Pregenerated sensors for CLVS1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000041216Ensembl transcript IDs: ENSMUST00000038841.14, ENSMUST00000108348.2
Found 110 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTCCGGTGTGGGCTACCCAGACCAATGGTTGCTGACAGTCATGGCTaGGACTGGGATGGAGGACCTCATGTCAAGCAGAGCACACAGAGT | + |
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Preference number: 1 (lower is better) Translates to: VRCGLPRPMVADSHG*DWDGGPHVKQSTQS Trigger: ACTCTGTGTGCTCTGCTTGACATGAGGTCCTCCATCCCAGTCCCAGCCATGACTGTCAGCAACCATTGGTCTGGGTAGCCCACACCGGAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| 3UTR TCA 90 bp | CTCTCAGATCTTTGTCCGGTGTGGGCTACCCAGACCAATGGTTGCTaGCAGTCATGGCTGGGACTGGGATGGAGGACCTCATGTCAAGCA | + |
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Preference number: 1 (lower is better) Translates to: LSDLCPVWATQTNGC*QSWLGLGWRTSCQA Trigger: TGCTTGACATGAGGTCCTCCATCCCAGTCCCAGCCATGACTGTCAGCAACCATTGGTCTGGGTAGCCCACACCGGACAAAGATCTGAGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| 3UTR GCA 90 bp | GTCAAGCAGAGCACACAGAGTGTCTGTAGGTCAGTTGCACAGGCTTaGTGGACGGTTGCTCCACTGGAGATGTCACATGATGCTGGCTGG | + |
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Preference number: 1 (lower is better) Translates to: VKQSTQSVCRSVAQA*WTVAPLEMSHDAGW Trigger: CCAGCCAGCATCATGTGACATCTCCAGTGGAGCAACCGTCCAGCAAGCCTGTGCAACTGACCTACAGACACTCTGTGTGCTCTGCTTGAC 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| 3UTR CCA 90 bp | TGTGGGCTACCCAGACCAATGGTTGCTGACAGTCATGGCTGGGACTaGGATGGAGGACCTCATGTCAAGCAGAGCACACAGAGTGTCTGT | + |
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Preference number: 1 (lower is better) Translates to: CGLPRPMVADSHGWD*DGGPHVKQSTQSVC Trigger: ACAGACACTCTGTGTGCTCTGCTTGACATGAGGTCCTCCATCCCAGTCCCAGCCATGACTGTCAGCAACCATTGGTCTGGGTAGCCCACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| 3UTR TCA 90 bp | TTTCATCTTGCATTCTTGGTCCTCTTTAGCTTGGTACTTACATGCTaGTCCATCCTTAAGGGTCTTTCTGTGAGATTTGAATGCCTGCCC | + |
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Preference number: 1 (lower is better) Translates to: FHLAFLVLFSLVLTC*SILKGLSVRFECLP Trigger: GGGCAGGCATTCAAATCTCACAGAAAGACCCTTAAGGATGGATCAGCATGTAAGTACCAAGCTAAAGAGGACCAAGAATGCAAGATGAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| 3UTR TCA 90 bp | TTCAAACTGCCTCTTTGTCTTAAAAAGCAATTCATGAAAGTCAGCTaGTGGTCTGACAAGCAACACGATGTCCAAATCATTCTTGTAGGA | + |
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Preference number: 1 (lower is better) Translates to: FKLPLCLKKQFMKVS*WSDKQHDVQIILVG Trigger: TCCTACAAGAATGATTTGGACATCGTGTTGCTTGTCAGACCATCAGCTGACTTTCATGAATTGCTTTTTAAGACAAAGAGGCAGTTTGAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| 3UTR TCA 90 bp | GTGGCCATAGTCAGTAATGTTTTGTGTTTATGGCGGGAAGTAAGTTaGATTGGTTTCCTCTTTTCTTTAGGCTGTTCAGCTAGTAAATCA | + |
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Preference number: 1 (lower is better) Translates to: VAIVSNVLCLWREVS*IGFLFSLGCSASKS Trigger: TGATTTACTAGCTGAACAGCCTAAAGAAAAGAGGAAACCAATTCAACTTACTTCCCGCCATAAACACAAAACATTACTGACTATGGCCAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| 3UTR GCA 90 bp | CCTGCTGGGTTTAGTTCTCCTCTATACTACATATACATAGCGAAATaGAAACCATGTGTTCTCATTGTTAAACTATCACCTTACATCCAT | + |
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Preference number: 1 (lower is better) Translates to: PAGFSSPLYYIYIAK*KPCVLIVKLSPYIH Trigger: ATGGATGTAAGGTGATAGTTTAACAATGAGAACACATGGTTTGCATTTCGCTATGTATATGTAGTATAGAGGAGAACTAAACCCAGCAGG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| 3UTR CAA 90 bp | GCGTCTCTCAGATCTTTGTCCGGTGTGGGCTACCCAGACCAATGGTaGCTGACAGTCATGGCTGGGACTGGGATGGAGGACCTCATGTCA | + |
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Preference number: 2 (lower is better) Translates to: ASLRSLSGVGYPDQW*LTVMAGTGMEDLMS Trigger: TGACATGAGGTCCTCCATCCCAGTCCCAGCCATGACTGTCAGCAACCATTGGTCTGGGTAGCCCACACCGGACAAAGATCTGAGAGACGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| 3UTR-3UTR GCA 90 bp | GGCTGGGACTGGGATGGAGGACCTCATGTCAAGCAGAGCACACAGAGTGTCTGTTCAGTTGCACAGGCTTaGTGGACGGTTGCTCCACTG | + |
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Preference number: 2 (lower is better) Translates to: GWDWDGGPHVKQSTQSVCSVAQA*WTVAPL Trigger: CAGTGGAGCAACCGTCCAGCAAGCCTGTGCAACTGA...ACAGACACTCTGTGTGCTCTGCTTGACATGAGGTCCTCCATCCCAGTCCCAGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| 3UTR-3UTR TCA 90 bp | TCTGTGAGATTTGAATGCCTGCCCCCTCAGGGCCTTTCTCCACAGGTAATAGGATTCATGAAAGTCAGCTaGTGGTCTGACAAGCAACAC | + |
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Preference number: 2 (lower is better) Translates to: SVRFECLPPQGLSPQVIGFMKVS*WSDKQH Trigger: GTGTTGCTTGTCAGACCATCAGCTGACTTTCATGAA...TCCTATTACCTGTGGAGAAAGGCCCTGAGGGGGCAGGCATTCAAATCTCACAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| 3UTR-3UTR TCA 90 bp | TGGGATCCATTTCTAAGGAGAATGGATAAGGAAGTAGGCTGGTCTTTGGCATTTTCTTTCTGTGAGATTTaGATGCCTGCCCCCTCAGGG | + |
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Preference number: 2 (lower is better) Translates to: WDPFLRRMDKEVGWSLAFSFCEI*MPAPSG Trigger: CCCTGAGGGGGCAGGCATTCAAATCTCACAGAAAGA...AAATGCCAAAGACCAGCCTACTTCCTTATCCATTCTCCTTAGAAATGGATCCCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| 3UTR-3UTR GCA 90 bp | GGTCTTTGGCATTTCATCTTGCATTCTTGGTCCTCTTTAGCTTGGTACTTACATTCAGTTGCACAGGCTTaGTGGACGGTTGCTCCACTG | + |
