Pregenerated sensors for CMA1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022225Ensembl transcript IDs: ENSMUST00000022834.7, ENSMUST00000226280.2
Found 72 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GACCAGGCAGGGCTTCAGCAGGAACTACAGACAGGCCAGATCGCATaGCACACAAAACCTGCACTATTCCAGTTCCAGATTTCCTCACAG | + |
|
Preference number: 1 (lower is better) Translates to: DQAGLQQELQTGQIA*HTKPALFQFQISSQ Trigger: CTGTGAGGAAATCTGGAACTGGAATAGTGCAGGTTTTGTGTGCCATGCGATCTGGCCTGTCTGTAGTTCCTGCTGAAGCCCTGCCTGGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| 3UTR CCA 72 bp | GGGCTTCAGCAGGAACTACAGACAGGCCAGATCGCATaGCACACAAAACCTGCACTATTCCAGTTCCAGATT | + |
|
Preference number: 3 (lower is better) Translates to: GLQQELQTGQIA*HTKPALFQFQI Trigger: AATCTGGAACTGGAATAGTGCAGGTTTTGTGTGCCATGCGATCTGGCCTGTCTGTAGTTCCTGCTGAAGCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| 3UTR TCA 72 bp | AGGTTAATGAAGATGGTGGCTTTTAGGAACATTCTGTaGCTTGTAAGAACCTTCTGGAAGCTCAGGGACCAG | + |
|
Preference number: 3 (lower is better) Translates to: RLMKMVAFRNIL*LVRTFWKLRDQ Trigger: CTGGTCCCTGAGCTTCCAGAAGGTTCTTACAAGTCACAGAATGTTCCTAAAAGCCACCATCTTCATTAACCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS-3UTR TCA 90 bp | AGCTCAGGGACCAGGCAGGGCTTCAGCAGGAACTACAGACAGGCCAGATCGCATGACCTTCCCGCACAGTaGGCTGCAGTCAGCACAAAG | + |
|
Preference number: 4 (lower is better) Translates to: SSGTRQGFSRNYRQARSHDLPAQ*AAVSTK Trigger: CTTTGTGCTGACTGCAGCTCACTGTGCGGGAAGGTC...ATGCGATCTGGCCTGTCTGTAGTTCCTGCTGAAGCCCTGCCTGGTCCCTGAGCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS-3UTR CCA 90 bp | AGGGACCAGGCAGGGCTTCAGCAGGAACTACAGACAGGCCAGATCGCATGGCACCTCCAGCTTTGGTGCTaGAACCCAGGAGAAGGAGCA | + |
|
Preference number: 4 (lower is better) Translates to: RDQAGLQQELQTGQIAWHLQLWC*NPGEGA Trigger: TGCTCCTTCTCCTGGGTTCCAGCACCAAAGCTGGAG...GTGCCATGCGATCTGGCCTGTCTGTAGTTCCTGCTGAAGCCCTGCCTGGTCCCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS-3UTR GCA 90 bp | AGGGACCAGGCAGGGCTTCAGCAGGAACTACAGACAGGCCAGATCGCATGGCACTCTCTCCAGCTTTGGTaGTGGAACCCAGGAGAAGGA | + |
|
Preference number: 4 (lower is better) Translates to: RDQAGLQQELQTGQIAWHSLQLW*WNPGEG Trigger: TCCTTCTCCTGGGTTCCAGCACCAAAGCTGGAGAGA...GTGCCATGCGATCTGGCCTGTCTGTAGTTCCTGCTGAAGCCCTGCCTGGTCCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS-3UTR GCA 90 bp | GGGACCAGGCAGGGCTTCAGCAGGAACTACAGACAGGCCAGATCGCATGGCACAGCATCTTCTTGGGGTTaGCCACACACAGCTGGGAAT | + |
|
Preference number: 4 (lower is better) Translates to: GTRQGFSRNYRQARSHGTASSWG*PHTAGN Trigger: ATTCCCAGCTGTGTGTGGGCAACCCCAAGAAGATGC...TGTGCCATGCGATCTGGCCTGTCTGTAGTTCCTGCTGAAGCCCTGCCTGGTCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS-3UTR CCA 90 bp | AGGGACCAGGCAGGGCTTCAGCAGGAACTACAGACAGGCCAGATCGCATGGCACCAGGCTTGGGGCTCCTaGAGTCTCATCTTTACTTCC | + |
|
Preference number: 4 (lower is better) Translates to: RDQAGLQQELQTGQIAWHQAWGS*SLIFTS Trigger: GGAAGTAAAGATGAGACTCCAGGAGCCCCAAGCCTG...GTGCCATGCGATCTGGCCTGTCTGTAGTTCCTGCTGAAGCCCTGCCTGGTCCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS-3UTR TCA 90 bp | AGGGACCAGGCAGGGCTTCAGCAGGAACTACAGACAGGCCAGATCGCATGGCACTGTGTCGAAAACTGGTaGAGTGTTTGCAGGCTTGGG | + |
|
