 |
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| CDS-3UTR CCA 90 bp | AAACAAAAACAAAAGTCTGTGCCCTTCAGGTCTGTCCTAAGTCAGCTGGCCCACTACGCTGCACTGCACTaGAAATTGTACATTCACTTT | + |
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Preference number: 4 (lower is better) Translates to: KQKQKSVPFRSVLSQLAHYAALH*KLYIHF Trigger: AAAGTGAATGTACAATTTCCAGTGCAGTGCAGCGTA...GTGGGCCAGCTGACTTAGGACAGACCTGAAGGGCACAGACTTTTGTTTTTGTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000232413.2 |
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| CDS-3UTR CCA 90 bp | TTACGGTGGAGTAAGTTACTGAGTGCTTGCAATATGTTGGCAACTGGACTCTTCTTTAAGGGGTTCAAATaGAGGCCATCTTGTTTGACA | + |
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Preference number: 4 (lower is better) Translates to: LRWSKLLSACNMLATGLFFKGFK*RPSCLT Trigger: TGTCAAACAAGATGGCCTCCATTTGAACCCCTTAAA...GAAGAGTCCAGTTGCCAACATATTGCAAGCACTCAGTAACTTACTCCACCGTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114371.5 |
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| CDS-3UTR CAA 90 bp | TTCAGGTCTGTCCTAAGTCAGCTGGCCCACCCTGCCACCTTTGCATGCCCGAACAGTGTCAGACAGGCTTaGGGGAGGTCAGCTAGTGAC | + |
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Preference number: 5 (lower is better) Translates to: FRSVLSQLAHPATFACPNSVRQA*GRSASD Trigger: GTCACTAGCTGACCTCCCCAAAGCCTGTCTGACACT...GTTCGGGCATGCAAAGGTGGCAGGGTGGGCCAGCTGACTTAGGACAGACCTGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000232413.2 |
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| CDS-3UTR CAA 90 bp | TCACAGTTGTCAAAGAATCCCCTCGAGGCAGCCTCAGGGATCCACTGGGTGATGACACTCAGTGGGCTGTaGGGTTTTCTCAGGAACCGG | + |
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Preference number: 5 (lower is better) Translates to: SQLSKNPLEAASGIHWVMTLSGL*GFLRNR Trigger: CCGGTTCCTGAGAAAACCCAACAGCCCACTGAGTGT...CATCACCCAGTGGATCCCTGAGGCTGCCTCGAGGGGATTCTTTGACAACTGTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114371.5 |
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| CDS-3UTR CAA 90 bp | GTCAAAGAATCCCCTCGAGGCAGCCTCAGGGATCCACTGGGTGATGGACTTAACTTCAAGGAGTCCGACTaGCACAGGCTGAACACTCCC | + |
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Preference number: 5 (lower is better) Translates to: VKESPRGSLRDPLGDGLNFKESD*HRLNTP Trigger: GGGAGTGTTCAGCCTGTGCAAGTCGGACTCCTTGAA...GTTAAGTCCATCACCCAGTGGATCCCTGAGGCTGCCTCGAGGGGATTCTTTGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114371.5 |
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| CDS TCA 90 bp | CACTGGAAATTGTACATTCACTTTCTTCTGGGAAGGGAGAAGAGCTaGAGAGTAGATCTGGGCTGCTGGCGGCTGCCGGCTGGTTCTCCC | + |
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Preference number: 5 (lower is better) Translates to: HWKLYIHFLLGREKS*RVDLGCWRLPAGSP Trigger: GGGAGAACCAGCCGGCAGCCGCCAGCAGCCCAGATCTACTCTTCAGCTCTTCTCCCTTCCCAGAAGAAAGTGAATGTACAATTTCCAGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000232413.2 |
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| CDS-3UTR CAA 90 bp | GCCCTTCAGGTCTGTCCTAAGTCAGCTGGCCCACCCTGCCACCTTTGCATGCCCGCACTGCACTGGAAATaGTACATTCACTTTCTTCTG | + |