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Preference number: 2 (lower is better) Translates to: GLWHFILHSWSSLAWYLHSVAQA*WTVAPL Trigger: CAGTGGAGCAACCGTCCAGCAAGCCTGTGCAACTGA...ATGTAAGTACCAAGCTAAAGAGGACCAAGAATGCAAGATGAAATGCCAAAGACC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| 3UTR-3UTR CCA 90 bp | GTGTTTATGGCGGGAAGTAAGTTGAATTGGTTTCCTCTTTTCTTTAGGCTGTTCAGTCATGGCTGGGACTaGGATGGAGGACCTCATGTC | + |
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Preference number: 2 (lower is better) Translates to: VFMAGSKLNWFPLFFRLFSHGWD*DGGPHV Trigger: GACATGAGGTCCTCCATCCCAGTCCCAGCCATGACT...GAACAGCCTAAAGAAAAGAGGAAACCAATTCAACTTACTTCCCGCCATAAACAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| 3UTR-3UTR CCA 90 bp | TGGGATCCATTTCTAAGGAGAATGGATAAGGAAGTAGGCTGGTCTTTGGCATTTGATCTTTGTCCGGTGTaGGCTACCCAGACCAATGGT | + |
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Preference number: 2 (lower is better) Translates to: WDPFLRRMDKEVGWSLAFDLCPV*ATQTNG Trigger: ACCATTGGTCTGGGTAGCCCACACCGGACAAAGATC...AAATGCCAAAGACCAGCCTACTTCCTTATCCATTCTCCTTAGAAATGGATCCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| 3UTR-3UTR TCA 90 bp | GTGTTTATGGCGGGAAGTAAGTTGAATTGGTTTCCTCTTTTCTTTAGGCTGTTCTCTTTCTGTGAGATTTaGATGCCTGCCCCCTCAGGG | + |
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Preference number: 2 (lower is better) Translates to: VFMAGSKLNWFPLFFRLFSFCEI*MPAPSG Trigger: CCCTGAGGGGGCAGGCATTCAAATCTCACAGAAAGA...GAACAGCCTAAAGAAAAGAGGAAACCAATTCAACTTACTTCCCGCCATAAACAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| 3UTR-3UTR TCA 90 bp | GATTCTAAATCTTGCCTTGTGAAAAGCCAGCAGTACCGTTACTTTTGCAAGTGTTTGCTGTTCTCTGTCTaGCTTCCTATGCATGGGGGC | + |
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Preference number: 2 (lower is better) Translates to: DSKSCLVKSQQYRYFCKCLLFSV*LPMHGG Trigger: GCCCCCATGCATAGGAAGTCAGACAGAGAACAGCAA...ACACTTGCAAAAGTAACGGTACTGCTGGCTTTTCACAAGGCAAGATTTAGAATC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| 3UTR-3UTR GCA 90 bp | GATTCTAAATCTTGCCTTGTGAAAAGCCAGCAGTACCGTTACTTTTGCAAGTGTTCTGTGAGATTTGAATaGCTGCCCCCTCAGGGCCTT | + |
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Preference number: 2 (lower is better) Translates to: DSKSCLVKSQQYRYFCKCSVRFE*LPPQGL Trigger: AAGGCCCTGAGGGGGCAGGCATTCAAATCTCACAGA...ACACTTGCAAAAGTAACGGTACTGCTGGCTTTTCACAAGGCAAGATTTAGAATC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| 3UTR-3UTR GCA 90 bp | AGTAACCCTCGGTTACCTGCTGGGTTTAGTTCTCCTCTATACTACATATACATATCTGTGAGATTTGAATaGCTGCCCCCTCAGGGCCTT | + |
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Preference number: 2 (lower is better) Translates to: SNPRLPAGFSSPLYYIYISVRFE*LPPQGL Trigger: AAGGCCCTGAGGGGGCAGGCATTCAAATCTCACAGA...TATGTATATGTAGTATAGAGGAGAACTAAACCCAGCAGGTAACCGAGGGTTACT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| 3UTR-3UTR CCA 90 bp | GGTCTTTGGCATTTCATCTTGCATTCTTGGTCCTCTTTAGCTTGGTACTTACATGGCTACCCAGACCAATaGTTGCTGACAGTCATGGCT | + |
|
Preference number: 2 (lower is better) Translates to: GLWHFILHSWSSLAWYLHGYPDQ*LLTVMA Trigger: AGCCATGACTGTCAGCAACCATTGGTCTGGGTAGCC...ATGTAAGTACCAAGCTAAAGAGGACCAAGAATGCAAGATGAAATGCCAAAGACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| 3UTR-3UTR GCA 90 bp | GGAGCTACTGCTGCTGGGGTTCAGCACTACATTAAACTTGCTGATGTGTCTGCACATTTCATCTTAATTTaGAAAACCTGGAGAGGGTTC | + |
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Preference number: 2 (lower is better) Translates to: GATAAGVQHYIKLADVSAHFILI*KTWRGF Trigger: GAACCCTCTCCAGGTTTTGCAAATTAAGATGAAATG...TGCAGACACATCAGCAAGTTTAATGTAGTGCTGAACCCCAGCAGCAGTAGCTCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| 3UTR-3UTR GCA 90 bp | AAACAGAGGAACTTACTGACAAAGGCAATACAATCCAGTGTTCATGTAGTAACCCTGTCTGACTTCCTATaGATGGGGGCTGGGATCCAT | + |
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Preference number: 2 (lower is better) Translates to: KQRNLLTKAIQSSVHVVTLSDFL*MGAGIH Trigger: ATGGATCCCAGCCCCCATGCATAGGAAGTCAGACAG...GGTTACTACATGAACACTGGATTGTATTGCCTTTGTCAGTAAGTTCCTCTGTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| 3UTR-3UTR TCA 90 bp | TGGGATCCATTTCTAAGGAGAATGGATAAGGAAGTAGGCTGGTCTTTGGCATTTGAGAGGGTTCCTGTGTaGGTCTTTAGAGTGATGTAT | + |
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Preference number: 2 (lower is better) Translates to: WDPFLRRMDKEVGWSLAFERVPV*VFRVMY Trigger: ATACATCACTCTAAAGACTCACACAGGAACCCTCTC...AAATGCCAAAGACCAGCCTACTTCCTTATCCATTCTCCTTAGAAATGGATCCCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| 3UTR-3UTR CCA 90 bp | GGTCTTTGGCATTTCATCTTGCATTCTTGGTCCTCTTTAGCTTGGTACTTACATAGGACTGGAAATTATTaGAGCTACTGCTGCTGGGGT | + |
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Preference number: 2 (lower is better) Translates to: GLWHFILHSWSSLAWYLHRTGNY*SYCCWG Trigger: ACCCCAGCAGCAGTAGCTCCAATAATTTCCAGTCCT...ATGTAAGTACCAAGCTAAAGAGGACCAAGAATGCAAGATGAAATGCCAAAGACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| 3UTR-3UTR CCA 90 bp | AGTAACCCTCGGTTACCTGCTGGGTTTAGTTCTCCTCTATACTACATATACATAAGGACTGGAAATTATTaGAGCTACTGCTGCTGGGGT | + |
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Preference number: 2 (lower is better) Translates to: SNPRLPAGFSSPLYYIYIRTGNY*SYCCWG Trigger: ACCCCAGCAGCAGTAGCTCCAATAATTTCCAGTCCT...TATGTATATGTAGTATAGAGGAGAACTAAACCCAGCAGGTAACCGAGGGTTACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| 3UTR-3UTR CCA 90 bp | TGGGATCCATTTCTAAGGAGAATGGATAAGGAAGTAGGCTGGTCTTTGGCATTTTGGTCCTCTTTAGCTTaGTACTTACATGCTGATCCA | + |