Preference number: 4 (lower is better) Translates to: RDQAGLQQELQTGQIAWHCVENW*SVCRLG Trigger: CCCAAGCCTGCAAACACTTCACCAGTTTTCGACACA...GTGCCATGCGATCTGGCCTGTCTGTAGTTCCTGCTGAAGCCCTGCCTGGTCCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS-3UTR TCA 90 bp | AGGGACCAGGCAGGGCTTCAGCAGGAACTACAGACAGGCCAGATCGCATGGCACCCCTCAAGATCTTATTaGTCCAGGGCCTGTAATGGG | + |
|
Preference number: 4 (lower is better) Translates to: RDQAGLQQELQTGQIAWHPSRSY*SRACNG Trigger: CCCATTACAGGCCCTGGATCAATAAGATCTTGAGGG...GTGCCATGCGATCTGGCCTGTCTGTAGTTCCTGCTGAAGCCCTGCCTGGTCCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS-3UTR GCA 90 bp | AGCTCAGGGACCAGGCAGGGCTTCAGCAGGAACTACAGACAGGCCAGATCGCATTCTCTCCAGCTTTGGTaGTGGAACCCAGGAGAAGGA | + |
|
Preference number: 4 (lower is better) Translates to: SSGTRQGFSRNYRQARSHSLQLW*WNPGEG Trigger: TCCTTCTCCTGGGTTCCAGCACCAAAGCTGGAGAGA...ATGCGATCTGGCCTGTCTGTAGTTCCTGCTGAAGCCCTGCCTGGTCCCTGAGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS-3UTR TCA 90 bp | GCATGGCACACAAAACCTGCACTATTCCAGTTCCAGATTTCCTCACAGGCTGGCGACCTTCCCGCACAGTaGGCTGCAGTCAGCACAAAG | + |
|
Preference number: 4 (lower is better) Translates to: AWHTKPALFQFQISSQAGDLPAQ*AAVSTK Trigger: CTTTGTGCTGACTGCAGCTCACTGTGCGGGAAGGTC...GCCAGCCTGTGAGGAAATCTGGAACTGGAATAGTGCAGGTTTTGTGTGCCATGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS-3UTR GCA 90 bp | AGGGACCAGGCAGGGCTTCAGCAGGAACTACAGACAGGCCAGATCGCATGGCACTCCACCTCAAGCTTCTaGCACGTGTCTTCTTTAGAT | + |
|
Preference number: 4 (lower is better) Translates to: RDQAGLQQELQTGQIAWHSTSSF*HVSSLD Trigger: ATCTAAAGAAGACACGTGGCAGAAGCTTGAGGTGGA...GTGCCATGCGATCTGGCCTGTCTGTAGTTCCTGCTGAAGCCCTGCCTGGTCCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS-3UTR CCA 90 bp | TCTGTGACTTGTAAGAACCTTCTGGAAGCTCAGGGACCAGGCAGGGCTTCAGCACTCCAGCTTTGGTGCTaGAACCCAGGAGAAGGAGCA | + |
|
Preference number: 4 (lower is better) Translates to: SVTCKNLLEAQGPGRASALQLWC*NPGEGA Trigger: TGCTCCTTCTCCTGGGTTCCAGCACCAAAGCTGGAG...TGCTGAAGCCCTGCCTGGTCCCTGAGCTTCCAGAAGGTTCTTACAAGTCACAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS-3UTR CCA 90 bp | GGGACCAGGCAGGGCTTCAGCAGGAACTACAGACAGGCCAGATCGCATGGCACACACCTAGGGTTAGCTTaGCTTTCTCCTTCAACTTCA | + |
|
Preference number: 4 (lower is better) Translates to: GTRQGFSRNYRQARSHGTHLGLA*LSPSTS Trigger: TGAAGTTGAAGGAGAAAGCCAAGCTAACCCTAGGTG...TGTGCCATGCGATCTGGCCTGTCTGTAGTTCCTGCTGAAGCCCTGCCTGGTCCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS-3UTR CCA 90 bp | AACCTTCTGGAAGCTCAGGGACCAGGCAGGGCTTCAGCAGGAACTACAGACAGGGCACATTCTCCCGGGTaGGATAAAGTTGAAGTTGGC | + |
|
Preference number: 4 (lower is better) Translates to: NLLEAQGPGRASAGTTDRAHSPG*DKVEVG Trigger: GCCAACTTCAACTTTATCCCACCCGGGAGAATGTGC...CCTGTCTGTAGTTCCTGCTGAAGCCCTGCCTGGTCCCTGAGCTTCCAGAAGGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS-3UTR CCA 90 bp | TCTGTGACTTGTAAGAACCTTCTGGAAGCTCAGGGACCAGGCAGGGCTTCAGCAAAGTGTTTGCAGGCTTaGGGCTCCTGGAGTCTCATC | + |
|
Preference number: 4 (lower is better) Translates to: SVTCKNLLEAQGPGRASAKCLQA*GSWSLI Trigger: GATGAGACTCCAGGAGCCCCAAGCCTGCAAACACTT...TGCTGAAGCCCTGCCTGGTCCCTGAGCTTCCAGAAGGTTCTTACAAGTCACAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS-3UTR TCA 90 bp | CAAAACCTGCACTATTCCAGTTCCAGATTTCCTCACAGGCTGGCAAAAGCTCCAACTCCGTGCCTCCAATaGTCTCTCCAGCTTTGGTGC | + |
