Pregenerated sensors for CMBL (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022235Ensembl transcript IDs: ENSMUST00000070918.14, ENSMUST00000161088.3, ENSMUST00000162532.8, ENSMUST00000226951.2
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCCCCCAGTTCCCCTAACAGTCATGCTATCATGGATAGTAAGAGATaGTTAATTATTCAGGCAAATTTGGGCAACAGCTGCCTTGTGCTT | + |
|
Preference number: 1 (lower is better) Translates to: APSSPNSHAIMDSKR*LIIQANLGNSCLVL Trigger: AAGCACAAGGCAGCTGTTGCCCAAATTTGCCTGAATAATTAACCATCTCTTACTATCCATGATAGCATGACTGTTAGGGGAACTGGGGGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000070918.14 |
||
| 3UTR-3UTR CCA 90 bp | CTGGTCCCTGAATTGCCCCCAGTTCCCCTAACAGTCATGCTATCATGGATAGTATTATTCAGGCAAATTTaGGCAACAGCTGCCTTGTGC | + |
|
Preference number: 2 (lower is better) Translates to: LVPELPPVPLTVMLSWIVLFRQI*ATAALC Trigger: GCACAAGGCAGCTGTTGCCCAAATTTGCCTGAATAA...TACTATCCATGATAGCATGACTGTTAGGGGAACTGGGGGCAATTCAGGGACCAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000070918.14 |
||
| 3UTR TCA 72 bp | CAATGTAAGGCCATATCTGAGAATCTAGCTGGTCCCTaGATTGCCCCCAGTTCCCCTAACAGTCATGCTATC | + |
|
Preference number: 3 (lower is better) Translates to: QCKAISENLAGP*IAPSSPNSHAI Trigger: GATAGCATGACTGTTAGGGGAACTGGGGGCAATTCAGGGACCAGCTAGATTCTCAGATATGGCCTTACATTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000070918.14 |
||
| CDS-3UTR CCA 90 bp | GAGATGGTTAATTATTCAGGCAAATTTGGGCAACAGCTGCCTTGTGCTTGGGTGACCAGCTGGGTCCCATaGCTCTTGACCCACAAAGAA | + |
|
Preference number: 4 (lower is better) Translates to: EMVNYSGKFGQQLPCAWVTSWVP*LLTHKE Trigger: TTCTTTGTGGGTCAAGAGCCATGGGACCCAGCTGGT...CACCCAAGCACAAGGCAGCTGTTGCCCAAATTTGCCTGAATAATTAACCATCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070918.14 |
||
| CDS-3UTR CCA 90 bp | AGTAAGAGATGGTTAATTATTCAGGCAAATTTGGGCAACAGCTGCCTTGTGCTTGGACCAGTCACCAGCTaGGTCCCATGGCTCTTGACC | + |
|
Preference number: 4 (lower is better) Translates to: SKRWLIIQANLGNSCLVLGPVTS*VPWLLT Trigger: GGTCAAGAGCCATGGGACCCAGCTGGTGACTGGTCC...AAGCACAAGGCAGCTGTTGCCCAAATTTGCCTGAATAATTAACCATCTCTTACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070918.14 |
||
| CDS-3UTR TCA 90 bp | CTGGTCCCTGAATTGCCCCCAGTTCCCCTAACAGTCATGCTATCATGGATAGTACATCAACCTCCCGATTaGCTTTTCTGGCATTTCTTG | + |
|
Preference number: 4 (lower is better) Translates to: LVPELPPVPLTVMLSWIVHQPPD*LFWHFL Trigger: CAAGAAATGCCAGAAAAGTCAATCGGGAGGTTGATG...TACTATCCATGATAGCATGACTGTTAGGGGAACTGGGGGCAATTCAGGGACCAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000070918.14 |
||
| CDS-3UTR CCA 90 bp | CTGGTCCCTGAATTGCCCCCAGTTCCCCTAACAGTCATGCTATCATGGATAGTACAGCCAAATATATCCTaGACGACAATCACGGCTTTG | + |
|
Preference number: 4 (lower is better) Translates to: LVPELPPVPLTVMLSWIVQPNIS*TTITAL Trigger: CAAAGCCGTGATTGTCGTCCAGGATATATTTGGCTG...TACTATCCATGATAGCATGACTGTTAGGGGAACTGGGGGCAATTCAGGGACCAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000070918.14 |