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Preference number: 2 (lower is better) Translates to: WDPFLRRMDKEVGWSLAFWSSLA*YLHADP Trigger: TGGATCAGCATGTAAGTACCAAGCTAAAGAGGACCA...AAATGCCAAAGACCAGCCTACTTCCTTATCCATTCTCCTTAGAAATGGATCCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| 3UTR-3UTR TCA 90 bp | AAACAGAGGAACTTACTGACAAAGGCAATACAATCCAGTGTTCATGTAGTAACCGAGAGGGTTCCTGTGTaGGTCTTTAGAGTGATGTAT | + |
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Preference number: 2 (lower is better) Translates to: KQRNLLTKAIQSSVHVVTERVPV*VFRVMY Trigger: ATACATCACTCTAAAGACTCACACAGGAACCCTCTC...GGTTACTACATGAACACTGGATTGTATTGCCTTTGTCAGTAAGTTCCTCTGTTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| 3UTR-3UTR CCA 90 bp | GATTCTAAATCTTGCCTTGTGAAAAGCCAGCAGTACCGTTACTTTTGCAAGTGTTGGTCCTCTTTAGCTTaGTACTTACATGCTGATCCA | + |
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Preference number: 2 (lower is better) Translates to: DSKSCLVKSQQYRYFCKCWSSLA*YLHADP Trigger: TGGATCAGCATGTAAGTACCAAGCTAAAGAGGACCA...ACACTTGCAAAAGTAACGGTACTGCTGGCTTTTCACAAGGCAAGATTTAGAATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| 3UTR-3UTR CCA 90 bp | GATTCTAAATCTTGCCTTGTGAAAAGCCAGCAGTACCGTTACTTTTGCAAGTGTTTTGATCTTCAGCATTaGAGGGAGACAGAGAAGAGA | + |
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Preference number: 2 (lower is better) Translates to: DSKSCLVKSQQYRYFCKCFDLQH*RETEKR Trigger: TCTCTTCTCTGTCTCCCTCCAATGCTGAAGATCAAA...ACACTTGCAAAAGTAACGGTACTGCTGGCTTTTCACAAGGCAAGATTTAGAATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| 3UTR-3UTR TCA 90 bp | AGTTCTCCTCTATACTACATATACATAGCGAAATGCAAACCATGTGTTCTCATTTTAAGGGTCTTTCTGTaGGATTTGAATGCCTGCCCC | + |
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Preference number: 2 (lower is better) Translates to: SSPLYYIYIAKCKPCVLILRVFL*DLNACP Trigger: GGGGCAGGCATTCAAATCTCACAGAAAGACCCTTAA...AATGAGAACACATGGTTTGCATTTCGCTATGTATATGTAGTATAGAGGAGAACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| 3UTR-3UTR CCA 90 bp | AGTAACCCTCGGTTACCTGCTGGGTTTAGTTCTCCTCTATACTACATATACATAGATAAGGAAGTAGGCTaGTCTTTGGCATTTCATCTT | + |
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Preference number: 2 (lower is better) Translates to: SNPRLPAGFSSPLYYIYIDKEVG*SLAFHL Trigger: AAGATGAAATGCCAAAGACCAGCCTACTTCCTTATC...TATGTATATGTAGTATAGAGGAGAACTAAACCCAGCAGGTAACCGAGGGTTACT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| 3UTR-3UTR GCA 90 bp | GTGTTTATGGCGGGAAGTAAGTTGAATTGGTTTCCTCTTTTCTTTAGGCTGTTCTCCTTTTTACATAAATaGCTTTCTTCATCCCCGTCA | + |
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Preference number: 2 (lower is better) Translates to: VFMAGSKLNWFPLFFRLFSFLHK*LSSSPS Trigger: TGACGGGGATGAAGAAAGGCATTTATGTAAAAAGGA...GAACAGCCTAAAGAAAAGAGGAAACCAATTCAACTTACTTCCCGCCATAAACAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| 3UTR-3UTR GCA 90 bp | GGTCTTTGGCATTTCATCTTGCATTCTTGGTCCTCTTTAGCTTGGTACTTACATTTGAAGTATATTTGCTaGCAAAAATATGAGGGGAGA | + |
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Preference number: 2 (lower is better) Translates to: GLWHFILHSWSSLAWYLHLKYIC*QKYEGR Trigger: TCTCCCCTCATATTTTTGGCAGCAAATATACTTCAA...ATGTAAGTACCAAGCTAAAGAGGACCAAGAATGCAAGATGAAATGCCAAAGACC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| 3UTR-3UTR GCA 90 bp | AGTTCTCCTCTATACTACATATACATAGCGAAATGCAAACCATGTGTTCTCATTTCCTTTTTACATAAATaGCTTTCTTCATCCCCGTCA | + |
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Preference number: 2 (lower is better) Translates to: SSPLYYIYIAKCKPCVLISFLHK*LSSSPS Trigger: TGACGGGGATGAAGAAAGGCATTTATGTAAAAAGGA...AATGAGAACACATGGTTTGCATTTCGCTATGTATATGTAGTATAGAGGAGAACT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| 3UTR TCA 72 bp | CTTTGTCCGGTGTGGGCTACCCAGACCAATGGTTGCTaGCAGTCATGGCTGGGACTGGGATGGAGGACCTCA | + |
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Preference number: 3 (lower is better) Translates to: LCPVWATQTNGC*QSWLGLGWRTS Trigger: TGAGGTCCTCCATCCCAGTCCCAGCCATGACTGTCAGCAACCATTGGTCTGGGTAGCCCACACCGGACAAAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| 3UTR CCA 72 bp | GGGCTACCCAGACCAATGGTTGCTGACAGTCATGGCTaGGACTGGGATGGAGGACCTCATGTCAAGCAGAGC | + |
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Preference number: 3 (lower is better) Translates to: GLPRPMVADSHG*DWDGGPHVKQS Trigger: GCTCTGCTTGACATGAGGTCCTCCATCCCAGTCCCAGCCATGACTGTCAGCAACCATTGGTCTGGGTAGCCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| 3UTR CCA 72 bp | CCCAGACCAATGGTTGCTGACAGTCATGGCTGGGACTaGGATGGAGGACCTCATGTCAAGCAGAGCACACAG | + |
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Preference number: 3 (lower is better) Translates to: PRPMVADSHGWD*DGGPHVKQSTQ Trigger: CTGTGTGCTCTGCTTGACATGAGGTCCTCCATCCCAGTCCCAGCCATGACTGTCAGCAACCATTGGTCTGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| 3UTR GCA 72 bp | AGCACACAGAGTGTCTGTAGGTCAGTTGCACAGGCTTaGTGGACGGTTGCTCCACTGGAGATGTCACATGAT | + |
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Preference number: 3 (lower is better) Translates to: STQSVCRSVAQA*WTVAPLEMSHD Trigger: ATCATGTGACATCTCCAGTGGAGCAACCGTCCAGCAAGCCTGTGCAACTGACCTACAGACACTCTGTGTGCT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| 3UTR-3UTR CAA 90 bp | GTGTTTATGGCGGGAAGTAAGTTGAATTGGTTTCCTCTTTTCTTTAGGCTGTTCTACCCAGACCAATGGTaGCTGACAGTCATGGCTGGG | + |
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Preference number: 3 (lower is better) Translates to: VFMAGSKLNWFPLFFRLFYPDQW*LTVMAG Trigger: CCCAGCCATGACTGTCAGCAACCATTGGTCTGGGTA...GAACAGCCTAAAGAAAAGAGGAAACCAATTCAACTTACTTCCCGCCATAAACAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| 3UTR-3UTR CAA 90 bp | GATTCTAAATCTTGCCTTGTGAAAAGCCAGCAGTACCGTTACTTTTGCAAGTGTTACCCAGACCAATGGTaGCTGACAGTCATGGCTGGG | + |
