Pregenerated sensors for CMPK1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028719Ensembl transcript IDs: ENSMUST00000030491.9, ENSMUST00000129317.2, ENSMUST00000133066.2
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGACGTATGGACTGGACAGACGTTCACTCAAAGGTGAAAAGCATTTaGAGCTTTGGCAGAGGACCTGGGTTGTCCCAAGCACCTACACGG | + |
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Preference number: 1 (lower is better) Translates to: RRMDWTDVHSKVKSI*SFGRGPGLSQAPTR Trigger: CCGTGTAGGTGCTTGGGACAACCCAGGTCCTCTGCCAAAGCTGCAAATGCTTTTCACCTTTGAGTGAACGTCTGTCCAGTCCATACGTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030491.9 |
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| 3UTR TCA 90 bp | ATGGACTGGACAGACGTATGGACTGGACAGACGTTCACTCAAAGGTaGAAAGCATTTGCAGCTTTGGCAGAGGACCTGGGTTGTCCCAAG | + |
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Preference number: 1 (lower is better) Translates to: MDWTDVWTGQTFTQR*KAFAALAEDLGCPK Trigger: CTTGGGACAACCCAGGTCCTCTGCCAAAGCTGCAAATGCTTTTCACCTTTGAGTGAACGTCTGTCCAGTCCATACGTCTGTCCAGTCCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030491.9 |
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| 3UTR GCA 90 bp | CCTGTGTCACAGAGCACAGGAATACAAGTCACTACTTGTGACCCTTaGCCCACAGACTATGTCAGAAGAAAGCTGACAATCCTGCCCAGG | + |
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Preference number: 1 (lower is better) Translates to: PVSQSTGIQVTTCDP*PTDYVRRKLTILPR Trigger: CCTGGGCAGGATTGTCAGCTTTCTTCTGACATAGTCTGTGGGGCAAGGGTCACAAGTAGTGACTTGTATTCCTGTGCTCTGTGACACAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030491.9 |
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| 3UTR TCA 90 bp | AGTCAGTCCTGTGTCACAGAGCACAGGAATACAAGTCACTACTTGTaGCCCTTGCCCCACAGACTATGTCAGAAGAAAGCTGACAATCCT | + |
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Preference number: 1 (lower is better) Translates to: SQSCVTEHRNTSHYL*PLPHRLCQKKADNP Trigger: AGGATTGTCAGCTTTCTTCTGACATAGTCTGTGGGGCAAGGGTCACAAGTAGTGACTTGTATTCCTGTGCTCTGTGACACAGGACTGACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030491.9 |
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| 3UTR CCA 90 bp | GCAGCAGGAGATCCGACACCTTCTGACTTTTGTGGGCACCAGGAATaGACATGGTACACAAACATACATGCAGACAAAACATTCATAAAC | + |
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Preference number: 1 (lower is better) Translates to: AAGDPTPSDFCGHQE*TWYTNIHADKTFIN Trigger: GTTTATGAATGTTTTGTCTGCATGTATGTTTGTGTACCATGTCCATTCCTGGTGCCCACAAAAGTCAGAAGGTGTCGGATCTCCTGCTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030491.9 |
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| 3UTR GCA 90 bp | AAGTCTGTGTTCTATGTAACACTGTGTACTGAACAGTGTAAGCGCTaGAATGAGGGACACTCCAATCTCTCTCTTAAGAAACTCAGACAT | + |
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Preference number: 1 (lower is better) Translates to: KSVFYVTLCTEQCKR*NEGHSNLSLKKLRH Trigger: ATGTCTGAGTTTCTTAAGAGAGAGATTGGAGTGTCCCTCATTGCAGCGCTTACACTGTTCAGTACACAGTGTTACATAGAACACAGACTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030491.9 |
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| 3UTR CCA 90 bp | GGAGATCCGACACCTTCTGACTTTTGTGGGCACCAGGAATGGACATaGTACACAAACATACATGCAGACAAAACATTCATAAACATTAAA | + |
