Pregenerated sensors for CMA2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000068289Ensembl transcript IDs: ENSMUST00000089555.3, ENSMUST00000228263.2
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GAACAGTCCATCATCACAGACTTTATTTTTCAGATCATCTTGGGGACAGACTGGATGCTAGGGACATGCTaGGGGCAGGCAGGGGACAGG | + |
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Preference number: 2 (lower is better) Translates to: EQSIITDFIFQIILGTDWMLGTC*GQAGDR Trigger: CCTGTCCCCTGCCTGCCCCCAGCATGTCCCTAGCAT...CCAGTCTGTCCCCAAGATGATCTGAAAAATAAAGTCTGTGATGATGGACTGTTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000228263.2 |
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| 3UTR TCA 72 bp | GGGGCAGGCAGGGGACAGGATGGACACATGCTTTGTTaGACCCAAGGGTTATCAGAAGAGCTCTGGCTTGAA | + |
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Preference number: 3 (lower is better) Translates to: GAGRGQDGHMLC*TQGLSEELWLE Trigger: TTCAAGCCAGAGCTCTTCTGATAACCCTTGGGTTCAACAAAGCATGTGTCCATCCTGTCCCCTGCCTGCCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000089555.3 ENSMUST00000228263.2 |
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| CDS-3UTR GCA 90 bp | GGGCAGGCAGGGGACAGGATGGACACATGCTTTGTTGAACCCAAGGGTTATCAGTCGCCCCCAGCCAGCTaGCCAACACATCGTCCCAGG | + |
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Preference number: 4 (lower is better) Translates to: GQAGDRMDTCFVEPKGYQSPPAS*PTHRPR Trigger: CCTGGGACGATGTGTTGGGCAGCTGGCTGGGGGCGA...CTGATAACCCTTGGGTTCAACAAAGCATGTGTCCATCCTGTCCCCTGCCTGCCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000089555.3 ENSMUST00000228263.2 |
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| CDS-3UTR TCA 90 bp | GGGCAGGCAGGGGACAGGATGGACACATGCTTTGTTGAACCCAAGGGTTATCAGGTGGGGAGATTCGGGTaGAGATTGCAGGGGGCTTTG | + |
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Preference number: 4 (lower is better) Translates to: GQAGDRMDTCFVEPKGYQVGRFG*RLQGAL Trigger: CAAAGCCCCCTGCAATCTTCACCCGAATCTCCCCAC...CTGATAACCCTTGGGTTCAACAAAGCATGTGTCCATCCTGTCCCCTGCCTGCCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000089555.3 ENSMUST00000228263.2 |
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| CDS-3UTR GCA 90 bp | GGGGGCAGGCAGGGGACAGGATGGACACATGCTTTGTTGAACCCAAGGGTTATCGATTCGGGTGAAGATTaGAGGGGGCTTTGCATTTCC | + |
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Preference number: 4 (lower is better) Translates to: GGRQGTGWTHALLNPRVIDSGED*RGLCIS Trigger: GGAAATGCAAAGCCCCCTGCAATCTTCACCCGAATC...GATAACCCTTGGGTTCAACAAAGCATGTGTCCATCCTGTCCCCTGCCTGCCCCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000089555.3 ENSMUST00000228263.2 |
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| CDS-3UTR GCA 90 bp | GGGCAGGCAGGGGACAGGATGGACACATGCTTTGTTGAACCCAAGGGTTATCAGGATTCGGGTGAAGATTaGAGGGGGCTTTGCATTTCC | + |
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Preference number: 4 (lower is better) Translates to: GQAGDRMDTCFVEPKGYQDSGED*RGLCIS Trigger: GGAAATGCAAAGCCCCCTGCAATCTTCACCCGAATC...CTGATAACCCTTGGGTTCAACAAAGCATGTGTCCATCCTGTCCCCTGCCTGCCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000089555.3 ENSMUST00000228263.2 |
