RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CLUH (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020741

Ensembl transcript IDs: ENSMUST00000092915.12, ENSMUST00000117818.2

Found 277 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AAGACCAAGGAGGAGCCAGGCTCCAGAGGTGACAAATCACTCCTGTaGATAGCACTTTCCCTGGGATCCACAATTCAGCCCTGGGTCCCC +
Preference number: 1 (lower is better)
Translates to: KTKEEPGSRGDKSLL*IALSLGSTIQPWVP
Trigger: GGGGACCCAGGGCTGAATTGTGGATCCCAGGGAAAGTGCTATGCACAGGAGTGATTTGTCACCTCTGGAGCCTGGCTCCTCCTTGGTCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
3UTR-3UTR TCA 90 bp GCACCCTACCAGAAGACATCTGGCTCCCCCTCCCAGGACACACGAAAGCCCCCAACACACACATCTGCTTaGTGCTGGGGAGGCACTTGC +
Preference number: 2 (lower is better)
Translates to: APYQKTSGSPSQDTRKPPTHTSA*CWGGTC
Trigger: GCAAGTGCCTCCCCAGCATCAAGCAGATGTGTGTGT...TGGGGGCTTTCGTGTGTCCTGGGAGGGGGAGCCAGATGTCTTCTGGTAGGGTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
3UTR-3UTR CCA 90 bp GCACCCTACCAGAAGACATCTGGCTCCCCCTCCCAGGACACACGAAAGCCCCCACCCCCAGAATTCTCCTaGAATCTGTCTGCATCGCCG +
Preference number: 2 (lower is better)
Translates to: APYQKTSGSPSQDTRKPPPPEFS*NLSASP
Trigger: CGGCGATGCAGACAGATTCCAGGAGAATTCTGGGGG...TGGGGGCTTTCGTGTGTCCTGGGAGGGGGAGCCAGATGTCTTCTGGTAGGGTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
3UTR-3UTR TCA 90 bp CTGCAGGTCTCACCTTGCACCCTACCAGAAGACATCTGGCTCCCCCTCCCAGGAAGGCAGATGGTGGGGTaGGGTGGGGGTATAAAGTTG +
Preference number: 2 (lower is better)
Translates to: LQVSPCTLPEDIWLPLPGRQMVG*GGGIKL
Trigger: CAACTTTATACCCCCACCTCACCCCACCATCTGCCT...TCCTGGGAGGGGGAGCCAGATGTCTTCTGGTAGGGTGCAAGGTGAGACCTGCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
3UTR-3UTR CCA 90 bp GCACCCTACCAGAAGACATCTGGCTCCCCCTCCCAGGACACACGAAAGCCCCCAGATGGTGGGGTGAGGTaGGGGTATAAAGTTGAGGAC +
Preference number: 2 (lower is better)
Translates to: APYQKTSGSPSQDTRKPPDGGVR*GYKVED
Trigger: GTCCTCAACTTTATACCCCCACCTCACCCCACCATC...TGGGGGCTTTCGTGTGTCCTGGGAGGGGGAGCCAGATGTCTTCTGGTAGGGTGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
3UTR-3UTR TCA 90 bp ATGCTGGGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTAGGCAGATGGTGGGGTaGGGTGGGGGTATAAAGTTG +
Preference number: 2 (lower is better)
Translates to: MLGRHLPPQLELMPTHFTRQMVG*GGGIKL
Trigger: CAACTTTATACCCCCACCTCACCCCACCATCTGCCT...AGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCCCAGCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
3UTR-3UTR CCA 90 bp GGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGCCCCCAGAATTCTCCTaGAATCTGTCTGCATCGCCG +
Preference number: 2 (lower is better)
Translates to: GRHLPPQLELMPTHFTFVPPEFS*NLSASP
Trigger: CGGCGATGCAGACAGATTCCAGGAGAATTCTGGGGG...CACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
3UTR CAA 90 bp CAGGCATGGACACACACACACATCTGCTTGATGCTGGGGAGGCACTaGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTG +
Preference number: 2 (lower is better)
Translates to: QAWTHTHICLMLGRH*PPQLELMPTHFTFV
Trigger: CACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCCCAGCATCAAGCAGATGTGTGTGTGTGTCCATGCCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
3UTR-3UTR TCA 90 bp CACTGCAGGTCTCACCTTGCACCCTACCAGAAGACATCTGGCTCCCCCTCCCAGTCATCCACTCAGAACTaGCTGGGCTATGTACATCAG +
Preference number: 2 (lower is better)
Translates to: HCRSHLAPYQKTSGSPSQSSTQN*LGYVHQ
Trigger: CTGATGTACATAGCCCAGTCAGTTCTGAGTGGATGA...CTGGGAGGGGGAGCCAGATGTCTTCTGGTAGGGTGCAAGGTGAGACCTGCAGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
3UTR-3UTR CCA 90 bp ATGCTGGGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTGATGGTGGGGTGAGGTaGGGGTATAAAGTTGAGGAC +
Preference number: 2 (lower is better)
Translates to: MLGRHLPPQLELMPTHFTDGGVR*GYKVED
Trigger: GTCCTCAACTTTATACCCCCACCTCACCCCACCATC...AGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCCCAGCAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
3UTR-3UTR GCA 90 bp CACTGCAGGTCTCACCTTGCACCCTACCAGAAGACATCTGGCTCCCCCTCCCAGCTGAGAAATTGCATCTaGACGTCATCCACTCAGAAC +
Preference number: 2 (lower is better)
Translates to: HCRSHLAPYQKTSGSPSQLRNCI*TSSTQN
Trigger: GTTCTGAGTGGATGACGTGCAGATGCAATTTCTCAG...CTGGGAGGGGGAGCCAGATGTCTTCTGGTAGGGTGCAAGGTGAGACCTGCAGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
3UTR-3UTR CCA 90 bp ACAGTAAAGCCACTGCAGGTCTCACCTTGCACCCTACCAGAAGACATCTGGCTCCCACTCAGAACTGACTaGGCTATGTACATCAGGAAG +
Preference number: 2 (lower is better)
Translates to: TVKPLQVSPCTLPEDIWLPLRTD*AMYIRK
Trigger: CTTCCTGATGTACATAGCCCAGTCAGTTCTGAGTGG...GAGCCAGATGTCTTCTGGTAGGGTGCAAGGTGAGACCTGCAGTGGCTTTACTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
3UTR-3UTR TCA 90 bp ATGCTGGGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTGCATTGAATATTCATTaGACCAGTGCAAAACCATCT +
Preference number: 2 (lower is better)
Translates to: MLGRHLPPQLELMPTHFTALNIH*TSAKPS
Trigger: AGATGGTTTTGCACTGGTTCAATGAATATTCAATGC...AGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCCCAGCAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
3UTR-3UTR CCA 90 bp ACAGATACTATCCATCAGCAGCTCCAGAAAAGCCCCAAGCAGAGGCTCTGCCTAATACATTCAGACTGTTaGCCCCCAAGGTTATGCTCA +
Preference number: 2 (lower is better)
Translates to: TDTIHQQLQKSPKQRLCLIHSDC*PPRLCS
Trigger: TGAGCATAACCTTGGGGGCCAACAGTCTGAATGTAT...TAGGCAGAGCCTCTGCTTGGGGCTTTTCTGGAGCTGCTGATGGATAGTATCTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
3UTR-3UTR TCA 90 bp CCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTCTTCAATTAGGCCTGCATTGAATATTCATTaGACCAGTGCAAAACCATCT +
Preference number: 2 (lower is better)
Translates to: PQLELMPTHFTFVSSIRPALNIH*TSAKPS
Trigger: AGATGGTTTTGCACTGGTTCAATGAATATTCAATGC...AGGCCTAATTGAAGACACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
3UTR-3UTR CAA 90 bp ATGGATGTGTGGGGTCTACCACTGCTGGCCCCTTCCCTTCACCCTGAGGCTACAATGCTGGGGAGGCACTaGCCCCCTCAGCTGGAGCTG +
Preference number: 3 (lower is better)
Translates to: MDVWGLPLLAPSLHPEATMLGRH*PPQLEL
Trigger: CAGCTCCAGCTGAGGGGGCAAGTGCCTCCCCAGCAT...TGTAGCCTCAGGGTGAAGGGAAGGGGCCAGCAGTGGTAGACCCCACACATCCAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
3UTR GCA 72 bp GGCCCAATCACAGTAAAGCCACTGCAGGTCTCACCTTaGACCCTACCAGAAGACATCTGGCTCCCCCTCCCA +
Preference number: 3 (lower is better)
Translates to: GPITVKPLQVSP*TLPEDIWLPLP
Trigger: TGGGAGGGGGAGCCAGATGTCTTCTGGTAGGGTGCAAGGTGAGACCTGCAGTGGCTTTACTGTGATTGGGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
3UTR-3UTR CAA 90 bp GCACCCTACCAGAAGACATCTGGCTCCCCCTCCCAGGACACACGAAAGCCCCCATGCATTGAATATTCATaGAACCAGTGCAAAACCATC +
Preference number: 3 (lower is better)
Translates to: APYQKTSGSPSQDTRKPPCIEYS*NQCKTI
Trigger: GATGGTTTTGCACTGGTTCAATGAATATTCAATGCA...TGGGGGCTTTCGTGTGTCCTGGGAGGGGGAGCCAGATGTCTTCTGGTAGGGTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
3UTR-3UTR CAA 90 bp CCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTCTTCAATTAGGCCTTGCATTGAATATTCATaGAACCAGTGCAAAACCATC +
Preference number: 3 (lower is better)
Translates to: PQLELMPTHFTFVSSIRPCIEYS*NQCKTI
Trigger: GATGGTTTTGCACTGGTTCAATGAATATTCAATGCA...AGGCCTAATTGAAGACACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR GCA 90 bp GCACCCTACCAGAAGACATCTGGCTCCCCCTCCCAGGACACACGAAAGCCCCCAAGCACCGAGCCCTCCTaGAGCCCCTCCACACTGCGT +
Preference number: 4 (lower is better)
Translates to: APYQKTSGSPSQDTRKPPSTEPS*SPSTLR
Trigger: ACGCAGTGTGGAGGGGCTGCAGGAGGGCTCGGTGCT...TGGGGGCTTTCGTGTGTCCTGGGAGGGGGAGCCAGATGTCTTCTGGTAGGGTGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR TCA 90 bp GCACCCTACCAGAAGACATCTGGCTCCCCCTCCCAGGACACACGAAAGCCCCCACAAAGGCCGTGCTGCTaGTGGAGCCAACAGCCTTGC +
Preference number: 4 (lower is better)
Translates to: APYQKTSGSPSQDTRKPPQRPCC*WSQQPC
Trigger: GCAAGGCTGTTGGCTCCATCAGCAGCACGGCCTTTG...TGGGGGCTTTCGTGTGTCCTGGGAGGGGGAGCCAGATGTCTTCTGGTAGGGTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR GCA 90 bp CCACAGGCATGGACACACACACACATCTGCTTGATGCTGGGGAGGCACTTGCCCTCACGGTTCTGGGGCTaGAGGGGACAGAGAGGCCGC +
Preference number: 4 (lower is better)
Translates to: PQAWTHTHICLMLGRHLPSRFWG*RGQRGR
Trigger: GCGGCCTCTCTGTCCCCTGCAGCCCCAGAACCGTGA...GGGCAAGTGCCTCCCCAGCATCAAGCAGATGTGTGTGTGTGTCCATGCCTGTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR TCA 90 bp GCCCCTTCCCTTCACCCTGAGGCTACAGGTAGGCCAGGCCCAATCACAGTAAAGCTACTAGGGAATGGCTaGGGAAGCGGGGGCTGGCAG +
Preference number: 4 (lower is better)
Translates to: APSLHPEATGRPGPITVKLLGNG*GSGGWQ
Trigger: CTGCCAGCCCCCGCTTCCTCAGCCATTCCCTAGTAG...CTTTACTGTGATTGGGCCTGGCCTACCTGTAGCCTCAGGGTGAAGGGAAGGGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR TCA 90 bp GCACCCTACCAGAAGACATCTGGCTCCCCCTCCCAGGACACACGAAAGCCCCCAGCACAGGAAGGAAGTTaGGGTCTGGTGGGAAGGTGC +
Preference number: 4 (lower is better)
Translates to: APYQKTSGSPSQDTRKPPAQEGS*GLVGRC
Trigger: GCACCTTCCCACCAGACCTCAACTTCCTTCCTGTGC...TGGGGGCTTTCGTGTGTCCTGGGAGGGGGAGCCAGATGTCTTCTGGTAGGGTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR GCA 90 bp GGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTCACGGTTCTGGGGCTaGAGGGGACAGAGAGGCCGC +
Preference number: 4 (lower is better)
Translates to: GRHLPPQLELMPTHFTFVSRFWG*RGQRGR
Trigger: GCGGCCTCTCTGTCCCCTGCAGCCCCAGAACCGTGA...CACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR GCA 90 bp CTGCAGGTCTCACCTTGCACCCTACCAGAAGACATCTGGCTCCCCCTCCCAGGACGAGGCCACTCACACTaGTGCCCTCCTCCTCACATC +
Preference number: 4 (lower is better)
Translates to: LQVSPCTLPEDIWLPLPGRGHSH*CPPPHI
Trigger: GATGTGAGGAGGAGGGCAGCAGTGTGAGTGGCCTCG...TCCTGGGAGGGGGAGCCAGATGTCTTCTGGTAGGGTGCAAGGTGAGACCTGCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CCA 90 bp GCACCCTACCAGAAGACATCTGGCTCCCCCTCCCAGGACACACGAAAGCCCCCAGTGTGGCCCCATCCATaGGCAGCACAGCATACTCTG +
Preference number: 4 (lower is better)
Translates to: APYQKTSGSPSQDTRKPPVWPHP*AAQHTL
Trigger: CAGAGTATGCTGTGCTGCCCATGGATGGGGCCACAC...TGGGGGCTTTCGTGTGTCCTGGGAGGGGGAGCCAGATGTCTTCTGGTAGGGTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CCA 90 bp GCACCCTACCAGAAGACATCTGGCTCCCCCTCCCAGGACACACGAAAGCCCCCATTTCTGTTGGCCTCTTaGAGCTGGTGTCGCCGTGCC +
Preference number: 4 (lower is better)
Translates to: APYQKTSGSPSQDTRKPPFLLAS*SWCRRA
Trigger: GGCACGGCGACACCAGCTCCAAGAGGCCAACAGAAA...TGGGGGCTTTCGTGTGTCCTGGGAGGGGGAGCCAGATGTCTTCTGGTAGGGTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CCA 90 bp ATGCTGGGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTCTCCACGGCTCTCTCTaGCTCAGGCTCAGGCTCGGG +
Preference number: 4 (lower is better)
Translates to: MLGRHLPPQLELMPTHFTLHGSL*LRLRLG
Trigger: CCCGAGCCTGAGCCTGAGCCAGAGAGAGCCGTGGAG...AGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCCCAGCAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR TCA 90 bp GGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGCTACTAGGGAATGGCTaGGGAAGCGGGGGCTGGCAG +
Preference number: 4 (lower is better)
Translates to: GRHLPPQLELMPTHFTFVLLGNG*GSGGWQ
Trigger: CTGCCAGCCCCCGCTTCCTCAGCCATTCCCTAGTAG...CACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR GCA 90 bp CACACACATCTGCTTGATGCTGGGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGGTCCCCATGCATCTTaGGGTTCCCAGGAGGTGGGT +
Preference number: 4 (lower is better)
Translates to: HTHLLDAGEALAPSAGADGPHAS*GSQEVG
Trigger: ACCCACCTCCTGGGAACCGCAAGATGCATGGGGACC...ATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCCCAGCATCAAGCAGATGTGTGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CCA 90 bp GCACCCTACCAGAAGACATCTGGCTCCCCCTCCCAGGACACACGAAAGCCCCCAACCAAACCGGGGATCTaGCAGGAGAGCAGGAAAGCA +
Preference number: 4 (lower is better)
Translates to: APYQKTSGSPSQDTRKPPTKPGI*QESRKA
Trigger: TGCTTTCCTGCTCTCCTGCCAGATCCCCGGTTTGGT...TGGGGGCTTTCGTGTGTCCTGGGAGGGGGAGCCAGATGTCTTCTGGTAGGGTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CCA 90 bp ATGCTGGGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTCACCTCGGCCAGTGTaGCCCCATCCATGGGCAGCA +
Preference number: 4 (lower is better)
Translates to: MLGRHLPPQLELMPTHFTSPRPV*PHPWAA