||
| CDS-3UTR TCA 90 bp | ATCATGGATAGTAAGAGATGGTTAATTATTCAGGCAAATTTGGGCAACAGCTGCGGGTCCCATGGCTCTTaGCCCACAAAGAAGTCTGGG | + |
|
Preference number: 4 (lower is better) Translates to: IMDSKRWLIIQANLGNSCGSHGS*PTKKSG Trigger: CCCAGACTTCTTTGTGGGTCAAGAGCCATGGGACCC...GCAGCTGTTGCCCAAATTTGCCTGAATAATTAACCATCTCTTACTATCCATGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070918.14 |
||
| CDS-3UTR CCA 90 bp | CTGGTCCCTGAATTGCCCCCAGTTCCCCTAACAGTCATGCTATCATGGATAGTAACCCACAAAGAAGTCTaGGACAATAGTTGTGTATCC | + |
|
Preference number: 4 (lower is better) Translates to: LVPELPPVPLTVMLSWIVTHKEV*DNSCVS Trigger: GGATACACAACTATTGTCCCAGACTTCTTTGTGGGT...TACTATCCATGATAGCATGACTGTTAGGGGAACTGGGGGCAATTCAGGGACCAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000070918.14 |
||
| CDS-3UTR TCA 90 bp | GAATTGCCCCCAGTTCCCCTAACAGTCATGCTATCATGGATAGTAAGAGATGGTCCATACTCTAGTTTGTaGCCAATGTCACATGGGCAA | + |
|
Preference number: 4 (lower is better) Translates to: ELPPVPLTVMLSWIVRDGPYSSL*PMSHGQ Trigger: TTGCCCATGTGACATTGGTCACAAACTAGAGTATGG...ACCATCTCTTACTATCCATGATAGCATGACTGTTAGGGGAACTGGGGGCAATTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000070918.14 |
||
| CDS-3UTR GCA 90 bp | AGTAAGAGATGGTTAATTATTCAGGCAAATTTGGGCAACAGCTGCCTTGTGCTTCTGGTGTTGGGCAGCTaGCAGCCAAATATATCCTGG | + |
|
Preference number: 4 (lower is better) Translates to: SKRWLIIQANLGNSCLVLLVLGS*QPNISW Trigger: CCAGGATATATTTGGCTGGCAGCTGCCCAACACCAG...AAGCACAAGGCAGCTGTTGCCCAAATTTGCCTGAATAATTAACCATCTCTTACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070918.14 |
||
| CDS-3UTR CCA 90 bp | GAGATGGTTAATTATTCAGGCAAATTTGGGCAACAGCTGCCTTGTGCTTGGGTGTGTTCTTTAAGCTTCTaGGTCAGTGTAGAAACCTGC | + |
|
Preference number: 4 (lower is better) Translates to: EMVNYSGKFGQQLPCAWVCSLSF*VSVETC Trigger: GCAGGTTTCTACACTGACCCAGAAGCTTAAAGAACA...CACCCAAGCACAAGGCAGCTGTTGCCCAAATTTGCCTGAATAATTAACCATCTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070918.14 |
||
| CDS-3UTR CCA 90 bp | ATCATGGATAGTAAGAGATGGTTAATTATTCAGGCAAATTTGGGCAACAGCTGCCCATATACCTGGTGTTaGGCAGCTGCCAGCCAAATA | + |
|
Preference number: 4 (lower is better) Translates to: IMDSKRWLIIQANLGNSCPYTWC*AAASQI Trigger: TATTTGGCTGGCAGCTGCCCAACACCAGGTATATGG...GCAGCTGTTGCCCAAATTTGCCTGAATAATTAACCATCTCTTACTATCCATGAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070918.14 |
||
| CDS-3UTR TCA 90 bp | ATGGATAGTAAGAGATGGTTAATTATTCAGGCAAATTTGGGCAACAGCTGCCTTCGATGCACAAAGCCATaGGTTTGCCCAGAAAACGTT | + |
|
Preference number: 4 (lower is better) Translates to: MDSKRWLIIQANLGNSCLRCTKP*VCPENV Trigger: AACGTTTTCTGGGCAAACTCATGGCTTTGTGCATCG...AAGGCAGCTGTTGCCCAAATTTGCCTGAATAATTAACCATCTCTTACTATCCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070918.14 |
||