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Preference number: 5 (lower is better) Translates to: ALQVCPKSAGPPCHLCMPALHWK*YIHFLL Trigger: CAGAAGAAAGTGAATGTACAATTTCCAGTGCAGTGC...GGGCATGCAAAGGTGGCAGGGTGGGCCAGCTGACTTAGGACAGACCTGAAGGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000232413.2 |
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| CDS-3UTR CAA 90 bp | CCAAAGACAGGGTCACAGTTGTCAAAGAATCCCCTCGAGGCAGCCTCAGGGATCGTCAAATCATTGGCCTaGAGGAAGCAGGAGTCTGGT | + |
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Preference number: 5 (lower is better) Translates to: PKTGSQLSKNPLEAASGIVKSLA*RKQESG Trigger: ACCAGACTCCTGCTTCCTCAAGGCCAATGATTTGAC...GATCCCTGAGGCTGCCTCGAGGGGATTCTTTGACAACTGTGACCCTGTCTTTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114371.5 |
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| CDS-3UTR CAA 90 bp | AGACAGGGTCACAGTTGTCAAAGAATCCCCTCGAGGCAGCCTCAGGGATCCACTTGTTTGACAAGTTCTTaGATTCTCCCCGGAGTCCCC | + |
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Preference number: 5 (lower is better) Translates to: RQGHSCQRIPSRQPQGSTCLTSS*ILPGVP Trigger: GGGGACTCCGGGGAGAATCAAAGAACTTGTCAAACA...AGTGGATCCCTGAGGCTGCCTCGAGGGGATTCTTTGACAACTGTGACCCTGTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114371.5 |
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| CDS TCA 90 bp | GTTCTTCTAATTCTATCACGGAACGGCTGCTGCTGTAATGGTCTCTaGTCAGCTTCTGAAGGTCCTCAGGGGTCCCTGGTTTGGGCTCTG | + |
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Preference number: 5 (lower is better) Translates to: VLLILSRNGCCCNGL*SASEGPQGSLVWAL Trigger: CAGAGCCCAAACCAGGGACCCCTGAGGACCTTCAGAAGCTGATCAGAGACCATTACAGCAGCAGCCGTTCCGTGATAGAATTAGAAGAAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114371.5 |
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| CDS-3UTR CAA 90 bp | TCACAGTTGTCAAAGAATCCCCTCGAGGCAGCCTCAGGGATCCACTGGGTGATGCTGCTTTGGGTTCCTTaGTTTGTGTCAGGAAACACT | + |
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Preference number: 5 (lower is better) Translates to: SQLSKNPLEAASGIHWVMLLWVP*FVSGNT Trigger: AGTGTTTCCTGACACAAACAAAGGAACCCAAAGCAG...CATCACCCAGTGGATCCCTGAGGCTGCCTCGAGGGGATTCTTTGACAACTGTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114371.5 |
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| CDS-3UTR CAA 90 bp | TCAAAGAATCCCCTCGAGGCAGCCTCAGGGATCCACTGGGTGATGGACTTAACAACTTTGGCATCTCCTTaGAATGCTGTCAGAGACCTG | + |
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Preference number: 5 (lower is better) Translates to: SKNPLEAASGIHWVMDLTTLASP*NAVRDL Trigger: CAGGTCTCTGACAGCATTCAAAGGAGATGCCAAAGT...TGTTAAGTCCATCACCCAGTGGATCCCTGAGGCTGCCTCGAGGGGATTCTTTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114371.5 |
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| CDS-3UTR CAA 90 bp | GCCCAAAGACAGGGTCACAGTTGTCAAAGAATCCCCTCGAGGCAGCCTCAGGGATGGAGGCCATCTTGTTaGACAAGTTCTTTGATTCTC | + |
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Preference number: 5 (lower is better) Translates to: AQRQGHSCQRIPSRQPQGWRPSC*TSSLIL Trigger: GAGAATCAAAGAACTTGTCAAACAAGATGGCCTCCA...TCCCTGAGGCTGCCTCGAGGGGATTCTTTGACAACTGTGACCCTGTCTTTGGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114371.5 |