Trigger: TGCTGCCCATGGATGGGGCCACACTGGCCGAGGTGA...AGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCCCAGCAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR TCA 90 bp ATGCTGGGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTGGCAGGCTTGGGGTTaGAGTGGTAGGCCGTGGACT +
Preference number: 4 (lower is better)
Translates to: MLGRHLPPQLELMPTHFTWQAWG*SGRPWT
Trigger: AGTCCACGGCCTACCACTTCAACCCCAAGCCTGCCA...AGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCCCAGCAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR TCA 90 bp ATGCTGGGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTCAAAGGCCGTGCTGCTaGTGGAGCCAACAGCCTTGC +
Preference number: 4 (lower is better)
Translates to: MLGRHLPPQLELMPTHFTQRPCC*WSQQPC
Trigger: GCAAGGCTGTTGGCTCCATCAGCAGCACGGCCTTTG...AGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCCCAGCAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR TCA 90 bp GGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGGCACATCTTCCTCAGTaGAGGCAGGCTTGTGGCGGC +
Preference number: 4 (lower is better)
Translates to: GRHLPPQLELMPTHFTFVAHLPQ*RQACGG
Trigger: GCCGCCACAAGCCTGCCTTCACTGAGGAAGATGTGC...CACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR TCA 90 bp ATGGATGTGTGGGGTCTACCACTGCTGGCCCCTTCCCTTCACCCTGAGGCTACAAGCACGGCCTTCTGTTaGTTGCTGAGGGCCTCAGCA +
Preference number: 4 (lower is better)
Translates to: MDVWGLPLLAPSLHPEATSTAFC*LLRASA
Trigger: TGCTGAGGCCCTCAGCAATCAACAGAAGGCCGTGCT...TGTAGCCTCAGGGTGAAGGGAAGGGGCCAGCAGTGGTAGACCCCACACATCCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR GCA 90 bp CACTGCAGGTCTCACCTTGCACCCTACCAGAAGACATCTGGCTCCCCCTCCCAGGCAGCCCCTCCACACTaGGTAGCTCTGAAAAGTGGT +
Preference number: 4 (lower is better)
Translates to: HCRSHLAPYQKTSGSPSQAAPPH*VALKSG
Trigger: ACCACTTTTCAGAGCTACGCAGTGTGGAGGGGCTGC...CTGGGAGGGGGAGCCAGATGTCTTCTGGTAGGGTGCAAGGTGAGACCTGCAGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR GCA 90 bp ATGCTGGGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTGGTCCCCATGCATCTTaGGGTTCCCAGGAGGTGGGT +
Preference number: 4 (lower is better)
Translates to: MLGRHLPPQLELMPTHFTGPHAS*GSQEVG
Trigger: ACCCACCTCCTGGGAACCGCAAGATGCATGGGGACC...AGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCCCAGCAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR GCA 90 bp CCTTCCCTTCACCCTGAGGCTACAGGTAGGCCAGGCCCAATCACAGTAAAGCCACCAGGCAGTGTTGTCTaGAGCTCCTGGGGGCCTGTT +
Preference number: 4 (lower is better)
Translates to: PSLHPEATGRPGPITVKPPGSVV*SSWGPV
Trigger: AACAGGCCCCCAGGAGCTGCAGACAACACTGCCTGG...TGGCTTTACTGTGATTGGGCCTGGCCTACCTGTAGCCTCAGGGTGAAGGGAAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR GCA 90 bp GGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGGAGCTGGTGTCGCCGTaGCACCTCTGCCTTCAGGTT +
Preference number: 4 (lower is better)
Translates to: GRHLPPQLELMPTHFTFVELVSP*HLCLQV
Trigger: AACCTGAAGGCAGAGGTGGCACGGCGACACCAGCTC...CACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CCA 90 bp CACTGCAGGTCTCACCTTGCACCCTACCAGAAGACATCTGGCTCCCCCTCCCAGCAGGATATACTCAGGTaGGGTGCAGTCGATGGGGTC +
Preference number: 4 (lower is better)
Translates to: HCRSHLAPYQKTSGSPSQQDILR*GAVDGV
Trigger: GACCCCATCGACTGCACCCCACCTGAGTATATCCTG...CTGGGAGGGGGAGCCAGATGTCTTCTGGTAGGGTGCAAGGTGAGACCTGCAGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CCA 90 bp GCACCCTACCAGAAGACATCTGGCTCCCCCTCCCAGGACACACGAAAGCCCCCAATCCTCTCGAATGGGTaGCGCTGGACCCTTTTCTTC +
Preference number: 4 (lower is better)
Translates to: APYQKTSGSPSQDTRKPPILSNG*RWTLFF
Trigger: GAAGAAAAGGGTCCAGCGCCACCCATTCGAGAGGAT...TGGGGGCTTTCGTGTGTCCTGGGAGGGGGAGCCAGATGTCTTCTGGTAGGGTGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CCA 90 bp GCCCCTTCCCTTCACCCTGAGGCTACAGGTAGGCCAGGCCCAATCACAGTAAAGGGCGATCCTCTCGAATaGGTGGCGCTGGACCCTTTT +
Preference number: 4 (lower is better)
Translates to: APSLHPEATGRPGPITVKGDPLE*VALDPF
Trigger: AAAAGGGTCCAGCGCCACCCATTCGAGAGGATCGCC...CTTTACTGTGATTGGGCCTGGCCTACCTGTAGCCTCAGGGTGAAGGGAAGGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR TCA 90 bp CACACACATCTGCTTGATGCTGGGGAGGCACTTGCCCCCTCAGCTGGAGCTGATTATCCTCACGGTCCATaGGCACCTGGTGGATCTCCT +
Preference number: 4 (lower is better)
Translates to: HTHLLDAGEALAPSAGADYPHGP*APGGSP
Trigger: AGGAGATCCACCAGGTGCTCATGGACCGTGAGGATA...ATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCCCAGCATCAAGCAGATGTGTGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR TCA 90 bp CCTTCCCTTCACCCTGAGGCTACAGGTAGGCCAGGCCCAATCACAGTAAAGCCACCAGGTATCGCATGTTaGTGCCACGCTGGCGCATCA +
Preference number: 4 (lower is better)
Translates to: PSLHPEATGRPGPITVKPPGIAC*CHAGAS
Trigger: TGATGCGCCAGCGTGGCATCAACATGCGATACCTGG...TGGCTTTACTGTGATTGGGCCTGGCCTACCTGTAGCCTCAGGGTGAAGGGAAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR TCA 90 bp ATGCTGGGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTAGTTCAGGAAGTGGCTaGTGGCAGCTGAGAGGCCTG +
Preference number: 4 (lower is better)
Translates to: MLGRHLPPQLELMPTHFTSSGSG*WQLRGL
Trigger: CAGGCCTCTCAGCTGCCATCAGCCACTTCCTGAACT...AGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCCCAGCAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR TCA 90 bp GGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGAGTTCAGGAAGTGGCTaGTGGCAGCTGAGAGGCCTG +
Preference number: 4 (lower is better)
Translates to: GRHLPPQLELMPTHFTFVSSGSG*WQLRGL
Trigger: CAGGCCTCTCAGCTGCCATCAGCCACTTCCTGAACT...CACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR TCA 90 bp GCCCCTTCCCTTCACCCTGAGGCTACAGGTAGGCCAGGCCCAATCACAGTAAAGCAGCATAATCACCCATaGTGTAGTGGAGGCGGGCCA +
Preference number: 4 (lower is better)
Translates to: APSLHPEATGRPGPITVKQHNHP*CSGGGP
Trigger: TGGCCCGCCTCCACTACATCATGGGTGATTATGCTG...CTTTACTGTGATTGGGCCTGGCCTACCTGTAGCCTCAGGGTGAAGGGAAGGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR TCA 90 bp GGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGAGCACGGCCTTCTGTTaGTTGCTGAGGGCCTCAGCA +
Preference number: 4 (lower is better)
Translates to: GRHLPPQLELMPTHFTFVSTAFC*LLRASA
Trigger: TGCTGAGGCCCTCAGCAATCAACAGAAGGCCGTGCT...CACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR GCA 90 bp CCTGTGCATAGCACTTTCCCTGGGATCCACAATTCAGCCCTGGGTCCCCACCCCACCGGAACTCAGCTTTaGTCTCATAAACCCGCGCGA +
Preference number: 4 (lower is better)
Translates to: PVHSTFPGIHNSALGPHPTGTQL*SHKPAR
Trigger: TCGCGCGGGTTTATGAGAGCAAAGCTGAGTTCCGGT...GGGGTGGGGACCCAGGGCTGAATTGTGGATCCCAGGGAAAGTGCTATGCACAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CCA 90 bp CCTTCCCTTCACCCTGAGGCTACAGGTAGGCCAGGCCCAATCACAGTAAAGCCAAGCTCTACTAGGGAATaGCTGAGGAAGCGGGGGCTG +
Preference number: 4 (lower is better)
Translates to: PSLHPEATGRPGPITVKPSSTRE*LRKRGL
Trigger: CAGCCCCCGCTTCCTCAGCCATTCCCTAGTAGAGCT...TGGCTTTACTGTGATTGGGCCTGGCCTACCTGTAGCCTCAGGGTGAAGGGAAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CCA 90 bp ATGCTGGGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTAGCTCTACTAGGGAATaGCTGAGGAAGCGGGGGCTG +
Preference number: 4 (lower is better)
Translates to: MLGRHLPPQLELMPTHFTSSTRE*LRKRGL
Trigger: CAGCCCCCGCTTCCTCAGCCATTCCCTAGTAGAGCT...AGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCCCAGCAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CCA 90 bp CACACACATCTGCTTGATGCTGGGGAGGCACTTGCCCCCTCAGCTGGAGCTGATATACCTGGAACGGGGTaGCGATCCTCTCGAATGGGT +
Preference number: 4 (lower is better)
Translates to: HTHLLDAGEALAPSAGADIPGTG*RSSRMG
Trigger: ACCCATTCGAGAGGATCGCCACCCCGTTCCAGGTAT...ATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCCCAGCATCAAGCAGATGTGTGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CCA 90 bp GGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGGTCCAGCTGTATACCTaGAACGGGGTGGCGATCCTC +
Preference number: 4 (lower is better)
Translates to: GRHLPPQLELMPTHFTFVVQLYT*NGVAIL
Trigger: GAGGATCGCCACCCCGTTCCAGGTATACAGCTGGAC...CACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CCA 90 bp ATGCTGGGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTATGGCATGCTCTGCCTaGGGGGCTGTCCAGCTGTAT +
Preference number: 4 (lower is better)
Translates to: MLGRHLPPQLELMPTHFTMACSA*GAVQLY
Trigger: ATACAGCTGGACAGCCCCCCAGGCAGAGCATGCCAT...AGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCCCAGCAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CCA 90 bp ATGCTGGGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTCATTCTCCAGGGAGGTaGTGGTCTCCACCTTGCTGG +
Preference number: 4 (lower is better)
Translates to: MLGRHLPPQLELMPTHFTHSPGR*WSPPCW
Trigger: CCAGCAAGGTGGAGACCACCACCTCCCTGGAGAATG...AGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCCCAGCAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CCA 90 bp ACAGATACTATCCATCAGCAGCTCCAGAAAAGCCCCAAGCAGAGGCTCTGCCTACAGCTGGTCTCGGGCTaGGCTCCGCAGCACCAGATC +
Preference number: 4 (lower is better)
Translates to: TDTIHQQLQKSPKQRLCLQLVSG*APQHQI
Trigger: GATCTGGTGCTGCGGAGCCCAGCCCGAGACCAGCTG...TAGGCAGAGCCTCTGCTTGGGGCTTTTCTGGAGCTGCTGATGGATAGTATCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CCA 90 bp CCACAGGCATGGACACACACACACATCTGCTTGATGCTGGGGAGGCACTTGCCCGTTGTCTGCAGCTCCTaGGGGCCTGTTTTTCCTCCT +
Preference number: 4 (lower is better)
Translates to: PQAWTHTHICLMLGRHLPVVCSS*GPVFPP
Trigger: AGGAGGAAAAACAGGCCCCCAGGAGCTGCAGACAAC...GGGCAAGTGCCTCCCCAGCATCAAGCAGATGTGTGTGTGTGTCCATGCCTGTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CCA 90 bp CACACACATCTGCTTGATGCTGGGGAGGCACTTGCCCCCTCAGCTGGAGCTGATTTCTTCCAGAGCTCTTaGGGGGTCATCACAGCCCAG +
Preference number: 4 (lower is better)
Translates to: HTHLLDAGEALAPSAGADFFQSS*GVITAQ
Trigger: CTGGGCTGTGATGACCCCCCAAGAGCTCTGGAAGAA...ATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCCCAGCATCAAGCAGATGTGTGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CCA 90 bp CCACAGGCATGGACACACACACACATCTGCTTGATGCTGGGGAGGCACTTGCCCCCACTCTGGAAGAAGTaGAAGGCATCCGACGCCTTG +
Preference number: 4 (lower is better)
Translates to: PQAWTHTHICLMLGRHLPPLWKK*KASDAL
Trigger: CAAGGCGTCGGATGCCTTCCACTTCTTCCAGAGTGG...GGGCAAGTGCCTCCCCAGCATCAAGCAGATGTGTGTGTGTGTCCATGCCTGTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CCA 90 bp GCCCCTTCCCTTCACCCTGAGGCTACAGGTAGGCCAGGCCCAATCACAGTAAAGAGGGCCTTGGGCCCATaGTACTTTGTAGTGACAGCC +
Preference number: 4 (lower is better)
Translates to: APSLHPEATGRPGPITVKRALGP*YFVVTA
Trigger: GGCTGTCACTACAAAGTACCATGGGCCCAAGGCCCT...CTTTACTGTGATTGGGCCTGGCCTACCTGTAGCCTCAGGGTGAAGGGAAGGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CCA 90 bp CCTGTGCATAGCACTTTCCCTGGGATCCACAATTCAGCCCTGGGTCCCCACCCCTCCTTGGTTTTCTCATaGTCCTCACCGAGCTGCGTC +
Preference number: 4 (lower is better)
Translates to: PVHSTFPGIHNSALGPHPSLVFS*SSPSCV
Trigger: GACGCAGCTCGGTGAGGACCATGAGAAAACCAAGGA...GGGGTGGGGACCCAGGGCTGAATTGTGGATCCCAGGGAAAGTGCTATGCACAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CCA 90 bp CCACAGGCATGGACACACACACACATCTGCTTGATGCTGGGGAGGCACTTGCCCAAGAAGGACCTTCCTTaGCAGTCTGAGGGGAGCCCA +
Preference number: 4 (lower is better)
Translates to: PQAWTHTHICLMLGRHLPKKDLP*QSEGSP
Trigger: TGGGCTCCCCTCAGACTGCCAAGGAAGGTCCTTCTT...GGGCAAGTGCCTCCCCAGCATCAAGCAGATGTGTGTGTGTGTCCATGCCTGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
3UTR CAA 72 bp AGGCCCAATCACAGTAAAGCCACTGCAGGTCTCACCTaGCACCCTACCAGAAGACATCTGGCTCCCCCTCCC +
Preference number: 4 (lower is better)
Translates to: RPNHSKATAGLT*HPTRRHLAPPP
Trigger: GGGAGGGGGAGCCAGATGTCTTCTGGTAGGGTGCAAGGTGAGACCTGCAGTGGCTTTACTGTGATTGGGCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR TCA 90 bp ATGCTGGGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTATCCTCACGGTCCATaGGCACCTGGTGGATCTCCT +
Preference number: 4 (lower is better)
Translates to: MLGRHLPPQLELMPTHFTYPHGP*APGGSP
Trigger: AGGAGATCCACCAGGTGCTCATGGACCGTGAGGATA...AGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCCCAGCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR TCA 90 bp CAAGCAGAGGCTCTGCCTAAAACAGCTCCCTTAAGCTCAAAGGGTGGCCATCTCTGGCAGGCTTGGGGTTaGAGTGGTAGGCCGTGGACT +
Preference number: 4 (lower is better)