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Preference number: 3 (lower is better) Translates to: DSKSCLVKSQQYRYFCKCYPDQW*LTVMAG Trigger: CCCAGCCATGACTGTCAGCAACCATTGGTCTGGGTA...ACACTTGCAAAAGTAACGGTACTGCTGGCTTTTCACAAGGCAAGATTTAGAATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| 3UTR-3UTR CAA 90 bp | CTCCCCTTTGCTGTTCTCTGTCTGACTTCCTATGCATGGGGGCTGGGATCCATTGACAAAGGGACTTATTaGATAGCAAGTTTTTGCTGT | + |
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Preference number: 3 (lower is better) Translates to: LPFAVLCLTSYAWGLGSIDKGTY*IASFCC Trigger: ACAGCAAAAACTTGCTATCAAATAAGTCCCTTTGTC...AATGGATCCCAGCCCCCATGCATAGGAAGTCAGACAGAGAACAGCAAAGGGGAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| 3UTR TCA 72 bp | GCATTCTTGGTCCTCTTTAGCTTGGTACTTACATGCTaGTCCATCCTTAAGGGTCTTTCTGTGAGATTTGAA | + |
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Preference number: 3 (lower is better) Translates to: AFLVLFSLVLTC*SILKGLSVRFE Trigger: TTCAAATCTCACAGAAAGACCCTTAAGGATGGATCAGCATGTAAGTACCAAGCTAAAGAGGACCAAGAATGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| 3UTR CCA 72 bp | TGGCATTTCATCTTGCATTCTTGGTCCTCTTTAGCTTaGTACTTACATGCTGATCCATCCTTAAGGGTCTTT | + |
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Preference number: 3 (lower is better) Translates to: WHFILHSWSSLA*YLHADPSLRVF Trigger: AAAGACCCTTAAGGATGGATCAGCATGTAAGTACCAAGCTAAAGAGGACCAAGAATGCAAGATGAAATGCCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| 3UTR-3UTR CAA 90 bp | AGTAACCCTCGGTTACCTGCTGGGTTTAGTTCTCCTCTATACTACATATACATAATGGCGGGAAGTAAGTaGAATTGGTTTCCTCTTTTC | + |
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Preference number: 3 (lower is better) Translates to: SNPRLPAGFSSPLYYIYIMAGSK*NWFPLF Trigger: GAAAAGAGGAAACCAATTCAACTTACTTCCCGCCAT...TATGTATATGTAGTATAGAGGAGAACTAAACCCAGCAGGTAACCGAGGGTTACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| 3UTR-3UTR CAA 90 bp | GGTCTTTGGCATTTCATCTTGCATTCTTGGTCCTCTTTAGCTTGGTACTTACATAGCACTACATTAAACTaGCTGATGTGTCTGCACATT | + |
|
Preference number: 3 (lower is better) Translates to: GLWHFILHSWSSLAWYLHSTTLN*LMCLHI Trigger: AATGTGCAGACACATCAGCAAGTTTAATGTAGTGCT...ATGTAAGTACCAAGCTAAAGAGGACCAAGAATGCAAGATGAAATGCCAAAGACC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
||
| 3UTR-3UTR CAA 90 bp | GTGTTTATGGCGGGAAGTAAGTTGAATTGGTTTCCTCTTTTCTTTAGGCTGTTCCTTTGGCATTTCATCTaGCATTCTTGGTCCTCTTTA | + |
|
Preference number: 3 (lower is better) Translates to: VFMAGSKLNWFPLFFRLFLWHFI*HSWSSL Trigger: TAAAGAGGACCAAGAATGCAAGATGAAATGCCAAAG...GAACAGCCTAAAGAAAAGAGGAAACCAATTCAACTTACTTCCCGCCATAAACAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
||
| 3UTR-3UTR CAA 90 bp | GATTCTAAATCTTGCCTTGTGAAAAGCCAGCAGTACCGTTACTTTTGCAAGTGTCTTTGGCATTTCATCTaGCATTCTTGGTCCTCTTTA | + |
|
Preference number: 3 (lower is better) Translates to: DSKSCLVKSQQYRYFCKCLWHFI*HSWSSL Trigger: TAAAGAGGACCAAGAATGCAAGATGAAATGCCAAAG...ACACTTGCAAAAGTAACGGTACTGCTGGCTTTTCACAAGGCAAGATTTAGAATC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
||
| 3UTR-3UTR CAA 90 bp | AAACAGAGGAACTTACTGACAAAGGCAATACAATCCAGTGTTCATGTAGTAACCAGCACTACATTAAACTaGCTGATGTGTCTGCACATT | + |
|
Preference number: 3 (lower is better) Translates to: KQRNLLTKAIQSSVHVVTSTTLN*LMCLHI Trigger: AATGTGCAGACACATCAGCAAGTTTAATGTAGTGCT...GGTTACTACATGAACACTGGATTGTATTGCCTTTGTCAGTAAGTTCCTCTGTTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
||
| 3UTR TCA 72 bp | TTTTCAAACTGCCTCTTTGTCTTAAAAAGCAATTCATaGAAGTCAGCTGATGGTCTGACAAGCAACACGATG | + |
|
Preference number: 3 (lower is better) Translates to: FSNCLFVLKSNS*KSADGLTSNTM Trigger: CATCGTGTTGCTTGTCAGACCATCAGCTGACTTTCATGAATTGCTTTTTAAGACAAAGAGGCAGTTTGAAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
||
| 3UTR CAA 72 bp | GTGTCTGTAGGTCAGTTGCACAGGCTTGCTGGACGGTaGCTCCACTGGAGATGTCACATGATGCTGGCTGGC | + |
|
Preference number: 4 (lower is better) Translates to: VSVGQLHRLAGR*LHWRCHMMLAG Trigger: GCCAGCCAGCATCATGTGACATCTCCAGTGGAGCAACCGTCCAGCAAGCCTGTGCAACTGACCTACAGACAC 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
||
| 3UTR CAA 72 bp | AGATCTTTGTCCGGTGTGGGCTACCCAGACCAATGGTaGCTGACAGTCATGGCTGGGACTGGGATGGAGGAC | + |
|
Preference number: 4 (lower is better) Translates to: RSLSGVGYPDQW*LTVMAGTGMED Trigger: GTCCTCCATCCCAGTCCCAGCCATGACTGTCAGCAACCATTGGTCTGGGTAGCCCACACCGGACAAAGATCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
||
| CDS-3UTR TCA 90 bp | GGCTGGGACTGGGATGGAGGACCTCATGTCAAGCAGAGCACACAGAGTGTCTGTAAGGCATCGGCTTGGTaGAACTTCCTGGCTCGAAGA | + |
|
Preference number: 4 (lower is better) Translates to: GWDWDGGPHVKQSTQSVCKASAW*NFLARR Trigger: TCTTCGAGCCAGGAAGTTTCACCAAGCCGATGCCTT...ACAGACACTCTGTGTGCTCTGCTTGACATGAGGTCCTCCATCCCAGTCCCAGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
||
| CDS-3UTR GCA 90 bp | AAGCAGAGCACACAGAGTGTCTGTAGGTCAGTTGCACAGGCTTGCTGGACGGTTGCAGGAAAGCTGTCCTaGAGCCCTTCAATGGCCAGT | + |
|
Preference number: 4 (lower is better) Translates to: KQSTQSVCRSVAQACWTVAGKLS*SPSMAS Trigger: ACTGGCCATTGAAGGGCTGCAGGACAGCTTTCCTGC...AACCGTCCAGCAAGCCTGTGCAACTGACCTACAGACACTCTGTGTGCTCTGCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
||
| 3UTR CAA 72 bp | ATGTCAAGCAGAGCACACAGAGTGTCTGTAGGTCAGTaGCACAGGCTTGCTGGACGGTTGCTCCACTGGAGA | + |
|
Preference number: 4 (lower is better) Translates to: MSSRAHRVSVGQ*HRLAGRLLHWR Trigger: TCTCCAGTGGAGCAACCGTCCAGCAAGCCTGTGCAACTGACCTACAGACACTCTGTGTGCTCTGCTTGACAT 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
