Pregenerated sensors for CMC2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000014633Ensembl transcript IDs: ENSMUST00000078589.7, ENSMUST00000128304.2, ENSMUST00000131616.8, ENSMUST00000148235.8, ENSMUST00000150128.8
Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGTCTCCCAGCCGAGGCGCCAGTGAGCCTATCTCCCAGCTTCCTCTaGAGGGTCAGAAAGCCTCCGTCGCATGGCGGCGCCGTGCTCCCT | + |
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Preference number: 1 (lower is better) Translates to: GLPAEAPVSLSPSFL*RVRKPPSHGGAVLP Trigger: AGGGAGCACGGCGCCGCCATGCGACGGAGGCTTTCTGACCCTCCAGAGGAAGCTGGGAGATAGGCTCACTGGCGCCTCGGCTGGGAGACC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000131616.8 ENSMUST00000150128.8 |
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| 3UTR CCA 90 bp | GGCCCACGCTGTCCAGTGACTTTATTGCAGGAGGCGAGTCAGGACTaGGTGGATGCAGATTCAGGGCAGCAGCAGAGGAAACTCTCCCTG | + |
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Preference number: 1 (lower is better) Translates to: GPRCPVTLLQEASQD*VDADSGQQQRKLSL Trigger: CAGGGAGAGTTTCCTCTGCTGCTGCCCTGAATCTGCATCCACCCAGTCCTGACTCGCCTCCTGCAATAAAGTCACTGGACAGCGTGGGCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000131616.8 ENSMUST00000148235.8 |
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| 3UTR CCA 90 bp | ACTGGGTGGATGCAGATTCAGGGCAGCAGCAGAGGAAACTCTCCCTaGCACAGCGCGTGGCACTCAAGTTCAGCAGGTACTGAGAAGCCA | + |
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Preference number: 1 (lower is better) Translates to: TGWMQIQGSSRGNSP*HSAWHSSSAGTEKP Trigger: TGGCTTCTCAGTACCTGCTGAACTTGAGTGCCACGCGCTGTGCCAGGGAGAGTTTCCTCTGCTGCTGCCCTGAATCTGCATCCACCCAGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000078589.7 ENSMUST00000131616.8 ENSMUST00000148235.8 ENSMUST00000150128.8 |
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| 3UTR GCA 90 bp | TCCCGGTCGAGGTCGTTGCAATGGCCGAAAAACTTCAGAATGTTGTaGTGCGCATGTGCCGAGGGTGGTTCTCCACTCCATGTGCTCTGC | + |
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Preference number: 1 (lower is better) Translates to: SRSRSLQWPKNFRML*CACAEGGSPLHVLC Trigger: GCAGAGCACATGGAGTGGAGAACCACCCTCGGCACATGCGCAGCACAACATTCTGAAGTTTTTCGGCCATTGCAACGACCTCGACCGGGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000150128.8 |
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| 3UTR GCA 90 bp | CGGTCGAGGTCGTTGCAATGGCCGAAAAACTTCAGAATGTTGTGCTaGGCATGTGCCGAGGGTGGTTCTCCACTCCATGTGCTCTGCCTT | + |
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Preference number: 1 (lower is better) Translates to: RSRSLQWPKNFRMLC*ACAEGGSPLHVLCL Trigger: AAGGCAGAGCACATGGAGTGGAGAACCACCCTCGGCACATGCGCAGCACAACATTCTGAAGTTTTTCGGCCATTGCAACGACCTCGACCG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000150128.8 |
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| 3UTR GCA 90 bp | CTGCTGGAAGGGCCCTGGAATTCCCACGTTGGTTTGTGTCTTCACTaGACAACCTTCAACCGCCATGTTCTCAGACAGAGGAACCCACAG | + |
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Preference number: 1 (lower is better) Translates to: LLEGPWNSHVGLCLH*TTFNRHVLRQRNPQ Trigger: CTGTGGGTTCCTCTGTCTGAGAACATGGCGGTTGAAGGTTGTGCAGTGAAGACACAAACCAACGTGGGAATTCCAGGGCCCTTCCAGCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000131616.8 ENSMUST00000148235.8 |
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| 3UTR CCA 90 bp | TTTGGTATGGTTGGCTCTGCTGGAAGGGCCCTGGAATTCCCACGTTaGTTTGTGTCTTCACTGCACAACCTTCAACCGCCATGTTCTCAG | + |
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Preference number: 1 (lower is better) Translates to: FGMVGSAGRALEFPR*FVSSLHNLQPPCSQ Trigger: CTGAGAACATGGCGGTTGAAGGTTGTGCAGTGAAGACACAAACCAACGTGGGAATTCCAGGGCCCTTCCAGCAGAGCCAACCATACCAAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000131616.8 ENSMUST00000148235.8 |