|
Preference number: 4 (lower is better) Translates to: QNLHYSSSRFPHRLAKAPTPCLQ*SLQLWC Trigger: GCACCAAAGCTGGAGAGATCATTGGAGGCACGGAGT...TGGAGCTTTTGCCAGCCTGTGAGGAAATCTGGAACTGGAATAGTGCAGGTTTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS-3UTR TCA 90 bp | GCATGGCACACAAAACCTGCACTATTCCAGTTCCAGATTTCCTCACAGGCTGGCTGTGTCGAAAACTGGTaGAGTGTTTGCAGGCTTGGG | + |
|
Preference number: 4 (lower is better) Translates to: AWHTKPALFQFQISSQAGCVENW*SVCRLG Trigger: CCCAAGCCTGCAAACACTTCACCAGTTTTCGACACA...GCCAGCCTGTGAGGAAATCTGGAACTGGAATAGTGCAGGTTTTGTGTGCCATGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS-3UTR CCA 90 bp | GCCAGATCGCATGGCACACAAAACCTGCACTATTCCAGTTCCAGATTTCCTCACAAGTGTTTGCAGGCTTaGGGCTCCTGGAGTCTCATC | + |
|
Preference number: 4 (lower is better) Translates to: ARSHGTQNLHYSSSRFPHKCLQA*GSWSLI Trigger: GATGAGACTCCAGGAGCCCCAAGCCTGCAAACACTT...GTGAGGAAATCTGGAACTGGAATAGTGCAGGTTTTGTGTGCCATGCGATCTGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS-3UTR GCA 90 bp | CACACAAAACCTGCACTATTCCAGTTCCAGATTTCCTCACAGGCTGGCAAAAGCCTCATCTTTACTTCCTaGAGTGTGTCGGAGGCTGGC | + |
|
Preference number: 4 (lower is better) Translates to: HTKPALFQFQISSQAGKSLIFTS*SVSEAG Trigger: GCCAGCCTCCGACACACTGCAGGAAGTAAAGATGAG...GCTTTTGCCAGCCTGTGAGGAAATCTGGAACTGGAATAGTGCAGGTTTTGTGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS-3UTR GCA 90 bp | AAACCTGCACTATTCCAGTTCCAGATTTCCTCACAGGCTGGCAAAAGCTCCAGAGCATCTTCTTGGGGTTaGCCACACACAGCTGGGAAT | + |
|
Preference number: 4 (lower is better) Translates to: KPALFQFQISSQAGKSSRASSWG*PHTAGN Trigger: ATTCCCAGCTGTGTGTGGGCAACCCCAAGAAGATGC...TCTGGAGCTTTTGCCAGCCTGTGAGGAAATCTGGAACTGGAATAGTGCAGGTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS-3UTR CCA 90 bp | AGGCCAGATCGCATGGCACACAAAACCTGCACTATTCCAGTTCCAGATTTCCTCCAGTGTGTCGGAGGCTaGCTCATTCACGTTTGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: RPDRMAHKTCTIPVPDFLQCVGG*LIHVCS Trigger: AGAACAAACGTGAATGAGCCAGCCTCCGACACACTG...GAGGAAATCTGGAACTGGAATAGTGCAGGTTTTGTGTGCCATGCGATCTGGCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS-3UTR GCA 90 bp | GCATGGCACACAAAACCTGCACTATTCCAGTTCCAGATTTCCTCACAGGCTGGCTCCACCTCAAGCTTCTaGCACGTGTCTTCTTTAGAT | + |
|
Preference number: 4 (lower is better) Translates to: AWHTKPALFQFQISSQAGSTSSF*HVSSLD Trigger: ATCTAAAGAAGACACGTGGCAGAAGCTTGAGGTGGA...GCCAGCCTGTGAGGAAATCTGGAACTGGAATAGTGCAGGTTTTGTGTGCCATGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS-3UTR CCA 90 bp | CACACAAAACCTGCACTATTCCAGTTCCAGATTTCCTCACAGGCTGGCAAAAGCGCACATTCTCCCGGGTaGGATAAAGTTGAAGTTGGC | + |
|
Preference number: 4 (lower is better) Translates to: HTKPALFQFQISSQAGKSAHSPG*DKVEVG Trigger: GCCAACTTCAACTTTATCCCACCCGGGAGAATGTGC...GCTTTTGCCAGCCTGTGAGGAAATCTGGAACTGGAATAGTGCAGGTTTTGTGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS-3UTR CCA 90 bp | CAAAACCTGCACTATTCCAGTTCCAGATTTCCTCACAGGCTGGCAAAAGCTCCACAGTGTGTCGGAGGCTaGCTCATTCACGTTTGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: QNLHYSSSRFPHRLAKAPQCVGG*LIHVCS Trigger: AGAACAAACGTGAATGAGCCAGCCTCCGACACACTG...TGGAGCTTTTGCCAGCCTGTGAGGAAATCTGGAACTGGAATAGTGCAGGTTTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS-3UTR CCA 90 bp | GCCAGATCGCATGGCACACAAAACCTGCACTATTCCAGTTCCAGATTTCCTCACCATTTTGCATCTTCTTaGGGTTGCCCACACACAGCT | + |