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| CDS-3UTR TCA 90 bp | GGGCAGGCAGGGGACAGGATGGACACATGCTTTGTTGAACCCAAGGGTTATCAGGTCTCCCATGTATACTaGTGCCACCTTTGTGGAACT | + |
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Preference number: 4 (lower is better) Translates to: GQAGDRMDTCFVEPKGYQVSHVY*CHLCGT Trigger: AGTTCCACAAAGGTGGCATCAGTATACATGGGAGAC...CTGATAACCCTTGGGTTCAACAAAGCATGTGTCCATCCTGTCCCCTGCCTGCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089555.3 ENSMUST00000228263.2 |
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| CDS-3UTR GCA 90 bp | CAGGGGACAGGATGGACACATGCTTTGTTGAACCCAAGGGTTATCAGAAGAGCTCCACCTTTGTGGAACTaGCCACACAGATCTGGAGGC | + |
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Preference number: 4 (lower is better) Translates to: QGTGWTHALLNPRVIRRAPPLWN*PHRSGG Trigger: GCCTCCAGATCTGTGTGGGCAGTTCCACAAAGGTGG...AGCTCTTCTGATAACCCTTGGGTTCAACAAAGCATGTGTCCATCCTGTCCCCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089555.3 ENSMUST00000228263.2 |
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| CDS-3UTR GCA 90 bp | GGGACAGGATGGACACATGCTTTGTTGAACCCAAGGGTTATCAGAAGAGCTCTGCCACCTTTGTGGAACTaGCCACACAGATCTGGAGGC | + |
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Preference number: 4 (lower is better) Translates to: GTGWTHALLNPRVIRRALPPLWN*PHRSGG Trigger: GCCTCCAGATCTGTGTGGGCAGTTCCACAAAGGTGG...CAGAGCTCTTCTGATAACCCTTGGGTTCAACAAAGCATGTGTCCATCCTGTCCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089555.3 ENSMUST00000228263.2 |
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| CDS-3UTR CCA 90 bp | AGGATGGACACATGCTTTGTTGAACCCAAGGGTTATCAGAAGAGCTCTGGCTTGACATCGTCCCAGGCTTaGCAAAGTCAGAGGGGGCAG | + |
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Preference number: 4 (lower is better) Translates to: RMDTCFVEPKGYQKSSGLTSSQA*QSQRGQ Trigger: CTGCCCCCTCTGACTTTGCCAAGCCTGGGACGATGT...CAAGCCAGAGCTCTTCTGATAACCCTTGGGTTCAACAAAGCATGTGTCCATCCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000089555.3 ENSMUST00000228263.2 |
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| CDS-3UTR GCA 90 bp | GGGGGCAGGCAGGGGACAGGATGGACACATGCTTTGTTGAACCCAAGGGTTATCTCTTCCACTACAGTGTaGAGCAGTCATCACAAATTG | + |
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Preference number: 4 (lower is better) Translates to: GGRQGTGWTHALLNPRVISSTTV*SSHHKL Trigger: CAATTTGTGATGACTGCTGCACACTGTAGTGGAAGA...GATAACCCTTGGGTTCAACAAAGCATGTGTCCATCCTGTCCCCTGCCTGCCCCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000089555.3 |
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| CDS-3UTR GCA 90 bp | TACAGGGAACAGTCCATCATCACAGACTTTATTTTTCAGATCATCTTGGGGACATCGCCCCCAGCCAGCTaGCCAACACATCGTCCCAGG | + |
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Preference number: 4 (lower is better) Translates to: YREQSIITDFIFQIILGTSPPAS*PTHRPR Trigger: CCTGGGACGATGTGTTGGGCAGCTGGCTGGGGGCGA...TGTCCCCAAGATGATCTGAAAAATAAAGTCTGTGATGATGGACTGTTCCCTGTA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000228263.2 |
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| CDS-3UTR TCA 90 bp | CAGGCAGGGGACAGGATGGACACATGCTTTGTTGAACCCAAGGGTTATCAGAAGAGGCCTTTTTCCCCATaGTTCTCAGTTCTACCTCTC | + |
