Pregenerated sensors for CMC4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000090110Ensembl transcript IDs: ENSMUST00000033543.14, ENSMUST00000120286.2, ENSMUST00000149863.3
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | CTTACAATTGACTTTTTAATTTGCTGTTTGCTGCTACCTAGATTGAAGGAGGGATACGAAGTTCTTGGATaGCAGCCTGACACTTCGATT | + |
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Preference number: 4 (lower is better) Translates to: LTIDFLICCLLLPRLKEGYEVLG*QPDTSI Trigger: AATCGAAGTGTCAGGCTGTCATCCAAGAACTTCGTA...TCCCTCCTTCAATCTAGGTAGCAGCAAACAGCAAATTAAAAAGTCAATTGTAAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033543.14 |
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| CDS-3UTR GCA 90 bp | CTTACAATTGACTTTTTAATTTGCTGTTTGCTGCTACCTAGATTGAAGGAGGGAGGATCCAGACTTCATTaGCAACTTCTCTTCCTCTTC | + |
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Preference number: 4 (lower is better) Translates to: LTIDFLICCLLLPRLKEGGSRLH*QLLFLF Trigger: GAAGAGGAAGAGAAGTTGGCAATGAAGTCTGGATCC...TCCCTCCTTCAATCTAGGTAGCAGCAAACAGCAAATTAAAAAGTCAATTGTAAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033543.14 |
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| CDS-3UTR TCA 90 bp | CTTACAATTGACTTTTTAATTTGCTGTTTGCTGCTACCTAGATTGAAGGAGGGATTCTTTCTCAAATCCTaGGCAGACAAGAGATCTTCC | + |
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Preference number: 4 (lower is better) Translates to: LTIDFLICCLLLPRLKEGFFLKS*ADKRSS Trigger: GGAAGATCTCTTGTCTGCTCAGGATTTGAGAAAGAA...TCCCTCCTTCAATCTAGGTAGCAGCAAACAGCAAATTAAAAAGTCAATTGTAAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033543.14 |
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| CDS-3UTR CCA 90 bp | CTTACAATTGACTTTTTAATTTGCTGTTTGCTGCTACCTAGATTGAAGGAGGGACAAGAGATCTTCCTTTaGGATATCGAGCACAACACT | + |
|
Preference number: 4 (lower is better) Translates to: LTIDFLICCLLLPRLKEGQEIFL*DIEHNT Trigger: AGTGTTGTGCTCGATATCCCAAAGGAAGATCTCTTG...TCCCTCCTTCAATCTAGGTAGCAGCAAACAGCAAATTAAAAAGTCAATTGTAAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033543.14 |
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| CDS TCA 90 bp | TCCAGACTTCATTGCCAACTTCTCTTCCTCTTCTTTCTCAAATCCTaGGCAGACAAGAGATCTTCCTTTGGGATATCGAGCACAACACTT | + |
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Preference number: 5 (lower is better) Translates to: SRLHCQLLFLFFLKS*ADKRSSFGISSTTL Trigger: AAGTGTTGTGCTCGATATCCCAAAGGAAGATCTCTTGTCTGCTCAGGATTTGAGAAAGAAGAGGAAGAGAAGTTGGCAATGAAGTCTGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000033543.14 ENSMUST00000120286.2 ENSMUST00000149863.3 |
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| CDS TCA 90 bp | ATCTTCCTTTGGGATATCGAGCACAACACTTACGAAGTTCTTGGATaGCAGCCTGACACTTCGATTCCAAATAGTTGTTGGCTTGTAAAC | + |
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Preference number: 5 (lower is better) Translates to: IFLWDIEHNTYEVLG*QPDTSIPNSCWLVN Trigger: GTTTACAAGCCAACAACTATTTGGAATCGAAGTGTCAGGCTGTCATCCAAGAACTTCGTAAGTGTTGTGCTCGATATCCCAAAGGAAGAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000033543.14 ENSMUST00000120286.2 ENSMUST00000149863.3 |
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| CDS-3UTR CAA 90 bp | CTTACAATTGACTTTTTAATTTGCTGTTTGCTGCTACCTAGATTGAAGGAGGGAACACTTACGAAGTTCTaGGATGACAGCCTGACACTT | + |
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Preference number: 5 (lower is better) Translates to: LTIDFLICCLLLPRLKEGTLTKF*DDSLTL Trigger: AAGTGTCAGGCTGTCATCCAAGAACTTCGTAAGTGT...TCCCTCCTTCAATCTAGGTAGCAGCAAACAGCAAATTAAAAAGTCAATTGTAAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033543.14 |
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| CDS-3UTR CAA 90 bp | CTTACAATTGACTTTTTAATTTGCTGTTTGCTGCTACCTAGATTGAAGGAGGGAACAAGAGATCTTCCTTaGGGATATCGAGCACAACAC | + |