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| CDS-3UTR CAA 90 bp | TCCCCTCGAGGCAGCCTCAGGGATCCACTGGGTGATGGACTTAACATGATTACGTTTGGGTTCCTTTGTTaGTGTCAGGAAACACTCAGT | + |
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Preference number: 5 (lower is better) Translates to: SPRGSLRDPLGDGLNMITFGFLC*CQETLS Trigger: ACTGAGTGTTTCCTGACACAAACAAAGGAACCCAAA...CGTAATCATGTTAAGTCCATCACCCAGTGGATCCCTGAGGCTGCCTCGAGGGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114371.5 |
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| CDS CCA 90 bp | TTTTCTTCTTCTTCCACTTCCTGGTCTTCCGAGAGTCCTCTGCTTTaGGTTCCTTTGTTTGTGTCAGGAAACACTCAGTGGGCTGTTGGG | + |
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Preference number: 5 (lower is better) Translates to: FSSSSTSWSSESPLL*VPLFVSGNTQWAVG Trigger: CCCAACAGCCCACTGAGTGTTTCCTGACACAAACAAAGGAACCCAAAGCAGAGGACTCTCGGAAGACCAGGAAGTGGAAGAAGAAGAAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114371.5 |
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| CDS-3UTR CAA 90 bp | TCAAAGAATCCCCTCGAGGCAGCCTCAGGGATCCACTGGGTGATGGACTTAACACAAATGGAGGCCATCTaGTTTGACAAGTTCTTTGAT | + |
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Preference number: 5 (lower is better) Translates to: SKNPLEAASGIHWVMDLTQMEAI*FDKFFD Trigger: ATCAAAGAACTTGTCAAACAAGATGGCCTCCATTTG...TGTTAAGTCCATCACCCAGTGGATCCCTGAGGCTGCCTCGAGGGGATTCTTTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114371.5 |
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| CDS GCA 90 bp | AGAAATTTTCTTCTTCTTCCACTTCCTGGTCTTCCGAGAGTCCTCTaGTTTGGGTTCCTTTGTTTGTGTCAGGAAACACTCAGTGGGCTG | + |
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Preference number: 5 (lower is better) Translates to: RNFLLLPLPGLPRVL*FGFLCLCQETLSGL Trigger: CAGCCCACTGAGTGTTTCCTGACACAAACAAAGGAACCCAAAGCAGAGGACTCTCGGAAGACCAGGAAGTGGAAGAAGAAGAAAATTTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114371.5 |
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| CDS-3UTR CAA 90 bp | TGGAGTAAGTTACTGAGTGCTTGCAATATGTTGGCAACTGGACTCTTCATCAGGCGAGAGTCCTCTGCTTaGGGTTCCTTTGTTTGTGTC | + |
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Preference number: 5 (lower is better) Translates to: WSKLLSACNMLATGLFIRRESSA*GSFVCV Trigger: GACACAAACAAAGGAACCCAAAGCAGAGGACTCTCG...CCTGATGAAGAGTCCAGTTGCCAACATATTGCAAGCACTCAGTAACTTACTCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114371.5 |
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| CDS TCA 90 bp | TTTACCCACTTAGGACAGATTTCTTTTAGGTATGAAGAGAGACTGTaGGTCAAATCATTGGCCTTGAGGAAGCAGGAGTCTGGTAGGTGC | + |
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Preference number: 5 (lower is better) Translates to: FTHLGQISFRYEERL*VKSLALRKQESGRC Trigger: GCACCTACCAGACTCCTGCTTCCTCAAGGCCAATGATTTGACTCACAGTCTCTCTTCATACCTAAAAGAAATCTGTCCTAAGTGGGTAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114371.5 |
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| CDS CCA 72 bp | CCCCTCCTTCCTCACCACCTGATTGCTCTGGGCTGCTaGCGGCTGCCGGCTGGTTCTCCCACCACTCGTCTC | + |
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Preference number: 6 (lower is better) Translates to: PLLPHHLIALGC*RLPAGSPTTRL Trigger: GAGACGAGTGGTGGGAGAACCAGCCGGCAGCCGCCAGCAGCCCAGAGCAATCAGGTGGTGAGGAAGGAGGGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114371.5 |