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| 3UTR CCA 90 bp | TCATTCTTCAAACACTTCCTCATTTCCCGGTCGAGGTCGTTGCAATaGCCGAAAAACTTCAGAATGTTGTGCTGCGCATGTGCCGAGGGT | + |
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Preference number: 1 (lower is better) Translates to: SFFKHFLISRSRSLQ*PKNFRMLCCACAEG Trigger: ACCCTCGGCACATGCGCAGCACAACATTCTGAAGTTTTTCGGCCATTGCAACGACCTCGACCGGGAAATGAGGAAGTGTTTGAAGAATGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000150128.8 |
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| 3UTR CCA 90 bp | ATAAAACAGGGAACTTTGGTATGGTTGGCTCTGCTGGAAGGGCCCTaGAATTCCCACGTTGGTTTGTGTCTTCACTGCACAACCTTCAAC | + |
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Preference number: 1 (lower is better) Translates to: IKQGTLVWLALLEGP*NSHVGLCLHCTTFN Trigger: GTTGAAGGTTGTGCAGTGAAGACACAAACCAACGTGGGAATTCCAGGGCCCTTCCAGCAGAGCCAACCATACCAAAGTTCCCTGTTTTAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000131616.8 ENSMUST00000148235.8 |
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| 3UTR TCA 90 bp | AGCGCGTGGCACTCAAGTTCAGCAGGTACTGAGAAGCCATTCTCCTaGTTCCCTATGGTTCCGTTCTTCAGAGCACTTTTCATACAAAGA | + |
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Preference number: 1 (lower is better) Translates to: SAWHSSSAGTEKPFS*FPMVPFFRALFIQR Trigger: TCTTTGTATGAAAAGTGCTCTGAAGAACGGAACCATAGGGAATCAGGAGAATGGCTTCTCAGTACCTGCTGAACTTGAGTGCCACGCGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000078589.7 ENSMUST00000131616.8 ENSMUST00000148235.8 ENSMUST00000150128.8 |
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| 3UTR-3UTR GCA 90 bp | ATAAGAAAGGATATTCTTCGGCCACCAGCCACCTTCAGGTCTCCCAGCCGAGGCCGCATGGCGGCGCCGTaGTCCCTGCTCCTGGTCCTC | + |
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Preference number: 2 (lower is better) Translates to: IRKDILRPPATFRSPSRGRMAAP*SLLLVL Trigger: GAGGACCAGGAGCAGGGAGCACGGCGCCGCCATGCG...GCCTCGGCTGGGAGACCTGAAGGTGGCTGGTGGCCGAAGAATATCCTTTCTTAT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000131616.8 ENSMUST00000150128.8 |
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| 3UTR-3UTR GCA 90 bp | GGTGGATGCAGATTCAGGGCAGCAGCAGAGGAAACTCTCCCTGGCACAGCGCGTGTTCTCCACTCCATGTaGTCTGCCTTCCCCGTGACG | + |
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Preference number: 2 (lower is better) Translates to: GGCRFRAAAEETLPGTARVLHSM*SAFPVT Trigger: CGTCACGGGGAAGGCAGAGCACATGGAGTGGAGAAC...ACGCGCTGTGCCAGGGAGAGTTTCCTCTGCTGCTGCCCTGAATCTGCATCCACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150128.8 |
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| 3UTR-3UTR GCA 90 bp | TTGCAATGGCCGAAAAACTTCAGAATGTTGTGCTGCGCATGTGCCGAGGGTGGTCGGCGCCGTGCTCCCTaGTCCTGGTCCTCCTCTCTG | + |
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Preference number: 2 (lower is better) Translates to: LQWPKNFRMLCCACAEGGRRRAP*SWSSSL Trigger: CAGAGAGGAGGACCAGGAGCAGGGAGCACGGCGCCG...ACCACCCTCGGCACATGCGCAGCACAACATTCTGAAGTTTTTCGGCCATTGCAA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000150128.8 |
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| 3UTR-3UTR CCA 90 bp | AGATTCAGGGCAGCAGCAGAGGAAACTCTCCCTGGCACAGCGCGTGGCACTCAACGCATGTGCCGAGGGTaGTTCTCCACTCCATGTGCT | + |
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Preference number: 2 (lower is better) Translates to: RFRAAAEETLPGTARGTQRMCRG*FSTPCA Trigger: AGCACATGGAGTGGAGAACCACCCTCGGCACATGCG...TTGAGTGCCACGCGCTGTGCCAGGGAGAGTTTCCTCTGCTGCTGCCCTGAATCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150128.8 |
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| 3UTR-3UTR GCA 90 bp | GTTCAGCAGGTACTGAGAAGCCATTCTCCTGATTCCCTATGGTTCCGTTCTTCACGGCGCCGTGCTCCCTaGTCCTGGTCCTCCTCTCTG | + |