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Preference number: 4 (lower is better) Translates to: QAGDRMDTCFVEPKGYQKRPFSP*FSVLPL Trigger: GAGAGGTAGAACTGAGAATCATGGGGAAAAAGGCCT...CTTCTGATAACCCTTGGGTTCAACAAAGCATGTGTCCATCCTGTCCCCTGCCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000089555.3 ENSMUST00000228263.2 |
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| CDS-3UTR CCA 90 bp | GAACAGTCCATCATCACAGACTTTATTTTTCAGATCATCTTGGGGACAGACTGGACATCGTCCCAGGCTTaGCAAAGTCAGAGGGGGCAG | + |
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Preference number: 4 (lower is better) Translates to: EQSIITDFIFQIILGTDWTSSQA*QSQRGQ Trigger: CTGCCCCCTCTGACTTTGCCAAGCCTGGGACGATGT...CCAGTCTGTCCCCAAGATGATCTGAAAAATAAAGTCTGTGATGATGGACTGTTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000228263.2 |
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| CDS-3UTR GCA 90 bp | TGGGGGCAGGCAGGGGACAGGATGGACACATGCTTTGTTGAACCCAAGGGTTATTTATCTTCTGCTGTGTaGATTCTCTCTTTCTCACAT | + |
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Preference number: 4 (lower is better) Translates to: WGQAGDRMDTCFVEPKGYLSSAV*ILSFSH Trigger: ATGTGAGAAAGAGAGAATGCACACAGCAGAAGATAA...ATAACCCTTGGGTTCAACAAAGCATGTGTCCATCCTGTCCCCTGCCTGCCCCCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000089555.3 ENSMUST00000228263.2 |
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| CDS-3UTR TCA 90 bp | AGGATGGACACATGCTTTGTTGAACCCAAGGGTTATCAGAAGAGCTCTGGCTTGTATGAGCTCCAAGAGTaGCAGTCATTCTTCTTCCAC | + |
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Preference number: 4 (lower is better) Translates to: RMDTCFVEPKGYQKSSGLYELQE*QSFFFH Trigger: GTGGAAGAAGAATGACTGTCACTCTTGGAGCTCATA...CAAGCCAGAGCTCTTCTGATAACCCTTGGGTTCAACAAAGCATGTGTCCATCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089555.3 |
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| CDS-3UTR TCA 90 bp | CAGGGAACAGTCCATCATCACAGACTTTATTTTTCAGATCATCTTGGGGACAGAAGGCCTTTTTCCCCATaGTTCTCAGTTCTACCTCTC | + |
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Preference number: 4 (lower is better) Translates to: QGTVHHHRLYFSDHLGDRRPFSP*FSVLPL Trigger: GAGAGGTAGAACTGAGAATCATGGGGAAAAAGGCCT...TCTGTCCCCAAGATGATCTGAAAAATAAAGTCTGTGATGATGGACTGTTCCCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000228263.2 |
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| CDS-3UTR GCA 90 bp | AGGATGGACACATGCTTTGTTGAACCCAAGGGTTATCAGAAGAGCTCTGGCTTGTTATCTTCTGCTGTGTaGATTCTCTCTTTCTCACAT | + |
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Preference number: 4 (lower is better) Translates to: RMDTCFVEPKGYQKSSGLLSSAV*ILSFSH Trigger: ATGTGAGAAAGAGAGAATGCACACAGCAGAAGATAA...CAAGCCAGAGCTCTTCTGATAACCCTTGGGTTCAACAAAGCATGTGTCCATCCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089555.3 ENSMUST00000228263.2 |
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| CDS-3UTR GCA 90 bp | CAGGGGACAGGATGGACACATGCTTTGTTGAACCCAAGGGTTATCAGAAGAGCTTCAACTTTTATCTTCTaGTGTGTGCATTCTCTCTTT | + |