||
| CDS-3UTR TCA 90 bp | GGAGCTACTGCTGCTGGGGTTCAGCACTACATTAAACTTGCTGATGTGTCTGCAACTGGGCCAGGAGTCTaGAGGCATCGGCTTGGTGAA | + |
|
Preference number: 4 (lower is better) Translates to: GATAAGVQHYIKLADVSATGPGV*RHRLGE Trigger: TTCACCAAGCCGATGCCTTCAGACTCCTGGCCCAGT...TGCAGACACATCAGCAAGTTTAATGTAGTGCTGAACCCCAGCAGCAGTAGCTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
||
| CDS-3UTR TCA 90 bp | TCTGTGAGATTTGAATGCCTGCCCCCTCAGGGCCTTTCTCCACAGGTAATAGGATTCAGCTGGCGGTACTaGAAGTACTGGGCCAGGAGT | + |
|
Preference number: 4 (lower is better) Translates to: SVRFECLPPQGLSPQVIGFSWRY*KYWARS Trigger: ACTCCTGGCCCAGTACTTTCAGTACCGCCAGCTGAA...TCCTATTACCTGTGGAGAAAGGCCCTGAGGGGGCAGGCATTCAAATCTCACAGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
||
| CDS-3UTR GCA 90 bp | TCTGTGAGATTTGAATGCCTGCCCCCTCAGGGCCTTTCTCCACAGGTAATAGGAGCAGGAAAGCTGTCCTaGAGCCCTTCAATGGCCAGT | + |
|
Preference number: 4 (lower is better) Translates to: SVRFECLPPQGLSPQVIGAGKLS*SPSMAS Trigger: ACTGGCCATTGAAGGGCTGCAGGACAGCTTTCCTGC...TCCTATTACCTGTGGAGAAAGGCCCTGAGGGGGCAGGCATTCAAATCTCACAGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
||
| CDS-3UTR CCA 90 bp | GGCTGGGACTGGGATGGAGGACCTCATGTCAAGCAGAGCACACAGAGTGTCTGTGCAAATGCGTCATCTTaGCCAAATCTCCTTCCCAAG | + |
|
Preference number: 4 (lower is better) Translates to: GWDWDGGPHVKQSTQSVCANASS*PNLLPK Trigger: CTTGGGAAGGAGATTTGGCCAAGATGACGCATTTGC...ACAGACACTCTGTGTGCTCTGCTTGACATGAGGTCCTCCATCCCAGTCCCAGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
||
| CDS-3UTR TCA 90 bp | TTTAAAAGCGTCTCTCAGATCTTTGTCCGGTGTGGGCTACCCAGACCAATGGTTACTGGGCCAGGAGTCTaGAGGCATCGGCTTGGTGAA | + |
|
Preference number: 4 (lower is better) Translates to: FKSVSQIFVRCGLPRPMVTGPGV*RHRLGE Trigger: TTCACCAAGCCGATGCCTTCAGACTCCTGGCCCAGT...AACCATTGGTCTGGGTAGCCCACACCGGACAAAGATCTGAGAGACGCTTTTAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
||
| CDS-3UTR CCA 90 bp | TCTGTGAGATTTGAATGCCTGCCCCCTCAGGGCCTTTCTCCACAGGTAATAGGAGGCTGGTTGACAAAATaGACGCCTCCAAAGCGAGCA | + |
|
Preference number: 4 (lower is better) Translates to: SVRFECLPPQGLSPQVIGGWLTK*TPPKRA Trigger: TGCTCGCTTTGGAGGCGTCCATTTTGTCAACCAGCC...TCCTATTACCTGTGGAGAAAGGCCCTGAGGGGGCAGGCATTCAAATCTCACAGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
||
| CDS-3UTR TCA 90 bp | AAGCAGAGCACACAGAGTGTCTGTAGGTCAGTTGCACAGGCTTGCTGGACGGTTCAAGTGCTTAAGCTCTaGGGTGAGGGAAGAACAGAA | + |
|
Preference number: 4 (lower is better) Translates to: KQSTQSVCRSVAQACWTVQVLKL*GEGRTE Trigger: TTCTGTTCTTCCCTCACCTCAGAGCTTAAGCACTTG...AACCGTCCAGCAAGCCTGTGCAACTGACCTACAGACACTCTGTGTGCTCTGCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
||
| CDS-3UTR TCA 90 bp | GGAGCTACTGCTGCTGGGGTTCAGCACTACATTAAACTTGCTGATGTGTCTGCATGTACCAGGGCTGGTTaGCAAAATGGACGCCTCCAA | + |
|
Preference number: 4 (lower is better) Translates to: GATAAGVQHYIKLADVSACTRAG*QNGRLQ Trigger: TTGGAGGCGTCCATTTTGTCAACCAGCCCTGGTACA...TGCAGACACATCAGCAAGTTTAATGTAGTGCTGAACCCCAGCAGCAGTAGCTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
||
| CDS-3UTR GCA 90 bp | AAGCAGAGCACACAGAGTGTCTGTAGGTCAGTTGCACAGGCTTGCTGGACGGTTAATCTCCTTCCCAAGTaGTTAAGCTCTGAGGTGAGG | + |
|
Preference number: 4 (lower is better) Translates to: KQSTQSVCRSVAQACWTVNLLPK*LSSEVR Trigger: CCTCACCTCAGAGCTTAAGCACTTGGGAAGGAGATT...AACCGTCCAGCAAGCCTGTGCAACTGACCTACAGACACTCTGTGTGCTCTGCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
||
| CDS-3UTR GCA 90 bp | GGCTGGGACTGGGATGGAGGACCTCATGTCAAGCAGAGCACACAGAGTGTCTGTGCAAGAGAATCTTCCTaGCATAGTGGTCACGATTTT | + |
|
Preference number: 4 (lower is better) Translates to: GWDWDGGPHVKQSTQSVCARESS*HSGHDF Trigger: AAAATCGTGACCACTATGGCAGGAAGATTCTCTTGC...ACAGACACTCTGTGTGCTCTGCTTGACATGAGGTCCTCCATCCCAGTCCCAGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
||
| CDS-3UTR CCA 90 bp | TTTAAAAGCGTCTCTCAGATCTTTGTCCGGTGTGGGCTACCCAGACCAATGGTTAGTGTGTACAGGGCGTaGATGTACCAGGGCTGGTTG | + |
|
Preference number: 4 (lower is better) Translates to: FKSVSQIFVRCGLPRPMVSVYRA*MYQGWL Trigger: CAACCAGCCCTGGTACATCCACGCCCTGTACACACT...AACCATTGGTCTGGGTAGCCCACACCGGACAAAGATCTGAGAGACGCTTTTAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
||
| CDS-3UTR CCA 90 bp | GGCTGGGACTGGGATGGAGGACCTCATGTCAAGCAGAGCACACAGAGTGTCTGTTGTGTTTCACATGCATaGCATTGTAGGAAGTATGGG | + |
|
Preference number: 4 (lower is better) Translates to: GWDWDGGPHVKQSTQSVCCVSHA*HCRKYG Trigger: CCCATACTTCCTACAATGCCATGCATGTGAAACACA...ACAGACACTCTGTGTGCTCTGCTTGACATGAGGTCCTCCATCCCAGTCCCAGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
||
| CDS-3UTR CCA 90 bp | AAGCAGAGCACACAGAGTGTCTGTAGGTCAGTTGCACAGGCTTGCTGGACGGTTACTGAGATCTTTTCATaGGCTTGGGTGAGCACTCTC | + |
|
Preference number: 4 (lower is better) Translates to: KQSTQSVCRSVAQACWTVTEIFS*AWVSTL Trigger: GAGAGTGCTCACCCAAGCCCATGAAAAGATCTCAGT...AACCGTCCAGCAAGCCTGTGCAACTGACCTACAGACACTCTGTGTGCTCTGCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
||
| CDS-3UTR CCA 90 bp | CTCCCCTTTGCTGTTCTCTGTCTGACTTCCTATGCATGGGGGCTGGGATCCATTACTGAGATCTTTTCATaGGCTTGGGTGAGCACTCTC | + |
|
Preference number: 4 (lower is better) Translates to: LPFAVLCLTSYAWGLGSITEIFS*AWVSTL Trigger: GAGAGTGCTCACCCAAGCCCATGAAAAGATCTCAGT...AATGGATCCCAGCCCCCATGCATAGGAAGTCAGACAGAGAACAGCAAAGGGGAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
||
| CDS-3UTR CCA 90 bp | GGAGCTACTGCTGCTGGGGTTCAGCACTACATTAAACTTGCTGATGTGTCTGCATGGATGTACCAGGGCTaGTTGACAAAATGGACGCCT | + |
|