|
Preference number: 4 (lower is better) Translates to: ARSHGTQNLHYSSSRFPHHFASS*GCPHTA Trigger: AGCTGTGTGTGGGCAACCCCAAGAAGATGCAAAATG...GTGAGGAAATCTGGAACTGGAATAGTGCAGGTTTTGTGTGCCATGCGATCTGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS-3UTR CCA 90 bp | AAACCTGCACTATTCCAGTTCCAGATTTCCTCACAGGCTGGCAAAAGCTCCAGACATTTTGCATCTTCTTaGGGTTGCCCACACACAGCT | + |
|
Preference number: 4 (lower is better) Translates to: KPALFQFQISSQAGKSSRHFASS*GCPHTA Trigger: AGCTGTGTGTGGGCAACCCCAAGAAGATGCAAAATG...TCTGGAGCTTTTGCCAGCCTGTGAGGAAATCTGGAACTGGAATAGTGCAGGTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS-3UTR TCA 90 bp | CCAGATCGCATGGCACACAAAACCTGCACTATTCCAGTTCCAGATTTCCTCACAAGAAGGAGCAGCAGATaGAGAGTAAGAAGATGCATC | + |
|
Preference number: 4 (lower is better) Translates to: PDRMAHKTCTIPVPDFLTRRSSR*RVRRCI Trigger: GATGCATCTTCTTACTCTTCATCTGCTGCTCCTTCT...TGTGAGGAAATCTGGAACTGGAATAGTGCAGGTTTTGTGTGCCATGCGATCTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022834.7 |
||
| CDS-3UTR GCA 90 bp | CAAAACCTGCACTATTCCAGTTCCAGATTTCCTCACAGGCTGGCAAAAGCTCCACCCTTGTATACATTTTaGATCTTCTTGGGGTTGCCC | + |
|
Preference number: 4 (lower is better) Translates to: QNLHYSSSRFPHRLAKAPPLYTF*IFLGLP Trigger: GGGCAACCCCAAGAAGATGCAAAATGTATACAAGGG...TGGAGCTTTTGCCAGCCTGTGAGGAAATCTGGAACTGGAATAGTGCAGGTTTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS-3UTR GCA 90 bp | CACACAAAACCTGCACTATTCCAGTTCCAGATTTCCTCACAGGCTGGCAAAAGCCCCTTGTATACATTTTaGATCTTCTTGGGGTTGCCC | + |
|
Preference number: 4 (lower is better) Translates to: HTKPALFQFQISSQAGKSPLYTF*IFLGLP Trigger: GGGCAACCCCAAGAAGATGCAAAATGTATACAAGGG...GCTTTTGCCAGCCTGTGAGGAAATCTGGAACTGGAATAGTGCAGGTTTTGTGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS-3UTR CCA 90 bp | GATCGCATGGCACACAAAACCTGCACTATTCCAGTTCCAGATTTCCTCACAGGCTTAGATGTTTTGTTATaGGCTCCTAGGAGGACTGTT | + |
|
Preference number: 4 (lower is better) Translates to: DRMAHKTCTIPVPDFLTGLDVLL*APRRTV Trigger: AACAGTCCTCCTAGGAGCCCATAACAAAACATCTAA...GCCTGTGAGGAAATCTGGAACTGGAATAGTGCAGGTTTTGTGTGCCATGCGATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS-3UTR CCA 90 bp | CCAGATCGCATGGCACACAAAACCTGCACTATTCCAGTTCCAGATTTCCTCACATTAGATGTTTTGTTATaGGCTCCTAGGAGGACTGTT | + |
|
Preference number: 4 (lower is better) Translates to: PDRMAHKTCTIPVPDFLTLDVLL*APRRTV Trigger: AACAGTCCTCCTAGGAGCCCATAACAAAACATCTAA...TGTGAGGAAATCTGGAACTGGAATAGTGCAGGTTTTGTGTGCCATGCGATCTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS-3UTR TCA 90 bp | CAAAACCTGCACTATTCCAGTTCCAGATTTCCTCACAGGCTGGCAAAAGCTCCATCATCATATTTTGGATaGAGGAATTGCTTTTCCACC | + |
|
Preference number: 4 (lower is better) Translates to: QNLHYSSSRFPHRLAKAPSSYFG*RNCFST Trigger: GGTGGAAAAGCAATTCCTTCATCCAAAATATGATGA...TGGAGCTTTTGCCAGCCTGTGAGGAAATCTGGAACTGGAATAGTGCAGGTTTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS-3UTR CAA 90 bp | AGGGACCAGGCAGGGCTTCAGCAGGAACTACAGACAGGCCAGATCGCATGGCACTGCATCTTCTTGGGGTaGCCCACACACAGCTGGGAA | + |
|
Preference number: 5 (lower is better) Translates to: RDQAGLQQELQTGQIAWHCIFLG*PTHSWE Trigger: TTCCCAGCTGTGTGTGGGCAACCCCAAGAAGATGCA...GTGCCATGCGATCTGGCCTGTCTGTAGTTCCTGCTGAAGCCCTGCCTGGTCCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS CCA 90 bp | GGGCTCCTGGAGTCTCATCTTTACTTCCTGCAGTGTGTCGGAGGCTaGCTCATTCACGTTTGTTCTGCCCCAGCCAACTGCCCTGCACAT | + |