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Preference number: 1 (lower is better) Translates to: GDPTPSDFCGHQEWT*YTNIHADKTFINIK Trigger: TTTAATGTTTATGAATGTTTTGTCTGCATGTATGTTTGTGTACCATGTCCATTCCTGGTGCCCACAAAAGTCAGAAGGTGTCGGATCTCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030491.9 |
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| 3UTR-3UTR TCA 90 bp | GCATTTGCAGCTTTGGCAGAGGACCTGGGTTGTCCCAAGCACCTACACGGCAACACCCATAATGAGATCTaGTGCCCTCTTCTGGCACGT | + |
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Preference number: 2 (lower is better) Translates to: AFAALAEDLGCPKHLHGNTHNEI*CPLLAR Trigger: ACGTGCCAGAAGAGGGCATCAGATCTCATTATGGGT...GTTGCCGTGTAGGTGCTTGGGACAACCCAGGTCCTCTGCCAAAGCTGCAAATGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030491.9 |
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| 3UTR CAA 90 bp | CACTCAAAGGTGAAAAGCATTTGCAGCTTTGGCAGAGGACCTGGGTaGTCCCAAGCACCTACACGGCAACTCACAATTTTCTATAACTCT | + |
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Preference number: 2 (lower is better) Translates to: HSKVKSICSFGRGPG*SQAPTRQLTIFYNS Trigger: AGAGTTATAGAAAATTGTGAGTTGCCGTGTAGGTGCTTGGGACAACCCAGGTCCTCTGCCAAAGCTGCAAATGCTTTTCACCTTTGAGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030491.9 |
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| 3UTR-3UTR GCA 90 bp | GCACCAGGAATGGACATGGTACACAAACATACATGCAGACAAAACATTCATAAAGGCTCTGAAGCCCCGTaGCCTGACTCAAACCTTGGA | + |
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Preference number: 2 (lower is better) Translates to: APGMDMVHKHTCRQNIHKGSEAP*PDSNLG Trigger: TCCAAGGTTTGAGTCAGGGCACGGGGCTTCAGAGCC...TTTATGAATGTTTTGTCTGCATGTATGTTTGTGTACCATGTCCATTCCTGGTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030491.9 |
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| 3UTR-3UTR CCA 90 bp | AAGTCAGAAACTACAGTGGGTTGTTTGTCTGTTGCAAATGCCAGAGAGATTTTGAGGGAGCTGGCAAAATaGCAAAATGGCTCAGCTGGT | + |
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Preference number: 2 (lower is better) Translates to: KSETTVGCLSVANAREILRELAK*QNGSAG Trigger: ACCAGCTGAGCCATTTTGCCATTTTGCCAGCTCCCT...CAAAATCTCTCTGGCATTTGCAACAGACAAACAACCCACTGTAGTTTCTGACTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030491.9 |
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| 3UTR CAA 90 bp | AGTAAAGTCCTTCAAGACTCGCAAAAGCTTCTCAGTACTGCATCTTaGATAAACAGAACGACTAAACTAGCAAAGTCAGATGTAGCTCAT | + |
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Preference number: 2 (lower is better) Translates to: SKVLQDSQKLLSTAS*INRTTKLAKSDVAH Trigger: ATGAGCTACATCTGACTTTGCTAGTTTAGTCGTTCTGTTTATCAAAGATGCAGTACTGAGAAGCTTTTGCGAGTCTTGAAGGACTTTACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030491.9 |
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| 3UTR-3UTR TCA 90 bp | AAGTCAGAAACTACAGTGGGTTGTTTGTCTGTTGCAAATGCCAGAGAGATTTTGAGCAATATTCAAGCATaGTTTCAAAGATGCCTTCAG | + |
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Preference number: 2 (lower is better) Translates to: KSETTVGCLSVANAREILSNIQA*FQRCLQ Trigger: CTGAAGGCATCTTTGAAATCATGCTTGAATATTGCT...CAAAATCTCTCTGGCATTTGCAACAGACAAACAACCCACTGTAGTTTCTGACTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030491.9 |
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| 3UTR GCA 72 bp | GACTGGACAGACGTTCACTCAAAGGTGAAAAGCATTTaGAGCTTTGGCAGAGGACCTGGGTTGTCCCAAGCA | + |
