Pregenerated sensors for CLTRN (Mus musculus)
Ensembl gene IDs: ENSMUSG00000015401Ensembl transcript IDs: ENSMUST00000015545.10, ENSMUST00000112280.8, ENSMUST00000141818.2
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | AGGATGTGTACAAATTGCAGGCAACAACAAATAGATCTGCTTGCCCTACTAAAGCCAGACGGGCACAGATaGCTCCATCGGGGGAGCAAG | + |
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Preference number: 4 (lower is better) Translates to: RMCTNCRQQQIDLLALLKPDGHR*LHRGSK Trigger: CTTGCTCCCCCGATGGAGCCATCTGTGCCCGTCTGG...CTTTAGTAGGGCAAGCAGATCTATTTGTTGTTGCCTGCAATTTGTACACATCCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000015545.10 ENSMUST00000112280.8 |
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| CDS-3UTR CCA 90 bp | TGTACAAATTGCAGGCAACAACAAATAGATCTGCTTGCCCTACTAAAGACTAATCCAGACGGGCACAGATaGCTCCATCGGGGGAGCAAG | + |
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Preference number: 4 (lower is better) Translates to: CTNCRQQQIDLLALLKTNPDGHR*LHRGSK Trigger: CTTGCTCCCCCGATGGAGCCATCTGTGCCCGTCTGG...ATTAGTCTTTAGTAGGGCAAGCAGATCTATTTGTTGTTGCCTGCAATTTGTACA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000015545.10 ENSMUST00000112280.8 |
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| CDS-3UTR GCA 90 bp | AGGATGTGTACAAATTGCAGGCAACAACAAATAGATCTGCTTGCCCTACTAAAGCCCTCTGGGTTATGTTaGAAAGCAGGACATGGGAAA | + |
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Preference number: 4 (lower is better) Translates to: RMCTNCRQQQIDLLALLKPSGLC*KAGHGK Trigger: TTTCCCATGTCCTGCTTTGCAACATAACCCAGAGGG...CTTTAGTAGGGCAAGCAGATCTATTTGTTGTTGCCTGCAATTTGTACACATCCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015545.10 ENSMUST00000112280.8 |
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| CDS-3UTR GCA 90 bp | AGGATGTGTACAAATTGCAGGCAACAACAAATAGATCTGCTTGCCCTACTAAAGGGAGAATGCCACCATTaGTCTGAAGAGGTATTCTTG | + |
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Preference number: 4 (lower is better) Translates to: RMCTNCRQQQIDLLALLKGECHH*SEEVFL Trigger: CAAGAATACCTCTTCAGAGCAATGGTGGCATTCTCC...CTTTAGTAGGGCAAGCAGATCTATTTGTTGTTGCCTGCAATTTGTACACATCCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015545.10 ENSMUST00000112280.8 |
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| CDS-3UTR GCA 90 bp | AGGATGTGTACAAATTGCAGGCAACAACAAATAGATCTGCTTGCCCTACTAAAGAAGCCATCATTAATGTaGCCTCCCTTCATGTCCAAG | + |
|
Preference number: 4 (lower is better) Translates to: RMCTNCRQQQIDLLALLKKPSLM*PPFMSK Trigger: CTTGGACATGAAGGGAGGGCACATTAATGATGGCTT...CTTTAGTAGGGCAAGCAGATCTATTTGTTGTTGCCTGCAATTTGTACACATCCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015545.10 ENSMUST00000112280.8 |
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| CDS-3UTR CCA 90 bp | TGTACAAATTGCAGGCAACAACAAATAGATCTGCTTGCCCTACTAAAGACTAATGGCATTTTCTGCATCTaGATGGCAGAGTTCAGCGTG | + |
|
Preference number: 4 (lower is better) Translates to: CTNCRQQQIDLLALLKTNGIFCI*MAEFSV Trigger: CACGCTGAACTCTGCCATCCAGATGCAGAAAATGCC...ATTAGTCTTTAGTAGGGCAAGCAGATCTATTTGTTGTTGCCTGCAATTTGTACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015545.10 ENSMUST00000112280.8 |
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| CDS-3UTR CCA 90 bp | AGGATGTGTACAAATTGCAGGCAACAACAAATAGATCTGCTTGCCCTACTAAAGTGGGAACTTTTCTCATaGAGAATGCCACCATTGCTC | + |
|
Preference number: 4 (lower is better) Translates to: RMCTNCRQQQIDLLALLKWELFS*RMPPLL Trigger: GAGCAATGGTGGCATTCTCCATGAGAAAAGTTCCCA...CTTTAGTAGGGCAAGCAGATCTATTTGTTGTTGCCTGCAATTTGTACACATCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015545.10 ENSMUST00000112280.8 |