|
Preference number: 5 (lower is better) Translates to: GLLESHLYFLQCVGG*LIHVCSAPANCPAH Trigger: ATGTGCAGGGCAGTTGGCTGGGGCAGAACAAACGTGAATGAGCCAGCCTCCGACACACTGCAGGAAGTAAAGATGAGACTCCAGGAGCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS-3UTR CAA 90 bp | GGGACCAGGCAGGGCTTCAGCAGGAACTACAGACAGGCCAGATCGCATGGCACAACATTTTGCATCTTCTaGGGGTTGCCCACACACAGC | + |
|
Preference number: 5 (lower is better) Translates to: GTRQGFSRNYRQARSHGTTFCIF*GLPTHS Trigger: GCTGTGTGTGGGCAACCCCAAGAAGATGCAAAATGT...TGTGCCATGCGATCTGGCCTGTCTGTAGTTCCTGCTGAAGCCCTGCCTGGTCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS-3UTR CAA 90 bp | CAGGGACCAGGCAGGGCTTCAGCAGGAACTACAGACAGGCCAGATCGCATGGCAACACCTAGGGTTAGCTaGGCTTTCTCCTTCAACTTC | + |
|
Preference number: 5 (lower is better) Translates to: QGPGRASAGTTDRPDRMATPRVS*AFSFNF Trigger: GAAGTTGAAGGAGAAAGCCAAGCTAACCCTAGGTGT...TGCCATGCGATCTGGCCTGTCTGTAGTTCCTGCTGAAGCCCTGCCTGGTCCCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS TCA 90 bp | ATCTCTCCAGCTTTGGTGCTGGAACCCAGGAGAAGGAGCAGCAGATaGAGAGTAAGAAGATGCATCCTCTCAGAGGGCCTCCTCAGGGCT | + |
|
Preference number: 5 (lower is better) Translates to: ISPALVLEPRRRSSR*RVRRCILSEGLLRA Trigger: AGCCCTGAGGAGGCCCTCTGAGAGGATGCATCTTCTTACTCTTCATCTGCTGCTCCTTCTCCTGGGTTCCAGCACCAAAGCTGGAGAGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022834.7 |
||
| CDS-3UTR CAA 90 bp | CAGGGACCAGGCAGGGCTTCAGCAGGAACTACAGACAGGCCAGATCGCATGGCATCCCTTGTATACATTTaGCATCTTCTTGGGGTTGCC | + |
|
Preference number: 5 (lower is better) Translates to: QGPGRASAGTTDRPDRMASLVYI*HLLGVA Trigger: GGCAACCCCAAGAAGATGCAAAATGTATACAAGGGA...TGCCATGCGATCTGGCCTGTCTGTAGTTCCTGCTGAAGCCCTGCCTGGTCCCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS GCA 90 bp | TCTGGTAAAGACAGCAGGGGGCTTTGCATTCCGATGTACATAGGATaGAATGCCTTGGGCTATCCCAGCACACAGCAGAGGTCCTCCAGA | + |
|
Preference number: 5 (lower is better) Translates to: SGKDSRGLCIPMYIG*NALGYPSTQQRSSR Trigger: TCTGGAGGACCTCTGCTGTGTGCTGGGATAGCCCAAGGCATTGCATCCTATGTACATCGGAATGCAAAGCCCCCTGCTGTCTTTACCAGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS GCA 90 bp | CCAGGGCCTGTAATGGGAGATTCTGGTAAAGACAGCAGGGGGCTTTaGATTCCGATGTACATAGGATGCAATGCCTTGGGCTATCCCAGC | + |
|
Preference number: 5 (lower is better) Translates to: PGPVMGDSGKDSRGL*IPMYIGCNALGYPS Trigger: GCTGGGATAGCCCAAGGCATTGCATCCTATGTACATCGGAATGCAAAGCCCCCTGCTGTCTTTACCAGAATCTCCCATTACAGGCCCTGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS CCA 90 bp | CACAGCTGGGAATTGTGTCGAAAACTGGTGAAGTGTTTGCAGGCTTaGGGCTCCTGGAGTCTCATCTTTACTTCCTGCAGTGTGTCGGAG | + |
|
Preference number: 5 (lower is better) Translates to: HSWELCRKLVKCLQA*GSWSLIFTSCSVSE Trigger: CTCCGACACACTGCAGGAAGTAAAGATGAGACTCCAGGAGCCCCAAGCCTGCAAACACTTCACCAGTTTTCGACACAATTCCCAGCTGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS-3UTR CAA 90 bp | GCCAGATCGCATGGCACACAAAACCTGCACTATTCCAGTTCCAGATTTCCTCACCCGGGTGGGATAAAGTaGAAGTTGGCAGAGAGTGGG | + |
|