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Preference number: 3 (lower is better) Translates to: DWTDVHSKVKSI*SFGRGPGLSQA Trigger: TGCTTGGGACAACCCAGGTCCTCTGCCAAAGCTGCAAATGCTTTTCACCTTTGAGTGAACGTCTGTCCAGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030491.9 |
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| 3UTR CCA 72 bp | AGACGTTCACTCAAAGGTGAAAAGCATTTGCAGCTTTaGCAGAGGACCTGGGTTGTCCCAAGCACCTACACG | + |
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Preference number: 3 (lower is better) Translates to: RRSLKGEKHLQL*QRTWVVPSTYT Trigger: CGTGTAGGTGCTTGGGACAACCCAGGTCCTCTGCCAAAGCTGCAAATGCTTTTCACCTTTGAGTGAACGTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030491.9 |
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| 3UTR TCA 72 bp | ACAGACGTATGGACTGGACAGACGTTCACTCAAAGGTaGAAAGCATTTGCAGCTTTGGCAGAGGACCTGGGT | + |
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Preference number: 3 (lower is better) Translates to: TDVWTGQTFTQR*KAFAALAEDLG Trigger: ACCCAGGTCCTCTGCCAAAGCTGCAAATGCTTTTCACCTTTGAGTGAACGTCTGTCCAGTCCATACGTCTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030491.9 |
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| 3UTR CCA 72 bp | AAAGGTGAAAAGCATTTGCAGCTTTGGCAGAGGACCTaGGTTGTCCCAAGCACCTACACGGCAACTCACAAT | + |
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Preference number: 3 (lower is better) Translates to: KGEKHLQLWQRT*VVPSTYTATHN Trigger: ATTGTGAGTTGCCGTGTAGGTGCTTGGGACAACCCAGGTCCTCTGCCAAAGCTGCAAATGCTTTTCACCTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030491.9 |
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| 3UTR GCA 72 bp | CAGAGCACAGGAATACAAGTCACTACTTGTGACCCTTaGCCCACAGACTATGTCAGAAGAAAGCTGACAATC | + |
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Preference number: 3 (lower is better) Translates to: QSTGIQVTTCDP*PTDYVRRKLTI Trigger: GATTGTCAGCTTTCTTCTGACATAGTCTGTGGGGCAAGGGTCACAAGTAGTGACTTGTATTCCTGTGCTCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030491.9 |
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| 3UTR CCA 72 bp | GATCCGACACCTTCTGACTTTTGTGGGCACCAGGAATaGACATGGTACACAAACATACATGCAGACAAAACA | + |
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Preference number: 3 (lower is better) Translates to: DPTPSDFCGHQE*TWYTNIHADKT Trigger: TGTTTTGTCTGCATGTATGTTTGTGTACCATGTCCATTCCTGGTGCCCACAAAAGTCAGAAGGTGTCGGATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030491.9 |
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| 3UTR CCA 72 bp | ACTCCAATCTCTCTCTTAAGAAACTCAGACATGGACTaGACAGACGTATGGACTGGACAGACGTTCACTCAA | + |
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Preference number: 3 (lower is better) Translates to: TPISLLRNSDMD*TDVWTGQTFTQ Trigger: TTGAGTGAACGTCTGTCCAGTCCATACGTCTGTCCAGTCCATGTCTGAGTTTCTTAAGAGAGAGATTGGAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030491.9 |
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| 3UTR-3UTR CAA 90 bp | AGAACTGAATCAAATTACCATAAACTAGTGAATGCATGTCAAGGGTCTACTGGTGCCCTGACTCAAACCTaGGAAGCAAAGACTATGCAC | + |
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Preference number: 3 (lower is better) Translates to: RTESNYHKLVNACQGSTGALTQT*EAKTMH Trigger: GTGCATAGTCTTTGCTTCCAAGGTTTGAGTCAGGGC...ACCAGTAGACCCTTGACATGCATTCACTAGTTTATGGTAATTTGATTCAGTTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030491.9 |