| CDS-3UTR GCA 90 bp | ATCATGGATAGTAAGAGATGGTTAATTATTCAGGCAAATTTGGGCAACAGCTGCAGCAGAAGCCCACAATaGCAATCTTCTGAGCATGAC | + |
|
Preference number: 4 (lower is better) Translates to: IMDSKRWLIIQANLGNSCSRSPQ*QSSEHD Trigger: GTCATGCTCAGAAGATTGGCATTGTGGGCTTCTGCT...GCAGCTGTTGCCCAAATTTGCCTGAATAATTAACCATCTCTTACTATCCATGAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070918.14 |
||
| CDS-3UTR CCA 90 bp | ATCATGGATAGTAAGAGATGGTTAATTATTCAGGCAAATTTGGGCAACAGCTGCGTGACCAATGTCACATaGGCAAGGGTTAGCTTCGTT | + |
|
Preference number: 4 (lower is better) Translates to: IMDSKRWLIIQANLGNSCVTNVT*ARVSFV Trigger: AACGAAGCTAACCCTTGCCCATGTGACATTGGTCAC...GCAGCTGTTGCCCAAATTTGCCTGAATAATTAACCATCTCTTACTATCCATGAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070918.14 |
||
| CDS-3UTR TCA 90 bp | ATGGATAGTAAGAGATGGTTAATTATTCAGGCAAATTTGGGCAACAGCTGCCTTTTTTCTGGCATTTCTTaGTTTCAACCACGCGGGGAA | + |
|
Preference number: 4 (lower is better) Translates to: MDSKRWLIIQANLGNSCLFSGIS*FQPRGE Trigger: TTCCCCGCGTGGTTGAAATCAAGAAATGCCAGAAAA...AAGGCAGCTGTTGCCCAAATTTGCCTGAATAATTAACCATCTCTTACTATCCAT 41% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000070918.14 |
||
| CDS-3UTR CCA 90 bp | ATCATGGATAGTAAGAGATGGTTAATTATTCAGGCAAATTTGGGCAACAGCTGCTTGTGTATCCATTTCTaGCAATCATGTCAGCCATAT | + |
|
Preference number: 4 (lower is better) Translates to: IMDSKRWLIIQANLGNSCLCIHF*QSCQPY Trigger: ATATGGCTGACATGATTGCCAGAAATGGATACACAA...GCAGCTGTTGCCCAAATTTGCCTGAATAATTAACCATCTCTTACTATCCATGAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070918.14 |
||
| CDS TCA 90 bp | CACGCGGGGAAGGTGGACCAGTCACCAGCTGGGTCCCATGGCTCTTaGCCCACAAAGAAGTCTGGGACAATAGTTCTGGTGTTGGGCAGC | + |
|
Preference number: 5 (lower is better) Translates to: HAGKVDQSPAGSHGS*PTKKSGTIVLVLGS Trigger: GCTGCCCAACACCAGAACTATTGTCCCAGACTTCTTTGTGGGTCAAGAGCCATGGGACCCAGCTGGTGACTGGTCCACCTTCCCCGCGTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162532.8 |
||
| CDS CCA 90 bp | TCAGCCATATACCTGGTGTTGGGCAGCTGCCAGCCAAATATATCCTaGACGACAATCACGGCTTTGCCTGCATCCACGGGGGACCGGGTG | + |
|
Preference number: 5 (lower is better) Translates to: SAIYLVLGSCQPNIS*TTITALPASTGDRV Trigger: CACCCGGTCCCCCGTGGATGCAGGCAAAGCCGTGATTGTCGTCCAGGATATATTTGGCTGGCAGCTGCCCAACACCAGGTATATGGCTGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000070918.14 ENSMUST00000161088.3 ENSMUST00000226951.2 |
||
| CDS CCA 90 bp | GGGACAATAGTTCTGGTGTTGGGCAGCTGCCAGCCAAATATATCCTaGACGACAATCACGGCTTTGCCTGCATCCACGGGGGACCGGGTG | + |
|
Preference number: 5 (lower is better) Translates to: GTIVLVLGSCQPNIS*TTITALPASTGDRV Trigger: CACCCGGTCCCCCGTGGATGCAGGCAAAGCCGTGATTGTCGTCCAGGATATATTTGGCTGGCAGCTGCCCAACACCAGAACTATTGTCCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162532.8 |
||
| CDS GCA 90 bp | GACAATCACGGCTTTGCCTGCATCCACGGGGGACCGGGTGACATATaGCTTGATGTGCTCAACCTGAACTTCGTGGCCCATGCCACCATA | + |
