Pregenerated sensors for CMC1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039163

Ensembl transcript IDs: ENSMUST00000044220.11

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR TCA 90 bp	CCCACACTAGCCATCAGCCTGCACCATCAGAAGGAAATGTACACATaGAACTCTATGACAGTTAGCACTGTGATTGCAGTCAGAGTTACA	+
Preference number: 1 (lower is better) Translates to: PTLAISLHHQKEMYT*NSMTVSTVIAVRVT Trigger: TGTAACTCTGACTGCAATCACAGTGCTAACTGTCATAGAGTTTCATGTGTACATTTCCTTCTGATGGTGCAGGCTGATGGCTAGTGTGGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044220.11
3UTR-3UTR TCA 90 bp	CTCTGGTTCACTGCTGCCGTTAGCAGTGTTGAAGGCGCTCCATTCCTCCTTTGCAAGGAAATGTACACATaGAACTCTATGACAGTTAGC	+
Preference number: 2 (lower is better) Translates to: LWFTAAVSSVEGAPFLLCKEMYT*NSMTVS Trigger: GCTAACTGTCATAGAGTTTCATGTGTACATTTCCTT...GCAAAGGAGGAATGGAGCGCCTTCAACACTGCTAACGGCAGCAGTGAACCAGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044220.11
3UTR TCA 72 bp	GCCATCAGCCTGCACCATCAGAAGGAAATGTACACATaGAACTCTATGACAGTTAGCACTGTGATTGCAGTC	+
Preference number: 3 (lower is better) Translates to: AISLHHQKEMYT*NSMTVSTVIAV Trigger: GACTGCAATCACAGTGCTAACTGTCATAGAGTTTCATGTGTACATTTCCTTCTGATGGTGCAGGCTGATGGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044220.11
3UTR TCA 72 bp	AATTCACCAAATCTCATCTGTTTTCACATAAGCCTCTaGTGGCAGTGCTGGCTAAGTTATCGCCGTAAGAGA	+
Preference number: 3 (lower is better) Translates to: NSPNLICFHISL*WQCWLSYRRKR Trigger: TCTCTTACGGCGATAACTTAGCCAGCACTGCCATCAGAGGCTTATGTGAAAACAGATGAGATTTGGTGAATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044220.11
3UTR CAA 72 bp	GAAGAAGGCTCTGGTTCACTGCTGCCGTTAGCAGTGTaGAAGGCGCTCCATTCCTCCTTTGCTTTAGTCCTT	+
Preference number: 4 (lower is better) Translates to: EEGSGSLLPLAV*KALHSSFALVL Trigger: AAGGACTAAAGCAAAGGAGGAATGGAGCGCCTTCAACACTGCTAACGGCAGCAGTGAACCAGAGCCTTCTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044220.11
CDS-3UTR TCA 90 bp	TCCTCCTTTGCTTTAGTCCTTTCTTCCCACACTAGCCATCAGCCTGCACCATCAATTCTTCCCTTTCCTTaGGATACTCCAGTTTGCATT	+
Preference number: 4 (lower is better) Translates to: SSFALVLSSHTSHQPAPSILPFP*DTPVCI Trigger: AATGCAAACTGGAGTATCTCAAGGAAAGGGAAGAAT...TGATGGTGCAGGCTGATGGCTAGTGTGGGAAGAAAGGACTAAAGCAAAGGAGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044220.11
CDS-3UTR CAA 90 bp	GGCTCTGGTTCACTGCTGCCGTTAGCAGTGTTGAAGGCGCTCCATTCCTCCTTTTTCTGCAGCCTCTTCTaGGTAGGAACTCCAGTTTTT	+
Preference number: 5 (lower is better) Translates to: GSGSLLPLAVLKALHSSFFCSLF*VGTPVF Trigger: AAAAACTGGAGTTCCTACCAAGAAGAGGCTGCAGAA...AAAGGAGGAATGGAGCGCCTTCAACACTGCTAACGGCAGCAGTGAACCAGAGCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044220.11
CDS-3UTR CAA 90 bp	CTCTGGTTCACTGCTGCCGTTAGCAGTGTTGAAGGCGCTCCATTCCTCCTTTGCGGTAAAATCTTCAACTaGTTCGGAGCACCTTTCTCT	+
Preference number: 5 (lower is better) Translates to: LWFTAAVSSVEGAPFLLCGKIFN*FGAPFS Trigger: AGAGAAAGGTGCTCCGAACAAGTTGAAGATTTTACC...GCAAAGGAGGAATGGAGCGCCTTCAACACTGCTAACGGCAGCAGTGAACCAGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044220.11
CDS-3UTR CAA 90 bp	AAAGAGAAACTTACCACAGTTCCTCCCAAACCCCCAATATCACAAAACAGAAGTAATTCTTCCCTTTCCTaGAGATACTCCAGTTTGCAT	+
Preference number: 5 (lower is better) Translates to: KEKLTTVPPKPPISQNRSNSSLS*RYSSLH Trigger: ATGCAAACTGGAGTATCTCAAGGAAAGGGAAGAATT...ACTTCTGTTTTGTGATATTGGGGGTTTGGGAGGAACTGTGGTAAGTTTCTCTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044220.11