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| 3UTR TCA 72 bp | GGAAAGTCTGTACCCTCCCTTCATTTCATAGCTGTGTaGTTAATCATCAATAAAACCTCTGCTCCACTGGAT | + |
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Preference number: 3 (lower is better) Translates to: GKSVPSLHFIAV*LIINKTSAPLD Trigger: ATCCAGTGGAGCAGAGGTTTTATTGATGATTAATCACACAGCTATGAAATGAAGGGAGGGTACAGACTTTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030491.9 |
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| 3UTR GCA 72 bp | TTCTATGTAACACTGTGTACTGAACAGTGTAAGCGCTaGAATGAGGGACACTCCAATCTCTCTCTTAAGAAA | + |
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Preference number: 3 (lower is better) Translates to: FYVTLCTEQCKR*NEGHSNLSLKK Trigger: TTTCTTAAGAGAGAGATTGGAGTGTCCCTCATTGCAGCGCTTACACTGTTCAGTACACAGTGTTACATAGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030491.9 |
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| CDS-3UTR GCA 90 bp | GACGTTCACTCAAAGGTGAAAAGCATTTGCAGCTTTGGCAGAGGACCTGGGTTGGGAAGAGCCGCAGTGTaGGGGTCAGCGGCGGGCAGC | + |
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Preference number: 4 (lower is better) Translates to: DVHSKVKSICSFGRGPGLGRAAV*GSAAGS Trigger: GCTGCCCGCCGCTGACCCGCACACTGCGGCTCTTCC...CAACCCAGGTCCTCTGCCAAAGCTGCAAATGCTTTTCACCTTTGAGTGAACGTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030491.9 |
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| CDS-3UTR CCA 90 bp | CAGAAAGGTGTGTGTAGCCGTATTTCATTTCCTGACATCAGAGAACTCAAACTGACAATGCGCGCGCACTaGGTCCCCTTGCCCGCACCG | + |
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Preference number: 4 (lower is better) Translates to: QKGVCSRISFPDIRELKLTMRAH*VPLPAP Trigger: CGGTGCGGGCAAGGGGACCCAGTGCGCGCGCATTGT...CAGTTTGAGTTCTCTGATGTCAGGAAATGAAATACGGCTACACACACCTTTCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129317.2 |
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| CDS-3UTR GCA 90 bp | TGGACAGACGTTCACTCAAAGGTGAAAAGCATTTGCAGCTTTGGCAGAGGACCTCGTATTTCTCGACAATaGGCGCGCACTGGGTCCCCT | + |
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Preference number: 4 (lower is better) Translates to: WTDVHSKVKSICSFGRGPRISRQ*ARTGSP Trigger: AGGGGACCCAGTGCGCGCGCATTGTCGAGAAATACG...AGGTCCTCTGCCAAAGCTGCAAATGCTTTTCACCTTTGAGTGAACGTCTGTCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030491.9 |
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| CDS-3UTR CCA 90 bp | TGGACAGACGTTCACTCAAAGGTGAAAAGCATTTGCAGCTTTGGCAGAGGACCTAACGGCTTCATGAGGTaGAGAGGGAAGAGCCGCAGT | + |
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Preference number: 4 (lower is better) Translates to: WTDVHSKVKSICSFGRGPNGFMR*RGKSRS Trigger: ACTGCGGCTCTTCCCTCTCCACCTCATGAAGCCGTT...AGGTCCTCTGCCAAAGCTGCAAATGCTTTTCACCTTTGAGTGAACGTCTGTCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030491.9 |
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| CDS-3UTR CCA 90 bp | GCACCAGGAATGGACATGGTACACAAACATACATGCAGACAAAACATTCATAAAACAATGCGCGCGCACTaGGTCCCCTTGCCCGCACCG | + |
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Preference number: 4 (lower is better) Translates to: APGMDMVHKHTCRQNIHKTMRAH*VPLPAP Trigger: CGGTGCGGGCAAGGGGACCCAGTGCGCGCGCATTGT...TTTATGAATGTTTTGTCTGCATGTATGTTTGTGTACCATGTCCATTCCTGGTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030491.9 |