Preference number: 4 (lower is better) Translates to: GATAAGVQHYIKLADVSAWMYQG*LTKWTP Trigger: AGGCGTCCATTTTGTCAACCAGCCCTGGTACATCCA...TGCAGACACATCAGCAAGTTTAATGTAGTGCTGAACCCCAGCAGCAGTAGCTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
||
| CDS-3UTR CCA 90 bp | GGAGCTACTGCTGCTGGGGTTCAGCACTACATTAAACTTGCTGATGTGTCTGCAAGAGCCAGCAGTGGCTaGGTGTTCTCATTTTCTCCT | + |
|
Preference number: 4 (lower is better) Translates to: GATAAGVQHYIKLADVSARASSG*VFSFSP Trigger: AGGAGAAAATGAGAACACCCAGCCACTGCTGGCTCT...TGCAGACACATCAGCAAGTTTAATGTAGTGCTGAACCCCAGCAGCAGTAGCTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
||
| CDS-3UTR TCA 90 bp | GGAGCTACTGCTGCTGGGGTTCAGCACTACATTAAACTTGCTGATGTGTCTGCAGCTTGGATGCTTGCTTaGAGGAAAAGTTGCTCCAGT | + |
|
Preference number: 4 (lower is better) Translates to: GATAAGVQHYIKLADVSAAWMLA*RKSCSS Trigger: ACTGGAGCAACTTTTCCTTCAAGCAAGCATCCAAGC...TGCAGACACATCAGCAAGTTTAATGTAGTGCTGAACCCCAGCAGCAGTAGCTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
||
| CDS-3UTR GCA 90 bp | TGGGATCCATTTCTAAGGAGAATGGATAAGGAAGTAGGCTGGTCTTTGGCATTTGGACTGAGCCCAGCCTaGAAATGCGTCATCTTGGCC | + |
|
Preference number: 4 (lower is better) Translates to: WDPFLRRMDKEVGWSLAFGLSPA*KCVILA Trigger: GGCCAAGATGACGCATTTGCAGGCTGGGCTCAGTCC...AAATGCCAAAGACCAGCCTACTTCCTTATCCATTCTCCTTAGAAATGGATCCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
||
| CDS-3UTR CCA 90 bp | TCTGTGAGATTTGAATGCCTGCCCCCTCAGGGCCTTTCTCCACAGGTAATAGGACTTGGTGAAACTTCCTaGCTCGAAGAAATCGCAGAA | + |
|
Preference number: 4 (lower is better) Translates to: SVRFECLPPQGLSPQVIGLGETS*LEEIAE Trigger: TTCTGCGATTTCTTCGAGCCAGGAAGTTTCACCAAG...TCCTATTACCTGTGGAGAAAGGCCCTGAGGGGGCAGGCATTCAAATCTCACAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
||
| CDS-3UTR TCA 90 bp | TGGGATCCATTTCTAAGGAGAATGGATAAGGAAGTAGGCTGGTCTTTGGCATTTTTCAGCTGGCGGTACTaGAAGTACTGGGCCAGGAGT | + |
|
Preference number: 4 (lower is better) Translates to: WDPFLRRMDKEVGWSLAFFSWRY*KYWARS Trigger: ACTCCTGGCCCAGTACTTTCAGTACCGCCAGCTGAA...AAATGCCAAAGACCAGCCTACTTCCTTATCCATTCTCCTTAGAAATGGATCCCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
||
| CDS-3UTR GCA 90 bp | GGAGCTACTGCTGCTGGGGTTCAGCACTACATTAAACTTGCTGATGTGTCTGCAGCAAGAGAATCTTCCTaGCATAGTGGTCACGATTTT | + |
|
Preference number: 4 (lower is better) Translates to: GATAAGVQHYIKLADVSAARESS*HSGHDF Trigger: AAAATCGTGACCACTATGGCAGGAAGATTCTCTTGC...TGCAGACACATCAGCAAGTTTAATGTAGTGCTGAACCCCAGCAGCAGTAGCTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
||
| CDS-3UTR CCA 90 bp | GGAGCTACTGCTGCTGGGGTTCAGCACTACATTAAACTTGCTGATGTGTCTGCACTTGTCCTTAAGGAATaGCTTGATGAGTGTGTACAG | + |
|
Preference number: 4 (lower is better) Translates to: GATAAGVQHYIKLADVSALVLKE*LDECVQ Trigger: CTGTACACACTCATCAAGCCATTCCTTAAGGACAAG...TGCAGACACATCAGCAAGTTTAATGTAGTGCTGAACCCCAGCAGCAGTAGCTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
||
| CDS-3UTR TCA 90 bp | AGTAACCCTCGGTTACCTGCTGGGTTTAGTTCTCCTCTATACTACATATACATATGTACCAGGGCTGGTTaGCAAAATGGACGCCTCCAA | + |
|
Preference number: 4 (lower is better) Translates to: SNPRLPAGFSSPLYYIYICTRAG*QNGRLQ Trigger: TTGGAGGCGTCCATTTTGTCAACCAGCCCTGGTACA...TATGTATATGTAGTATAGAGGAGAACTAAACCCAGCAGGTAACCGAGGGTTACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
||
| CDS-3UTR CCA 90 bp | AAACAGAGGAACTTACTGACAAAGGCAATACAATCCAGTGTTCATGTAGTAACCAGTGTGTACAGGGCGTaGATGTACCAGGGCTGGTTG | + |
|
Preference number: 4 (lower is better) Translates to: KQRNLLTKAIQSSVHVVTSVYRA*MYQGWL Trigger: CAACCAGCCCTGGTACATCCACGCCCTGTACACACT...GGTTACTACATGAACACTGGATTGTATTGCCTTTGTCAGTAAGTTCCTCTGTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
||
| CDS-3UTR CCA 90 bp | GATTCTAAATCTTGCCTTGTGAAAAGCCAGCAGTACCGTTACTTTTGCAAGTGTGTCCAGAGCCAGCAGTaGCTGGGTGTTCTCATTTTC | + |
|
Preference number: 4 (lower is better) Translates to: DSKSCLVKSQQYRYFCKCVQSQQ*LGVLIF Trigger: GAAAATGAGAACACCCAGCCACTGCTGGCTCTGGAC...ACACTTGCAAAAGTAACGGTACTGCTGGCTTTTCACAAGGCAAGATTTAGAATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
||
| CDS-3UTR CCA 90 bp | GGTCTTTGGCATTTCATCTTGCATTCTTGGTCCTCTTTAGCTTGGTACTTACATGTCCAGAGCCAGCAGTaGCTGGGTGTTCTCATTTTC | + |
|
Preference number: 4 (lower is better) Translates to: GLWHFILHSWSSLAWYLHVQSQQ*LGVLIF Trigger: GAAAATGAGAACACCCAGCCACTGCTGGCTCTGGAC...ATGTAAGTACCAAGCTAAAGAGGACCAAGAATGCAAGATGAAATGCCAAAGACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
||
| CDS-3UTR GCA 90 bp | AGTTCTCCTCTATACTACATATACATAGCGAAATGCAAACCATGTGTTCTCATTGGACTGAGCCCAGCCTaGAAATGCGTCATCTTGGCC | + |
|
Preference number: 4 (lower is better) Translates to: SSPLYYIYIAKCKPCVLIGLSPA*KCVILA Trigger: GGCCAAGATGACGCATTTGCAGGCTGGGCTCAGTCC...AATGAGAACACATGGTTTGCATTTCGCTATGTATATGTAGTATAGAGGAGAACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
||
| CDS-3UTR CCA 90 bp | TGGGATCCATTTCTAAGGAGAATGGATAAGGAAGTAGGCTGGTCTTTGGCATTTGCAAATGCGTCATCTTaGCCAAATCTCCTTCCCAAG | + |
|
Preference number: 4 (lower is better) Translates to: WDPFLRRMDKEVGWSLAFANASS*PNLLPK Trigger: CTTGGGAAGGAGATTTGGCCAAGATGACGCATTTGC...AAATGCCAAAGACCAGCCTACTTCCTTATCCATTCTCCTTAGAAATGGATCCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
||
| CDS-3UTR CCA 90 bp | GATTCTAAATCTTGCCTTGTGAAAAGCCAGCAGTACCGTTACTTTTGCAAGTGTTGGATGTACCAGGGCTaGTTGACAAAATGGACGCCT | + |
|
Preference number: 4 (lower is better) Translates to: DSKSCLVKSQQYRYFCKCWMYQG*LTKWTP Trigger: AGGCGTCCATTTTGTCAACCAGCCCTGGTACATCCA...ACACTTGCAAAAGTAACGGTACTGCTGGCTTTTCACAAGGCAAGATTTAGAATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
||
| CDS-3UTR TCA 90 bp | AGTAACCCTCGGTTACCTGCTGGGTTTAGTTCTCCTCTATACTACATATACATACAAGTGCTTAAGCTCTaGGGTGAGGGAAGAACAGAA | + |