Translates to: QAEALPKTAPLSSKGGHLWQAWG*SGRPWT
Trigger: AGTCCACGGCCTACCACTTCAACCCCAAGCCTGCCA...GAGATGGCCACCCTTTGAGCTTAAGGGAGCTGTTTTAGGCAGAGCCTCTGCTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR TCA 90 bp ATGCTGGGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTGCCCATCATTGCCAATaGTGCCCTTACACTCGACCG +
Preference number: 4 (lower is better)
Translates to: MLGRHLPPQLELMPTHFTAHHCQ*CPYTRP
Trigger: CGGTCGAGTGTAAGGGCATCATTGGCAATGATGGGC...AGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCCCAGCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR TCA 90 bp ATGCTGGGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTACTGTGCCATCATCTaGGGCGATGGTCTCTGCCAG +
Preference number: 4 (lower is better)
Translates to: MLGRHLPPQLELMPTHFTYCAII*GDGLCQ
Trigger: CTGGCAGAGACCATCGCCTCAGATGATGGCACAGTA...AGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCCCAGCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR TCA 90 bp GGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGGATCCCGGTTTTCAGTaGGATCTCCCGCAGCAGTGT +
Preference number: 4 (lower is better)
Translates to: GRHLPPQLELMPTHFTFVDPGFQ*DLPQQC
Trigger: ACACTGCTGCGGGAGATCTCACTGAAAACCGGGATC...CACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR TCA 90 bp CAAGCAGAGGCTCTGCCTAAAACAGCTCCCTTAAGCTCAAAGGGTGGCCATCTCGCACATCTTCCTCAGTaGAGGCAGGCTTGTGGCGGC +
Preference number: 4 (lower is better)
Translates to: QAEALPKTAPLSSKGGHLAHLPQ*RQACGG
Trigger: GCCGCCACAAGCCTGCCTTCACTGAGGAAGATGTGC...GAGATGGCCACCCTTTGAGCTTAAGGGAGCTGTTTTAGGCAGAGCCTCTGCTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR TCA 90 bp GGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGCAGCATAATCACCCATaGTGTAGTGGAGGCGGGCCA +
Preference number: 4 (lower is better)
Translates to: GRHLPPQLELMPTHFTFVQHNHP*CSGGGP
Trigger: TGGCCCGCCTCCACTACATCATGGGTGATTATGCTG...CACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR TCA 90 bp CACACACATCTGCTTGATGCTGGGGAGGCACTTGCCCCCTCAGCTGGAGCTGATAATGCCATCTCAGGGTaGTCCTCCCCAAACACAAGC +
Preference number: 4 (lower is better)
Translates to: HTHLLDAGEALAPSAGADNAISG*SSPNTS
Trigger: GCTTGTGTTTGGGGAGGATCACCCTGAGATGGCATT...ATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCCCAGCATCAAGCAGATGTGTGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR GCA 90 bp ATGCTGGGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTGCAGTGATGCTGACTTaGCGGTCCTCAGCAGTGATC +
Preference number: 4 (lower is better)
Translates to: MLGRHLPPQLELMPTHFTAVMLT*RSSAVI
Trigger: GATCACTGCTGAGGACCGGCAAGTCAGCATCACTGC...AGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCCCAGCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR GCA 90 bp CTGCAGGTCTCACCTTGCACCCTACCAGAAGACATCTGGCTCCCCCTCCCAGGATATGTCTTGAAGATGTaGTTGGCGGAGCGGGTGATG +
Preference number: 4 (lower is better)
Translates to: LQVSPCTLPEDIWLPLPGYVLKM*LAERVM
Trigger: CATCACCCGCTCCGCCAAGCACATCTTCAAGACATA...TCCTGGGAGGGGGAGCCAGATGTCTTCTGGTAGGGTGCAAGGTGAGACCTGCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR GCA 90 bp CACTGCAGGTCTCACCTTGCACCCTACCAGAAGACATCTGGCTCCCCCTCCCAGGCCTTGGGGTTGACATaGTTGACCACAGGGAAGATA +
Preference number: 4 (lower is better)
Translates to: HCRSHLAPYQKTSGSPSQALGLT*LTTGKI
Trigger: TATCTTCCCTGTGGTCAAGCATGTCAACCCCAAGGC...CTGGGAGGGGGAGCCAGATGTCTTCTGGTAGGGTGCAAGGTGAGACCTGCAGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR GCA 90 bp CAAGCAGAGGCTCTGCCTAAAACAGCTCCCTTAAGCTCAAAGGGTGGCCATCTCTCATTCATGGTGCGCTaGAGGGCCACAGCCTGCTGG +
Preference number: 4 (lower is better)
Translates to: QAEALPKTAPLSSKGGHLSFMVR*RATACW
Trigger: CCAGCAGGCTGTGGCCCTGCAGCGCACCATGAATGA...GAGATGGCCACCCTTTGAGCTTAAGGGAGCTGTTTTAGGCAGAGCCTCTGCTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR GCA 90 bp GGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGAGATCTCATTCATGGTaGGCTGCAGGGCCACAGCCT +
Preference number: 4 (lower is better)
Translates to: GRHLPPQLELMPTHFTFVRSHSW*AAGPQP
Trigger: AGGCTGTGGCCCTGCAGCGCACCATGAATGAGATCT...CACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CCA 90 bp ATGCTGGGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTCACCATTCAGGTCATTaGTGGGTGCCACGTAGGCTG +
Preference number: 4 (lower is better)
Translates to: MLGRHLPPQLELMPTHFTHHSGH*WVPRRL
Trigger: CAGCCTACGTGGCACCCACCAATGACCTGAATGGTG...AGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCCCAGCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CCA 90 bp CACTGCAGGTCTCACCTTGCACCCTACCAGAAGACATCTGGCTCCCCCTCCCAGAAACAGTTCAGGAAGTaGCTGATGGCAGCTGAGAGG +
Preference number: 4 (lower is better)
Translates to: HCRSHLAPYQKTSGSPSQKQFRK*LMAAER
Trigger: CCTCTCAGCTGCCATCAGCCACTTCCTGAACTGTTT...CTGGGAGGGGGAGCCAGATGTCTTCTGGTAGGGTGCAAGGTGAGACCTGCAGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CCA 90 bp GGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGGTTGTCTGCAGCTCCTaGGGGCCTGTTTTTCCTCCT +
Preference number: 4 (lower is better)
Translates to: GRHLPPQLELMPTHFTFVVVCSS*GPVFPP
Trigger: AGGAGGAAAAACAGGCCCCCAGGAGCTGCAGACAAC...CACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CCA 90 bp GGGTGGCCATCTCCTTCAGGGACAGCAGACAAAGAGAAGCGACACAGGCAGGGAAGCCCTGCTGTACTTTaGCCTGTCCACTCTGGAAGA +
Preference number: 4 (lower is better)
Translates to: GWPSPSGTADKEKRHRQGSPAVL*PVHSGR
Trigger: TCTTCCAGAGTGGACAGGCCAAAGTACAGCAGGGCT...TCCCTGCCTGTGTCGCTTCTCTTTGTCTGCTGTCCCTGAAGGAGATGGCCACCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CCA 90 bp GGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGAGGGCCTTGGGCCCATaGTACTTTGTAGTGACAGCC +
Preference number: 4 (lower is better)
Translates to: GRHLPPQLELMPTHFTFVRALGP*YFVVTA
Trigger: GGCTGTCACTACAAAGTACCATGGGCCCAAGGCCCT...CACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CCA 90 bp ATGCTGGGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTAAGAAGGACCTTCCTTaGCAGTCTGAGGGGAGCCCA +
Preference number: 4 (lower is better)
Translates to: MLGRHLPPQLELMPTHFTKKDLP*QSEGSP
Trigger: TGGGCTCCCCTCAGACTGCCAAGGAAGGTCCTTCTT...AGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCCCAGCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR TCA 90 bp GGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGAGGCAGCCAGCTTCATaGAGAGAAGGTACCTGTGCT +
Preference number: 4 (lower is better)
Translates to: GRHLPPQLELMPTHFTFVRQPAS*REGTCA
Trigger: AGCACAGGTACCTTCTCTTCATGAAGCTGGCTGCCT...CACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR TCA 90 bp GGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGAGATTTGGTCTCTGCTaGGGAGGGAAGGCCACCATT +
Preference number: 4 (lower is better)
Translates to: GRHLPPQLELMPTHFTFVRFGLC*GGKATI
Trigger: AATGGTGGCCTTCCCTCCTCAGCAGAGACCAAATCT...CACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR TCA 90 bp GGGTGGCCATCTCCTTCAGGGACAGCAGACAAAGAGAAGCGACACAGGCAGGGACCTGTAGATATGTCTTaGAGATGTGCTTGGCGGAGC +
Preference number: 4 (lower is better)
Translates to: GWPSPSGTADKEKRHRQGPVDMS*RCAWRS
Trigger: GCTCCGCCAAGCACATCTTCAAGACATATCTACAGG...TCCCTGCCTGTGTCGCTTCTCTTTGTCTGCTGTCCCTGAAGGAGATGGCCACCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR GCA 90 bp CCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTCTTCAATTAGGCCTAGCACCGAGCCCTCCTaGAGCCCCTCCACACTGCGT +
Preference number: 4 (lower is better)
Translates to: PQLELMPTHFTFVSSIRPSTEPS*SPSTLR
Trigger: ACGCAGTGTGGAGGGGCTGCAGGAGGGCTCGGTGCT...AGGCCTAATTGAAGACACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR GCA 90 bp ATGCTGGGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTAGTACTTTCAGACACTaGAGGGGCTTCCAGTCACGG +
Preference number: 4 (lower is better)
Translates to: MLGRHLPPQLELMPTHFTSTFRH*RGFQSR
Trigger: CCGTGACTGGAAGCCCCTGCAGTGTCTGAAAGTACT...AGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCCCAGCAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR GCA 90 bp GCCCCTTCCCTTCACCCTGAGGCTACAGGTAGGCCAGGCCCAATCACAGTAAAGAGCTCCCTTGTTGTCTaGAGCTCTTCATTCCAGTCC +
Preference number: 4 (lower is better)
Translates to: APSLHPEATGRPGPITVKSSLVV*SSSFQS
Trigger: GGACTGGAATGAAGAGCTGCAGACAACAAGGGAGCT...CTTTACTGTGATTGGGCCTGGCCTACCTGTAGCCTCAGGGTGAAGGGAAGGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR GCA 90 bp CCACAGGCATGGACACACACACACATCTGCTTGATGCTGGGGAGGCACTTGCCCTACTCCATTACTCCATaGAGCACCAGCCCGATGTTG +
Preference number: 4 (lower is better)
Translates to: PQAWTHTHICLMLGRHLPYSITP*STSPML
Trigger: CAACATCGGGCTGGTGCTGCATGGAGTAATGGAGTA...GGGCAAGTGCCTCCCCAGCATCAAGCAGATGTGTGTGTGTGTCCATGCCTGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR GCA 90 bp GGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTGTAGTGACAGCCAGTaGGTTCTCCAAGAAGCGCAG +
Preference number: 4 (lower is better)
Translates to: GRHLPPQLELMPTHFTFVCSDSQ*VLQEAQ
Trigger: CTGCGCTTCTTGGAGAACGCACTGGCTGTCACTACA...CACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CCA 90 bp GCCCCTTCCCTTCACCCTGAGGCTACAGGTAGGCCAGGCCCAATCACAGTAAAGCCCATTTTCCCTAGGTaGCTCAGATGTCCCTTCTTC +
Preference number: 4 (lower is better)
Translates to: APSLHPEATGRPGPITVKPIFPR*LRCPFF
Trigger: GAAGAAGGGACATCTGAGCCACCTAGGGAAAATGGG...CTTTACTGTGATTGGGCCTGGCCTACCTGTAGCCTCAGGGTGAAGGGAAGGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CCA 90 bp ACAGATACTATCCATCAGCAGCTCCAGAAAAGCCCCAAGCAGAGGCTCTGCCTATCTCCAGGGAGGTGGTaGTCTCCACCTTGCTGGCCT +
Preference number: 4 (lower is better)
Translates to: TDTIHQQLQKSPKQRLCLSPGRW*SPPCWP
Trigger: AGGCCAGCAAGGTGGAGACCACCACCTCCCTGGAGA...TAGGCAGAGCCTCTGCTTGGGGCTTTTCTGGAGCTGCTGATGGATAGTATCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CCA 90 bp ACAGTAAAGCCACTGCAGGTCTCACCTTGCACCCTACCAGAAGACATCTGGCTCCATTCTCCAGGGAGGTaGTGGTCTCCACCTTGCTGG +
Preference number: 4 (lower is better)
Translates to: TVKPLQVSPCTLPEDIWLHSPGR*WSPPCW
Trigger: CCAGCAAGGTGGAGACCACCACCTCCCTGGAGAATG...GAGCCAGATGTCTTCTGGTAGGGTGCAAGGTGAGACCTGCAGTGGCTTTACTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CCA 90 bp CCTTCCCTTCACCCTGAGGCTACAGGTAGGCCAGGCCCAATCACAGTAAAGCCACATCATCTGAGGCGATaGTCTCTGCCAGCTCCTTCA +
Preference number: 4 (lower is better)
Translates to: PSLHPEATGRPGPITVKPHHLRR*SLPAPS
Trigger: TGAAGGAGCTGGCAGAGACCATCGCCTCAGATGATG...TGGCTTTACTGTGATTGGGCCTGGCCTACCTGTAGCCTCAGGGTGAAGGGAAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CCA 90 bp GCCCCTTCCCTTCACCCTGAGGCTACAGGTAGGCCAGGCCCAATCACAGTAAAGTCCCGAACTTCATCCTaGCAGGACTCAGGAAATCGA +
Preference number: 4 (lower is better)
Translates to: APSLHPEATGRPGPITVKSRTSS*QDSGNR
Trigger: TCGATTTCCTGAGTCCTGCCAGGATGAAGTTCGGGA...CTTTACTGTGATTGGGCCTGGCCTACCTGTAGCCTCAGGGTGAAGGGAAGGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CCA 90 bp GGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTTGGCCTGTCCACTCTaGAAGAAGTGGAAGGCATCC +
Preference number: 4 (lower is better)
Translates to: GRHLPPQLELMPTHFTFVLACPL*KKWKAS
Trigger: GGATGCCTTCCACTTCTTCCAGAGTGGACAGGCCAA...CACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CCA 90 bp GGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTCCTTGGTTTTCTCATaGTCCTCACCGAGCTGCGTC +
Preference number: 4 (lower is better)
Translates to: GRHLPPQLELMPTHFTFVSLVFS*SSPSCV
Trigger: GACGCAGCTCGGTGAGGACCATGAGAAAACCAAGGA...CACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CCA 90 bp GGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTTCAAACCGGGGATCTaGCAGGAGAGCAGGAAAGCA +
Preference number: 4 (lower is better)
Translates to: GRHLPPQLELMPTHFTFVFKPGI*QESRKA
Trigger: TGCTTTCCTGCTCTCCTGCCAGATCCCCGGTTTGAA...CACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000117818.2
3UTR CAA 72 bp ACACACACACACATCTGCTTGATGCTGGGGAGGCACTaGCCCCCTCAGCTGGAGCTGATGCCTACACACTTT +
Preference number: 4 (lower is better)
Translates to: THTHICLMLGRH*PPQLELMPTHF
Trigger: AAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCCCAGCATCAAGCAGATGTGTGTGTGTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR TCA 90 bp GGGTGGCCATCTCCTTCAGGGACAGCAGACAAAGAGAAGCGACACAGGCAGGGATACAGTCAACTCCATTaGAGGCATCAGATGGGTCCA +