Preference number: 5 (lower is better) Translates to: ARSHGTQNLHYSSSRFPHPGGIK*KLAESG Trigger: CCCACTCTCTGCCAACTTCAACTTTATCCCACCCGG...GTGAGGAAATCTGGAACTGGAATAGTGCAGGTTTTGTGTGCCATGCGATCTGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS-3UTR CAA 90 bp | GCCAGATCGCATGGCACACAAAACCTGCACTATTCCAGTTCCAGATTTCCTCACAAACTGGTGAAGTGTTaGCAGGCTTGGGGCTCCTGG | + |
|
Preference number: 5 (lower is better) Translates to: ARSHGTQNLHYSSSRFPHKLVKC*QAWGSW Trigger: CCAGGAGCCCCAAGCCTGCAAACACTTCACCAGTTT...GTGAGGAAATCTGGAACTGGAATAGTGCAGGTTTTGTGTGCCATGCGATCTGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS-3UTR CAA 90 bp | GCATGGCACACAAAACCTGCACTATTCCAGTTCCAGATTTCCTCACAGGCTGGCAGACAGCAGGGGGCTTaGCATTCCGATGTACATAGG | + |
|
Preference number: 5 (lower is better) Translates to: AWHTKPALFQFQISSQAGRQQGA*HSDVHR Trigger: CCTATGTACATCGGAATGCAAAGCCCCCTGCTGTCT...GCCAGCCTGTGAGGAAATCTGGAACTGGAATAGTGCAGGTTTTGTGTGCCATGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS-3UTR CAA 90 bp | AAACCTGCACTATTCCAGTTCCAGATTTCCTCACAGGCTGGCAAAAGCTCCAGAAAACTGGTGAAGTGTTaGCAGGCTTGGGGCTCCTGG | + |
|
Preference number: 5 (lower is better) Translates to: KPALFQFQISSQAGKSSRKLVKC*QAWGSW Trigger: CCAGGAGCCCCAAGCCTGCAAACACTTCACCAGTTT...TCTGGAGCTTTTGCCAGCCTGTGAGGAAATCTGGAACTGGAATAGTGCAGGTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS-3UTR CAA 90 bp | AAACCTGCACTATTCCAGTTCCAGATTTCCTCACAGGCTGGCAAAAGCTCCAGATGCATCTTCTTGGGGTaGCCCACACACAGCTGGGAA | + |
|
Preference number: 5 (lower is better) Translates to: KPALFQFQISSQAGKSSRCIFLG*PTHSWE Trigger: TTCCCAGCTGTGTGTGGGCAACCCCAAGAAGATGCA...TCTGGAGCTTTTGCCAGCCTGTGAGGAAATCTGGAACTGGAATAGTGCAGGTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS-3UTR CAA 90 bp | CACACAAAACCTGCACTATTCCAGTTCCAGATTTCCTCACAGGCTGGCAAAAGCAGACAGCAGGGGGCTTaGCATTCCGATGTACATAGG | + |
|
Preference number: 5 (lower is better) Translates to: HTKPALFQFQISSQAGKSRQQGA*HSDVHR Trigger: CCTATGTACATCGGAATGCAAAGCCCCCTGCTGTCT...GCTTTTGCCAGCCTGTGAGGAAATCTGGAACTGGAATAGTGCAGGTTTTGTGTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS-3UTR CAA 90 bp | CCAGATCGCATGGCACACAAAACCTGCACTATTCCAGTTCCAGATTTCCTCACAACATTTTGCATCTTCTaGGGGTTGCCCACACACAGC | + |
|
Preference number: 5 (lower is better) Translates to: PDRMAHKTCTIPVPDFLTTFCIF*GLPTHS Trigger: GCTGTGTGTGGGCAACCCCAAGAAGATGCAAAATGT...TGTGAGGAAATCTGGAACTGGAATAGTGCAGGTTTTGTGTGCCATGCGATCTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS-3UTR CAA 90 bp | AAACCTGCACTATTCCAGTTCCAGATTTCCTCACAGGCTGGCAAAAGCTCCAGAACACCTAGGGTTAGCTaGGCTTTCTCCTTCAACTTC | + |
|
Preference number: 5 (lower is better) Translates to: KPALFQFQISSQAGKSSRTPRVS*AFSFNF Trigger: GAAGTTGAAGGAGAAAGCCAAGCTAACCCTAGGTGT...TCTGGAGCTTTTGCCAGCCTGTGAGGAAATCTGGAACTGGAATAGTGCAGGTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS-3UTR CAA 90 bp | AGGCCAGATCGCATGGCACACAAAACCTGCACTATTCCAGTTCCAGATTTCCTCTCCCTTGTATACATTTaGCATCTTCTTGGGGTTGCC | + |
|
Preference number: 5 (lower is better) Translates to: RPDRMAHKTCTIPVPDFLSLVYI*HLLGVA Trigger: GGCAACCCCAAGAAGATGCAAAATGTATACAAGGGA...GAGGAAATCTGGAACTGGAATAGTGCAGGTTTTGTGTGCCATGCGATCTGGCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS-3UTR CAA 90 bp | GCCAGATCGCATGGCACACAAAACCTGCACTATTCCAGTTCCAGATTTCCTCACTCTTCTTTAGATGTTTaGTTATGGGCTCCTAGGAGG | + |
|
