RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CMC4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000090110

Ensembl transcript IDs: ENSMUST00000033543.14, ENSMUST00000120286.2, ENSMUST00000149863.3

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR TCA 90 bp CTTACAATTGACTTTTTAATTTGCTGTTTGCTGCTACCTAGATTGAAGGAGGGATACGAAGTTCTTGGATaGCAGCCTGACACTTCGATT +
Preference number: 4 (lower is better)
Translates to: LTIDFLICCLLLPRLKEGYEVLG*QPDTSI
Trigger: AATCGAAGTGTCAGGCTGTCATCCAAGAACTTCGTA...TCCCTCCTTCAATCTAGGTAGCAGCAAACAGCAAATTAAAAAGTCAATTGTAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033543.14
CDS-3UTR GCA 90 bp CTTACAATTGACTTTTTAATTTGCTGTTTGCTGCTACCTAGATTGAAGGAGGGAGGATCCAGACTTCATTaGCAACTTCTCTTCCTCTTC +
Preference number: 4 (lower is better)
Translates to: LTIDFLICCLLLPRLKEGGSRLH*QLLFLF
Trigger: GAAGAGGAAGAGAAGTTGGCAATGAAGTCTGGATCC...TCCCTCCTTCAATCTAGGTAGCAGCAAACAGCAAATTAAAAAGTCAATTGTAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033543.14
CDS-3UTR TCA 90 bp CTTACAATTGACTTTTTAATTTGCTGTTTGCTGCTACCTAGATTGAAGGAGGGATTCTTTCTCAAATCCTaGGCAGACAAGAGATCTTCC +
Preference number: 4 (lower is better)
Translates to: LTIDFLICCLLLPRLKEGFFLKS*ADKRSS
Trigger: GGAAGATCTCTTGTCTGCTCAGGATTTGAGAAAGAA...TCCCTCCTTCAATCTAGGTAGCAGCAAACAGCAAATTAAAAAGTCAATTGTAAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033543.14
CDS-3UTR CCA 90 bp CTTACAATTGACTTTTTAATTTGCTGTTTGCTGCTACCTAGATTGAAGGAGGGACAAGAGATCTTCCTTTaGGATATCGAGCACAACACT +
Preference number: 4 (lower is better)
Translates to: LTIDFLICCLLLPRLKEGQEIFL*DIEHNT
Trigger: AGTGTTGTGCTCGATATCCCAAAGGAAGATCTCTTG...TCCCTCCTTCAATCTAGGTAGCAGCAAACAGCAAATTAAAAAGTCAATTGTAAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033543.14
CDS TCA 90 bp TCCAGACTTCATTGCCAACTTCTCTTCCTCTTCTTTCTCAAATCCTaGGCAGACAAGAGATCTTCCTTTGGGATATCGAGCACAACACTT +
Preference number: 5 (lower is better)
Translates to: SRLHCQLLFLFFLKS*ADKRSSFGISSTTL
Trigger: AAGTGTTGTGCTCGATATCCCAAAGGAAGATCTCTTGTCTGCTCAGGATTTGAGAAAGAAGAGGAAGAGAAGTTGGCAATGAAGTCTGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033543.14
ENSMUST00000120286.2
ENSMUST00000149863.3
CDS TCA 90 bp ATCTTCCTTTGGGATATCGAGCACAACACTTACGAAGTTCTTGGATaGCAGCCTGACACTTCGATTCCAAATAGTTGTTGGCTTGTAAAC +
Preference number: 5 (lower is better)
Translates to: IFLWDIEHNTYEVLG*QPDTSIPNSCWLVN
Trigger: GTTTACAAGCCAACAACTATTTGGAATCGAAGTGTCAGGCTGTCATCCAAGAACTTCGTAAGTGTTGTGCTCGATATCCCAAAGGAAGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033543.14
ENSMUST00000120286.2
ENSMUST00000149863.3
CDS-3UTR CAA 90 bp CTTACAATTGACTTTTTAATTTGCTGTTTGCTGCTACCTAGATTGAAGGAGGGAACACTTACGAAGTTCTaGGATGACAGCCTGACACTT +
Preference number: 5 (lower is better)
Translates to: LTIDFLICCLLLPRLKEGTLTKF*DDSLTL
Trigger: AAGTGTCAGGCTGTCATCCAAGAACTTCGTAAGTGT...TCCCTCCTTCAATCTAGGTAGCAGCAAACAGCAAATTAAAAAGTCAATTGTAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033543.14