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| 3UTR CAA 72 bp | GTGAAAAGCATTTGCAGCTTTGGCAGAGGACCTGGGTaGTCCCAAGCACCTACACGGCAACTCACAATTTTC | + |
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Preference number: 4 (lower is better) Translates to: VKSICSFGRGPG*SQAPTRQLTIF Trigger: GAAAATTGTGAGTTGCCGTGTAGGTGCTTGGGACAACCCAGGTCCTCTGCCAAAGCTGCAAATGCTTTTCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030491.9 |
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| CDS-3UTR TCA 90 bp | TGTGTAGCCGTATTTCATTTCCTGACATCAGAGAACTCAAACTGGCAAGATTTCCGACCAACGGCTTCATaGGGTGGAGAGGGAAGAGCC | + |
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Preference number: 4 (lower is better) Translates to: CVAVFHFLTSENSNWQDFRPTAS*GGEGRA Trigger: GGCTCTTCCCTCTCCACCTCATGAAGCCGTTGGTCG...GAAATCTTGCCAGTTTGAGTTCTCTGATGTCAGGAAATGAAATACGGCTACACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129317.2 |
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| CDS-3UTR TCA 90 bp | GCACCAGGAATGGACATGGTACACAAACATACATGCAGACAAAACATTCATAAACGACCAACGGCTTCATaGGGTGGAGAGGGAAGAGCC | + |
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Preference number: 4 (lower is better) Translates to: APGMDMVHKHTCRQNIHKRPTAS*GGEGRA Trigger: GGCTCTTCCCTCTCCACCTCATGAAGCCGTTGGTCG...TTTATGAATGTTTTGTCTGCATGTATGTTTGTGTACCATGTCCATTCCTGGTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030491.9 |
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| CDS-3UTR GCA 90 bp | GTGTGTAGCCGTATTTCATTTCCTGACATCAGAGAACTCAAACTGGCAAGATTTTATCACTCTCGACAATaGGCGCGCACTGGGTCCCCT | + |
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Preference number: 4 (lower is better) Translates to: VCSRISFPDIRELKLARFYHSRQ*ARTGSP Trigger: AGGGGACCCAGTGCGCGCGCATTGTCGAGAGTGATA...AAATCTTGCCAGTTTGAGTTCTCTGATGTCAGGAAATGAAATACGGCTACACAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000129317.2 |
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| CDS-3UTR CCA 90 bp | GCCGTATTTCATTTCCTGACATCAGAGAACTCAAACTGGCAAGATTTCTGGTGTAACGGCTTCATGAGGTaGAGAGGGAAGAGCCGCAGT | + |
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Preference number: 4 (lower is better) Translates to: AVFHFLTSENSNWQDFWCNGFMR*RGKSRS Trigger: ACTGCGGCTCTTCCCTCTCCACCTCATGAAGCCGTT...ACACCAGAAATCTTGCCAGTTTGAGTTCTCTGATGTCAGGAAATGAAATACGGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129317.2 |
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| CDS-3UTR CCA 90 bp | AAGTCAGAAACTACAGTGGGTTGTTTGTCTGTTGCAAATGCCAGAGAGATTTTGCTGCTTTTCCATCCATaGTTTTGTTCCAACCTTGAA | + |
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Preference number: 4 (lower is better) Translates to: KSETTVGCLSVANAREILLLFHP*FCSNLE Trigger: TTCAAGGTTGGAACAAAACCATGGATGGAAAAGCAG...CAAAATCTCTCTGGCATTTGCAACAGACAAACAACCCACTGTAGTTTCTGACTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030491.9 |
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| 3UTR CAA 72 bp | CTTCAAGACTCGCAAAAGCTTCTCAGTACTGCATCTTaGATAAACAGAACGACTAAACTAGCAAAGTCAGAT | + |
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Preference number: 4 (lower is better) Translates to: LQDSQKLLSTAS*INRTTKLAKSD Trigger: ATCTGACTTTGCTAGTTTAGTCGTTCTGTTTATCAAAGATGCAGTACTGAGAAGCTTTTGCGAGTCTTGAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030491.9 |