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Preference number: 2 (lower is better) Translates to: VQQVLRSHSPDSLWFRSSRRRAP*SWSSSL Trigger: CAGAGAGGAGGACCAGGAGCAGGGAGCACGGCGCCG...TGAAGAACGGAACCATAGGGAATCAGGAGAATGGCTTCTCAGTACCTGCTGAAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000131616.8 ENSMUST00000150128.8 |
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| 3UTR-3UTR CCA 90 bp | ATAAGAAAGGATATTCTTCGGCCACCAGCCACCTTCAGGTCTCCCAGCCGAGGCTCTCCCAGCTTCCTCTaGAGGGTCAGAAAGCCTCCG | + |
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Preference number: 2 (lower is better) Translates to: IRKDILRPPATFRSPSRGSPSFL*RVRKPP Trigger: CGGAGGCTTTCTGACCCTCCAGAGGAAGCTGGGAGA...GCCTCGGCTGGGAGACCTGAAGGTGGCTGGTGGCCGAAGAATATCCTTTCTTAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000131616.8 ENSMUST00000150128.8 |
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| 3UTR-3UTR GCA 90 bp | AGGTCGTTGCAATGGCCGAAAAACTTCAGAATGTTGTGCTGCGCATGTGCCGAGCCACTCCATGTGCTCTaGCTTCCCCGTGACGTCAAC | + |
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Preference number: 2 (lower is better) Translates to: RSLQWPKNFRMLCCACAEPLHVL*LPRDVN Trigger: GTTGACGTCACGGGGAAGGCAGAGCACATGGAGTGG...CTCGGCACATGCGCAGCACAACATTCTGAAGTTTTTCGGCCATTGCAACGACCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000150128.8 |
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| 3UTR-3UTR GCA 90 bp | CGCTGTCCAGTGACTTTATTGCAGGAGGCGAGTCAGGACTGGGTGGATGCAGATTTCAGAATGTTGTGCTaGGCATGTGCCGAGGGTGGT | + |
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Preference number: 2 (lower is better) Translates to: RCPVTLLQEASQDWVDADFRMLC*ACAEGG Trigger: ACCACCCTCGGCACATGCGCAGCACAACATTCTGAA...ATCTGCATCCACCCAGTCCTGACTCGCCTCCTGCAATAAAGTCACTGGACAGCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150128.8 |
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| 3UTR-3UTR GCA 90 bp | CGTGGCACTCAAGTTCAGCAGGTACTGAGAAGCCATTCTCCTGATTCCCTATGGTCAGGACTGGGTGGATaGAGATTCAGGGCAGCAGCA | + |
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Preference number: 2 (lower is better) Translates to: RGTQVQQVLRSHSPDSLWSGLGG*RFRAAA Trigger: TGCTGCTGCCCTGAATCTGCATCCACCCAGTCCTGA...CCATAGGGAATCAGGAGAATGGCTTCTCAGTACCTGCTGAACTTGAGTGCCACG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000078589.7 ENSMUST00000131616.8 ENSMUST00000148235.8 ENSMUST00000150128.8 |
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| 3UTR-3UTR CCA 90 bp | CGTTGGTTTGTGTCTTCACTGCACAACCTTCAACCGCCATGTTCTCAGACAGAGAGAGGAAACTCTCCCTaGCACAGCGCGTGGCACTCA | + |
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Preference number: 2 (lower is better) Translates to: RWFVSSLHNLQPPCSQTERGNSP*HSAWHS Trigger: TGAGTGCCACGCGCTGTGCCAGGGAGAGTTTCCTCT...CTCTGTCTGAGAACATGGCGGTTGAAGGTTGTGCAGTGAAGACACAAACCAACG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000131616.8 ENSMUST00000148235.8 |
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| 3UTR-3UTR TCA 90 bp | TCCAGTGACTTTATTGCAGGAGGCGAGTCAGGACTGGGTGGATGCAGATTCAGGGAGAAGCCATTCTCCTaGTTCCCTATGGTTCCGTTC | + |
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Preference number: 2 (lower is better) Translates to: SSDFIAGGESGLGGCRFREKPFS*FPMVPF Trigger: GAACGGAACCATAGGGAATCAGGAGAATGGCTTCTC...CCTGAATCTGCATCCACCCAGTCCTGACTCGCCTCCTGCAATAAAGTCACTGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000131616.8 ENSMUST00000148235.8 ENSMUST00000150128.8 |
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| 3UTR-3UTR CCA 90 bp | GTTCAGCAGGTACTGAGAAGCCATTCTCCTGATTCCCTATGGTTCCGTTCTTCAAGAGGAAACTCTCCCTaGCACAGCGCGTGGCACTCA | + |