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Preference number: 4 (lower is better) Translates to: QGTGWTHALLNPRVIRRASTFIF*CVHSLF Trigger: AAAGAGAGAATGCACACAGCAGAAGATAAAAGTTGA...AGCTCTTCTGATAACCCTTGGGTTCAACAAAGCATGTGTCCATCCTGTCCCCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000089555.3 ENSMUST00000228263.2 |
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| CDS-3UTR GCA 90 bp | GGGACAGGATGGACACATGCTTTGTTGAACCCAAGGGTTATCAGAAGAGCTCTGTCAACTTTTATCTTCTaGTGTGTGCATTCTCTCTTT | + |
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Preference number: 4 (lower is better) Translates to: GTGWTHALLNPRVIRRALSTFIF*CVHSLF Trigger: AAAGAGAGAATGCACACAGCAGAAGATAAAAGTTGA...CAGAGCTCTTCTGATAACCCTTGGGTTCAACAAAGCATGTGTCCATCCTGTCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089555.3 ENSMUST00000228263.2 |
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| CDS-3UTR TCA 90 bp | TACAGGGAACAGTCCATCATCACAGACTTTATTTTTCAGATCATCTTGGGGACATATGAGCTCCAAGAGTaGCAGTCATTCTTCCAAAAT | + |
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Preference number: 4 (lower is better) Translates to: YREQSIITDFIFQIILGTYELQE*QSFFQN Trigger: ATTTTGGAAGAATGACTGTCACTCTTGGAGCTCATA...TGTCCCCAAGATGATCTGAAAAATAAAGTCTGTGATGATGGACTGTTCCCTGTA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000228263.2 |
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| CDS-3UTR CAA 90 bp | GGGTTATCAGAAGAGCTCTGGCTTGAAGACTCTGATGCACGCAGGTCAGGCTTTCACATCGTCCCAGGCTaGGCAAAGTCAGAGGGGGCA | + |
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Preference number: 5 (lower is better) Translates to: GLSEELWLEDSDARRSGFHIVPG*AKSEGA Trigger: TGCCCCCTCTGACTTTGCCAAGCCTGGGACGATGTG...AAAGCCTGACCTGCGTGCATCAGAGTCTTCAAGCCAGAGCTCTTCTGATAACCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000089555.3 ENSMUST00000228263.2 |
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| CDS-3UTR CAA 90 bp | TGGGGGCAGGCAGGGGACAGGATGGACACATGCTTTGTTGAACCCAAGGGTTATGAAACCCACCACAGATaGCCACATAACCTTTCCTTC | + |
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Preference number: 5 (lower is better) Translates to: WGQAGDRMDTCFVEPKGYETHHR*PHNLSF Trigger: GAAGGAAAGGTTATGTGGCAATCTGTGGTGGGTTTC...ATAACCCTTGGGTTCAACAAAGCATGTGTCCATCCTGTCCCCTGCCTGCCCCCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000089555.3 |
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| CDS GCA 90 bp | GACTCTGTTAATCCAGGGCACATGTGGGGAGATTCGGGTGAAGATTaGAGGGGGCTTTGCATTTCCGCGTCCAGAAGATACAATACCATG | + |
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Preference number: 5 (lower is better) Translates to: DSVNPGHMWGDSGED*RGLCISASRRYNTM Trigger: CATGGTATTGTATCTTCTGGACGCGGAAATGCAAAGCCCCCTGCAATCTTCACCCGAATCTCCCCACATGTGCCCTGGATTAACAGAGTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000089555.3 ENSMUST00000228263.2 |
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| CDS-3UTR CAA 90 bp | CAGGGGACAGGATGGACACATGCTTTGTTGAACCCAAGGGTTATCAGAAGAGCTAGCAGTCATCACAAATaGGGGCGTTATGAGAAACCC | + |
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Preference number: 5 (lower is better) Translates to: QGTGWTHALLNPRVIRRASSHHK*GRYEKP Trigger: GGGTTTCTCATAACGCCCCAATTTGTGATGACTGCT...AGCTCTTCTGATAACCCTTGGGTTCAACAAAGCATGTGTCCATCCTGTCCCCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089555.3 |