|
Preference number: 5 (lower is better) Translates to: DNHGFACIHGGPGDI*LDVLNLNFVAHATI Trigger: TATGGTGGCATGGGCCACGAAGTTCAGGTTGAGCACATCAAGGCATATGTCACCCGGTCCCCCGTGGATGCAGGCAAAGCCGTGATTGTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000070918.14 ENSMUST00000161088.3 ENSMUST00000162532.8 ENSMUST00000226951.2 |
||
| CDS GCA 90 bp | CAGCTGCCAGCCAAATATATCCTGGACGACAATCACGGCTTTGCCTaGATCCACGGGGGACCGGGTGACATATGCCTTGATGTGCTCAAC | + |
|
Preference number: 5 (lower is better) Translates to: QLPAKYILDDNHGFA*IHGGPGDICLDVLN Trigger: GTTGAGCACATCAAGGCATATGTCACCCGGTCCCCCGTGGATGCAGGCAAAGCCGTGATTGTCGTCCAGGATATATTTGGCTGGCAGCTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000070918.14 ENSMUST00000161088.3 ENSMUST00000162532.8 ENSMUST00000226951.2 |
||
| CDS TCA 90 bp | CACGCGGGGAAGGTGGACCAGTCACCAGCTGGGTCCCATGGCTCTTaGCCCACAAAGAAGTCTGGGACAATAGTTGTGTATCCATTTCTG | + |
|
Preference number: 5 (lower is better) Translates to: HAGKVDQSPAGSHGS*PTKKSGTIVVYPFL Trigger: CAGAAATGGATACACAACTATTGTCCCAGACTTCTTTGTGGGTCAAGAGCCATGGGACCCAGCTGGTGACTGGTCCACCTTCCCCGCGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000070918.14 ENSMUST00000161088.3 ENSMUST00000226951.2 |
||
| CDS CCA 90 bp | TTTCAACCACGCGGGGAAGGTGGACCAGTCACCAGCTGGGTCCCATaGCTCTTGACCCACAAAGAAGTCTGGGACAATAGTTGTGTATCC | + |
|
Preference number: 5 (lower is better) Translates to: FQPRGEGGPVTSWVP*LLTHKEVWDNSCVS Trigger: GGATACACAACTATTGTCCCAGACTTCTTTGTGGGTCAAGAGCCATGGGACCCAGCTGGTGACTGGTCCACCTTCCCCGCGTGGTTGAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000070918.14 ENSMUST00000161088.3 ENSMUST00000226951.2 |
||
| CDS CCA 90 bp | TTTCAACCACGCGGGGAAGGTGGACCAGTCACCAGCTGGGTCCCATaGCTCTTGACCCACAAAGAAGTCTGGGACAATAGTTCTGGTGTT | + |
|
Preference number: 5 (lower is better) Translates to: FQPRGEGGPVTSWVP*LLTHKEVWDNSSGV Trigger: AACACCAGAACTATTGTCCCAGACTTCTTTGTGGGTCAAGAGCCATGGGACCCAGCTGGTGACTGGTCCACCTTCCCCGCGTGGTTGAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162532.8 |
||
| CDS GCA 90 bp | CCATTTCTGGCAATCATGTCAGCCATATACCTGGTGTTGGGCAGCTaGCAGCCAAATATATCCTGGACGACAATCACGGCTTTGCCTGCA | + |
|
Preference number: 5 (lower is better) Translates to: PFLAIMSAIYLVLGS*QPNISWTTITALPA Trigger: TGCAGGCAAAGCCGTGATTGTCGTCCAGGATATATTTGGCTGGCAGCTGCCCAACACCAGGTATATGGCTGACATGATTGCCAGAAATGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000070918.14 ENSMUST00000161088.3 ENSMUST00000226951.2 |
||
| CDS-3UTR CAA 90 bp | CCTGAATTGCCCCCAGTTCCCCTAACAGTCATGCTATCATGGATAGTAAGAGATGCCATATACCTGGTGTaGGGCAGCTGCCAGCCAAAT | + |
|
Preference number: 5 (lower is better) Translates to: PELPPVPLTVMLSWIVRDAIYLV*GSCQPN Trigger: ATTTGGCTGGCAGCTGCCCAACACCAGGTATATGGC...ATCTCTTACTATCCATGATAGCATGACTGTTAGGGGAACTGGGGGCAATTCAGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000070918.14 |