Preference number: 4 (lower is better)
Translates to: GWPSPSGTADKEKRHRQGYSQLH*RHQMGP
Trigger: TGGACCCATCTGATGCCTTCAATGGAGTTGACTGTA...TCCCTGCCTGTGTCGCTTCTCTTTGTCTGCTGTCCCTGAAGGAGATGGCCACCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR TCA 90 bp ATGCTGGGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTCCTGTAGATATGTCTTaGAGATGTGCTTGGCGGAGC +
Preference number: 4 (lower is better)
Translates to: MLGRHLPPQLELMPTHFTPVDMS*RCAWRS
Trigger: GCTCCGCCAAGCACATCTTCAAGACATATCTACAGG...AGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCCCAGCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR GCA 90 bp CAAGCAGAGGCTCTGCCTAAAACAGCTCCCTTAAGCTCAAAGGGTGGCCATCTCGGGAAAAGGGCTCGATaGCAGGGGCCAGAATCTTCA +
Preference number: 4 (lower is better)
Translates to: QAEALPKTAPLSSKGGHLGKRAR*QGPESS
Trigger: TGAAGATTCTGGCCCCTGGCATCGAGCCCTTTTCCC...GAGATGGCCACCCTTTGAGCTTAAGGGAGCTGTTTTAGGCAGAGCCTCTGCTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR GCA 90 bp ATGCTGGGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTTGCTGGCCTTCTGTTaGATCAACTGTAAGGCAGCC +
Preference number: 4 (lower is better)
Translates to: MLGRHLPPQLELMPTHFTLLAFC*INCKAA
Trigger: GGCTGCCTTACAGTTGATGCAACAGAAGGCCAGCAA...AGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCCCAGCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR GCA 90 bp GCCCCTTCCCTTCACCCTGAGGCTACAGGTAGGCCAGGCCCAATCACAGTAAAGGCATCTTTCAACAGCTaGTTCTGGTCCCGAACTTCA +
Preference number: 4 (lower is better)
Translates to: APSLHPEATGRPGPITVKASFNS*FWSRTS
Trigger: TGAAGTTCGGGACCAGAAGCAGCTGTTGAAAGATGC...CTTTACTGTGATTGGGCCTGGCCTACCTGTAGCCTCAGGGTGAAGGGAAGGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR GCA 90 bp GGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTATGTCTTGAAGATGTaGTTGGCGGAGCGGGTGATG +
Preference number: 4 (lower is better)
Translates to: GRHLPPQLELMPTHFTFVYVLKM*LAERVM
Trigger: CATCACCCGCTCCGCCAAGCACATCTTCAAGACATA...CACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR GCA 90 bp GGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGGCCTTGGGGTTGACATaGTTGACCACAGGGAAGATA +
Preference number: 4 (lower is better)
Translates to: GRHLPPQLELMPTHFTFVALGLT*LTTGKI
Trigger: TATCTTCCCTGTGGTCAAGCATGTCAACCCCAAGGC...CACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CCA 90 bp GGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGCCCATTTTCCCTAGGTaGCTCAGATGTCCCTTCTTC +
Preference number: 4 (lower is better)
Translates to: GRHLPPQLELMPTHFTFVPIFPR*LRCPFF
Trigger: GAAGAAGGGACATCTGAGCCACCTAGGGAAAATGGG...CACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CCA 90 bp CACACACATCTGCTTGATGCTGGGGAGGCACTTGCCCCCTCAGCTGGAGCTGATCGTAGCTCTGAAAAGTaGTCCAGCATATTGCCATCC +
Preference number: 4 (lower is better)
Translates to: HTHLLDAGEALAPSAGADRSSEK*SSILPS
Trigger: GGATGGCAATATGCTGGACCACTTTTCAGAGCTACG...ATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCCCAGCATCAAGCAGATGTGTGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CCA 90 bp CCTTCCCTTCACCCTGAGGCTACAGGTAGGCCAGGCCCAATCACAGTAAAGCCAAAGGTTGGGCTGATCTaGTTGAGCAGCTCTACTAGG +
Preference number: 4 (lower is better)
Translates to: PSLHPEATGRPGPITVKPKVGLI*LSSSTR
Trigger: CCTAGTAGAGCTGCTCAACCAGATCAGCCCAACCTT...TGGCTTTACTGTGATTGGGCCTGGCCTACCTGTAGCCTCAGGGTGAAGGGAAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CCA 90 bp GGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGAAGGTTGGGCTGATCTaGTTGAGCAGCTCTACTAGG +
Preference number: 4 (lower is better)
Translates to: GRHLPPQLELMPTHFTFVKVGLI*LSSSTR
Trigger: CCTAGTAGAGCTGCTCAACCAGATCAGCCCAACCTT...CACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CCA 90 bp ATGCTGGGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTGGTCTCCACCTTGCTaGCCTTCTGTTGCATCAACT +
Preference number: 4 (lower is better)
Translates to: MLGRHLPPQLELMPTHFTWSPPC*PSVAST
Trigger: AGTTGATGCAACAGAAGGCCAGCAAGGTGGAGACCA...AGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCCCAGCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CCA 90 bp GGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTGGTCTCCACCTTGCTaGCCTTCTGTTGCATCAACT +
Preference number: 4 (lower is better)
Translates to: GRHLPPQLELMPTHFTFVWSPPC*PSVAST
Trigger: AGTTGATGCAACAGAAGGCCAGCAAGGTGGAGACCA...CACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CCA 90 bp ATGCTGGGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTAAACAGTTCAGGAAGTaGCTGATGGCAGCTGAGAGG +
Preference number: 4 (lower is better)
Translates to: MLGRHLPPQLELMPTHFTKQFRK*LMAAER
Trigger: CCTCTCAGCTGCCATCAGCCACTTCCTGAACTGTTT...AGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCCCAGCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR TCA 90 bp GCCCCTTCCCTTCACCCTGAGGCTACAGGTAGGCCAGGCCCAATCACAGTAAAGGAAAAGCCTGTGTCCTaGATGACAATGACTTCCTGT +
Preference number: 4 (lower is better)
Translates to: APSLHPEATGRPGPITVKEKPVS*MTMTSC
Trigger: ACAGGAAGTCATTGTCATTCAGGACACAGGCTTTTC...CTTTACTGTGATTGGGCCTGGCCTACCTGTAGCCTCAGGGTGAAGGGAAGGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR TCA 90 bp ACAGTAAAGCCACTGCAGGTCTCACCTTGCACCCTACCAGAAGACATCTGGCTCAGATTTGGTCTCTGCTaGGGAGGGAAGGCCACCATT +
Preference number: 4 (lower is better)
Translates to: TVKPLQVSPCTLPEDIWLRFGLC*GGKATI
Trigger: AATGGTGGCCTTCCCTCCTCAGCAGAGACCAAATCT...GAGCCAGATGTCTTCTGGTAGGGTGCAAGGTGAGACCTGCAGTGGCTTTACTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR TCA 90 bp ACAGATACTATCCATCAGCAGCTCCAGAAAAGCCCCAAGCAGAGGCTCTGCCTATACTGTGCCATCATCTaGGGCGATGGTCTCTGCCAG +
Preference number: 4 (lower is better)
Translates to: TDTIHQQLQKSPKQRLCLYCAII*GDGLCQ
Trigger: CTGGCAGAGACCATCGCCTCAGATGATGGCACAGTA...TAGGCAGAGCCTCTGCTTGGGGCTTTTCTGGAGCTGCTGATGGATAGTATCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR GCA 90 bp ATGGATGTGTGGGGTCTACCACTGCTGGCCCCTTCCCTTCACCCTGAGGCTACAGCTGTGAAATCACTGTaGACCTTGAATATGGCTCGT +
Preference number: 4 (lower is better)
Translates to: MDVWGLPLLAPSLHPEATAVKSL*TLNMAR
Trigger: ACGAGCCATATTCAAGGTGCACAGTGATTTCACAGC...TGTAGCCTCAGGGTGAAGGGAAGGGGCCAGCAGTGGTAGACCCCACACATCCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR GCA 90 bp CCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTCTTCAATTAGGCCTCGAGGCCACTCACACTaGTGCCCTCCTCCTCACATC +
Preference number: 4 (lower is better)
Translates to: PQLELMPTHFTFVSSIRPRGHSH*CPPPHI
Trigger: GATGTGAGGAGGAGGGCAGCAGTGTGAGTGGCCTCG...AGGCCTAATTGAAGACACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR GCA 90 bp CCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTCTTCAATTAGGCCTCCAGGCAGTGTTGTCTaGAGCTCCTGGGGGCCTGTT +
Preference number: 4 (lower is better)
Translates to: PQLELMPTHFTFVSSIRPPGSVV*SSWGPV
Trigger: AACAGGCCCCCAGGAGCTGCAGACAACACTGCCTGG...AGGCCTAATTGAAGACACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR GCA 90 bp CAAGCAGAGGCTCTGCCTAAAACAGCTCCCTTAAGCTCAAAGGGTGGCCATCTCTGTAGTGACAGCCAGTaGGTTCTCCAAGAAGCGCAG +
Preference number: 4 (lower is better)
Translates to: QAEALPKTAPLSSKGGHLCSDSQ*VLQEAQ
Trigger: CTGCGCTTCTTGGAGAACGCACTGGCTGTCACTACA...GAGATGGCCACCCTTTGAGCTTAAGGGAGCTGTTTTAGGCAGAGCCTCTGCTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR GCA 90 bp CCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTCTTCAATTAGGCCTTCATTCATGGTGCGCTaGAGGGCCACAGCCTGCTGG +
Preference number: 4 (lower is better)
Translates to: PQLELMPTHFTFVSSIRPSFMVR*RATACW
Trigger: CCAGCAGGCTGTGGCCCTGCAGCGCACCATGAATGA...AGGCCTAATTGAAGACACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR GCA 90 bp ACAGATACTATCCATCAGCAGCTCCAGAAAAGCCCCAAGCAGAGGCTCTGCCTAAGATCTCATTCATGGTaGGCTGCAGGGCCACAGCCT +
Preference number: 4 (lower is better)
Translates to: TDTIHQQLQKSPKQRLCLRSHSW*AAGPQP
Trigger: AGGCTGTGGCCCTGCAGCGCACCATGAATGAGATCT...TAGGCAGAGCCTCTGCTTGGGGCTTTTCTGGAGCTGCTGATGGATAGTATCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR GCA 90 bp CCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTCTTCAATTAGGCCTGAGCTGGTGTCGCCGTaGCACCTCTGCCTTCAGGTT +
Preference number: 4 (lower is better)
Translates to: PQLELMPTHFTFVSSIRPELVSP*HLCLQV
Trigger: AACCTGAAGGCAGAGGTGGCACGGCGACACCAGCTC...AGGCCTAATTGAAGACACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CCA 90 bp ACAAGGTCCCTGGACAGATACTATCCATCAGCAGCTCCAGAAAAGCCCCAAGCACACCATTCAGGTCATTaGTGGGTGCCACGTAGGCTG +
Preference number: 4 (lower is better)
Translates to: TRSLDRYYPSAAPEKPQAHHSGH*WVPRRL
Trigger: CAGCCTACGTGGCACCCACCAATGACCTGAATGGTG...TGCTTGGGGCTTTTCTGGAGCTGCTGATGGATAGTATCTGTCCAGGGACCTTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CCA 90 bp CCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTCTTCAATTAGGCCTTCTCCAGGGAGGTGGTaGTCTCCACCTTGCTGGCCT +
Preference number: 4 (lower is better)
Translates to: PQLELMPTHFTFVSSIRPSPGRW*SPPCWP
Trigger: AGGCCAGCAAGGTGGAGACCACCACCTCCCTGGAGA...AGGCCTAATTGAAGACACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CCA 90 bp ATGGATGTGTGGGGTCTACCACTGCTGGCCCCTTCCCTTCACCCTGAGGCTACATCTTGTTCCTTTTCTTaGAGAGCAGCTCATCAGCAG +
Preference number: 4 (lower is better)
Translates to: MDVWGLPLLAPSLHPEATSCSFS*RAAHQQ
Trigger: CTGCTGATGAGCTGCTCTCCAAGAAAAGGAACAAGA...TGTAGCCTCAGGGTGAAGGGAAGGGGCCAGCAGTGGTAGACCCCACACATCCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CCA 90 bp ATGCTGGGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTGCTGCGTCTTGTAGATaGTGTAACCCTCCTTCTCAT +
Preference number: 4 (lower is better)
Translates to: MLGRHLPPQLELMPTHFTAASCR*CNPPSH
Trigger: ATGAGAAGGAGGGTTACACCATCTACAAGACGCAGC...AGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCCCAGCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR TCA 90 bp CCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTCTTCAATTAGGCCTGCACAGGAAGGAAGTTaGGGTCTGGTGGGAAGGTGC +
Preference number: 4 (lower is better)
Translates to: PQLELMPTHFTFVSSIRPAQEGS*GLVGRC
Trigger: GCACCTTCCCACCAGACCTCAACTTCCTTCCTGTGC...AGGCCTAATTGAAGACACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR TCA 90 bp ACAGATACTATCCATCAGCAGCTCCAGAAAAGCCCCAAGCAGAGGCTCTGCCTAAGGCAGCCAGCTTCATaGAGAGAAGGTACCTGTGCT +
Preference number: 4 (lower is better)
Translates to: TDTIHQQLQKSPKQRLCLRQPAS*REGTCA
Trigger: AGCACAGGTACCTTCTCTTCATGAAGCTGGCTGCCT...TAGGCAGAGCCTCTGCTTGGGGCTTTTCTGGAGCTGCTGATGGATAGTATCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR TCA 90 bp GGGTGGCCATCTCCTTCAGGGACAGCAGACAAAGAGAAGCGACACAGGCAGGGATGCTTCAGGTCCTATTaGATCTTCAGATTTGGTCTC +
Preference number: 4 (lower is better)
Translates to: GWPSPSGTADKEKRHRQGCFRSY*IFRFGL
Trigger: GAGACCAAATCTGAAGATTCAATAGGACCTGAAGCA...TCCCTGCCTGTGTCGCTTCTCTTTGTCTGCTGTCCCTGAAGGAGATGGCCACCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR GCA 90 bp GGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGAGTGGTCCAGCATATTaGCATCCAAGTGTAGTGAGA +
Preference number: 4 (lower is better)
Translates to: GRHLPPQLELMPTHFTFVSGPAY*HPSVVR
Trigger: TCTCACTACACTTGGATGGCAATATGCTGGACCACT...CACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR GCA 90 bp GCCCCTTCCCTTCACCCTGAGGCTACAGGTAGGCCAGGCCCAATCACAGTAAAGTGGACCCTTTTCTTCTaGAGCACAGCAAAGTTCTTT +
Preference number: 4 (lower is better)
Translates to: APSLHPEATGRPGPITVKWTLFF*STAKFF
Trigger: AAAGAACTTTGCTGTGCTGCAGAAGAAAAGGGTCCA...CTTTACTGTGATTGGGCCTGGCCTACCTGTAGCCTCAGGGTGAAGGGAAGGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR GCA 90 bp GGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGGCTGTGAAATCACTGTaGACCTTGAATATGGCTCGT +
Preference number: 4 (lower is better)
Translates to: GRHLPPQLELMPTHFTFVAVKSL*TLNMAR
Trigger: ACGAGCCATATTCAAGGTGCACAGTGATTTCACAGC...CACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CCA 90 bp CCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTCTTCAATTAGGCCTGGCGATCCTCTCGAATaGGTGGCGCTGGACCCTTTT +
Preference number: 4 (lower is better)
Translates to: PQLELMPTHFTFVSSIRPGDPLE*VALDPF