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Preference number: 2 (lower is better) Translates to: VQQVLRSHSPDSLWFRSSRGNSP*HSAWHS Trigger: TGAGTGCCACGCGCTGTGCCAGGGAGAGTTTCCTCT...TGAAGAACGGAACCATAGGGAATCAGGAGAATGGCTTCTCAGTACCTGCTGAAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000078589.7 ENSMUST00000131616.8 ENSMUST00000148235.8 ENSMUST00000150128.8 |
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| 3UTR-3UTR GCA 90 bp | GTTCAGCAGGTACTGAGAAGCCATTCTCCTGATTCCCTATGGTTCCGTTCTTCATCAGGACTGGGTGGATaGAGATTCAGGGCAGCAGCA | + |
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Preference number: 2 (lower is better) Translates to: VQQVLRSHSPDSLWFRSSSGLGG*RFRAAA Trigger: TGCTGCTGCCCTGAATCTGCATCCACCCAGTCCTGA...TGAAGAACGGAACCATAGGGAATCAGGAGAATGGCTTCTCAGTACCTGCTGAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000078589.7 ENSMUST00000131616.8 ENSMUST00000148235.8 ENSMUST00000150128.8 |
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| 3UTR CCA 72 bp | GCCGAGGCGCCAGTGAGCCTATCTCCCAGCTTCCTCTaGAGGGTCAGAAAGCCTCCGTCGCATGGCGGCGCC | + |
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Preference number: 3 (lower is better) Translates to: AEAPVSLSPSFL*RVRKPPSHGGA Trigger: GGCGCCGCCATGCGACGGAGGCTTTCTGACCCTCCAGAGGAAGCTGGGAGATAGGCTCACTGGCGCCTCGGC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000131616.8 ENSMUST00000150128.8 |
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| 3UTR GCA 72 bp | GGAGGGTCAGAAAGCCTCCGTCGCATGGCGGCGCCGTaGTCCCTGCTCCTGGTCCTCCTCTCTGAGTACTCA | + |
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Preference number: 3 (lower is better) Translates to: GGSESLRRMAAP*SLLLVLLSEYS Trigger: TGAGTACTCAGAGAGGAGGACCAGGAGCAGGGAGCACGGCGCCGCCATGCGACGGAGGCTTTCTGACCCTCC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000131616.8 ENSMUST00000150128.8 |
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| 3UTR TCA 72 bp | ACCAGCCACCTTCAGGTCTCCCAGCCGAGGCGCCAGTaGGCCTATCTCCCAGCTTCCTCTGGAGGGTCAGAA | + |
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Preference number: 3 (lower is better) Translates to: TSHLQVSQPRRQ*AYLPASSGGSE Trigger: TTCTGACCCTCCAGAGGAAGCTGGGAGATAGGCTCACTGGCGCCTCGGCTGGGAGACCTGAAGGTGGCTGGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000131616.8 ENSMUST00000150128.8 |
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| 3UTR GCA 72 bp | CAGAAAGCCTCCGTCGCATGGCGGCGCCGTGCTCCCTaGTCCTGGTCCTCCTCTCTGAGTACTCATTCTTCA | + |
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Preference number: 3 (lower is better) Translates to: QKASVAWRRRAP*SWSSSLSTHSS Trigger: TGAAGAATGAGTACTCAGAGAGGAGGACCAGGAGCAGGGAGCACGGCGCCGCCATGCGACGGAGGCTTTCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000131616.8 ENSMUST00000150128.8 |
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| 3UTR-3UTR CAA 90 bp | ATGCAGATTCAGGGCAGCAGCAGAGGAAACTCTCCCTGGCACAGCGCGTGGCACTGTCCAGTGACTTTATaGCAGGAGGCGAGTCAGGAC | + |
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Preference number: 3 (lower is better) Translates to: MQIQGSSRGNSPWHSAWHCPVTL*QEASQD Trigger: GTCCTGACTCGCCTCCTGCAATAAAGTCACTGGACA...GTGCCACGCGCTGTGCCAGGGAGAGTTTCCTCTGCTGCTGCCCTGAATCTGCAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000131616.8 ENSMUST00000148235.8 ENSMUST00000150128.8 |
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| 3UTR CCA 72 bp | GGCAGCAGCAGAGGAAACTCTCCCTGGCACAGCGCGTaGCACTCAAGTTCAGCAGGTACTGAGAAGCCATTC | + |
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Preference number: 3 (lower is better) Translates to: GSSRGNSPWHSA*HSSSAGTEKPF Trigger: GAATGGCTTCTCAGTACCTGCTGAACTTGAGTGCCACGCGCTGTGCCAGGGAGAGTTTCCTCTGCTGCTGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000078589.7 ENSMUST00000131616.8 ENSMUST00000148235.8 ENSMUST00000150128.8 |