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| CDS-3UTR CAA 90 bp | GGGGGCAGGCAGGGGACAGGATGGACACATGCTTTGTTGAACCCAAGGGTTATCAGTAATACGATGTCATaGAACTTGGAAGACACATTG | + |
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Preference number: 5 (lower is better) Translates to: GGRQGTGWTHALLNPRVISNTMS*NLEDTL Trigger: CAATGTGTCTTCCAAGTTCAATGACATCGTATTACT...GATAACCCTTGGGTTCAACAAAGCATGTGTCCATCCTGTCCCCTGCCTGCCCCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000089555.3 ENSMUST00000228263.2 |
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| CDS GCA 90 bp | ATTATGAGCTCCAAGAGTGACAGTCATTCTTCTTCCACTACAGTGTaGAGCAGTCATCACAAATTGGGGCGTTATGAGAAACCCACCACA | + |
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Preference number: 5 (lower is better) Translates to: IMSSKSDSHSSSTTV*SSHHKLGRYEKPTT Trigger: TGTGGTGGGTTTCTCATAACGCCCCAATTTGTGATGACTGCTGCACACTGTAGTGGAAGAAGAATGACTGTCACTCTTGGAGCTCATAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089555.3 |
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| CDS-3UTR CAA 90 bp | CAGGCAGGGGACAGGATGGACACATGCTTTGTTGAACCCAAGGGTTATCAGAAGAGTAATACGATGTCATaGAACTTGGAAGACACATTG | + |
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Preference number: 5 (lower is better) Translates to: QAGDRMDTCFVEPKGYQKSNTMS*NLEDTL Trigger: CAATGTGTCTTCCAAGTTCAATGACATCGTATTACT...CTTCTGATAACCCTTGGGTTCAACAAAGCATGTGTCCATCCTGTCCCCTGCCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089555.3 ENSMUST00000228263.2 |
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| CDS TCA 90 bp | TCTGCTGTGTGCATTCTCTCTTTCTCACATTATGAGCTCCAAGAGTaGCAGTCATTCTTCTTCCACTACAGTGTGCAGCAGTCATCACAA | + |
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Preference number: 5 (lower is better) Translates to: SAVCILSFSHYELQE*QSFFFHYSVQQSSQ Trigger: TTGTGATGACTGCTGCACACTGTAGTGGAAGAAGAATGACTGTCACTCTTGGAGCTCATAATGTGAGAAAGAGAGAATGCACACAGCAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089555.3 |
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| CDS GCA 72 bp | AATCCAGGGCACATGTGGGGAGATTCGGGTGAAGATTaGAGGGGGCTTTGCATTTCCGCGTCCAGAAGATAC | + |
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Preference number: 6 (lower is better) Translates to: NPGHMWGDSGED*RGLCISASRRY Trigger: GTATCTTCTGGACGCGGAAATGCAAAGCCCCCTGCAATCTTCACCCGAATCTCCCCACATGTGCCCTGGATT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000089555.3 ENSMUST00000228263.2 |
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| CDS CCA 72 bp | CTTGCCCTCTATGACTCTGTTAATCCAGGGCACATGTaGGGAGATTCGGGTGAAGATTGCAGGGGGCTTTGC | + |
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Preference number: 6 (lower is better) Translates to: LALYDSVNPGHM*GDSGEDCRGLC Trigger: GCAAAGCCCCCTGCAATCTTCACCCGAATCTCCCCACATGTGCCCTGGATTAACAGAGTCATAGAGGGCAAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000089555.3 ENSMUST00000228263.2 |
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| CDS GCA 72 bp | ATGTGGGGAGATTCGGGTGAAGATTGCAGGGGGCTTTaGATTTCCGCGTCCAGAAGATACAATACCATGGGC | + |