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| CDS-3UTR CCA 90 bp | AGGATGTGTACAAATTGCAGGCAACAACAAATAGATCTGCTTGCCCTACTAAAGATCTTCCACTCCAGGTaGTCCTTTGTTGTTCCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: RMCTNCRQQQIDLLALLKIFHSR*SFVVPS Trigger: AGAAGGAACAACAAAGGACCACCTGGAGTGGAAGAT...CTTTAGTAGGGCAAGCAGATCTATTTGTTGTTGCCTGCAATTTGTACACATCCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015545.10 ENSMUST00000112280.8 |
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| CDS-3UTR TCA 90 bp | TGTACAAATTGCAGGCAACAACAAATAGATCTGCTTGCCCTACTAAAGACTAATATGCCACCATTGCTCTaGAGAGGTATTCTTGATCCG | + |
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Preference number: 4 (lower is better) Translates to: CTNCRQQQIDLLALLKTNMPPLL*RGILDP Trigger: CGGATCAAGAATACCTCTTCAGAGCAATGGTGGCAT...ATTAGTCTTTAGTAGGGCAAGCAGATCTATTTGTTGTTGCCTGCAATTTGTACA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015545.10 ENSMUST00000112280.8 |
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| CDS-3UTR GCA 90 bp | TGTACAAATTGCAGGCAACAACAAATAGATCTGCTTGCCCTACTAAAGACTAATTTCACACTTGTCTTCTaGATCTTCCACTCCAGGTGG | + |
|
Preference number: 4 (lower is better) Translates to: CTNCRQQQIDLLALLKTNFTLVF*IFHSRW Trigger: CCACCTGGAGTGGAAGATGCAGAAGACAAGTGTGAA...ATTAGTCTTTAGTAGGGCAAGCAGATCTATTTGTTGTTGCCTGCAATTTGTACA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015545.10 ENSMUST00000112280.8 |
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| CDS-3UTR CCA 90 bp | AGGATGTGTACAAATTGCAGGCAACAACAAATAGATCTGCTTGCCCTACTAAAGCTGTTGCTTCTCTGTTaGGAACTTTTCTCATGGAGA | + |
|
Preference number: 4 (lower is better) Translates to: RMCTNCRQQQIDLLALLKLLLLC*ELFSWR Trigger: TCTCCATGAGAAAAGTTCCCAACAGAGAAGCAACAG...CTTTAGTAGGGCAAGCAGATCTATTTGTTGTTGCCTGCAATTTGTACACATCCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015545.10 ENSMUST00000112280.8 |
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| CDS-3UTR TCA 90 bp | TGTACAAATTGCAGGCAACAACAAATAGATCTGCTTGCCCTACTAAAGACTAATCTGAAGAGGTATTCTTaGTCCGTGTCCCAGACATAT | + |
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Preference number: 4 (lower is better) Translates to: CTNCRQQQIDLLALLKTNLKRYS*SVSQTY Trigger: ATATGTCTGGGACACGGATCAAGAATACCTCTTCAG...ATTAGTCTTTAGTAGGGCAAGCAGATCTATTTGTTGTTGCCTGCAATTTGTACA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015545.10 ENSMUST00000112280.8 |
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| CDS-3UTR GCA 90 bp | AGGATGTGTACAAATTGCAGGCAACAACAAATAGATCTGCTTGCCCTACTAAAGCGACTGTACTTCAGCTaGAGGAAGAGTATAATTGTT | + |
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Preference number: 4 (lower is better) Translates to: RMCTNCRQQQIDLLALLKRLYFS*RKSIIV Trigger: AACAATTATACTCTTCCTGCAGCTGAAGTACAGTCG...CTTTAGTAGGGCAAGCAGATCTATTTGTTGTTGCCTGCAATTTGTACACATCCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015545.10 ENSMUST00000112280.8 |
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| CDS-3UTR GCA 90 bp | AGGATGTGTACAAATTGCAGGCAACAACAAATAGATCTGCTTGCCCTACTAAAGATGGGAAATTTCTGTTaGTTCTCTGTTGGGAACTTT | + |
|
Preference number: 4 (lower is better) Translates to: RMCTNCRQQQIDLLALLKMGNFC*FSVGNF Trigger: AAAGTTCCCAACAGAGAAGCAACAGAAATTTCCCAT...CTTTAGTAGGGCAAGCAGATCTATTTGTTGTTGCCTGCAATTTGTACACATCCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015545.10 ENSMUST00000112280.8 |
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| CDS-3UTR CCA 90 bp | TGTACAAATTGCAGGCAACAACAAATAGATCTGCTTGCCCTACTAAAGACTAATCTGTTGCTTCTCTGTTaGGAACTTTTCTCATGGAGA | + |
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Preference number: 4 (lower is better) Translates to: CTNCRQQQIDLLALLKTNLLLLC*ELFSWR Trigger: TCTCCATGAGAAAAGTTCCCAACAGAGAAGCAACAG...ATTAGTCTTTAGTAGGGCAAGCAGATCTATTTGTTGTTGCCTGCAATTTGTACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015545.10 ENSMUST00000112280.8 |