|
Preference number: 4 (lower is better) Translates to: SNPRLPAGFSSPLYYIYIQVLKL*GEGRTE Trigger: TTCTGTTCTTCCCTCACCTCAGAGCTTAAGCACTTG...TATGTATATGTAGTATAGAGGAGAACTAAACCCAGCAGGTAACCGAGGGTTACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
||
| CDS-3UTR TCA 90 bp | GTGTTTATGGCGGGAAGTAAGTTGAATTGGTTTCCTCTTTTCTTTAGGCTGTTCGCTTGGATGCTTGCTTaGAGGAAAAGTTGCTCCAGT | + |
|
Preference number: 4 (lower is better) Translates to: VFMAGSKLNWFPLFFRLFAWMLA*RKSCSS Trigger: ACTGGAGCAACTTTTCCTTCAAGCAAGCATCCAAGC...GAACAGCCTAAAGAAAAGAGGAAACCAATTCAACTTACTTCCCGCCATAAACAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
||
| CDS-3UTR CCA 90 bp | AAACAGAGGAACTTACTGACAAAGGCAATACAATCCAGTGTTCATGTAGTAACCAGAGCCAGCAGTGGCTaGGTGTTCTCATTTTCTCCT | + |
|
Preference number: 4 (lower is better) Translates to: KQRNLLTKAIQSSVHVVTRASSG*VFSFSP Trigger: AGGAGAAAATGAGAACACCCAGCCACTGCTGGCTCT...GGTTACTACATGAACACTGGATTGTATTGCCTTTGTCAGTAAGTTCCTCTGTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
||
| CDS-3UTR GCA 90 bp | AAACAGAGGAACTTACTGACAAAGGCAATACAATCCAGTGTTCATGTAGTAACCAATCTCCTTCCCAAGTaGTTAAGCTCTGAGGTGAGG | + |
|
Preference number: 4 (lower is better) Translates to: KQRNLLTKAIQSSVHVVTNLLPK*LSSEVR Trigger: CCTCACCTCAGAGCTTAAGCACTTGGGAAGGAGATT...GGTTACTACATGAACACTGGATTGTATTGCCTTTGTCAGTAAGTTCCTCTGTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
||
| CDS-3UTR GCA 90 bp | GGTCTTTGGCATTTCATCTTGCATTCTTGGTCCTCTTTAGCTTGGTACTTACATGGGTGTCAGCTTGGATaGTTGCTTGAAGGAAAAGTT | + |
|
Preference number: 4 (lower is better) Translates to: GLWHFILHSWSSLAWYLHGCQLG*LLEGKV Trigger: AACTTTTCCTTCAAGCAAGCATCCAAGCTGACACCC...ATGTAAGTACCAAGCTAAAGAGGACCAAGAATGCAAGATGAAATGCCAAAGACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| CDS-3UTR GCA 90 bp | GTGTTTATGGCGGGAAGTAAGTTGAATTGGTTTCCTCTTTTCTTTAGGCTGTTCGGGTGTCAGCTTGGATaGTTGCTTGAAGGAAAAGTT | + |
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Preference number: 4 (lower is better) Translates to: VFMAGSKLNWFPLFFRLFGCQLG*LLEGKV Trigger: AACTTTTCCTTCAAGCAAGCATCCAAGCTGACACCC...GAACAGCCTAAAGAAAAGAGGAAACCAATTCAACTTACTTCCCGCCATAAACAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| CDS-3UTR CCA 90 bp | AGTAACCCTCGGTTACCTGCTGGGTTTAGTTCTCCTCTATACTACATATACATATTTTTCTATAGTGTCTaGACTGAGCCCAGCCTGCAA | + |
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Preference number: 4 (lower is better) Translates to: SNPRLPAGFSSPLYYIYIFFYSV*TEPSLQ Trigger: TTGCAGGCTGGGCTCAGTCCAGACACTATAGAAAAA...TATGTATATGTAGTATAGAGGAGAACTAAACCCAGCAGGTAACCGAGGGTTACT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| 3UTR CAA 72 bp | TTTCTAAGGAGAATGGATAAGGAAGTAGGCTGGTCTTaGGCATTTCATCTTGCATTCTTGGTCCTCTTTAGC | + |
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Preference number: 4 (lower is better) Translates to: FLRRMDKEVGWS*AFHLAFLVLFS Trigger: GCTAAAGAGGACCAAGAATGCAAGATGAAATGCCAAAGACCAGCCTACTTCCTTATCCATTCTCCTTAGAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| CDS-3UTR TCA 90 bp | GTGTTTATGGCGGGAAGTAAGTTGAATTGGTTTCCTCTTTTCTTTAGGCTGTTCGAAGAAATCGCAGAATaGAGGCATCATCTGTACGTA | + |
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Preference number: 4 (lower is better) Translates to: VFMAGSKLNWFPLFFRLFEEIAE*RHHLYV Trigger: TACGTACAGATGATGCCTTCATTCTGCGATTTCTTC...GAACAGCCTAAAGAAAAGAGGAAACCAATTCAACTTACTTCCCGCCATAAACAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| CDS-3UTR TCA 90 bp | AGTAACCCTCGGTTACCTGCTGGGTTTAGTTCTCCTCTATACTACATATACATAGAAGAAATCGCAGAATaGAGGCATCATCTGTACGTA | + |
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Preference number: 4 (lower is better) Translates to: SNPRLPAGFSSPLYYIYIEEIAE*RHHLYV Trigger: TACGTACAGATGATGCCTTCATTCTGCGATTTCTTC...TATGTATATGTAGTATAGAGGAGAACTAAACCCAGCAGGTAACCGAGGGTTACT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| CDS-3UTR CCA 90 bp | GATTCTAAATCTTGCCTTGTGAAAAGCCAGCAGTACCGTTACTTTTGCAAGTGTCTTGTCCTTAAGGAATaGCTTGATGAGTGTGTACAG | + |
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Preference number: 4 (lower is better) Translates to: DSKSCLVKSQQYRYFCKCLVLKE*LDECVQ Trigger: CTGTACACACTCATCAAGCCATTCCTTAAGGACAAG...ACACTTGCAAAAGTAACGGTACTGCTGGCTTTTCACAAGGCAAGATTTAGAATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| CDS-3UTR CCA 90 bp | GATTCTAAATCTTGCCTTGTGAAAAGCCAGCAGTACCGTTACTTTTGCAAGTGTTGTGTTTCACATGCATaGCATTGTAGGAAGTATGGG | + |
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Preference number: 4 (lower is better) Translates to: DSKSCLVKSQQYRYFCKCCVSHA*HCRKYG Trigger: CCCATACTTCCTACAATGCCATGCATGTGAAACACA...ACACTTGCAAAAGTAACGGTACTGCTGGCTTTTCACAAGGCAAGATTTAGAATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| CDS-3UTR GCA 90 bp | TGGGATCCATTTCTAAGGAGAATGGATAAGGAAGTAGGCTGGTCTTTGGCATTTAATCCCGGGATCATCTaGCTTAAAGTTTTTGAACAT | + |
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Preference number: 4 (lower is better) Translates to: WDPFLRRMDKEVGWSLAFNPGII*LKVFEH Trigger: ATGTTCAAAAACTTTAAGGCAGATGATCCCGGGATT...AAATGCCAAAGACCAGCCTACTTCCTTATCCATTCTCCTTAGAAATGGATCCCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| CDS-3UTR CCA 90 bp | AGTTCTCCTCTATACTACATATACATAGCGAAATGCAAACCATGTGTTCTCATTTTTTTCTATAGTGTCTaGACTGAGCCCAGCCTGCAA | + |
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Preference number: 4 (lower is better) Translates to: SSPLYYIYIAKCKPCVLIFFYSV*TEPSLQ Trigger: TTGCAGGCTGGGCTCAGTCCAGACACTATAGAAAAA...AATGAGAACACATGGTTTGCATTTCGCTATGTATATGTAGTATAGAGGAGAACT 39% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| CDS-3UTR CAA 90 bp | CTCCCCTTTGCTGTTCTCTGTCTGACTTCCTATGCATGGGGGCTGGGATCCATTTGTCAGCTTGGATGCTaGCTTGAAGGAAAAGTTGCT | + |