||
| CDS-3UTR CAA 90 bp | GAGATGGTTAATTATTCAGGCAAATTTGGGCAACAGCTGCCTTGTGCTTGGGTGCTTTTCTGGCATTTCTaGATTTCAACCACGCGGGGA | + |
|
Preference number: 5 (lower is better) Translates to: EMVNYSGKFGQQLPCAWVLFWHF*ISTTRG Trigger: TCCCCGCGTGGTTGAAATCAAGAAATGCCAGAAAAG...CACCCAAGCACAAGGCAGCTGTTGCCCAAATTTGCCTGAATAATTAACCATCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070918.14 |
||
| CDS-3UTR CAA 90 bp | ATGGATAGTAAGAGATGGTTAATTATTCAGGCAAATTTGGGCAACAGCTGCCTTGTATGCCGTCATCACTaGGTGCACCACAACACCCCC | + |
|
Preference number: 5 (lower is better) Translates to: MDSKRWLIIQANLGNSCLVCRHH*VHHNTP Trigger: GGGGGTGTTGTGGTGCACCAAGTGATGACGGCATAC...AAGGCAGCTGTTGCCCAAATTTGCCTGAATAATTAACCATCTCTTACTATCCAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070918.14 |
||
| CDS-3UTR CAA 90 bp | GCTATCATGGATAGTAAGAGATGGTTAATTATTCAGGCAAATTTGGGCAACAGCCAATTAGGTTCCTCCTaGCCTCCTCGATGTAGGGCT | + |
|
Preference number: 5 (lower is better) Translates to: AIMDSKRWLIIQANLGNSQLGSS*PPRCRA Trigger: AGCCCTACATCGAGGAGGCAAGGAGGAACCTAATTG...GCTGTTGCCCAAATTTGCCTGAATAATTAACCATCTCTTACTATCCATGATAGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070918.14 |
||
| CDS CAA 90 bp | CCACGCGGGGAAGGTGGACCAGTCACCAGCTGGGTCCCATGGCTCTaGACCCACAAAGAAGTCTGGGACAATAGTTCTGGTGTTGGGCAG | + |
|
Preference number: 6 (lower is better) Translates to: PRGEGGPVTSWVPWL*THKEVWDNSSGVGQ Trigger: CTGCCCAACACCAGAACTATTGTCCCAGACTTCTTTGTGGGTCAAGAGCCATGGGACCCAGCTGGTGACTGGTCCACCTTCCCCGCGTGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162532.8 |
||
| CDS GCA 72 bp | GGCTTTGCCTGCATCCACGGGGGACCGGGTGACATATaGCTTGATGTGCTCAACCTGAACTTCGTGGCCCAT | + |
|
Preference number: 6 (lower is better) Translates to: GFACIHGGPGDI*LDVLNLNFVAH Trigger: ATGGGCCACGAAGTTCAGGTTGAGCACATCAAGGCATATGTCACCCGGTCCCCCGTGGATGCAGGCAAAGCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000070918.14 ENSMUST00000161088.3 ENSMUST00000162532.8 ENSMUST00000226951.2 |
||
| CDS CAA 90 bp | TTGGGCAGCTGCCAGCCAAATATATCCTGGACGACAATCACGGCTTaGCCTGCATCCACGGGGGACCGGGTGACATATGCCTTGATGTGC | + |
|
Preference number: 6 (lower is better) Translates to: LGSCQPNISWTTITA*PASTGDRVTYALMC Trigger: GCACATCAAGGCATATGTCACCCGGTCCCCCGTGGATGCAGGCAAAGCCGTGATTGTCGTCCAGGATATATTTGGCTGGCAGCTGCCCAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000070918.14 ENSMUST00000161088.3 ENSMUST00000162532.8 ENSMUST00000226951.2 |
||
| CDS CCA 72 bp | TACCTGGTGTTGGGCAGCTGCCAGCCAAATATATCCTaGACGACAATCACGGCTTTGCCTGCATCCACGGGG | + |
|
Preference number: 6 (lower is better) Translates to: YLVLGSCQPNIS*TTITALPASTG Trigger: CCCCGTGGATGCAGGCAAAGCCGTGATTGTCGTCCAGGATATATTTGGCTGGCAGCTGCCCAACACCAGGTA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000070918.14 ENSMUST00000161088.3 ENSMUST00000226951.2 |
||