Trigger: AAAAGGGTCCAGCGCCACCCATTCGAGAGGATCGCC...AGGCCTAATTGAAGACACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CCA 90 bp CCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTCTTCAATTAGGCCTATGGCATGCTCTGCCTaGGGGGCTGTCCAGCTGTAT +
Preference number: 4 (lower is better)
Translates to: PQLELMPTHFTFVSSIRPMACSA*GAVQLY
Trigger: ATACAGCTGGACAGCCCCCCAGGCAGAGCATGCCAT...AGGCCTAATTGAAGACACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CCA 90 bp GCCCCTTCCCTTCACCCTGAGGCTACAGGTAGGCCAGGCCCAATCACAGTAAAGTTGAATCTTCAGATTTaGTCTCTGCTGAGGAGGGAA +
Preference number: 4 (lower is better)
Translates to: APSLHPEATGRPGPITVKLNLQI*SLLRRE
Trigger: TTCCCTCCTCAGCAGAGACCAAATCTGAAGATTCAA...CTTTACTGTGATTGGGCCTGGCCTACCTGTAGCCTCAGGGTGAAGGGAAGGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CCA 90 bp ATGCTGGGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTCTTGTTCCTTTTCTTaGAGAGCAGCTCATCAGCAG +
Preference number: 4 (lower is better)
Translates to: MLGRHLPPQLELMPTHFTSCSFS*RAAHQQ
Trigger: CTGCTGATGAGCTGCTCTCCAAGAAAAGGAACAAGA...AGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCCCAGCAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CCA 90 bp ACAGATACTATCCATCAGCAGCTCCAGAAAAGCCCCAAGCAGAGGCTCTGCCTATTGGCCTGTCCACTCTaGAAGAAGTGGAAGGCATCC +
Preference number: 4 (lower is better)
Translates to: TDTIHQQLQKSPKQRLCLLACPL*KKWKAS
Trigger: GGATGCCTTCCACTTCTTCCAGAGTGGACAGGCCAA...TAGGCAGAGCCTCTGCTTGGGGCTTTTCTGGAGCTGCTGATGGATAGTATCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CCA 90 bp CCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTCTTCAATTAGGCCTTTTCTGTTGGCCTCTTaGAGCTGGTGTCGCCGTGCC +
Preference number: 4 (lower is better)
Translates to: PQLELMPTHFTFVSSIRPFLLAS*SWCRRA
Trigger: GGCACGGCGACACCAGCTCCAAGAGGCCAACAGAAA...AGGCCTAATTGAAGACACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR TCA 90 bp ATGCTGGGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTGCTTCAGGTCCTATTaGATCTTCAGATTTGGTCTC +
Preference number: 4 (lower is better)
Translates to: MLGRHLPPQLELMPTHFTCFRSY*IFRFGL
Trigger: GAGACCAAATCTGAAGATTCAATAGGACCTGAAGCA...AGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCCCAGCAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR GCA 90 bp CCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTCTTCAATTAGGCCTGGGAAAAGGGCTCGATaGCAGGGGCCAGAATCTTCA +
Preference number: 4 (lower is better)
Translates to: PQLELMPTHFTFVSSIRPGKRAR*QGPESS
Trigger: TGAAGATTCTGGCCCCTGGCATCGAGCCCTTTTCCC...AGGCCTAATTGAAGACACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR GCA 90 bp CCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTCTTCAATTAGGCCTGCAGTGATGCTGACTTaGCGGTCCTCAGCAGTGATC +
Preference number: 4 (lower is better)
Translates to: PQLELMPTHFTFVSSIRPAVMLT*RSSAVI
Trigger: GATCACTGCTGAGGACCGGCAAGTCAGCATCACTGC...AGGCCTAATTGAAGACACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR GCA 90 bp GGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTGGACCCTTTTCTTCTaGAGCACAGCAAAGTTCTTT +
Preference number: 4 (lower is better)
Translates to: GRHLPPQLELMPTHFTFVWTLFF*STAKFF
Trigger: AAAGAACTTTGCTGTGCTGCAGAAGAAAAGGGTCCA...CACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CCA 90 bp CCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTCTTCAATTAGGCCTATACCTGGAACGGGGTaGCGATCCTCTCGAATGGGT +
Preference number: 4 (lower is better)
Translates to: PQLELMPTHFTFVSSIRPIPGTG*RSSRMG
Trigger: ACCCATTCGAGAGGATCGCCACCCCGTTCCAGGTAT...AGGCCTAATTGAAGACACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CCA 90 bp GGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTTGAATCTTCAGATTTaGTCTCTGCTGAGGAGGGAA +
Preference number: 4 (lower is better)
Translates to: GRHLPPQLELMPTHFTFVLNLQI*SLLRRE
Trigger: TTCCCTCCTCAGCAGAGACCAAATCTGAAGATTCAA...CACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CCA 90 bp CCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTCTTCAATTAGGCCTTTCTTCCAGAGCTCTTaGGGGGTCATCACAGCCCAG +
Preference number: 4 (lower is better)
Translates to: PQLELMPTHFTFVSSIRPFFQSS*GVITAQ
Trigger: CTGGGCTGTGATGACCCCCCAAGAGCTCTGGAAGAA...AGGCCTAATTGAAGACACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CCA 90 bp CCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTCTTCAATTAGGCCTCCACTCTGGAAGAAGTaGAAGGCATCCGACGCCTTG +
Preference number: 4 (lower is better)
Translates to: PQLELMPTHFTFVSSIRPPLWKK*KASDAL
Trigger: CAAGGCGTCGGATGCCTTCCACTTCTTCCAGAGTGG...AGGCCTAATTGAAGACACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CCA 90 bp GGGTGGCCATCTCCTTCAGGGACAGCAGACAAAGAGAAGCGACACAGGCAGGGATTTTCCAAGTCTTTTTaGCTGAGAGGAATGAAGAGG +
Preference number: 4 (lower is better)
Translates to: GWPSPSGTADKEKRHRQGFSKSF*LRGMKR
Trigger: CCTCTTCATTCCTCTCAGCCAAAAAGACTTGGAAAA...TCCCTGCCTGTGTCGCTTCTCTTTGTCTGCTGTCCCTGAAGGAGATGGCCACCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR TCA 90 bp CCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTCTTCAATTAGGCCTAATGCCATCTCAGGGTaGTCCTCCCCAAACACAAGC +
Preference number: 4 (lower is better)
Translates to: PQLELMPTHFTFVSSIRPNAISG*SSPNTS
Trigger: GCTTGTGTTTGGGGAGGATCACCCTGAGATGGCATT...AGGCCTAATTGAAGACACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR GCA 90 bp ACAGTAAAGCCACTGCAGGTCTCACCTTGCACCCTACCAGAAGACATCTGGCTCAGTGGTCCAGCATATTaGCATCCAAGTGTAGTGAGA +
Preference number: 4 (lower is better)
Translates to: TVKPLQVSPCTLPEDIWLSGPAY*HPSVVR
Trigger: TCTCACTACACTTGGATGGCAATATGCTGGACCACT...GAGCCAGATGTCTTCTGGTAGGGTGCAAGGTGAGACCTGCAGTGGCTTTACTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR GCA 90 bp CAAGCAGAGGCTCTGCCTAAAACAGCTCCCTTAAGCTCAAAGGGTGGCCATCTCAAGAGAAGGTACCTGTaGTCCACAAAAGCATCCACT +
Preference number: 4 (lower is better)
Translates to: QAEALPKTAPLSSKGGHLKRRYL*STKAST
Trigger: AGTGGATGCTTTTGTGGAGCACAGGTACCTTCTCTT...GAGATGGCCACCCTTTGAGCTTAAGGGAGCTGTTTTAGGCAGAGCCTCTGCTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR GCA 90 bp CAAGCAGAGGCTCTGCCTAAAACAGCTCCCTTAAGCTCAAAGGGTGGCCATCTCGTTGTTATCCAACAATaGCATCTCAGGGTGATCCTC +
Preference number: 4 (lower is better)
Translates to: QAEALPKTAPLSSKGGHLVVIQQ*HLRVIL
Trigger: GAGGATCACCCTGAGATGGCATTGTTGGATAACAAC...GAGATGGCCACCCTTTGAGCTTAAGGGAGCTGTTTTAGGCAGAGCCTCTGCTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR GCA 90 bp CCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTCTTCAATTAGGCCTACCGGAACTCAGCTTTaGTCTCATAAACCCGCGCGA +
Preference number: 4 (lower is better)
Translates to: PQLELMPTHFTFVSSIRPTGTQL*SHKPAR
Trigger: TCGCGCGGGTTTATGAGAGCAAAGCTGAGTTCCGGT...AGGCCTAATTGAAGACACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CCA 90 bp CCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTCTTCAATTAGGCCTATCCTCTCGAATGGGTaGCGCTGGACCCTTTTCTTC +
Preference number: 4 (lower is better)
Translates to: PQLELMPTHFTFVSSIRPILSNG*RWTLFF
Trigger: GAAGAAAAGGGTCCAGCGCCACCCATTCGAGAGGAT...AGGCCTAATTGAAGACACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CCA 90 bp CCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTCTTCAATTAGGCCTCATCATCTGAGGCGATaGTCTCTGCCAGCTCCTTCA +
Preference number: 4 (lower is better)
Translates to: PQLELMPTHFTFVSSIRPHHLRR*SLPAPS
Trigger: TGAAGGAGCTGGCAGAGACCATCGCCTCAGATGATG...AGGCCTAATTGAAGACACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CCA 90 bp CCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTCTTCAATTAGGCCTAGCCCTGCTGTACTTTaGCCTGTCCACTCTGGAAGA +
Preference number: 4 (lower is better)
Translates to: PQLELMPTHFTFVSSIRPSPAVL*PVHSGR
Trigger: TCTTCCAGAGTGGACAGGCCAAAGTACAGCAGGGCT...AGGCCTAATTGAAGACACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CCA 90 bp ATGCTGGGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTTTTCCAAGTCTTTTTaGCTGAGAGGAATGAAGAGG +
Preference number: 4 (lower is better)
Translates to: MLGRHLPPQLELMPTHFTFSKSF*LRGMKR
Trigger: CCTCTTCATTCCTCTCAGCCAAAAAGACTTGGAAAA...AGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCCCAGCAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR TCA 90 bp ACAAGGTCCCTGGACAGATACTATCCATCAGCAGCTCCAGAAAAGCCCCAAGCAAGAAGATGTCAGGATTaGAGCGAATATCAAAGGCCG +
Preference number: 4 (lower is better)
Translates to: TRSLDRYYPSAAPEKPQARRCQD*SEYQRP
Trigger: CGGCCTTTGATATTCGCTTCAATCCTGACATCTTCT...TGCTTGGGGCTTTTCTGGAGCTGCTGATGGATAGTATCTGTCCAGGGACCTTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR GCA 90 bp CCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTCTTCAATTAGGCCTAGCTCCCTTGTTGTCTaGAGCTCTTCATTCCAGTCC +
Preference number: 4 (lower is better)
Translates to: PQLELMPTHFTFVSSIRPSSLVV*SSSFQS
Trigger: GGACTGGAATGAAGAGCTGCAGACAACAAGGGAGCT...AGGCCTAATTGAAGACACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR GCA 90 bp CCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTCTTCAATTAGGCCTTTGCTGGCCTTCTGTTaGATCAACTGTAAGGCAGCC +
Preference number: 4 (lower is better)
Translates to: PQLELMPTHFTFVSSIRPLLAFC*INCKAA
Trigger: GGCTGCCTTACAGTTGATGCAACAGAAGGCCAGCAA...AGGCCTAATTGAAGACACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR GCA 90 bp CCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTCTTCAATTAGGCCTTACTCCATTACTCCATaGAGCACCAGCCCGATGTTG +
Preference number: 4 (lower is better)
Translates to: PQLELMPTHFTFVSSIRPYSITP*STSPML
Trigger: CAACATCGGGCTGGTGCTGCATGGAGTAATGGAGTA...AGGCCTAATTGAAGACACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CCA 90 bp CCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTCTTCAATTAGGCCTTCCCGAACTTCATCCTaGCAGGACTCAGGAAATCGA +
Preference number: 4 (lower is better)
Translates to: PQLELMPTHFTFVSSIRPSRTSS*QDSGNR
Trigger: TCGATTTCCTGAGTCCTGCCAGGATGAAGTTCGGGA...AGGCCTAATTGAAGACACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CCA 90 bp CCTTCCCTTCACCCTGAGGCTACAGGTAGGCCAGGCCCAATCACAGTAAAGCCAAGTCAAAGTAGTTTTTaGCCTCATGGCATATGTTCT +
Preference number: 4 (lower is better)
Translates to: PSLHPEATGRPGPITVKPSQSSF*PHGICS
Trigger: AGAACATATGCCATGAGGCCAAAAACTACTTTGACT...TGGCTTTACTGTGATTGGGCCTGGCCTACCTGTAGCCTCAGGGTGAAGGGAAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CCA 90 bp GGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGAGTCAAAGTAGTTTTTaGCCTCATGGCATATGTTCT +
Preference number: 4 (lower is better)
Translates to: GRHLPPQLELMPTHFTFVSQSSF*PHGICS
Trigger: AGAACATATGCCATGAGGCCAAAAACTACTTTGACT...CACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR GCA 90 bp CCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTCTTCAATTAGGCCTGCATCTTTCAACAGCTaGTTCTGGTCCCGAACTTCA +
Preference number: 4 (lower is better)
Translates to: PQLELMPTHFTFVSSIRPASFNS*FWSRTS
Trigger: TGAAGTTCGGGACCAGAAGCAGCTGTTGAAAGATGC...AGGCCTAATTGAAGACACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CCA 90 bp CCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTCTTCAATTAGGCCTCGTAGCTCTGAAAAGTaGTCCAGCATATTGCCATCC +
Preference number: 4 (lower is better)
Translates to: PQLELMPTHFTFVSSIRPRSSEK*SSILPS
Trigger: GGATGGCAATATGCTGGACCACTTTTCAGAGCTACG...AGGCCTAATTGAAGACACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR TCA 90 bp CCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTCTTCAATTAGGCCTGAAAAGCCTGTGTCCTaGATGACAATGACTTCCTGT +
Preference number: 4 (lower is better)
Translates to: PQLELMPTHFTFVSSIRPEKPVS*MTMTSC
Trigger: ACAGGAAGTCATTGTCATTCAGGACACAGGCTTTTC...AGGCCTAATTGAAGACACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR TCA 90 bp CCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTCTTCAATTAGGCCTAGAAGATGTCAGGATTaGAGCGAATATCAAAGGCCG +
Preference number: 4 (lower is better)
Translates to: PQLELMPTHFTFVSSIRPRRCQD*SEYQRP
Trigger: CGGCCTTTGATATTCGCTTCAATCCTGACATCTTCT...AGGCCTAATTGAAGACACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR GCA 90 bp CCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTCTTCAATTAGGCCTAAGAGAAGGTACCTGTaGTCCACAAAAGCATCCACT +
Preference number: 4 (lower is better)
Translates to: PQLELMPTHFTFVSSIRPKRRYL*STKAST