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| CDS CCA 72 bp | CTGAAGAGTAGATCTGGGCTGCTGGCGGCTGCCGGCTaGTTCTCCCACCACTCGTCTCCCAGATCGTCTGCC | + |
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Preference number: 6 (lower is better) Translates to: LKSRSGLLAAAG*FSHHSSPRSSA Trigger: GGCAGACGATCTGGGAGACGAGTGGTGGGAGAACCAGCCGGCAGCCGCCAGCAGCCCAGATCTACTCTTCAG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000232413.2 |
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| CDS TCA 72 bp | TTGTACATTCACTTTCTTCTGGGAAGGGAGAAGAGCTaGAGAGTAGATCTGGGCTGCTGGCGGCTGCCGGCT | + |
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Preference number: 6 (lower is better) Translates to: LYIHFLLGREKS*RVDLGCWRLPA Trigger: AGCCGGCAGCCGCCAGCAGCCCAGATCTACTCTTCAGCTCTTCTCCCTTCCCAGAAGAAAGTGAATGTACAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000232413.2 |
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| CDS CCA 72 bp | TCCTTTGTTTGTGTCAGGAAACACTCAGTGGGCTGTTaGGTTTTCTCAGGAACCGGAGCTGTGTCCTGCTGT | + |
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Preference number: 6 (lower is better) Translates to: SFVCVRKHSVGC*VFSGTGAVSCC Trigger: ACAGCAGGACACAGCTCCGGTTCCTGAGAAAACCCAACAGCCCACTGAGTGTTTCCTGACACAAACAAAGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114371.5 |
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| CDS CAA 72 bp | TTCCTTTGTTTGTGTCAGGAAACACTCAGTGGGCTGTaGGGTTTTCTCAGGAACCGGAGCTGTGTCCTGCTG | + |
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Preference number: 6 (lower is better) Translates to: FLCLCQETLSGL*GFLRNRSCVLL Trigger: CAGCAGGACACAGCTCCGGTTCCTGAGAAAACCCAACAGCCCACTGAGTGTTTCCTGACACAAACAAAGGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114371.5 |
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| CDS CAA 90 bp | TGCTTTGGGTTCCTTTGTTTGTGTCAGGAAACACTCAGTGGGCTGTaGGGTTTTCTCAGGAACCGGAGCTGTGTCCTGCTGTGTCATTTC | + |
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Preference number: 6 (lower is better) Translates to: CFGFLCLCQETLSGL*GFLRNRSCVLLCHF Trigger: GAAATGACACAGCAGGACACAGCTCCGGTTCCTGAGAAAACCCAACAGCCCACTGAGTGTTTCCTGACACAAACAAAGGAACCCAAAGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114371.5 |
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| CDS CAA 90 bp | TCTTCCACTTCCTGGTCTTCCGAGAGTCCTCTGCTTTGGGTTCCTTaGTTTGTGTCAGGAAACACTCAGTGGGCTGTTGGGTTTTCTCAG | + |
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Preference number: 6 (lower is better) Translates to: SSTSWSSESPLLWVP*FVSGNTQWAVGFSQ Trigger: CTGAGAAAACCCAACAGCCCACTGAGTGTTTCCTGACACAAACAAAGGAACCCAAAGCAGAGGACTCTCGGAAGACCAGGAAGTGGAAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114371.5 |
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| CDS TCA 72 bp | AAAGACCCAGCTTCAAGGAGTCCGACTTGCACAGGCTaGACACTCCCATATCTAGAAGCTCGAAAACCTCCT | + |
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Preference number: 6 (lower is better) Translates to: KDPASRSPTCTG*TLPYLEARKPP Trigger: AGGAGGTTTTCGAGCTTCTAGATATGGGAGTGTTCAGCCTGTGCAAGTCGGACTCCTTGAAGCTGGGTCTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114371.5 |