| CDS CCA 72 bp | GTTCTGGTGTTGGGCAGCTGCCAGCCAAATATATCCTaGACGACAATCACGGCTTTGCCTGCATCCACGGGG | + |
|
Preference number: 6 (lower is better) Translates to: VLVLGSCQPNIS*TTITALPASTG Trigger: CCCCGTGGATGCAGGCAAAGCCGTGATTGTCGTCCAGGATATATTTGGCTGGCAGCTGCCCAACACCAGAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162532.8 |
||
| CDS CAA 72 bp | TGCCAGCCAAATATATCCTGGACGACAATCACGGCTTaGCCTGCATCCACGGGGGACCGGGTGACATATGCC | + |
|
Preference number: 6 (lower is better) Translates to: CQPNISWTTITA*PASTGDRVTYA Trigger: GGCATATGTCACCCGGTCCCCCGTGGATGCAGGCAAAGCCGTGATTGTCGTCCAGGATATATTTGGCTGGCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000070918.14 ENSMUST00000161088.3 ENSMUST00000162532.8 ENSMUST00000226951.2 |
||
| CDS CCA 72 bp | TTCTGGCATTTCTTGATTTCAACCACGCGGGGAAGGTaGACCAGTCACCAGCTGGGTCCCATGGCTCTTGAC | + |
|
Preference number: 6 (lower is better) Translates to: FWHFLISTTRGR*TSHQLGPMALD Trigger: GTCAAGAGCCATGGGACCCAGCTGGTGACTGGTCCACCTTCCCCGCGTGGTTGAAATCAAGAAATGCCAGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000070918.14 ENSMUST00000161088.3 ENSMUST00000162532.8 ENSMUST00000226951.2 |
||
| CDS CAA 90 bp | CCACGCGGGGAAGGTGGACCAGTCACCAGCTGGGTCCCATGGCTCTaGACCCACAAAGAAGTCTGGGACAATAGTTGTGTATCCATTTCT | + |
|
Preference number: 6 (lower is better) Translates to: PRGEGGPVTSWVPWL*THKEVWDNSCVSIS Trigger: AGAAATGGATACACAACTATTGTCCCAGACTTCTTTGTGGGTCAAGAGCCATGGGACCCAGCTGGTGACTGGTCCACCTTCCCCGCGTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000070918.14 ENSMUST00000161088.3 ENSMUST00000226951.2 |
||
| CDS TCA 72 bp | AAGGTGGACCAGTCACCAGCTGGGTCCCATGGCTCTTaGCCCACAAAGAAGTCTGGGACAATAGTTCTGGTG | + |
|
Preference number: 6 (lower is better) Translates to: KVDQSPAGSHGS*PTKKSGTIVLV Trigger: CACCAGAACTATTGTCCCAGACTTCTTTGTGGGTCAAGAGCCATGGGACCCAGCTGGTGACTGGTCCACCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162532.8 |
||
| CDS TCA 72 bp | AAGGTGGACCAGTCACCAGCTGGGTCCCATGGCTCTTaGCCCACAAAGAAGTCTGGGACAATAGTTGTGTAT | + |
|
Preference number: 6 (lower is better) Translates to: KVDQSPAGSHGS*PTKKSGTIVVY Trigger: ATACACAACTATTGTCCCAGACTTCTTTGTGGGTCAAGAGCCATGGGACCCAGCTGGTGACTGGTCCACCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000070918.14 ENSMUST00000161088.3 ENSMUST00000226951.2 |
||
| CDS CAA 72 bp | AGACATACTTGTTCAGCCATTCAATTAGGTTCCTCCTaGCCTCCTCGATGTAGGGCTTGTCAGCAGGGGAGC | + |
|
Preference number: 6 (lower is better) Translates to: RHTCSAIQLGSS*PPRCRACQQGS Trigger: GCTCCCCTGCTGACAAGCCCTACATCGAGGAGGCAAGGAGGAACCTAATTGAATGGCTGAACAAGTATGTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070918.14 |
||
| CDS GCA 72 bp | AAGAAGTCTGGGACAATAGTTCTGGTGTTGGGCAGCTaGCAGCCAAATATATCCTGGACGACAATCACGGCT | + |
|