CDS-3UTR CAA 90 bp CTTACAATTGACTTTTTAATTTGCTGTTTGCTGCTACCTAGATTGAAGGAGGGAACAAGAGATCTTCCTTaGGGATATCGAGCACAACAC +
Preference number: 5 (lower is better)
Translates to: LTIDFLICCLLLPRLKEGTRDLP*GYRAQH
Trigger: GTGTTGTGCTCGATATCCCAAAGGAAGATCTCTTGT...TCCCTCCTTCAATCTAGGTAGCAGCAAACAGCAAATTAAAAAGTCAATTGTAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033543.14
CDS-3UTR CAA 90 bp CTTACAATTGACTTTTTAATTTGCTGTTTGCTGCTACCTAGATTGAAGGAGGGATGGATCCAGACTTCATaGCCAACTTCTCTTCCTCTT +
Preference number: 5 (lower is better)
Translates to: LTIDFLICCLLLPRLKEGWIQTS*PTSLPL
Trigger: AAGAGGAAGAGAAGTTGGCAATGAAGTCTGGATCCA...TCCCTCCTTCAATCTAGGTAGCAGCAAACAGCAAATTAAAAAGTCAATTGTAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033543.14
CDS CAA 90 bp TCTTCCTCTTCTTTCTCAAATCCTGAGCAGACAAGAGATCTTCCTTaGGGATATCGAGCACAACACTTACGAAGTTCTTGGATGACAGCC +
Preference number: 6 (lower is better)
Translates to: SSSSFSNPEQTRDLP*GYRAQHLRSSWMTA
Trigger: GGCTGTCATCCAAGAACTTCGTAAGTGTTGTGCTCGATATCCCAAAGGAAGATCTCTTGTCTGCTCAGGATTTGAGAAAGAAGAGGAAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033543.14
ENSMUST00000120286.2
ENSMUST00000149863.3
CDS TCA 72 bp TGGGATATCGAGCACAACACTTACGAAGTTCTTGGATaGCAGCCTGACACTTCGATTCCAAATAGTTGTTGG +
Preference number: 6 (lower is better)
Translates to: WDIEHNTYEVLG*QPDTSIPNSCW
Trigger: CCAACAACTATTTGGAATCGAAGTGTCAGGCTGTCATCCAAGAACTTCGTAAGTGTTGTGCTCGATATCCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033543.14
ENSMUST00000120286.2
ENSMUST00000149863.3
CDS CAA 90 bp AAGAGATCTTCCTTTGGGATATCGAGCACAACACTTACGAAGTTCTaGGATGACAGCCTGACACTTCGATTCCAAATAGTTGTTGGCTTG +
Preference number: 6 (lower is better)
Translates to: KRSSFGISSTTLTKF*DDSLTLRFQIVVGL
Trigger: CAAGCCAACAACTATTTGGAATCGAAGTGTCAGGCTGTCATCCAAGAACTTCGTAAGTGTTGTGCTCGATATCCCAAAGGAAGATCTCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033543.14
ENSMUST00000120286.2
ENSMUST00000149863.3
CDS CCA 72 bp CTTTCTCAAATCCTGAGCAGACAAGAGATCTTCCTTTaGGATATCGAGCACAACACTTACGAAGTTCTTGGA +
Preference number: 6 (lower is better)
Translates to: LSQILSRQEIFL*DIEHNTYEVLG
Trigger: TCCAAGAACTTCGTAAGTGTTGTGCTCGATATCCCAAAGGAAGATCTCTTGTCTGCTCAGGATTTGAGAAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033543.14
ENSMUST00000120286.2
ENSMUST00000149863.3
CDS CAA 72 bp TCCTTTGGGATATCGAGCACAACACTTACGAAGTTCTaGGATGACAGCCTGACACTTCGATTCCAAATAGTT +
Preference number: 6 (lower is better)
Translates to: SFGISSTTLTKF*DDSLTLRFQIV
Trigger: AACTATTTGGAATCGAAGTGTCAGGCTGTCATCCAAGAACTTCGTAAGTGTTGTGCTCGATATCCCAAAGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033543.14
ENSMUST00000120286.2
ENSMUST00000149863.3
CDS CAA 72 bp TCTTTCTCAAATCCTGAGCAGACAAGAGATCTTCCTTaGGGATATCGAGCACAACACTTACGAAGTTCTTGG +
Preference number: 6 (lower is better)
Translates to: SFSNPEQTRDLP*GYRAQHLRSSW
Trigger: CCAAGAACTTCGTAAGTGTTGTGCTCGATATCCCAAAGGAAGATCTCTTGTCTGCTCAGGATTTGAGAAAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033543.14
ENSMUST00000120286.2
ENSMUST00000149863.3