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| CDS CCA 72 bp | CTTTGGGTTCCTTTGTTTGTGTCAGGAAACACTCAGTaGGCTGTTGGGTTTTCTCAGGAACCGGAGCTGTGT | + |
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Preference number: 6 (lower is better) Translates to: LWVPLFVSGNTQ*AVGFSQEPELC Trigger: ACACAGCTCCGGTTCCTGAGAAAACCCAACAGCCCACTGAGTGTTTCCTGACACAAACAAAGGAACCCAAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114371.5 |
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| CDS CCA 72 bp | TCTTCCACTTCCTGGTCTTCCGAGAGTCCTCTGCTTTaGGTTCCTTTGTTTGTGTCAGGAAACACTCAGTGG | + |
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Preference number: 6 (lower is better) Translates to: SSTSWSSESPLL*VPLFVSGNTQW Trigger: CCACTGAGTGTTTCCTGACACAAACAAAGGAACCCAAAGCAGAGGACTCTCGGAAGACCAGGAAGTGGAAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114371.5 |
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| CDS CCA 72 bp | GACAGGCTTTGGGGAGGTCAGCTAGTGACATCCATTTaGTACGCTGCACTGCACTGGAAATTGTACATTCAC | + |
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Preference number: 6 (lower is better) Translates to: DRLWGGQLVTSI*YAALHWKLYIH Trigger: GTGAATGTACAATTTCCAGTGCAGTGCAGCGTACCAAATGGATGTCACTAGCTGACCTCCCCAAAGCCTGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000232413.2 |
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| CDS CCA 72 bp | GGAAGAATAAGTCTGACTCGAGTGTCAGACAGGCTTTaGGGAGGTCAGCTAGTGACATCCATTTGGTACGCT | + |
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Preference number: 6 (lower is better) Translates to: GRISLTRVSDRL*GGQLVTSIWYA Trigger: AGCGTACCAAATGGATGTCACTAGCTGACCTCCCCAAAGCCTGTCTGACACTCGAGTCAGACTTATTCTTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000232413.2 |
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| CDS CAA 72 bp | GGTCTTCCGAGAGTCCTCTGCTTTGGGTTCCTTTGTTaGTGTCAGGAAACACTCAGTGGGCTGTTGGGTTTT | + |
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Preference number: 6 (lower is better) Translates to: GLPRVLCFGFLC*CQETLSGLLGF Trigger: AAAACCCAACAGCCCACTGAGTGTTTCCTGACACAAACAAAGGAACCCAAAGCAGAGGACTCTCGGAAGACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114371.5 |
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| CDS CAA 72 bp | CTGCAGAGGATCAGCATCAGGACCGACTTCTTCTCGTaGTGGGTTTTCCGAAGTTTTACCCACTTAGGACAG | + |
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Preference number: 6 (lower is better) Translates to: LQRISIRTDFFS*WVFRSFTHLGQ Trigger: CTGTCCTAAGTGGGTAAAACTTCGGAAAACCCACAACGAGAAGAAGTCGGTCCTGATGCTGATCCTCTGCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114371.5 |
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| CDS CAA 72 bp | AGGAAGAATAAGTCTGACTCGAGTGTCAGACAGGCTTaGGGGAGGTCAGCTAGTGACATCCATTTGGTACGC | + |
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Preference number: 6 (lower is better) Translates to: RKNKSDSSVRQA*GRSASDIHLVR Trigger: GCGTACCAAATGGATGTCACTAGCTGACCTCCCCAAAGCCTGTCTGACACTCGAGTCAGACTTATTCTTCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000232413.2 |