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| 3UTR CCA 72 bp | ATGCAGATTCAGGGCAGCAGCAGAGGAAACTCTCCCTaGCACAGCGCGTGGCACTCAAGTTCAGCAGGTACT | + |
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Preference number: 3 (lower is better) Translates to: MQIQGSSRGNSP*HSAWHSSSAGT Trigger: AGTACCTGCTGAACTTGAGTGCCACGCGCTGTGCCAGGGAGAGTTTCCTCTGCTGCTGCCCTGAATCTGCAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000078589.7 ENSMUST00000131616.8 ENSMUST00000148235.8 ENSMUST00000150128.8 |
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| 3UTR TCA 72 bp | GAAGAGGTTAAAGAAAGGGAGGCCCACGCTGTCCAGTaGCTTTATTGCAGGAGGCGAGTCAGGACTGGGTGG | + |
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Preference number: 3 (lower is better) Translates to: EEVKEREAHAVQ*LYCRRRVRTGW Trigger: CCACCCAGTCCTGACTCGCCTCCTGCAATAAAGTCACTGGACAGCGTGGGCCTCCCTTTCTTTAACCTCTTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000131616.8 ENSMUST00000148235.8 |
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| 3UTR GCA 72 bp | GACTTTATTGCAGGAGGCGAGTCAGGACTGGGTGGATaGAGATTCAGGGCAGCAGCAGAGGAAACTCTCCCT | + |
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Preference number: 3 (lower is better) Translates to: DFIAGGESGLGG*RFRAAAEETLP Trigger: AGGGAGAGTTTCCTCTGCTGCTGCCCTGAATCTGCATCCACCCAGTCCTGACTCGCCTCCTGCAATAAAGTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000131616.8 ENSMUST00000148235.8 ENSMUST00000150128.8 |
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| 3UTR TCA 72 bp | CTGGCACAGCGCGTGGCACTCAAGTTCAGCAGGTACTaGGAAGCCATTCTCCTGATTCCCTATGGTTCCGTT | + |
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Preference number: 3 (lower is better) Translates to: LAQRVALKFSRY*EAILLIPYGSV Trigger: AACGGAACCATAGGGAATCAGGAGAATGGCTTCTCAGTACCTGCTGAACTTGAGTGCCACGCGCTGTGCCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000078589.7 ENSMUST00000131616.8 ENSMUST00000148235.8 ENSMUST00000150128.8 |
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| 3UTR GCA 72 bp | GGGCCCTGGAATTCCCACGTTGGTTTGTGTCTTCACTaGACAACCTTCAACCGCCATGTTCTCAGACAGAGG | + |
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Preference number: 3 (lower is better) Translates to: GPWNSHVGLCLH*TTFNRHVLRQR Trigger: CCTCTGTCTGAGAACATGGCGGTTGAAGGTTGTGCAGTGAAGACACAAACCAACGTGGGAATTCCAGGGCCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000131616.8 ENSMUST00000148235.8 |
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| 3UTR GCA 72 bp | ATGGCCGAAAAACTTCAGAATGTTGTGCTGCGCATGTaGCGAGGGTGGTTCTCCACTCCATGTGCTCTGCCT | + |
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Preference number: 3 (lower is better) Translates to: MAEKLQNVVLRM*RGWFSTPCALP Trigger: AGGCAGAGCACATGGAGTGGAGAACCACCCTCGGCACATGCGCAGCACAACATTCTGAAGTTTTTCGGCCAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000150128.8 |
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| 3UTR CCA 72 bp | TGTCCAGTGACTTTATTGCAGGAGGCGAGTCAGGACTaGGTGGATGCAGATTCAGGGCAGCAGCAGAGGAAA | + |
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Preference number: 3 (lower is better) Translates to: CPVTLLQEASQD*VDADSGQQQRK Trigger: TTTCCTCTGCTGCTGCCCTGAATCTGCATCCACCCAGTCCTGACTCGCCTCCTGCAATAAAGTCACTGGACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000131616.8 ENSMUST00000148235.8 ENSMUST00000150128.8 |
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| 3UTR GCA 72 bp | TCGTTGCAATGGCCGAAAAACTTCAGAATGTTGTGCTaGGCATGTGCCGAGGGTGGTTCTCCACTCCATGTG | + |