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| 3UTR CAA 72 bp | AAACTTATTCATAAGTCAGAAACTACAGTGGGTTGTTaGTCTGTTGCAAATGCCAGAGAGATTTTGATGACA | + |
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Preference number: 4 (lower is better) Translates to: KLIHKSETTVGC*SVANAREILMT Trigger: TGTCATCAAAATCTCTCTGGCATTTGCAACAGACAAACAACCCACTGTAGTTTCTGACTTATGAATAAGTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030491.9 |
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| CDS TCA 90 bp | TGCCCGCACCGGGCCCGCCCAAAACGAACACGACCAACGGCTTCATaGGGTGGAGAGGGAAGAGCCGCAGTGTGCGGGTCAGCGGCGGGC | + |
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Preference number: 5 (lower is better) Translates to: CPHRARPKRTRPTAS*GGEGRAAVCGSAAG Trigger: GCCCGCCGCTGACCCGCACACTGCGGCTCTTCCCTCTCCACCTCATGAAGCCGTTGGTCGTGTTCGTTTTGGGCGGGCCCGGTGCGGGCA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030491.9 ENSMUST00000133066.2 |
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| CDS GCA 90 bp | GTGTGTAGCCGTATTTCTCGACAATGCGCGCGCACTGGGTCCCCTTaGCCGCACCGGGCCCGCCCAAAACGAACACGACCAACGGCTTCA | + |
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Preference number: 5 (lower is better) Translates to: VCSRISRQCARTGSP*PHRARPKRTRPTAS Trigger: TGAAGCCGTTGGTCGTGTTCGTTTTGGGCGGGCCCGGTGCGGGCAAGGGGACCCAGTGCGCGCGCATTGTCGAGAAATACGGCTACACAC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030491.9 |
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| CDS GCA 90 bp | ATGGGAATATATCACTCTCGACAATGCGCGCGCACTGGGTCCCCTTaGCCGCACCGGGCCCGCCCAAAACGAACACGACCAACGGCTTCA | + |
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Preference number: 5 (lower is better) Translates to: MGIYHSRQCARTGSP*PHRARPKRTRPTAS Trigger: TGAAGCCGTTGGTCGTGTTCGTTTTGGGCGGGCCCGGTGCGGGCAAGGGGACCCAGTGCGCGCGCATTGTCGAGAGTGATATATTCCCAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000129317.2 |
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| CDS-3UTR CAA 90 bp | GCACCAGGAATGGACATGGTACACAAACATACATGCAGACAAAACATTCATAAAGAAGCATCTATCTTCTaGACTTTCCCCATTTCTTCA | + |
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Preference number: 5 (lower is better) Translates to: APGMDMVHKHTCRQNIHKEASIF*TFPISS Trigger: TGAAGAAATGGGGAAAGTCAAGAAGATAGATGCTTC...TTTATGAATGTTTTGTCTGCATGTATGTTTGTGTACCATGTCCATTCCTGGTGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030491.9 |
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| CDS CAA 72 bp | GCAGAACTCTCGACAATGCGCGCGCACTGGGTCCCCTaGCCCGCACCGGGCCCGCCCAAAACGAACACGACC | + |
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Preference number: 6 (lower is better) Translates to: AELSTMRAHWVP*PAPGPPKTNTT Trigger: GGTCGTGTTCGTTTTGGGCGGGCCCGGTGCGGGCAAGGGGACCCAGTGCGCGCGCATTGTCGAGAGTTCTGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000133066.2 |
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| CDS GCA 72 bp | CAGAACTCTCGACAATGCGCGCGCACTGGGTCCCCTTaGCCGCACCGGGCCCGCCCAAAACGAACACGACCA | + |
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Preference number: 6 (lower is better) Translates to: QNSRQCARTGSP*PHRARPKRTRP Trigger: TGGTCGTGTTCGTTTTGGGCGGGCCCGGTGCGGGCAAGGGGACCCAGTGCGCGCGCATTGTCGAGAGTTCTG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000133066.2 |