Preference number: 5 (lower is better) Translates to: ARSHGTQNLHYSSSRFPHSSLDV*LWAPRR Trigger: CCTCCTAGGAGCCCATAACAAAACATCTAAAGAAGA...GTGAGGAAATCTGGAACTGGAATAGTGCAGGTTTTGTGTGCCATGCGATCTGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS-3UTR CAA 90 bp | CAAAACCTGCACTATTCCAGTTCCAGATTTCCTCACAGGCTGGCAAAAGCTCCATCTTCTTTAGATGTTTaGTTATGGGCTCCTAGGAGG | + |
|
Preference number: 5 (lower is better) Translates to: QNLHYSSSRFPHRLAKAPSSLDV*LWAPRR Trigger: CCTCCTAGGAGCCCATAACAAAACATCTAAAGAAGA...TGGAGCTTTTGCCAGCCTGTGAGGAAATCTGGAACTGGAATAGTGCAGGTTTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS TCA 90 bp | AGTAGCATGATGTCGTGGACAACCAAATTCTCATCATATTTTGGATaGAGGAATTGCTTTTCCACCTCAAGCTTCTGCCACGTGTCTTCT | + |
|
Preference number: 5 (lower is better) Translates to: SSMMSWTTKFSSYFG*RNCFSTSSFCHVSS Trigger: AGAAGACACGTGGCAGAAGCTTGAGGTGGAAAAGCAATTCCTTCATCCAAAATATGATGAGAATTTGGTTGTCCACGACATCATGCTACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS CAA 90 bp | CAGCCAACTGCCCTGCACATTCTCCCGGGTGGGATAAAGTTGAAGTaGGCAGAGAGTGGGAGGGTTCCCACACCTAGGGTTAGCTTGGCT | + |
|
Preference number: 6 (lower is better) Translates to: QPTALHILPGGIKLK*AESGRVPTPRVSLA Trigger: AGCCAAGCTAACCCTAGGTGTGGGAACCCTCCCACTCTCTGCCAACTTCAACTTTATCCCACCCGGGAGAATGTGCAGGGCAGTTGGCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS CAA 72 bp | GCCCTGCACATTCTCCCGGGTGGGATAAAGTTGAAGTaGGCAGAGAGTGGGAGGGTTCCCACACCTAGGGTT | + |
|
Preference number: 6 (lower is better) Translates to: ALHILPGGIKLK*AESGRVPTPRV Trigger: AACCCTAGGTGTGGGAACCCTCCCACTCTCTGCCAACTTCAACTTTATCCCACCCGGGAGAATGTGCAGGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS GCA 72 bp | CAGGGGGCTTTGCATTCCGATGTACATAGGATGCAATaGCTTGGGCTATCCCAGCACACAGCAGAGGTCCTC | + |
|
Preference number: 6 (lower is better) Translates to: QGALHSDVHRMQ*LGLSQHTAEVL Trigger: GAGGACCTCTGCTGTGTGCTGGGATAGCCCAAGGCATTGCATCCTATGTACATCGGAATGCAAAGCCCCCTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS GCA 72 bp | GACAGCAGGGGGCTTTGCATTCCGATGTACATAGGATaGAATGCCTTGGGCTATCCCAGCACACAGCAGAGG | + |
|
Preference number: 6 (lower is better) Translates to: DSRGLCIPMYIG*NALGYPSTQQR Trigger: CCTCTGCTGTGTGCTGGGATAGCCCAAGGCATTGCATCCTATGTACATCGGAATGCAAAGCCCCCTGCTGTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS TCA 72 bp | GCTTTGGTGCTGGAACCCAGGAGAAGGAGCAGCAGATaGAGAGTAAGAAGATGCATCCTCTCAGAGGGCCTC | + |
|
Preference number: 6 (lower is better) Translates to: ALVLEPRRRSSR*RVRRCILSEGL Trigger: GAGGCCCTCTGAGAGGATGCATCTTCTTACTCTTCATCTGCTGCTCCTTCTCCTGGGTTCCAGCACCAAAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022834.7 |
||
| CDS TCA 72 bp | TGCCCACACACAGCTGGGAATTGTGTCGAAAACTGGTaGAGTGTTTGCAGGCTTGGGGCTCCTGGAGTCTCA | + |
|
Preference number: 6 (lower is better) Translates to: CPHTAGNCVENW*SVCRLGAPGVS Trigger: TGAGACTCCAGGAGCCCCAAGCCTGCAAACACTTCACCAGTTTTCGACACAATTCCCAGCTGTGTGTGGGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS CCA 72 bp | GAGTCTCATCTTTACTTCCTGCAGTGTGTCGGAGGCTaGCTCATTCACGTTTGTTCTGCCCCAGCCAACTGC | + |
|
Preference number: 6 (lower is better) Translates to: ESHLYFLQCVGG*LIHVCSAPANC Trigger: GCAGTTGGCTGGGGCAGAACAAACGTGAATGAGCCAGCCTCCGACACACTGCAGGAAGTAAAGATGAGACTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS CCA 72 bp | CGAAAACTGGTGAAGTGTTTGCAGGCTTGGGGCTCCTaGAGTCTCATCTTTACTTCCTGCAGTGTGTCGGAG | + |