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| CDS GCA 72 bp | CTTCTTCTTCCACTTCCTGGTCTTCCGAGAGTCCTCTaGTTTGGGTTCCTTTGTTTGTGTCAGGAAACACTC | + |
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Preference number: 6 (lower is better) Translates to: LLLPLPGLPRVL*FGFLCLCQETL Trigger: GAGTGTTTCCTGACACAAACAAAGGAACCCAAAGCAGAGGACTCTCGGAAGACCAGGAAGTGGAAGAAGAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114371.5 |
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| CDS CAA 72 bp | TTCTTCCACTTCCTGGTCTTCCGAGAGTCCTCTGCTTaGGGTTCCTTTGTTTGTGTCAGGAAACACTCAGTG | + |
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Preference number: 6 (lower is better) Translates to: FFHFLVFRESSA*GSFVCVRKHSV Trigger: CACTGAGTGTTTCCTGACACAAACAAAGGAACCCAAAGCAGAGGACTCTCGGAAGACCAGGAAGTGGAAGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114371.5 |
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| CDS CAA 72 bp | AGACAGGCTTTGGGGAGGTCAGCTAGTGACATCCATTaGGTACGCTGCACTGCACTGGAAATTGTACATTCA | + |
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Preference number: 6 (lower is better) Translates to: RQALGRSASDIH*VRCTALEIVHS Trigger: TGAATGTACAATTTCCAGTGCAGTGCAGCGTACCAAATGGATGTCACTAGCTGACCTCCCCAAAGCCTGTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000232413.2 |
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| CDS CAA 90 bp | TCGAGTGTCAGACAGGCTTTGGGGAGGTCAGCTAGTGACATCCATTaGGTACGCTGCACTGCACTGGAAATTGTACATTCACTTTCTTCT | + |
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Preference number: 6 (lower is better) Translates to: SSVRQALGRSASDIH*VRCTALEIVHSLSS Trigger: AGAAGAAAGTGAATGTACAATTTCCAGTGCAGTGCAGCGTACCAAATGGATGTCACTAGCTGACCTCCCCAAAGCCTGTCTGACACTCGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000232413.2 |
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| CDS CCA 72 bp | CAGAGGATCAGCATCAGGACCGACTTCTTCTCGTTGTaGGTTTTCCGAAGTTTTACCCACTTAGGACAGATT | + |
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Preference number: 6 (lower is better) Translates to: QRISIRTDFFSL*VFRSFTHLGQI Trigger: AATCTGTCCTAAGTGGGTAAAACTTCGGAAAACCCACAACGAGAAGAAGTCGGTCCTGATGCTGATCCTCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114371.5 |
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| CDS CAA 90 bp | TCAGCTTCTGAAGGTCCTCAGGGGTCCCTGGTTTGGGCTCTGATTTaGCAAGAATATCAGAAATTTTCTTCTTCTTCCACTTCCTGGTCT | + |
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Preference number: 6 (lower is better) Translates to: SASEGPQGSLVWALI*QEYQKFSSSSTSWS Trigger: AGACCAGGAAGTGGAAGAAGAAGAAAATTTCTGATATTCTTGCAAAATCAGAGCCCAAACCAGGGACCCCTGAGGACCTTCAGAAGCTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114371.5 |
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| CDS TCA 72 bp | TTAGGACAGATTTCTTTTAGGTATGAAGAGAGACTGTaGGTCAAATCATTGGCCTTGAGGAAGCAGGAGTCT | + |
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Preference number: 6 (lower is better) Translates to: LGQISFRYEERL*VKSLALRKQES Trigger: AGACTCCTGCTTCCTCAAGGCCAATGATTTGACTCACAGTCTCTCTTCATACCTAAAAGAAATCTGTCCTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114371.5 |
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