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| CDS CAA 72 bp | CCGTATTTCTCGACAATGCGCGCGCACTGGGTCCCCTaGCCCGCACCGGGCCCGCCCAAAACGAACACGACC | + |
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Preference number: 6 (lower is better) Translates to: PYFSTMRAHWVP*PAPGPPKTNTT Trigger: GGTCGTGTTCGTTTTGGGCGGGCCCGGTGCGGGCAAGGGGACCCAGTGCGCGCGCATTGTCGAGAAATACGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030491.9 |
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| CDS GCA 72 bp | CGTATTTCTCGACAATGCGCGCGCACTGGGTCCCCTTaGCCGCACCGGGCCCGCCCAAAACGAACACGACCA | + |
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Preference number: 6 (lower is better) Translates to: RISRQCARTGSP*PHRARPKRTRP Trigger: TGGTCGTGTTCGTTTTGGGCGGGCCCGGTGCGGGCAAGGGGACCCAGTGCGCGCGCATTGTCGAGAAATACG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030491.9 |
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| CDS GCA 72 bp | TATCACTCTCGACAATGCGCGCGCACTGGGTCCCCTTaGCCGCACCGGGCCCGCCCAAAACGAACACGACCA | + |
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Preference number: 6 (lower is better) Translates to: YHSRQCARTGSP*PHRARPKRTRP Trigger: TGGTCGTGTTCGTTTTGGGCGGGCCCGGTGCGGGCAAGGGGACCCAGTGCGCGCGCATTGTCGAGAGTGATA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000129317.2 |
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| CDS CAA 72 bp | ATATCACTCTCGACAATGCGCGCGCACTGGGTCCCCTaGCCCGCACCGGGCCCGCCCAAAACGAACACGACC | + |
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Preference number: 6 (lower is better) Translates to: ISLSTMRAHWVP*PAPGPPKTNTT Trigger: GGTCGTGTTCGTTTTGGGCGGGCCCGGTGCGGGCAAGGGGACCCAGTGCGCGCGCATTGTCGAGAGTGATAT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000129317.2 |
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| CDS TCA 72 bp | CGGGCCCGCCCAAAACGAACACGACCAACGGCTTCATaGGGTGGAGAGGGAAGAGCCGCAGTGTGCGGGTCA | + |
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Preference number: 6 (lower is better) Translates to: RARPKRTRPTAS*GGEGRAAVCGS Trigger: TGACCCGCACACTGCGGCTCTTCCCTCTCCACCTCATGAAGCCGTTGGTCGTGTTCGTTTTGGGCGGGCCCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030491.9 ENSMUST00000133066.2 |
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| CDS CCA 72 bp | AATGGGAATATATCACTCTCGACAATGCGCGCGCACTaGGTCCCCTTGCCCGCACCGGGCCCGCCCAAAACG | + |
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Preference number: 6 (lower is better) Translates to: NGNISLSTMRAH*VPLPAPGPPKT Trigger: CGTTTTGGGCGGGCCCGGTGCGGGCAAGGGGACCCAGTGCGCGCGCATTGTCGAGAGTGATATATTCCCATT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000129317.2 |
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| CDS CAA 90 bp | AATGGGAATATATCACTCTCGACAATGCGCGCGCACTGGGTCCCCTaGCCCGCACCGGGCCCGCCCAAAACGAACACGACCAACGGCTTC | + |
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Preference number: 6 (lower is better) Translates to: NGNISLSTMRAHWVP*PAPGPPKTNTTNGF Trigger: GAAGCCGTTGGTCGTGTTCGTTTTGGGCGGGCCCGGTGCGGGCAAGGGGACCCAGTGCGCGCGCATTGTCGAGAGTGATATATTCCCATT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000129317.2 |
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