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Preference number: 3 (lower is better) Translates to: SLQWPKNFRMLC*ACAEGGSPLHV Trigger: CACATGGAGTGGAGAACCACCCTCGGCACATGCGCAGCACAACATTCTGAAGTTTTTCGGCCATTGCAACGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000150128.8 |
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| 3UTR CCA 72 bp | AGGTCTCAGAAACCATGGGGAGTAGTATTTGTGAGGTaGGGATGGGGTGTGTGTGTGTGTACGTGTGTGAAC | + |
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Preference number: 3 (lower is better) Translates to: RSQKPWGVVFVR*GWGVCVCTCVN Trigger: GTTCACACACGTACACACACACACACCCCATCCCCACCTCACAAATACTACTCCCCATGGTTTCTGAGACCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148235.8 |
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| 3UTR CCA 72 bp | TGCTGGGTTTCTAACTGTCACAGGTCTCAGAAACCATaGGGAGTAGTATTTGTGAGGTGGGGATGGGGTGTG | + |
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Preference number: 3 (lower is better) Translates to: CWVSNCHRSQKP*GVVFVRWGWGV Trigger: CACACCCCATCCCCACCTCACAAATACTACTCCCCATGGTTTCTGAGACCTGTGACAGTTAGAAACCCAGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148235.8 |
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| 3UTR GCA 72 bp | TCTTCAAACACTTCCTCATTTCCCGGTCGAGGTCGTTaGAATGGCCGAAAAACTTCAGAATGTTGTGCTGCG | + |
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Preference number: 3 (lower is better) Translates to: SSNTSSFPGRGR*NGRKTSECCAA Trigger: CGCAGCACAACATTCTGAAGTTTTTCGGCCATTGCAACGACCTCGACCGGGAAATGAGGAAGTGTTTGAAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000150128.8 |
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| 3UTR CCA 72 bp | AAACACTTCCTCATTTCCCGGTCGAGGTCGTTGCAATaGCCGAAAAACTTCAGAATGTTGTGCTGCGCATGT | + |
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Preference number: 3 (lower is better) Translates to: KHFLISRSRSLQ*PKNFRMLCCAC Trigger: ACATGCGCAGCACAACATTCTGAAGTTTTTCGGCCATTGCAACGACCTCGACCGGGAAATGAGGAAGTGTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000150128.8 |
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| 3UTR TCA 72 bp | CACTCAAGTTCAGCAGGTACTGAGAAGCCATTCTCCTaGTTCCCTATGGTTCCGTTCTTCAGAGCACTTTTC | + |
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Preference number: 3 (lower is better) Translates to: HSSSAGTEKPFS*FPMVPFFRALF Trigger: GAAAAGTGCTCTGAAGAACGGAACCATAGGGAATCAGGAGAATGGCTTCTCAGTACCTGCTGAACTTGAGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000078589.7 ENSMUST00000131616.8 ENSMUST00000148235.8 ENSMUST00000150128.8 |
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| CDS-3UTR GCA 90 bp | GATATTCTTCGGCCACCAGCCACCTTCAGGTCTCCCAGCCGAGGCGCCAGTGAGCGCATGGCGGCGCCGTaGTCCCTGCTCCTGGTCCTC | + |
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Preference number: 4 (lower is better) Translates to: DILRPPATFRSPSRGASERMAAP*SLLLVL Trigger: GAGGACCAGGAGCAGGGAGCACGGCGCCGCCATGCG...CTCACTGGCGCCTCGGCTGGGAGACCTGAAGGTGGCTGGTGGCCGAAGAATATC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078589.7 ENSMUST00000148235.8 |
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| CDS-3UTR GCA 90 bp | CAGGTACTGAGAAGCCATTCTCCTGATTCCCTATGGTTCCGTTCTTCAGAGCACCGCATGGCGGCGCCGTaGTCCCTGCTCCTGGTCCTC | + |
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Preference number: 4 (lower is better) Translates to: QVLRSHSPDSLWFRSSEHRMAAP*SLLLVL Trigger: GAGGACCAGGAGCAGGGAGCACGGCGCCGCCATGCG...GTGCTCTGAAGAACGGAACCATAGGGAATCAGGAGAATGGCTTCTCAGTACCTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078589.7 ENSMUST00000148235.8 |
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| CDS-3UTR GCA 90 bp | CAGGTACTGAGAAGCCATTCTCCTGATTCCCTATGGTTCCGTTCTTCAGAGCACCGGCGCCGTGCTCCCTaGTCCTGGTCCTCCTCTCTG | + |