Trigger: AGTGGATGCTTTTGTGGAGCACAGGTACCTTCTCTT...AGGCCTAATTGAAGACACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR GCA 90 bp CCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTCTTCAATTAGGCCTGTTGTTATCCAACAATaGCATCTCAGGGTGATCCTC +
Preference number: 4 (lower is better)
Translates to: PQLELMPTHFTFVSSIRPVVIQQ*HLRVIL
Trigger: GAGGATCACCCTGAGATGGCATTGTTGGATAACAAC...AGGCCTAATTGAAGACACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS TCA 90 bp GAGGAGCAGAGCTCCACCTCCTCGTCTCGGTCATTGAGTACTCGGTaGCGAAGGATCTTGAGGGGCCGGCTGGTGCGCTCCAACAGCTCC +
Preference number: 5 (lower is better)
Translates to: EEQSSTSSSRSLSTR*RRILRGRLVRSNSS
Trigger: GGAGCTGTTGGAGCGCACCAGCCGGCCCCTCAAGATCCTTCGTCACCGAGTACTCAATGACCGAGACGAGGAGGTGGAGCTCTGCTCCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS CCA 90 bp TTCCTTGGCAGTCTGAGGGGAGCCCATGTCCTCCACGGCTCTCTCTaGCTCAGGCTCAGGCTCGGGGGCCATGGGTTGTTCTTCAGCCTT +
Preference number: 5 (lower is better)
Translates to: FLGSLRGAHVLHGSL*LRLRLGGHGLFFSL
Trigger: AAGGCTGAAGAACAACCCATGGCCCCCGAGCCTGAGCCTGAGCCAGAGAGAGCCGTGGAGGACATGGGCTCCCCTCAGACTGCCAAGGAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CAA 90 bp CACTGCAGGTCTCACCTTGCACCCTACCAGAAGACATCTGGCTCCCCCTCCCAGAGGTCCCCATGCATCTaGCGGTTCCCAGGAGGTGGG +
Preference number: 5 (lower is better)
Translates to: HCRSHLAPYQKTSGSPSQRSPCI*RFPGGG
Trigger: CCCACCTCCTGGGAACCGCAAGATGCATGGGGACCT...CTGGGAGGGGGAGCCAGATGTCTTCTGGTAGGGTGCAAGGTGAGACCTGCAGTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CAA 90 bp CCTGTGCATAGCACTTTCCCTGGGATCCACAATTCAGCCCTGGGTCCCCACCCCCGCTCAGGCAGGTTCTaGCGGGGCAGCTCCCTTGTT +
Preference number: 5 (lower is better)
Translates to: PVHSTFPGIHNSALGPHPRSGRF*RGSSLV
Trigger: AACAAGGGAGCTGCCCCGCAAGAACCTGCCTGAGCG...GGGGTGGGGACCCAGGGCTGAATTGTGGATCCCAGGGAAAGTGCTATGCACAGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CAA 90 bp CCTGTGCATAGCACTTTCCCTGGGATCCACAATTCAGCCCTGGGTCCCCACCCCCCCAGGTATCGCATGTaGATGCCACGCTGGCGCATC +
Preference number: 5 (lower is better)
Translates to: PVHSTFPGIHNSALGPHPPRYRM*MPRWRI
Trigger: GATGCGCCAGCGTGGCATCAACATGCGATACCTGGG...GGGGTGGGGACCCAGGGCTGAATTGTGGATCCCAGGGAAAGTGCTATGCACAGG
61% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CAA 90 bp CTGCAGGTCTCACCTTGCACCCTACCAGAAGACATCTGGCTCCCCCTCCCAGGACAGCACGGCCTTCTGTaGATTGCTGAGGGCCTCAGC +
Preference number: 5 (lower is better)
Translates to: LQVSPCTLPEDIWLPLPGQHGLL*IAEGLS
Trigger: GCTGAGGCCCTCAGCAATCAACAGAAGGCCGTGCTG...TCCTGGGAGGGGGAGCCAGATGTCTTCTGGTAGGGTGCAAGGTGAGACCTGCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS GCA 90 bp AGCAACCGCTCAGGCAGGTTCTTGCGGGGCAGCTCCCTTGTTGTCTaGAGCTCTTCATTCCAGTCCCGGGTCTGTCCAGGAATGTGCTCC +
Preference number: 5 (lower is better)
Translates to: SNRSGRFLRGSSLVV*SSSFQSRVCPGMCS
Trigger: GGAGCACATTCCTGGACAGACCCGGGACTGGAATGAAGAGCTGCAGACAACAAGGGAGCTGCCCCGCAAGAACCTGCCTGAGCGGTTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CAA 90 bp GGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGAGGTCCCCATGCATCTaGCGGTTCCCAGGAGGTGGG +
Preference number: 5 (lower is better)
Translates to: GRHLPPQLELMPTHFTFVRSPCI*RFPGGG
Trigger: CCCACCTCCTGGGAACCGCAAGATGCATGGGGACCT...CACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS TCA 90 bp CTTCTTCCTTCTTCAAATTCTCTGAGCAGTCACCATTCAACAGCATaGCCGAGGGGAGATCAGCCGCGTTCGGCCGCCCCTTGCCGCCGG +
Preference number: 5 (lower is better)
Translates to: LLPSSNSLSSHHSTA*PRGDQPRSAAPCRR
Trigger: CCGGCGGCAAGGGGCGGCCGAACGCGGCTGATCTCCCCTCGGTCATGCTGTTGAATGGTGACTGCTCAGAGAATTTGAAGAAGGAAGAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS GCA 90 bp CCTCGGCCAGTGTGGCCCCATCCATGGGCAGCACAGCATACTCTGTaGAATCCTTTACCAAACCGGGGATCTGGCAGGAGAGCAGGAAAG +
Preference number: 5 (lower is better)
Translates to: PRPVWPHPWAAQHTL*NPLPNRGSGRRAGK
Trigger: CTTTCCTGCTCTCCTGCCAGATCCCCGGTTTGGTAAAGGATTGCACAGAGTATGCTGTGCTGCCCATGGATGGGGCCACACTGGCCGAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CAA 90 bp ATGGATGTGTGGGGTCTACCACTGCTGGCCCCTTCCCTTCACCCTGAGGCTACAGTCTTGAAGATGTGCTaGGCGGAGCGGGTGATGAGC +
Preference number: 5 (lower is better)
Translates to: MDVWGLPLLAPSLHPEATVLKMC*AERVMS
Trigger: GCTCATCACCCGCTCCGCCAAGCACATCTTCAAGAC...TGTAGCCTCAGGGTGAAGGGAAGGGGCCAGCAGTGGTAGACCCCACACATCCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CAA 90 bp GGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTCCGACGCCTTGGGGTaGACATGCTTGACCACAGGG +
Preference number: 5 (lower is better)
Translates to: GRHLPPQLELMPTHFTFVSDALG*TCLTTG
Trigger: CCCTGTGGTCAAGCATGTCAACCCCAAGGCGTCGGA...CACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CAA 90 bp ATGCTGGGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTCAGCACGGCCTTCTGTaGATTGCTGAGGGCCTCAGC +
Preference number: 5 (lower is better)
Translates to: MLGRHLPPQLELMPTHFTQHGLL*IAEGLS
Trigger: GCTGAGGCCCTCAGCAATCAACAGAAGGCCGTGCTG...AGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCCCAGCAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CAA 90 bp GGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGGTTTCTGTTGGCCTCTaGGAGCTGGTGTCGCCGTGC +
Preference number: 5 (lower is better)
Translates to: GRHLPPQLELMPTHFTFVVSVGL*ELVSPC
Trigger: GCACGGCGACACCAGCTCCAAGAGGCCAACAGAAAC...CACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CAA 90 bp ATGCTGGGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTGTTTCTGTTGGCCTCTaGGAGCTGGTGTCGCCGTGC +
Preference number: 5 (lower is better)
Translates to: MLGRHLPPQLELMPTHFTVSVGL*ELVSPC
Trigger: GCACGGCGACACCAGCTCCAAGAGGCCAACAGAAAC...AGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCCCAGCAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS TCA 90 bp AGGTGCGCAGTAGGTCAAGGATGTAGTGGCGCCCATCATTGCCAATaGTGCCCTTACACTCGACCGAGGAGCAGAGCTCCACCTCCTCGT +
Preference number: 5 (lower is better)
Translates to: RCAVGQGCSGAHHCQ*CPYTRPRSRAPPPR
Trigger: ACGAGGAGGTGGAGCTCTGCTCCTCGGTCGAGTGTAAGGGCATCATTGGCAATGATGGGCGCCACTACATCCTTGACCTACTGCGCACCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS CCA 90 bp TGGTCTCTGCTGAGGAGGGAAGGCCACCATTCTCCAGGGAGGTGGTaGTCTCCACCTTGCTGGCCTTCTGTTGCATCAACTGTAAGGCAG +
Preference number: 5 (lower is better)
Translates to: WSLLRREGHHSPGRW*SPPCWPSVASTVRQ
Trigger: CTGCCTTACAGTTGATGCAACAGAAGGCCAGCAAGGTGGAGACCACCACCTCCCTGGAGAATGGTGGCCTTCCCTCCTCAGCAGAGACCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS CCA 90 bp CTCTCCGATGCCGATTTTATAAATGTGGTCCAGCTGGTCTCGGGCTaGGCTCCGCAGCACCAGATCCAGCACCTTGCCCAGGTATCGCAT +
Preference number: 5 (lower is better)
Translates to: LSDADFINVVQLVSG*APQHQIQHLAQVSH
Trigger: ATGCGATACCTGGGCAAGGTGCTGGATCTGGTGCTGCGGAGCCCAGCCCGAGACCAGCTGGACCACATTTATAAAATCGGCATCGGAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CAA 90 bp ATGCTGGGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTGGGGCAGCTCCCTTGTaGTCTGCAGCTCTTCATTCC +
Preference number: 5 (lower is better)
Translates to: MLGRHLPPQLELMPTHFTGAAPL*SAALHS
Trigger: GGAATGAAGAGCTGCAGACAACAAGGGAGCTGCCCC...AGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCCCAGCAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CAA 90 bp GGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTGCGGGGCAGCTCCCTaGTTGTCTGCAGCTCTTCAT +
Preference number: 5 (lower is better)
Translates to: GRHLPPQLELMPTHFTFVCGAAP*LSAALH
Trigger: ATGAAGAGCTGCAGACAACAAGGGAGCTGCCCCGCA...CACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CAA 90 bp ATGGATGTGTGGGGTCTACCACTGCTGGCCCCTTCCCTTCACCCTGAGGCTACATCAGTGAAGGCAGGCTaGTGGCGGCTATCAAAGCTG +
Preference number: 5 (lower is better)
Translates to: MDVWGLPLLAPSLHPEATSVKAG*WRLSKL
Trigger: CAGCTTTGATAGCCGCCACAAGCCTGCCTTCACTGA...TGTAGCCTCAGGGTGAAGGGAAGGGGCCAGCAGTGGTAGACCCCACACATCCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CAA 90 bp GGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGAAGGCATCCGACGCCTaGGGGTTGACATGCTTGACC +
Preference number: 5 (lower is better)
Translates to: GRHLPPQLELMPTHFTFVKASDA*GLTCLT
Trigger: GGTCAAGCATGTCAACCCCAAGGCGTCGGATGCCTT...CACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CAA 90 bp CACACACATCTGCTTGATGCTGGGGAGGCACTTGCCCCCTCAGCTGGAGCTGATCTGGGAGCTGTGAACTaGAGGGGTGGGATATTGGCA +
Preference number: 5 (lower is better)
Translates to: HTHLLDAGEALAPSAGADLGAVN*RGGILA
Trigger: TGCCAATATCCCACCCCTCAAGTTCACAGCTCCCAG...ATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCCCAGCATCAAGCAGATGTGTGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS CCA 90 bp TTCAGGAAGCCCTGCTGTACTTTGGCCTGTCCACTCTGGAAGAAGTaGAAGGCATCCGACGCCTTGGGGTTGACATGCTTGACCACAGGG +
Preference number: 5 (lower is better)
Translates to: FRKPCCTLACPLWKK*KASDALGLTCLTTG
Trigger: CCCTGTGGTCAAGCATGTCAACCCCAAGGCGTCGGATGCCTTCCACTTCTTCCAGAGTGGACAGGCCAAAGTACAGCAGGGCTTCCTGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS CCA 90 bp CAGCCCTCTTTCAGGAAGCCCTGCTGTACTTTGGCCTGTCCACTCTaGAAGAAGTGGAAGGCATCCGACGCCTTGGGGTTGACATGCTTG +
Preference number: 5 (lower is better)
Translates to: QPSFRKPCCTLACPL*KKWKASDALGLTCL
Trigger: CAAGCATGTCAACCCCAAGGCGTCGGATGCCTTCCACTTCTTCCAGAGTGGACAGGCCAAAGTACAGCAGGGCTTCCTGAAAGAGGGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CAA 90 bp ATGCTGGGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTATGGAGCCAACAGCCTaGCAGGCATTTCGGATCACC +
Preference number: 5 (lower is better)
Translates to: MLGRHLPPQLELMPTHFTMEPTA*QAFRIT
Trigger: GGTGATCCGAAATGCCTGCAAGGCTGTTGGCTCCAT...AGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCCCAGCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CAA 90 bp GGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGGCCACCTTAAGGGCCTaGGGCCCATGGTACTTTGTA +
Preference number: 5 (lower is better)
Translates to: GRHLPPQLELMPTHFTFVATLRA*GPWYFV
Trigger: TACAAAGTACCATGGGCCCAAGGCCCTTAAGGTGGC...CACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CAA 90 bp ATGCTGGGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTCTGGGAGCTGTGAACTaGAGGGGTGGGATATTGGCA +
Preference number: 5 (lower is better)
Translates to: MLGRHLPPQLELMPTHFTLGAVN*RGGILA
Trigger: TGCCAATATCCCACCCCTCAAGTTCACAGCTCCCAG...AGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCCCAGCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CAA 90 bp CCTGTGCATAGCACTTTCCCTGGGATCCACAATTCAGCCCTGGGTCCCCACCCCAAGTGGTCCAGCATATaGCCATCCAAGTGTAGTGAG +
Preference number: 5 (lower is better)
Translates to: PVHSTFPGIHNSALGPHPKWSSI*PSKCSE
Trigger: CTCACTACACTTGGATGGCAATATGCTGGACCACTT...GGGGTGGGGACCCAGGGCTGAATTGTGGATCCCAGGGAAAGTGCTATGCACAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CAA 90 bp ATGCTGGGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTGTTGGGCTGATCTGGTaGAGCAGCTCTACTAGGGAA +
Preference number: 5 (lower is better)
Translates to: MLGRHLPPQLELMPTHFTVGLIW*SSSTRE
Trigger: TTCCCTAGTAGAGCTGCTCAACCAGATCAGCCCAAC...AGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCCCAGCAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CAA 90 bp ACAGTAAAGCCACTGCAGGTCTCACCTTGCACCCTACCAGAAGACATCTGGCTCGGGGCAGCTCCCTTGTaGTCTGCAGCTCTTCATTCC +
Preference number: 5 (lower is better)
Translates to: TVKPLQVSPCTLPEDIWLGAAPL*SAALHS
Trigger: GGAATGAAGAGCTGCAGACAACAAGGGAGCTGCCCC...GAGCCAGATGTCTTCTGGTAGGGTGCAAGGTGAGACCTGCAGTGGCTTTACTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CAA 90 bp ACAAGGTCCCTGGACAGATACTATCCATCAGCAGCTCCAGAAAAGCCCCAAGCATCCGACGCCTTGGGGTaGACATGCTTGACCACAGGG +
Preference number: 5 (lower is better)
Translates to: TRSLDRYYPSAAPEKPQASDALG*TCLTTG
Trigger: CCCTGTGGTCAAGCATGTCAACCCCAAGGCGTCGGA...TGCTTGGGGCTTTTCTGGAGCTGCTGATGGATAGTATCTGTCCAGGGACCTTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS GCA 90 bp CACCTTAAGGGCCTTGGGCCCATGGTACTTTGTAGTGACAGCCAGTaGGTTCTCCAAGAAGCGCAGGGACAGGTCATACTCCATTACTCC +
Preference number: 5 (lower is better)
Translates to: HLKGLGPMVLCSDSQ*VLQEAQGQVILHYS
Trigger: GGAGTAATGGAGTATGACCTGTCCCTGCGCTTCTTGGAGAACGCACTGGCTGTCACTACAAAGTACCATGGGCCCAAGGCCCTTAAGGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CAA 90 bp CCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTCTTCAATTAGGCCTCGCTCAGGCAGGTTCTaGCGGGGCAGCTCCCTTGTT +