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Preference number: 5 (lower is better) Translates to: LPFAVLCLTSYAWGLGSICQLGC*LEGKVA Trigger: AGCAACTTTTCCTTCAAGCAAGCATCCAAGCTGACA...AATGGATCCCAGCCCCCATGCATAGGAAGTCAGACAGAGAACAGCAAAGGGGAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| CDS GCA 90 bp | AGTTCCAGACGAGCTTTTTCTATAGTGTCTGGACTGAGCCCAGCCTaGAAATGCGTCATCTTGGCCAAATCTCCTTCCCAAGTGCTTAAG | + |
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Preference number: 5 (lower is better) Translates to: SSRRAFSIVSGLSPA*KCVILAKSPSQVLK Trigger: CTTAAGCACTTGGGAAGGAGATTTGGCCAAGATGACGCATTTGCAGGCTGGGCTCAGTCCAGACACTATAGAAAAAGCTCGTCTGGAACT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| CDS CCA 90 bp | ACTGAGATCTTTTCATGGGCTTGGGTGAGCACTCTCTCTCCAGGTTaGAACAGGTGTGTTTCACATGCATGGCATTGTAGGAAGTATGGG | + |
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Preference number: 5 (lower is better) Translates to: TEIFSWAWVSTLSPG*NRCVSHAWHCRKYG Trigger: CCCATACTTCCTACAATGCCATGCATGTGAAACACACCTGTTCCAACCTGGAGAGAGAGTGCTCACCCAAGCCCATGAAAAGATCTCAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| CDS-3UTR CAA 90 bp | TGGGATCCATTTCTAAGGAGAATGGATAAGGAAGTAGGCTGGTCTTTGGCATTTGATCTTTTCATGGGCTaGGGTGAGCACTCTCTCTCC | + |
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Preference number: 5 (lower is better) Translates to: WDPFLRRMDKEVGWSLAFDLFMG*GEHSLS Trigger: GGAGAGAGAGTGCTCACCCAAGCCCATGAAAAGATC...AAATGCCAAAGACCAGCCTACTTCCTTATCCATTCTCCTTAGAAATGGATCCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| CDS-3UTR CAA 90 bp | GGTCTTTGGCATTTCATCTTGCATTCTTGGTCCTCTTTAGCTTGGTACTTACATTCCTTAAGGAATGGCTaGATGAGTGTGTACAGGGCG | + |
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Preference number: 5 (lower is better) Translates to: GLWHFILHSWSSLAWYLHSLRNG*MSVYRA Trigger: CGCCCTGTACACACTCATCAAGCCATTCCTTAAGGA...ATGTAAGTACCAAGCTAAAGAGGACCAAGAATGCAAGATGAAATGCCAAAGACC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| CDS-3UTR CAA 90 bp | GATTCTAAATCTTGCCTTGTGAAAAGCCAGCAGTACCGTTACTTTTGCAAGTGTTCCTTAAGGAATGGCTaGATGAGTGTGTACAGGGCG | + |
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Preference number: 5 (lower is better) Translates to: DSKSCLVKSQQYRYFCKCSLRNG*MSVYRA Trigger: CGCCCTGTACACACTCATCAAGCCATTCCTTAAGGA...ACACTTGCAAAAGTAACGGTACTGCTGGCTTTTCACAAGGCAAGATTTAGAATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| CDS-3UTR CAA 90 bp | GATTCTAAATCTTGCCTTGTGAAAAGCCAGCAGTACCGTTACTTTTGCAAGTGTTGCAAATGCGTCATCTaGGCCAAATCTCCTTCCCAA | + |
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Preference number: 5 (lower is better) Translates to: DSKSCLVKSQQYRYFCKCCKCVI*AKSPSQ Trigger: TTGGGAAGGAGATTTGGCCAAGATGACGCATTTGCA...ACACTTGCAAAAGTAACGGTACTGCTGGCTTTTCACAAGGCAAGATTTAGAATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| CDS-3UTR CAA 90 bp | GTGTTTATGGCGGGAAGTAAGTTGAATTGGTTTCCTCTTTTCTTTAGGCTGTTCTGTCAGCTTGGATGCTaGCTTGAAGGAAAAGTTGCT | + |
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Preference number: 5 (lower is better) Translates to: VFMAGSKLNWFPLFFRLFCQLGC*LEGKVA Trigger: AGCAACTTTTCCTTCAAGCAAGCATCCAAGCTGACA...GAACAGCCTAAAGAAAAGAGGAAACCAATTCAACTTACTTCCCGCCATAAACAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| CDS-3UTR CAA 90 bp | AGTTCTCCTCTATACTACATATACATAGCGAAATGCAAACCATGTGTTCTCATTGATCTTTTCATGGGCTaGGGTGAGCACTCTCTCTCC | + |
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Preference number: 5 (lower is better) Translates to: SSPLYYIYIAKCKPCVLIDLFMG*GEHSLS Trigger: GGAGAGAGAGTGCTCACCCAAGCCCATGAAAAGATC...AATGAGAACACATGGTTTGCATTTCGCTATGTATATGTAGTATAGAGGAGAACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| CDS CCA 72 bp | TACAGGGCGTGGATGTACCAGGGCTGGTTGACAAAATaGACGCCTCCAAAGCGAGCAGGAAAGCTGTCCTGC | + |
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Preference number: 6 (lower is better) Translates to: YRAWMYQGWLTK*TPPKRAGKLSC Trigger: GCAGGACAGCTTTCCTGCTCGCTTTGGAGGCGTCCATTTTGTCAACCAGCCCTGGTACATCCACGCCCTGTA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| CDS CCA 72 bp | TTTTCATGGGCTTGGGTGAGCACTCTCTCTCCAGGTTaGAACAGGTGTGTTTCACATGCATGGCATTGTAGG | + |
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Preference number: 6 (lower is better) Translates to: FSWAWVSTLSPG*NRCVSHAWHCR Trigger: CCTACAATGCCATGCATGTGAAACACACCTGTTCCAACCTGGAGAGAGAGTGCTCACCCAAGCCCATGAAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| CDS GCA 72 bp | GCAAATGCGTCATCTTGGCCAAATCTCCTTCCCAAGTaGTTAAGCTCTGAGGTGAGGGAAGAACAGAAACTG | + |
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Preference number: 6 (lower is better) Translates to: ANASSWPNLLPK*LSSEVREEQKL Trigger: CAGTTTCTGTTCTTCCCTCACCTCAGAGCTTAAGCACTTGGGAAGGAGATTTGGCCAAGATGACGCATTTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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| CDS CCA 72 bp | TTCATTCAGTTCCAGACGAGCTTTTTCTATAGTGTCTaGACTGAGCCCAGCCTGCAAATGCGTCATCTTGGC | + |
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Preference number: 6 (lower is better) Translates to: FIQFQTSFFYSV*TEPSLQMRHLG Trigger: GCCAAGATGACGCATTTGCAGGCTGGGCTCAGTCCAGACACTATAGAAAAAGCTCGTCTGGAACTGAATGAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038841.14 ENSMUST00000108348.2 |
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