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Preference number: 4 (lower is better) Translates to: QVLRSHSPDSLWFRSSEHRRRAP*SWSSSL Trigger: CAGAGAGGAGGACCAGGAGCAGGGAGCACGGCGCCG...GTGCTCTGAAGAACGGAACCATAGGGAATCAGGAGAATGGCTTCTCAGTACCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078589.7 ENSMUST00000148235.8 |
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| CDS-3UTR GCA 90 bp | ACTCAAGTTCAGCAGGTACTGAGAAGCCATTCTCCTGATTCCCTATGGTTCCGTCGGCGCCGTGCTCCCTaGTCCTGGTCCTCCTCTCTG | + |
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Preference number: 4 (lower is better) Translates to: TQVQQVLRSHSPDSLWFRRRRAP*SWSSSL Trigger: CAGAGAGGAGGACCAGGAGCAGGGAGCACGGCGCCG...ACGGAACCATAGGGAATCAGGAGAATGGCTTCTCAGTACCTGCTGAACTTGAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078589.7 ENSMUST00000148235.8 |
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| CDS-3UTR CCA 90 bp | GGCCCTGGAATTCCCACGTTGGTTTGTGTCTTCACTGCACAACCTTCAACCGCCTCTCCCAGCTTCCTCTaGAGGGTCAGAAAGCCTCCG | + |
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Preference number: 4 (lower is better) Translates to: GPGIPTLVCVFTAQPSTASPSFL*RVRKPP Trigger: CGGAGGCTTTCTGACCCTCCAGAGGAAGCTGGGAGA...GGCGGTTGAAGGTTGTGCAGTGAAGACACAAACCAACGTGGGAATTCCAGGGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148235.8 |
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| CDS-3UTR TCA 90 bp | GGTGGATGCAGATTCAGGGCAGCAGCAGAGGAAACTCTCCCTGGCACAGCGCGTCCTGGTCCTCCTCTCTaGGTAATTTTTGTGACATTC | + |
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Preference number: 4 (lower is better) Translates to: GGCRFRAAAEETLPGTARPGPPL*VIFVTF Trigger: GAATGTCACAAAAATTACTCAGAGAGGAGGACCAGG...ACGCGCTGTGCCAGGGAGAGTTTCCTCTGCTGCTGCCCTGAATCTGCATCCACC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078589.7 |
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| 3UTR CAA 72 bp | TCGAGGTCGTTGCAATGGCCGAAAAACTTCAGAATGTaGTGCTGCGCATGTGCCGAGGGTGGTTCTCCACTC | + |
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Preference number: 4 (lower is better) Translates to: SRSLQWPKNFRM*CCACAEGGSPL Trigger: GAGTGGAGAACCACCCTCGGCACATGCGCAGCACAACATTCTGAAGTTTTTCGGCCATTGCAACGACCTCGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000150128.8 |
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| CDS-3UTR CCA 90 bp | ACTCAAGTTCAGCAGGTACTGAGAAGCCATTCTCCTGATTCCCTATGGTTCCGTTCTCCCAGCTTCCTCTaGAGGGTCAGAAAGCCTCCG | + |
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Preference number: 4 (lower is better) Translates to: TQVQQVLRSHSPDSLWFRSPSFL*RVRKPP Trigger: CGGAGGCTTTCTGACCCTCCAGAGGAAGCTGGGAGA...ACGGAACCATAGGGAATCAGGAGAATGGCTTCTCAGTACCTGCTGAACTTGAGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078589.7 ENSMUST00000148235.8 |
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| CDS-3UTR GCA 90 bp | TCTTCAAACACTTCCTCATTTCCCGGTCGAGGTCGTTGCAATGGCCGAAAAACTGCTAAGTTTCACTTGTaGCCTGCAGTCACTCTTCTG | + |
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Preference number: 4 (lower is better) Translates to: SSNTSSFPGRGRCNGRKTAKFHL*PAVTLL Trigger: CAGAAGAGTGACTGCAGGGCACAAGTGAAACTTAGC...AGTTTTTCGGCCATTGCAACGACCTCGACCGGGAAATGAGGAAGTGTTTGAAGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000131616.8 |
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| 3UTR CAA 72 bp | TTCTTCAAACACTTCCTCATTTCCCGGTCGAGGTCGTaGCAATGGCCGAAAAACTTCAGAATGTTGTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: FFKHFLISRSRS*QWPKNFRMLCC Trigger: GCAGCACAACATTCTGAAGTTTTTCGGCCATTGCAACGACCTCGACCGGGAAATGAGGAAGTGTTTGAAGAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000150128.8 |
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| CDS-3UTR TCA 90 bp | TCCTCCTCTCTGAGTACTCATTCTTCAAACACTTCCTCATTTCCCGGTCGAGGTTCTTGCTCATTTTTGTaGCATTCCTTTAGCAGGTTA | + |