Preference number: 5 (lower is better)
Translates to: PQLELMPTHFTFVSSIRPRSGRF*RGSSLV
Trigger: AACAAGGGAGCTGCCCCGCAAGAACCTGCCTGAGCG...AGGCCTAATTGAAGACACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CAA 90 bp CTGCAGGTCTCACCTTGCACCCTACCAGAAGACATCTGGCTCCCCCTCCCAGGATTGATGGCCATCACATaGCCATCAATAACTGCCATG +
Preference number: 5 (lower is better)
Translates to: LQVSPCTLPEDIWLPLPGLMAIT*PSITAM
Trigger: CATGGCAGTTATTGATGGCAATGTGATGGCCATCAA...TCCTGGGAGGGGGAGCCAGATGTCTTCTGGTAGGGTGCAAGGTGAGACCTGCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CAA 90 bp CAAGCAGAGGCTCTGCCTAAAACAGCTCCCTTAAGCTCAAAGGGTGGCCATCTCATGGAGCCAACAGCCTaGCAGGCATTTCGGATCACC +
Preference number: 5 (lower is better)
Translates to: QAEALPKTAPLSSKGGHLMEPTA*QAFRIT
Trigger: GGTGATCCGAAATGCCTGCAAGGCTGTTGGCTCCAT...GAGATGGCCACCCTTTGAGCTTAAGGGAGCTGTTTTAGGCAGAGCCTCTGCTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CAA 90 bp ATGCTGGGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTCCCTGTAGATATGTCTaGAAGATGTGCTTGGCGGAG +
Preference number: 5 (lower is better)
Translates to: MLGRHLPPQLELMPTHFTPCRYV*KMCLAE
Trigger: CTCCGCCAAGCACATCTTCAAGACATATCTACAGGG...AGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCCCAGCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CAA 90 bp GCCCCTTCCCTTCACCCTGAGGCTACAGGTAGGCCAGGCCCAATCACAGTAAAGACCACAGGGAAGATATaGAGCACATCTTCCTCAGTG +
Preference number: 5 (lower is better)
Translates to: APSLHPEATGRPGPITVKTTGKI*STSSSV
Trigger: CACTGAGGAAGATGTGCTCAATATCTTCCCTGTGGT...CTTTACTGTGATTGGGCCTGGCCTACCTGTAGCCTCAGGGTGAAGGGAAGGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CAA 90 bp GGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGATGCCATTGATGACATaGAGCTGCTCCAGGACACTG +
Preference number: 5 (lower is better)
Translates to: GRHLPPQLELMPTHFTFVMPLMT*SCSRTL
Trigger: CAGTGTCCTGGAGCAGCTCAATGTCATCAATGGCAT...CACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS GCA 90 bp GGCCATCACATTGCCATCAATAACTGCCATGGCACCCCTTGTGGCTaGCGCTGTGAAATCACTGTGCACCTTGAATATGGCTCGTTCTCG +
Preference number: 5 (lower is better)
Translates to: GHHIAINNCHGTPCG*RCEITVHLEYGSFS
Trigger: CGAGAACGAGCCATATTCAAGGTGCACAGTGATTTCACAGCGGCAGCCACAAGGGGTGCCATGGCAGTTATTGATGGCAATGTGATGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS GCA 90 bp GAGAGGCCTGAGAGCTCCACTCCCTGTAGATATGTCTTGAAGATGTaGTTGGCGGAGCGGGTGATGAGCTCTCCGATGCCGATTTTCAAA +
Preference number: 5 (lower is better)
Translates to: ERPESSTPCRYVLKM*LAERVMSSPMPIFK
Trigger: TTTGAAAATCGGCATCGGAGAGCTCATCACCCGCTCCGCCAAGCACATCTTCAAGACATATCTACAGGGAGTGGAGCTCTCAGGCCTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117818.2
CDS-3UTR CAA 90 bp ATGCTGGGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTAAGTGGTCCAGCATATaGCCATCCAAGTGTAGTGAG +
Preference number: 5 (lower is better)
Translates to: MLGRHLPPQLELMPTHFTKWSSI*PSKCSE
Trigger: CTCACTACACTTGGATGGCAATATGCTGGACCACTT...AGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCCCAGCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CAA 90 bp ACAAGGTCCCTGGACAGATACTATCCATCAGCAGCTCCAGAAAAGCCCCAAGCATGCAGTGATGCTGACTaGCCGGTCCTCAGCAGTGAT +
Preference number: 5 (lower is better)
Translates to: TRSLDRYYPSAAPEKPQACSDAD*PVLSSD
Trigger: ATCACTGCTGAGGACCGGCAAGTCAGCATCACTGCA...TGCTTGGGGCTTTTCTGGAGCTGCTGATGGATAGTATCTGTCCAGGGACCTTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CAA 90 bp ACAGTAAAGCCACTGCAGGTCTCACCTTGCACCCTACCAGAAGACATCTGGCTCGTTGGGCTGATCTGGTaGAGCAGCTCTACTAGGGAA +
Preference number: 5 (lower is better)
Translates to: TVKPLQVSPCTLPEDIWLVGLIW*SSSTRE
Trigger: TTCCCTAGTAGAGCTGCTCAACCAGATCAGCCCAAC...GAGCCAGATGTCTTCTGGTAGGGTGCAAGGTGAGACCTGCAGTGGCTTTACTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CAA 90 bp CACACACATCTGCTTGATGCTGGGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGAGAAGATGTCAGGATaGAAGCGAATATCAAAGGCC +
Preference number: 5 (lower is better)
Translates to: HTHLLDAGEALAPSAGADEKMSG*KRISKA
Trigger: GGCCTTTGATATTCGCTTCAATCCTGACATCTTCTC...ATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCCCAGCATCAAGCAGATGTGTGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CAA 90 bp ATGCTGGGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTCTCTTGTTCCTTTTCTaGGAGAGCAGCTCATCAGCA +
Preference number: 5 (lower is better)
Translates to: MLGRHLPPQLELMPTHFTLLFLF*ESSSSA
Trigger: TGCTGATGAGCTGCTCTCCAAGAAAAGGAACAAGAG...AGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCCCAGCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CAA 90 bp GGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGACCACAGGGAAGATATaGAGCACATCTTCCTCAGTG +
Preference number: 5 (lower is better)
Translates to: GRHLPPQLELMPTHFTFVTTGKI*STSSSV
Trigger: CACTGAGGAAGATGTGCTCAATATCTTCCCTGTGGT...CACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CAA 90 bp GGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTTGGGGTTGACATGCTaGACCACAGGGAAGATATTG +
Preference number: 5 (lower is better)
Translates to: GRHLPPQLELMPTHFTFVLGLTC*TTGKIL
Trigger: CAATATCTTCCCTGTGGTCAAGCATGTCAACCCCAA...CACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CAA 90 bp ACAAGGTCCCTGGACAGATACTATCCATCAGCAGCTCCAGAAAAGCCCCAAGCAAAGCCCTGCTGTACTTaGGCCTGTCCACTCTGGAAG +
Preference number: 5 (lower is better)
Translates to: TRSLDRYYPSAAPEKPQAKPCCT*ACPLWK
Trigger: CTTCCAGAGTGGACAGGCCAAAGTACAGCAGGGCTT...TGCTTGGGGCTTTTCTGGAGCTGCTGATGGATAGTATCTGTCCAGGGACCTTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS TCA 90 bp TTCCCTAGGTGGCTCAGATGTCCCTTCTTCCTTCTTCAAATTCTCTaGGCAGTCACCATTCAACAGCATGACCGAGGGGAGATCAGCCGC +
Preference number: 5 (lower is better)
Translates to: FPRWLRCPFFLLQIL*AVTIQQHDRGEISR
Trigger: GCGGCTGATCTCCCCTCGGTCATGCTGTTGAATGGTGACTGCTCAGAGAATTTGAAGAAGGAAGAAGGGACATCTGAGCCACCTAGGGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CAA 90 bp GGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGATTGAATCTTCAGATTaGGTCTCTGCTGAGGAGGGA +
Preference number: 5 (lower is better)
Translates to: GRHLPPQLELMPTHFTFVIESSD*VSAEEG
Trigger: TCCCTCCTCAGCAGAGACCAAATCTGAAGATTCAAT...CACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CAA 90 bp CCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTCTTCAATTAGGCCTGTCTTGAAGATGTGCTaGGCGGAGCGGGTGATGAGC +
Preference number: 5 (lower is better)
Translates to: PQLELMPTHFTFVSSIRPVLKMC*AERVMS
Trigger: GCTCATCACCCGCTCCGCCAAGCACATCTTCAAGAC...AGGCCTAATTGAAGACACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CAA 90 bp ACAGTAAAGCCACTGCAGGTCTCACCTTGCACCCTACCAGAAGACATCTGGCTCCCCTGTAGATATGTCTaGAAGATGTGCTTGGCGGAG +
Preference number: 5 (lower is better)
Translates to: TVKPLQVSPCTLPEDIWLPCRYV*KMCLAE
Trigger: CTCCGCCAAGCACATCTTCAAGACATATCTACAGGG...GAGCCAGATGTCTTCTGGTAGGGTGCAAGGTGAGACCTGCAGTGGCTTTACTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CAA 90 bp CAAGCAGAGGCTCTGCCTAAAACAGCTCCCTTAAGCTCAAAGGGTGGCCATCTCCTCTTGTTCCTTTTCTaGGAGAGCAGCTCATCAGCA +
Preference number: 5 (lower is better)
Translates to: QAEALPKTAPLSSKGGHLLLFLF*ESSSSA
Trigger: TGCTGATGAGCTGCTCTCCAAGAAAAGGAACAAGAG...GAGATGGCCACCCTTTGAGCTTAAGGGAGCTGTTTTAGGCAGAGCCTCTGCTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CAA 90 bp CCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTCTTCAATTAGGCCTTCAGTGAAGGCAGGCTaGTGGCGGCTATCAAAGCTG +
Preference number: 5 (lower is better)
Translates to: PQLELMPTHFTFVSSIRPSVKAG*WRLSKL
Trigger: CAGCTTTGATAGCCGCCACAAGCCTGCCTTCACTGA...AGGCCTAATTGAAGACACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CAA 90 bp CCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTCTTCAATTAGGCCTAAGCCCTGCTGTACTTaGGCCTGTCCACTCTGGAAG +
Preference number: 5 (lower is better)
Translates to: PQLELMPTHFTFVSSIRPKPCCT*ACPLWK
Trigger: CTTCCAGAGTGGACAGGCCAAAGTACAGCAGGGCTT...AGGCCTAATTGAAGACACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CAA 90 bp CCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTCTTCAATTAGGCCTGCCACCTTAAGGGCCTaGGGCCCATGGTACTTTGTA +
Preference number: 5 (lower is better)
Translates to: PQLELMPTHFTFVSSIRPATLRA*GPWYFV
Trigger: TACAAAGTACCATGGGCCCAAGGCCCTTAAGGTGGC...AGGCCTAATTGAAGACACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CAA 90 bp GGGAGGCACTTGCCCCCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGGTTTTCCAAGTCTTTTaGGCTGAGAGGAATGAAGAG +
Preference number: 5 (lower is better)
Translates to: GRHLPPQLELMPTHFTFVVFQVF*AERNEE
Trigger: CTCTTCATTCCTCTCAGCCAAAAAGACTTGGAAAAC...CACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGGGGGCAAGTGCCTCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS TCA 90 bp ATCAAAGCTGTATTCCTTCAGCAGAATCTGGATCCCGGTTTTCAGTaGGATCTCCCGCAGCAGTGTTATCTTCTGCAGCCCGTAGGTCTC +
Preference number: 5 (lower is better)
Translates to: IKAVFLQQNLDPGFQ*DLPQQCYLLQPVGL
Trigger: GAGACCTACGGGCTGCAGAAGATAACACTGCTGCGGGAGATCTCACTGAAAACCGGGATCCAGATTCTGCTGAAGGAATACAGCTTTGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS CCA 90 bp ACAGGGAAGATATTGAGCACATCTTCCTCAGTGAAGGCAGGCTTGTaGCGGCTATCAAAGCTGTATTCCTTCAGCAGAATCTGGATCCCG +
Preference number: 5 (lower is better)
Translates to: TGKILSTSSSVKAGL*RLSKLYSFSRIWIP
Trigger: CGGGATCCAGATTCTGCTGAAGGAATACAGCTTTGATAGCCGCCACAAGCCTGCCTTCACTGAGGAAGATGTGCTCAATATCTTCCCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CAA 90 bp ACAAGGTCCCTGGACAGATACTATCCATCAGCAGCTCCAGAAAAGCCCCAAGCATTGGGGTTGACATGCTaGACCACAGGGAAGATATTG +
Preference number: 5 (lower is better)
Translates to: TRSLDRYYPSAAPEKPQALGLTC*TTGKIL
Trigger: CAATATCTTCCCTGTGGTCAAGCATGTCAACCCCAA...TGCTTGGGGCTTTTCTGGAGCTGCTGATGGATAGTATCTGTCCAGGGACCTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CAA 90 bp ACAAGGTCCCTGGACAGATACTATCCATCAGCAGCTCCAGAAAAGCCCCAAGCAGTTTTCCAAGTCTTTTaGGCTGAGAGGAATGAAGAG +
Preference number: 5 (lower is better)
Translates to: TRSLDRYYPSAAPEKPQAVFQVF*AERNEE
Trigger: CTCTTCATTCCTCTCAGCCAAAAAGACTTGGAAAAC...TGCTTGGGGCTTTTCTGGAGCTGCTGATGGATAGTATCTGTCCAGGGACCTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS-3UTR CAA 90 bp CCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTCTTCAATTAGGCCTTTGATGGCCATCACATaGCCATCAATAACTGCCATG +
Preference number: 5 (lower is better)
Translates to: PQLELMPTHFTFVSSIRPLMAIT*PSITAM
Trigger: CATGGCAGTTATTGATGGCAATGTGATGGCCATCAA...AGGCCTAATTGAAGACACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CAA 90 bp CCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTCTTCAATTAGGCCTATTGAATCTTCAGATTaGGTCTCTGCTGAGGAGGGA +
Preference number: 5 (lower is better)
Translates to: PQLELMPTHFTFVSSIRPIESSD*VSAEEG
Trigger: TCCCTCCTCAGCAGAGACCAAATCTGAAGATTCAAT...AGGCCTAATTGAAGACACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS-3UTR CAA 90 bp CCTCAGCTGGAGCTGATGCCTACACACTTTACTTTCGTGTCTTCAATTAGGCCTGAGAAGATGTCAGGATaGAAGCGAATATCAAAGGCC +
Preference number: 5 (lower is better)
Translates to: PQLELMPTHFTFVSSIRPEKMSG*KRISKA
Trigger: GGCCTTTGATATTCGCTTCAATCCTGACATCTTCTC...AGGCCTAATTGAAGACACGAAAGTAAAGTGTGTAGGCATCAGCTCCAGCTGAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS CAA 72 bp TCTCGGGCTGGGCTCCGCAGCACCAGATCCAGCACCTaGCCCAGGTATCGCATGTTGATGCCACGCTGGCGC +
Preference number: 6 (lower is better)
Translates to: SRAGLRSTRSST*PRYRMLMPRWR
Trigger: GCGCCAGCGTGGCATCAACATGCGATACCTGGGCAAGGTGCTGGATCTGGTGCTGCGGAGCCCAGCCCGAGA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS CAA 90 bp TCCAGCTGGTCTCGGGCTGGGCTCCGCAGCACCAGATCCAGCACCTaGCCCAGGTATCGCATGTTGATGCCACGCTGGCGCATCACCTCG +
Preference number: 6 (lower is better)
Translates to: SSWSRAGLRSTRSST*PRYRMLMPRWRITS
Trigger: CGAGGTGATGCGCCAGCGTGGCATCAACATGCGATACCTGGGCAAGGTGCTGGATCTGGTGCTGCGGAGCCCAGCCCGAGACCAGCTGGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS TCA 72 bp AGCTCCACCTCCTCGTCTCGGTCATTGAGTACTCGGTaGCGAAGGATCTTGAGGGGCCGGCTGGTGCGCTCC +
Preference number: 6 (lower is better)