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Preference number: 6 (lower is better) Translates to: MWGDSGEDCRGL*ISASRRYNTMG Trigger: GCCCATGGTATTGTATCTTCTGGACGCGGAAATGCAAAGCCCCCTGCAATCTTCACCCGAATCTCCCCACAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000089555.3 ENSMUST00000228263.2 |
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| CDS CAA 90 bp | ACAGTAGAGGTCCTCCAGAGTCTCCCATGTATACTGATGCCACCTTaGTGGAACTGCCCACACAGATCTGGAGGCTATCCTTGTAATGCT | + |
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Preference number: 6 (lower is better) Translates to: TVEVLQSLPCILMPP*WNCPHRSGGYPCNA Trigger: AGCATTACAAGGATAGCCTCCAGATCTGTGTGGGCAGTTCCACAAAGGTGGCATCAGTATACATGGGAGACTCTGGAGGACCTCTACTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089555.3 ENSMUST00000228263.2 |
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| CDS GCA 72 bp | AGTCTCCCATGTATACTGATGCCACCTTTGTGGAACTaGCCACACAGATCTGGAGGCTATCCTTGTAATGCT | + |
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Preference number: 6 (lower is better) Translates to: SLPCILMPPLWN*PHRSGGYPCNA Trigger: AGCATTACAAGGATAGCCTCCAGATCTGTGTGGGCAGTTCCACAAAGGTGGCATCAGTATACATGGGAGACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089555.3 ENSMUST00000228263.2 |
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| CDS TCA 72 bp | GAAACCCACCACAGATTGCCACATAACCTTTCCTTCTaGAGGTATTCACATAGGCCATGTAAGGTCGGGAGT | + |
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Preference number: 6 (lower is better) Translates to: ETHHRLPHNLSF*RYSHRPCKVGS Trigger: ACTCCCGACCTTACATGGCCTATGTGAATACCTTCAGAAGGAAAGGTTATGTGGCAATCTGTGGTGGGTTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089555.3 |
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| CDS TCA 72 bp | TGCATTCTCTCTTTCTCACATTATGAGCTCCAAGAGTaGCAGTCATTCTTCTTCCACTACAGTGTGCAGCAG | + |
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Preference number: 6 (lower is better) Translates to: CILSFSHYELQE*QSFFFHYSVQQ Trigger: CTGCTGCACACTGTAGTGGAAGAAGAATGACTGTCACTCTTGGAGCTCATAATGTGAGAAAGAGAGAATGCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089555.3 |
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| CDS GCA 72 bp | TCCAAGAGTGACAGTCATTCTTCTTCCACTACAGTGTaGAGCAGTCATCACAAATTGGGGCGTTATGAGAAA | + |
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Preference number: 6 (lower is better) Translates to: SKSDSHSSSTTV*SSHHKLGRYEK Trigger: TTTCTCATAACGCCCCAATTTGTGATGACTGCTGCACACTGTAGTGGAAGAAGAATGACTGTCACTCTTGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089555.3 |
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| CDS GCA 72 bp | AGGGGAACTACATCCACAGCAGAAGTCAAGTTAGCTTaGTTTTTAAGCTTCAGTAATACGATGTCATTGAAC | + |
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Preference number: 6 (lower is better) Translates to: RGTTSTAEVKLA*FLSFSNTMSLN Trigger: GTTCAATGACATCGTATTACTGAAGCTTAAAAAGCAAGCTAACTTGACTTCTGCTGTGGATGTAGTTCCCCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000089555.3 ENSMUST00000228263.2 |
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