Preference number: 6 (lower is better) Translates to: KKSGTIVLVLGS*QPNISWTTITA Trigger: AGCCGTGATTGTCGTCCAGGATATATTTGGCTGGCAGCTGCCCAACACCAGAACTATTGTCCCAGACTTCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162532.8 |
||
| CDS CAA 72 bp | CCATTTCTGGCAATCATGTCAGCCATATACCTGGTGTaGGGCAGCTGCCAGCCAAATATATCCTGGACGACA | + |
|
Preference number: 6 (lower is better) Translates to: PFLAIMSAIYLV*GSCQPNISWTT Trigger: TGTCGTCCAGGATATATTTGGCTGGCAGCTGCCCAACACCAGGTATATGGCTGACATGATTGCCAGAAATGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000070918.14 ENSMUST00000161088.3 ENSMUST00000226951.2 |
||
| CDS CAA 90 bp | GTTGTGTATCCATTTCTGGCAATCATGTCAGCCATATACCTGGTGTaGGGCAGCTGCCAGCCAAATATATCCTGGACGACAATCACGGCT | + |
|
Preference number: 6 (lower is better) Translates to: VVYPFLAIMSAIYLV*GSCQPNISWTTITA Trigger: AGCCGTGATTGTCGTCCAGGATATATTTGGCTGGCAGCTGCCCAACACCAGGTATATGGCTGACATGATTGCCAGAAATGGATACACAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000070918.14 ENSMUST00000161088.3 ENSMUST00000226951.2 |
||
| CDS TCA 72 bp | GTCTCAGATACCTCAAGACAGCATCAACCTCCCGATTaGCTTTTCTGGCATTTCTTGATTTCAACCACGCGG | + |
|
Preference number: 6 (lower is better) Translates to: VSDTSRQHQPPD*LFWHFLISTTR Trigger: CCGCGTGGTTGAAATCAAGAAATGCCAGAAAAGTCAATCGGGAGGTTGATGCTGTCTTGAGGTATCTGAGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000070918.14 ENSMUST00000161088.3 ENSMUST00000162532.8 ENSMUST00000226951.2 |
||
| CDS CCA 72 bp | TGTATCCATTTCTGGCAATCATGTCAGCCATATACCTaGTGTTGGGCAGCTGCCAGCCAAATATATCCTGGA | + |
|
Preference number: 6 (lower is better) Translates to: CIHFWQSCQPYT*CWAAASQIYPG Trigger: TCCAGGATATATTTGGCTGGCAGCTGCCCAACACCAGGTATATGGCTGACATGATTGCCAGAAATGGATACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000070918.14 ENSMUST00000161088.3 ENSMUST00000226951.2 |
||
| CDS CAA 72 bp | TGTCTCAGATACCTCAAGACAGCATCAACCTCCCGATaGACTTTTCTGGCATTTCTTGATTTCAACCACGCG | + |
|
Preference number: 6 (lower is better) Translates to: CLRYLKTASTSR*TFLAFLDFNHA Trigger: CGCGTGGTTGAAATCAAGAAATGCCAGAAAAGTCAATCGGGAGGTTGATGCTGTCTTGAGGTATCTGAGACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000070918.14 ENSMUST00000161088.3 ENSMUST00000162532.8 ENSMUST00000226951.2 |
||
| CDS CAA 72 bp | GCAGTCTTCTCTCTTCCGATGCACAAAGCCATGAGTTaGCCCAGAAAACGTTTTAACTTGGTAATTAACTAT | + |
|
Preference number: 6 (lower is better) Translates to: AVFSLPMHKAMS*PRKRFNLVINY Trigger: ATAGTTAATTACCAAGTTAAAACGTTTTCTGGGCAAACTCATGGCTTTGTGCATCGGAAGAGAGAAGACTGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070918.14 |
||
| CDS CCA 72 bp | TTTAAGCTTCTGGGTCAGTGTAGAAACCTGCTCAAGTaGAATCACAGTGTCATTTTCTGCAAAAATAAACAA | + |
|
Preference number: 6 (lower is better) Translates to: FKLLGQCRNLLK*NHSVIFCKNKQ Trigger: TTGTTTATTTTTGCAGAAAATGACACTGTGATTCCACTTGAGCAGGTTTCTACACTGACCCAGAAGCTTAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000070918.14 ENSMUST00000226951.2 |
||