|
Preference number: 5 (lower is better) Translates to: LTIDFLICCLLLPRLKEGTRDLP*GYRAQH Trigger: GTGTTGTGCTCGATATCCCAAAGGAAGATCTCTTGT...TCCCTCCTTCAATCTAGGTAGCAGCAAACAGCAAATTAAAAAGTCAATTGTAAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033543.14 |
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| CDS-3UTR CAA 90 bp | CTTACAATTGACTTTTTAATTTGCTGTTTGCTGCTACCTAGATTGAAGGAGGGATGGATCCAGACTTCATaGCCAACTTCTCTTCCTCTT | + |
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Preference number: 5 (lower is better) Translates to: LTIDFLICCLLLPRLKEGWIQTS*PTSLPL Trigger: AAGAGGAAGAGAAGTTGGCAATGAAGTCTGGATCCA...TCCCTCCTTCAATCTAGGTAGCAGCAAACAGCAAATTAAAAAGTCAATTGTAAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033543.14 |
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| CDS CAA 90 bp | TCTTCCTCTTCTTTCTCAAATCCTGAGCAGACAAGAGATCTTCCTTaGGGATATCGAGCACAACACTTACGAAGTTCTTGGATGACAGCC | + |
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Preference number: 6 (lower is better) Translates to: SSSSFSNPEQTRDLP*GYRAQHLRSSWMTA Trigger: GGCTGTCATCCAAGAACTTCGTAAGTGTTGTGCTCGATATCCCAAAGGAAGATCTCTTGTCTGCTCAGGATTTGAGAAAGAAGAGGAAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000033543.14 ENSMUST00000120286.2 ENSMUST00000149863.3 |
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| CDS TCA 72 bp | TGGGATATCGAGCACAACACTTACGAAGTTCTTGGATaGCAGCCTGACACTTCGATTCCAAATAGTTGTTGG | + |
|
Preference number: 6 (lower is better) Translates to: WDIEHNTYEVLG*QPDTSIPNSCW Trigger: CCAACAACTATTTGGAATCGAAGTGTCAGGCTGTCATCCAAGAACTTCGTAAGTGTTGTGCTCGATATCCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000033543.14 ENSMUST00000120286.2 ENSMUST00000149863.3 |
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| CDS CAA 90 bp | AAGAGATCTTCCTTTGGGATATCGAGCACAACACTTACGAAGTTCTaGGATGACAGCCTGACACTTCGATTCCAAATAGTTGTTGGCTTG | + |
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Preference number: 6 (lower is better) Translates to: KRSSFGISSTTLTKF*DDSLTLRFQIVVGL Trigger: CAAGCCAACAACTATTTGGAATCGAAGTGTCAGGCTGTCATCCAAGAACTTCGTAAGTGTTGTGCTCGATATCCCAAAGGAAGATCTCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000033543.14 ENSMUST00000120286.2 ENSMUST00000149863.3 |
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| CDS CCA 72 bp | CTTTCTCAAATCCTGAGCAGACAAGAGATCTTCCTTTaGGATATCGAGCACAACACTTACGAAGTTCTTGGA | + |
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Preference number: 6 (lower is better) Translates to: LSQILSRQEIFL*DIEHNTYEVLG Trigger: TCCAAGAACTTCGTAAGTGTTGTGCTCGATATCCCAAAGGAAGATCTCTTGTCTGCTCAGGATTTGAGAAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000033543.14 ENSMUST00000120286.2 ENSMUST00000149863.3 |
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| CDS CAA 72 bp | TCCTTTGGGATATCGAGCACAACACTTACGAAGTTCTaGGATGACAGCCTGACACTTCGATTCCAAATAGTT | + |
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Preference number: 6 (lower is better) Translates to: SFGISSTTLTKF*DDSLTLRFQIV Trigger: AACTATTTGGAATCGAAGTGTCAGGCTGTCATCCAAGAACTTCGTAAGTGTTGTGCTCGATATCCCAAAGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000033543.14 ENSMUST00000120286.2 ENSMUST00000149863.3 |
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| CDS CAA 72 bp | TCTTTCTCAAATCCTGAGCAGACAAGAGATCTTCCTTaGGGATATCGAGCACAACACTTACGAAGTTCTTGG | + |
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Preference number: 6 (lower is better) Translates to: SFSNPEQTRDLP*GYRAQHLRSSW Trigger: CCAAGAACTTCGTAAGTGTTGTGCTCGATATCCCAAAGGAAGATCTCTTGTCTGCTCAGGATTTGAGAAAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000033543.14 ENSMUST00000120286.2 ENSMUST00000149863.3 |
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