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Preference number: 4 (lower is better) Translates to: SSSLSTHSSNTSSFPGRGSCSFL*HSFSRL Trigger: TAACCTGCTAAAGGAATGTCACAAAAATGAGCAAGA...ACCTCGACCGGGAAATGAGGAAGTGTTTGAAGAATGAGTACTCAGAGAGGAGGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000150128.8 |
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| CDS GCA 90 bp | CTGGAGGGTCAGAAAGCCTCCGTCGCATGGCGGCGCCGTGCTCCCTaGTCCTGGTCCTCCTCTCTGAGTAATTTTTGTGACATTCCTTTA | + |
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Preference number: 5 (lower is better) Translates to: LEGQKASVAWRRRAP*SWSSSLSNFCDIPL Trigger: TAAAGGAATGTCACAAAAATTACTCAGAGAGGAGGACCAGGAGCAGGGAGCACGGCGCCGCCATGCGACGGAGGCTTTCTGACCCTCCAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078589.7 |
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| CDS CCA 90 bp | GGTCAGAAAGCCTCCGTCGCATGGCGGCGCCGTGCTCCCTGCTCCTaGTCCTCCTCTCTGAGTAATTTTTGTGACATTCCTTTAGCAGGT | + |
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Preference number: 5 (lower is better) Translates to: GQKASVAWRRRAPCS*SSSLSNFCDIPLAG Trigger: ACCTGCTAAAGGAATGTCACAAAAATTACTCAGAGAGGAGGACCAGGAGCAGGGAGCACGGCGCCGCCATGCGACGGAGGCTTTCTGACC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078589.7 |
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| CDS-3UTR CAA 90 bp | GGATGCAGATTCAGGGCAGCAGCAGAGGAAACTCTCCCTGGCACAGCGCGTGGCTTGCTTCTTACACTCTaGCTCATTTTTGTGACATTC | + |
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Preference number: 5 (lower is better) Translates to: GCRFRAAAEETLPGTARGLLLTL*LIFVTF Trigger: GAATGTCACAAAAATGAGCAAGAGTGTAAGAAGCAA...GCCACGCGCTGTGCCAGGGAGAGTTTCCTCTGCTGCTGCCCTGAATCTGCATCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000150128.8 |
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| CDS GCA 72 bp | CAGAAAGCCTCCGTCGCATGGCGGCGCCGTGCTCCCTaGTCCTGGTCCTCCTCTCTGAGTACTAAGTTTCAC | + |
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Preference number: 6 (lower is better) Translates to: QKASVAWRRRAP*SWSSSLSTKFH Trigger: GTGAAACTTAGTACTCAGAGAGGAGGACCAGGAGCAGGGAGCACGGCGCCGCCATGCGACGGAGGCTTTCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128304.2 |
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| CDS GCA 72 bp | CAGAAAGCCTCCGTCGCATGGCGGCGCCGTGCTCCCTaGTCCTGGTCCTCCTCTCTGAGTAATTTTTGTGAC | + |
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Preference number: 6 (lower is better) Translates to: QKASVAWRRRAP*SWSSSLSNFCD Trigger: GTCACAAAAATTACTCAGAGAGGAGGACCAGGAGCAGGGAGCACGGCGCCGCCATGCGACGGAGGCTTTCTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078589.7 |
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| CDS CAA 90 bp | CGTGCTCCCTGCTCCTGGTCCTCCTCTCTGAGTACTAAGTTTCACTaGTGCCCTGCAGTCACTCTTCTGGACTCTTACATTTTTGTGACA | + |
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Preference number: 6 (lower is better) Translates to: RAPCSWSSSLSTKFH*CPAVTLLDSYIFVT Trigger: TGTCACAAAAATGTAAGAGTCCAGAAGAGTGACTGCAGGGCACAAGTGAAACTTAGTACTCAGAGAGGAGGACCAGGAGCAGGGAGCACG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000128304.2 |
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| CDS GCA 72 bp | TCTTCAAACACTTCCTCATTTCCCGGTCGAGGTCGTTaGAATGGCCGAAAAACTTCAGAATGTTGTGATTTT | + |
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Preference number: 6 (lower is better) Translates to: SSNTSSFPGRGR*NGRKTSECCDF Trigger: AAAATCACAACATTCTGAAGTTTTTCGGCCATTGCAACGACCTCGACCGGGAAATGAGGAAGTGTTTGAAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000148235.8 |
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