|
Preference number: 6 (lower is better) Translates to: RKLVKCLQAWGS*SLIFTSCSVSE Trigger: CTCCGACACACTGCAGGAAGTAAAGATGAGACTCCAGGAGCCCCAAGCCTGCAAACACTTCACCAGTTTTCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS CAA 90 bp | TTGAAGTTGGCAGAGAGTGGGAGGGTTCCCACACCTAGGGTTAGCTaGGCTTTCTCCTTCAACTTCAGTAGCATGATGTCGTGGACAACC | + |
|
Preference number: 6 (lower is better) Translates to: LKLAESGRVPTPRVS*AFSFNFSSMMSWTT Trigger: GGTTGTCCACGACATCATGCTACTGAAGTTGAAGGAGAAAGCCAAGCTAACCCTAGGTGTGGGAACCCTCCCACTCTCTGCCAACTTCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS CAA 90 bp | TTGCCCACACACAGCTGGGAATTGTGTCGAAAACTGGTGAAGTGTTaGCAGGCTTGGGGCTCCTGGAGTCTCATCTTTACTTCCTGCAGT | + |
|
Preference number: 6 (lower is better) Translates to: LPTHSWELCRKLVKC*QAWGSWSLIFTSCS Trigger: ACTGCAGGAAGTAAAGATGAGACTCCAGGAGCCCCAAGCCTGCAAACACTTCACCAGTTTTCGACACAATTCCCAGCTGTGTGTGGGCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS CAA 72 bp | TGCATCTTCTTGGGGTTGCCCACACACAGCTGGGAATaGTGTCGAAAACTGGTGAAGTGTTTGCAGGCTTGG | + |
|
Preference number: 6 (lower is better) Translates to: CIFLGLPTHSWE*CRKLVKCLQAW Trigger: CCAAGCCTGCAAACACTTCACCAGTTTTCGACACAATTCCCAGCTGTGTGTGGGCAACCCCAAGAAGATGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS CAA 72 bp | ATCCCAGCACACAGCAGAGGTCCTCCAGAGTCTCCCTaGTATACATTTTGCATCTTCTTGGGGTTGCCCACA | + |
|
Preference number: 6 (lower is better) Translates to: IPAHSRGPPESP*YTFCIFLGLPT Trigger: TGTGGGCAACCCCAAGAAGATGCAAAATGTATACAAGGGAGACTCTGGAGGACCTCTGCTGTGTGCTGGGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS TCA 72 bp | GCTCCTAGGAGGACTGTTATAGACCTTCCCGCACAGTaGGCTGCAGTCAGCACAAAGTTTCTTCTTATCAGG | + |
|
Preference number: 6 (lower is better) Translates to: APRRTVIDLPAQ*AAVSTKFLLIR Trigger: CCTGATAAGAAGAAACTTTGTGCTGACTGCAGCTCACTGTGCGGGAAGGTCTATAACAGTCCTCCTAGGAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS GCA 72 bp | GTAATGGGAGATTCTGGTAAAGACAGCAGGGGGCTTTaGATTCCGATGTACATAGGATGCAATGCCTTGGGC | + |
|
Preference number: 6 (lower is better) Translates to: VMGDSGKDSRGL*IPMYIGCNALG Trigger: GCCCAAGGCATTGCATCCTATGTACATCGGAATGCAAAGCCCCCTGCTGTCTTTACCAGAATCTCCCATTAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS CAA 72 bp | GGAATTGTGTCGAAAACTGGTGAAGTGTTTGCAGGCTaGGGGCTCCTGGAGTCTCATCTTTACTTCCTGCAG | + |
|
Preference number: 6 (lower is better) Translates to: GIVSKTGEVFAG*GLLESHLYFLQ Trigger: CTGCAGGAAGTAAAGATGAGACTCCAGGAGCCCCAAGCCTGCAAACACTTCACCAGTTTTCGACACAATTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS CAA 90 bp | TGCTTTTCCACCTCAAGCTTCTGCCACGTGTCTTCTTTAGATGTTTaGTTATGGGCTCCTAGGAGGACTGTTATAGACCTTCCCGCACAG | + |
|
Preference number: 6 (lower is better) Translates to: CFSTSSFCHVSSLDV*LWAPRRTVIDLPAQ Trigger: CTGTGCGGGAAGGTCTATAACAGTCCTCCTAGGAGCCCATAACAAAACATCTAAAGAAGACACGTGGCAGAAGCTTGAGGTGGAAAAGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||
| CDS TCA 72 bp | ATGTCGTGGACAACCAAATTCTCATCATATTTTGGATaGAGGAATTGCTTTTCCACCTCAAGCTTCTGCCAC | + |
|
Preference number: 6 (lower is better) Translates to: MSWTTKFSSYFG*RNCFSTSSFCH Trigger: GTGGCAGAAGCTTGAGGTGGAAAAGCAATTCCTTCATCCAAAATATGATGAGAATTTGGTTGTCCACGACAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022834.7 ENSMUST00000226280.2 |
||