Translates to: SSTSSSRSLSTR*RRILRGRLVRS
Trigger: GGAGCGCACCAGCCGGCCCCTCAAGATCCTTCGTCACCGAGTACTCAATGACCGAGACGAGGAGGTGGAGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS CCA 72 bp GGGCCGGCTGGTGCGCTCCAACAGCTCCAGATAGCGTaGGTGAGACACCACCGTCTTGCCAAAGTCAATGGA +
Preference number: 6 (lower is better)
Translates to: GPAGALQQLQIA*VRHHRLAKVNG
Trigger: TCCATTGACTTTGGCAAGACGGTGGTGTCTCACCCACGCTATCTGGAGCTGTTGGAGCGCACCAGCCGGCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS GCA 72 bp TCAGGCAGGTTCTTGCGGGGCAGCTCCCTTGTTGTCTaGAGCTCTTCATTCCAGTCCCGGGTCTGTCCAGGA +
Preference number: 6 (lower is better)
Translates to: SGRFLRGSSLVV*SSSFQSRVCPG
Trigger: TCCTGGACAGACCCGGGACTGGAATGAAGAGCTGCAGACAACAAGGGAGCTGCCCCGCAAGAACCTGCCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS CCA 72 bp GCTGTATACCTGGAACGGGGTGGCGATCCTCTCGAATaGGTGGCGCTGGACCCTTTTCTTCTGCAGCACAGC +
Preference number: 6 (lower is better)
Translates to: AVYLERGGDPLE*VALDPFLLQHS
Trigger: GCTGTGCTGCAGAAGAAAAGGGTCCAGCGCCACCCATTCGAGAGGATCGCCACCCCGTTCCAGGTATACAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS CCA 72 bp GCTGGCGCATCACCTCGGCCAGTGTGGCCCCATCCATaGGCAGCACAGCATACTCTGTGCAATCCTTTACCA +
Preference number: 6 (lower is better)
Translates to: AGASPRPVWPHP*AAQHTLCNPLP
Trigger: TGGTAAAGGATTGCACAGAGTATGCTGTGCTGCCCATGGATGGGGCCACACTGGCCGAGGTGATGCGCCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS CCA 72 bp GCCGATTTTATAAATGTGGTCCAGCTGGTCTCGGGCTaGGCTCCGCAGCACCAGATCCAGCACCTTGCCCAG +
Preference number: 6 (lower is better)
Translates to: ADFINVVQLVSG*APQHQIQHLAQ
Trigger: CTGGGCAAGGTGCTGGATCTGGTGCTGCGGAGCCCAGCCCGAGACCAGCTGGACCACATTTATAAAATCGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS CCA 72 bp CGGCTCTCTCTGGCTCAGGCTCAGGCTCGGGGGCCATaGGTTGTTCTTCAGCCTTATCCCTGTTTCTGTTGG +
Preference number: 6 (lower is better)
Translates to: RLSLAQAQARGP*VVLQPYPCFCW
Trigger: CCAACAGAAACAGGGATAAGGCTGAAGAACAACCCATGGCCCCCGAGCCTGAGCCTGAGCCAGAGAGAGCCG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS GCA 72 bp GGCCGTGGACTGATTCAGGTAGAAGCCCCTCGTCGATaGAGTGATGCTGACTTGCCGGTCCTCAGCAGTGAT +
Preference number: 6 (lower is better)
Translates to: GRGLIQVEAPRR*SDADLPVLSSD
Trigger: ATCACTGCTGAGGACCGGCAAGTCAGCATCACTGCATCGACGAGGGGCTTCTACCTGAATCAGTCCACGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS CAA 72 bp AAAGCATCCACTAGCTCCTGGCGCAAACAGCACAGCTaGTGTCGATGGGTTCGGGGGAAGCCAGCTCGAGAG +
Preference number: 6 (lower is better)
Translates to: KASTSSWRKQHS*CRWVRGKPARE
Trigger: CTCTCGAGCTGGCTTCCCCCGAACCCATCGACACAAGCTGTGCTGTTTGCGCCAGGAGCTAGTGGATGCTTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS GCA 72 bp GTGTGGCCCCATCCATGGGCAGCACAGCATACTCTGTaGAATCCTTTACCAAACCGGGGATCTGGCAGGAGA +
Preference number: 6 (lower is better)
Translates to: VWPHPWAAQHTL*NPLPNRGSGRR
Trigger: TCTCCTGCCAGATCCCCGGTTTGGTAAAGGATTGCACAGAGTATGCTGTGCTGCCCATGGATGGGGCCACAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092915.12
CDS GCA 72 bp GAGAGCTCCACTCCCTGTAGATATGTCTTGAAGATGTaGTTGGCGGAGCGGGTGATGAGCTCTCCGATGCCG +
Preference number: 6 (lower is better)
Translates to: ESSTPCRYVLKM*LAERVMSSPMP
Trigger: CGGCATCGGAGAGCTCATCACCCGCTCCGCCAAGCACATCTTCAAGACATATCTACAGGGAGTGGAGCTCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS CCA 72 bp CCCTGCTGTACTTTGGCCTGTCCACTCTGGAAGAAGTaGAAGGCATCCGACGCCTTGGGGTTGACATGCTTG +
Preference number: 6 (lower is better)
Translates to: PCCTLACPLWKK*KASDALGLTCL
Trigger: CAAGCATGTCAACCCCAAGGCGTCGGATGCCTTCCACTTCTTCCAGAGTGGACAGGCCAAAGTACAGCAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS TCA 72 bp GTAGGTCAAGGATGTAGTGGCGCCCATCATTGCCAATaGTGCCCTTACACTCGACCGAGGAGCAGAGCTCCA +
Preference number: 6 (lower is better)
Translates to: VGQGCSGAHHCQ*CPYTRPRSRAP
Trigger: TGGAGCTCTGCTCCTCGGTCGAGTGTAAGGGCATCATTGGCAATGATGGGCGCCACTACATCCTTGACCTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS CCA 72 bp TTTTCTCATGGTCCTCACCGAGCTGCGTCTTGTAGATaGTGTAACCCTCCTTCTCATGCTGGAGGGCCGACC +
Preference number: 6 (lower is better)
Translates to: FSHGPHRAASCR*CNPPSHAGGPT
Trigger: GGTCGGCCCTCCAGCATGAGAAGGAGGGTTACACCATCTACAAGACGCAGCTCGGTGAGGACCATGAGAAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS CAA 90 bp CCCTCCTCCTCACATCCTGCTTCAGGTCCTATTGAATCTTCAGATTaGGTCTCTGCTGAGGAGGGAAGGCCACCATTCTCCAGGGAGGTG +
Preference number: 6 (lower is better)
Translates to: PSSSHPASGPIESSD*VSAEEGRPPFSREV
Trigger: CACCTCCCTGGAGAATGGTGGCCTTCCCTCCTCAGCAGAGACCAAATCTGAAGATTCAATAGGACCTGAAGCAGGATGTGAGGAGGAGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS CAA 90 bp GCATCCGACGCCTTGGGGTTGACATGCTTGACCACAGGGAAGATATaGAGCACATCTTCCTCAGTGAAGGCAGGCTTGTGGCGGCTATCA +
Preference number: 6 (lower is better)
Translates to: ASDALGLTCLTTGKI*STSSSVKAGLWRLS
Trigger: TGATAGCCGCCACAAGCCTGCCTTCACTGAGGAAGATGTGCTCAATATCTTCCCTGTGGTCAAGCATGTCAACCCCAAGGCGTCGGATGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS CAA 90 bp AGGCCTGAGAGCTCCACTCCCTGTAGATATGTCTTGAAGATGTGCTaGGCGGAGCGGGTGATGAGCTCTCCGATGCCGATTTTCAAACCG +
Preference number: 6 (lower is better)
Translates to: RPESSTPCRYVLKMC*AERVMSSPMPIFKP
Trigger: CGGTTTGAAAATCGGCATCGGAGAGCTCATCACCCGCTCCGCCAAGCACATCTTCAAGACATATCTACAGGGAGTGGAGCTCTCAGGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117818.2
CDS GCA 72 bp ACTGGGGTTGATGGCCATCACATTGCCATCAATAACTaGCATGGCACCCCTTGTGGCTGCCGCTGTGAAATC +
Preference number: 6 (lower is better)
Translates to: TGVDGHHIAINN*HGTPCGCRCEI
Trigger: GATTTCACAGCGGCAGCCACAAGGGGTGCCATGGCAGTTATTGATGGCAATGTGATGGCCATCAACCCCAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS CAA 90 bp CACTCACACTGCTGCCCTCCTCCTCACATCCTGCTTCAGGTCCTATaGAATCTTCAGATTTGGTCTCTGCTGAGGAGGGAAGGCCACCAT +
Preference number: 6 (lower is better)
Translates to: HSHCCPPPHILLQVL*NLQIWSLLRREGHH
Trigger: ATGGTGGCCTTCCCTCCTCAGCAGAGACCAAATCTGAAGATTCAATAGGACCTGAAGCAGGATGTGAGGAGGAGGGCAGCAGTGTGAGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS CCA 72 bp TCCTGCAGCCCCTCCACACTGCGTAGCTCTGAAAAGTaGTCCAGCATATTGCCATCCAAGTGTAGTGAGAAG +
Preference number: 6 (lower is better)
Translates to: SCSPSTLRSSEK*SSILPSKCSEK
Trigger: CTTCTCACTACACTTGGATGGCAATATGCTGGACCACTTTTCAGAGCTACGCAGTGTGGAGGGGCTGCAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS CCA 72 bp TTTTTGGCCTCATGGCATATGTTCTTCCAGAGCTCTTaGGGGGTCATCACAGCCCAGGCAGTGTTGTCTGCA +
Preference number: 6 (lower is better)
Translates to: FLASWHMFFQSS*GVITAQAVLSA
Trigger: TGCAGACAACACTGCCTGGGCTGTGATGACCCCCCAAGAGCTCTGGAAGAACATATGCCATGAGGCCAAAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS CCA 72 bp ATGAGCTCTCCGATGCCGATTTTCAAACCGGGGATCTaGCAGGAGAGCAGGAAAGCAGCAGCATCTTTCAAC +
Preference number: 6 (lower is better)
Translates to: MSSPMPIFKPGI*QESRKAAASFN
Trigger: GTTGAAAGATGCTGCTGCTTTCCTGCTCTCCTGCCAGATCCCCGGTTTGAAAATCGGCATCGGAGAGCTCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117818.2
CDS CAA 72 bp CTCTGGAAGAAGTGGAAGGCATCCGACGCCTTGGGGTaGACATGCTTGACCACAGGGAAGATATTGAGCACA +
Preference number: 6 (lower is better)
Translates to: LWKKWKASDALG*TCLTTGKILST
Trigger: TGTGCTCAATATCTTCCCTGTGGTCAAGCATGTCAACCCCAAGGCGTCGGATGCCTTCCACTTCTTCCAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS CAA 72 bp TGTCCACTCTGGAAGAAGTGGAAGGCATCCGACGCCTaGGGGTTGACATGCTTGACCACAGGGAAGATATTG +
Preference number: 6 (lower is better)
Translates to: CPLWKKWKASDA*GLTCLTTGKIL
Trigger: CAATATCTTCCCTGTGGTCAAGCATGTCAACCCCAAGGCGTCGGATGCCTTCCACTTCTTCCAGAGTGGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS CAA 90 bp ACTTTGGCCTGTCCACTCTGGAAGAAGTGGAAGGCATCCGACGCCTaGGGGTTGACATGCTTGACCACAGGGAAGATATTGAGCACATCT +
Preference number: 6 (lower is better)
Translates to: TLACPLWKKWKASDA*GLTCLTTGKILSTS
Trigger: AGATGTGCTCAATATCTTCCCTGTGGTCAAGCATGTCAACCCCAAGGCGTCGGATGCCTTCCACTTCTTCCAGAGTGGACAGGCCAAAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS TCA 72 bp GTATTCCTTCAGCAGAATCTGGATCCCGGTTTTCAGTaGGATCTCCCGCAGCAGTGTTATCTTCTGCAGCCC +
Preference number: 6 (lower is better)
Translates to: VFLQQNLDPGFQ*DLPQQCYLLQP
Trigger: GGGCTGCAGAAGATAACACTGCTGCGGGAGATCTCACTGAAAACCGGGATCCAGATTCTGCTGAAGGAATAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS GCA 72 bp ATTGCCATCAATAACTGCCATGGCACCCCTTGTGGCTaGCGCTGTGAAATCACTGTGCACCTTGAATATGGC +
Preference number: 6 (lower is better)
Translates to: IAINNCHGTPCG*RCEITVHLEYG
Trigger: GCCATATTCAAGGTGCACAGTGATTTCACAGCGGCAGCCACAAGGGGTGCCATGGCAGTTATTGATGGCAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS CAA 72 bp TCAGGAAATCGAACCCCTGGGGAGAAGATGTCAGGATaGAAGCGAATATCAAAGGCCGTGCTGCTGATGGAG +
Preference number: 6 (lower is better)
Translates to: SGNRTPGEKMSG*KRISKAVLLME
Trigger: CTCCATCAGCAGCACGGCCTTTGATATTCGCTTCAATCCTGACATCTTCTCCCCAGGGGTTCGATTTCCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS CAA 72 bp AAGTGGAAGGCATCCGACGCCTTGGGGTTGACATGCTaGACCACAGGGAAGATATTGAGCACATCTTCCTCA +
Preference number: 6 (lower is better)
Translates to: KWKASDALGLTC*TTGKILSTSSS
Trigger: TGAGGAAGATGTGCTCAATATCTTCCCTGTGGTCAAGCATGTCAACCCCAAGGCGTCGGATGCCTTCCACTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS TCA 72 bp TGGCTCAGATGTCCCTTCTTCCTTCTTCAAATTCTCTaGGCAGTCACCATTCAACAGCATGACCGAGGGGAG +
Preference number: 6 (lower is better)
Translates to: WLRCPFFLLQIL*AVTIQQHDRGE
Trigger: CTCCCCTCGGTCATGCTGTTGAATGGTGACTGCTCAGAGAATTTGAAGAAGGAAGAAGGGACATCTGAGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS CCA 72 bp CACATCCTGCTTCAGGTCCTATTGAATCTTCAGATTTaGTCTCTGCTGAGGAGGGAAGGCCACCATTCTCCA +
Preference number: 6 (lower is better)
Translates to: HILLQVLLNLQI*SLLRREGHHSP
Trigger: TGGAGAATGGTGGCCTTCCCTCCTCAGCAGAGACCAAATCTGAAGATTCAATAGGACCTGAAGCAGGATGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS CAA 72 bp ACAGCAAAGTTCTTTTTGAAGGTTGGGCTGATCTGGTaGAGCAGCTCTACTAGGGAATGGCTGAGGAAGCGG +
Preference number: 6 (lower is better)
Translates to: TAKFFLKVGLIW*SSSTREWLRKR
Trigger: CCGCTTCCTCAGCCATTCCCTAGTAGAGCTGCTCAACCAGATCAGCCCAACCTTCAAAAAGAACTTTGCTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS CAA 72 bp TCACATCCTGCTTCAGGTCCTATTGAATCTTCAGATTaGGTCTCTGCTGAGGAGGGAAGGCCACCATTCTCC +
Preference number: 6 (lower is better)
Translates to: SHPASGPIESSD*VSAEEGRPPFS
Trigger: GGAGAATGGTGGCCTTCCCTCCTCAGCAGAGACCAAATCTGAAGATTCAATAGGACCTGAAGCAGGATGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS CAA 90 bp ACCACAGGGAAGATATTGAGCACATCTTCCTCAGTGAAGGCAGGCTaGTGGCGGCTATCAAAGCTGTATTCCTTCAGCAGAATCTGGATC +
Preference number: 6 (lower is better)
Translates to: TTGKILSTSSSVKAG*WRLSKLYSFSRIWI
Trigger: GATCCAGATTCTGCTGAAGGAATACAGCTTTGATAGCCGCCACAAGCCTGCCTTCACTGAGGAAGATGTGCTCAATATCTTCCCTGTGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS TCA 72 bp CCTTCTGTTGCATCAACTGTAAGGCAGCCAGCTTCATaGAGAGAAGGTACCTGTGCTCCACAAAAGCATCCA +
Preference number: 6 (lower is better)
Translates to: PSVASTVRQPAS*REGTCAPQKHP
Trigger: TGGATGCTTTTGTGGAGCACAGGTACCTTCTCTTCATGAAGCTGGCTGCCTTACAGTTGATGCAACAGAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS TCA 72 bp TCTCCACAGCCTGGTCCACAGAATCACACTCAAGGGTaGAGTCAAAGTAGTTTTTGGCCTCATGGCATATGT +
Preference number: 6 (lower is better)
Translates to: SPQPGPQNHTQG*SQSSFWPHGIC
Trigger: ACATATGCCATGAGGCCAAAAACTACTTTGACTTCACCCTTGAGTGTGATTCTGTGGACCAGGCTGTGGAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS CCA 72 bp ATATTGAGCACATCTTCCTCAGTGAAGGCAGGCTTGTaGCGGCTATCAAAGCTGTATTCCTTCAGCAGAATC +
Preference number: 6 (lower is better)
Translates to: ILSTSSSVKAGL*RLSKLYSFSRI
Trigger: GATTCTGCTGAAGGAATACAGCTTTGATAGCCGCCACAAGCCTGCCTTCACTGAGGAAGATGTGCTCAATAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2
CDS CAA 72 bp AAGATATTGAGCACATCTTCCTCAGTGAAGGCAGGCTaGTGGCGGCTATCAAAGCTGTATTCCTTCAGCAGA +
Preference number: 6 (lower is better)
Translates to: KILSTSSSVKAG*WRLSKLYSFSR
Trigger: TCTGCTGAAGGAATACAGCTTTGATAGCCGCCACAAGCCTGCCTTCACTGAGGAAGATGTGCTCAATATCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092915.12
ENSMUST00000117818.2