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| CDS-3UTR GCA 90 bp | TGTACAAATTGCAGGCAACAACAAATAGATCTGCTTGCCCTACTAAAGACTAATTTTAAAGGCATTTTCTaGATCTGGATGGCAGAGTTC | + |
|
Preference number: 4 (lower is better) Translates to: CTNCRQQQIDLLALLKTNFKGIF*IWMAEF Trigger: GAACTCTGCCATCCAGATGCAGAAAATGCCTTTAAA...ATTAGTCTTTAGTAGGGCAAGCAGATCTATTTGTTGTTGCCTGCAATTTGTACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000015545.10 ENSMUST00000112280.8 |
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| CDS-3UTR CCA 90 bp | TGTACAAATTGCAGGCAACAACAAATAGATCTGCTTGCCCTACTAAAGACTAATTTGCAAAGCAGGACATaGGAAATTTCTGTTGCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: CTNCRQQQIDLLALLKTNLQSRT*EISVAS Trigger: AGAAGCAACAGAAATTTCCCATGTCCTGCTTTGCAA...ATTAGTCTTTAGTAGGGCAAGCAGATCTATTTGTTGTTGCCTGCAATTTGTACA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015545.10 ENSMUST00000112280.8 |
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| CDS-3UTR GCA 90 bp | TGTACAAATTGCAGGCAACAACAAATAGATCTGCTTGCCCTACTAAAGACTAATATGGGAAATTTCTGTTaGTTCTCTGTTGGGAACTTT | + |
|
Preference number: 4 (lower is better) Translates to: CTNCRQQQIDLLALLKTNMGNFC*FSVGNF Trigger: AAAGTTCCCAACAGAGAAGCAACAGAAATTTCCCAT...ATTAGTCTTTAGTAGGGCAAGCAGATCTATTTGTTGTTGCCTGCAATTTGTACA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015545.10 ENSMUST00000112280.8 |
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| CDS GCA 90 bp | AGAGGGGTGAGGCGCTCATCCTCTGTCAAGAAGCCATCATTAATGTaGCCTCCCTTCATGTCCAAGGGATCACAAGGGATGCCATTTTCT | + |
|
Preference number: 5 (lower is better) Translates to: RGVRRSSSVKKPSLM*PPFMSKGSQGMPFS Trigger: AGAAAATGGCATCCCTTGTGATCCCTTGGACATGAAGGGAGGGCACATTAATGATGGCTTCTTGACAGAGGATGAGCGCCTCACCCCTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000015545.10 ENSMUST00000112280.8 |
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| CDS GCA 90 bp | TGTCTTCTGCATCTTCCACTCCAGGTGGTCCTTTGTTGTTCCTTCTaGGTTGCCGGATTCCAGATAGAACCAGTAGTGCAATTGCAACTG | + |
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Preference number: 5 (lower is better) Translates to: CLLHLPLQVVLCCSF*VAGFQIEPVVQLQL Trigger: CAGTTGCAATTGCACTACTGGTTCTATCTGGAATCCGGCAACGCAGAAGGAACAACAAAGGACCACCTGGAGTGGAAGATGCAGAAGACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015545.10 ENSMUST00000112280.8 |
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| CDS GCA 90 bp | TCTGCATCTTCCACTCCAGGTGGTCCTTTGTTGTTCCTTCTGCGTTaGCGGATTCCAGATAGAACCAGTAGTGCAATTGCAACTGTAACA | + |
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Preference number: 5 (lower is better) Translates to: SASSTPGGPLLFLLR*RIPDRTSSAIATVT Trigger: TGTTACAGTTGCAATTGCACTACTGGTTCTATCTGGAATCCGGCAACGCAGAAGGAACAACAAAGGACCACCTGGAGTGGAAGATGCAGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015545.10 ENSMUST00000112280.8 |
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| CDS GCA 90 bp | GGAAATTTCTGTTGCTTCTCTGTTGGGAACTTTTCTCATGGAGAATaGCACCATTGCTCTGAAGAGGTATTCTTGATCCGTGTCCCAGAC | + |
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Preference number: 5 (lower is better) Translates to: GNFCCFSVGNFSHGE*HHCSEEVFLIRVPD Trigger: GTCTGGGACACGGATCAAGAATACCTCTTCAGAGCAATGGTGGCATTCTCCATGAGAAAAGTTCCCAACAGAGAAGCAACAGAAATTTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015545.10 ENSMUST00000112280.8 |
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| CDS TCA 90 bp | CTTCTCTGTTGGGAACTTTTCTCATGGAGAATGCCACCATTGCTCTaGAGAGGTATTCTTGATCCGTGTCCCAGACATATGCTTTATCTC | + |
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Preference number: 5 (lower is better) Translates to: LLCWELFSWRMPPLL*RGILDPCPRHMLYL Trigger: GAGATAAAGCATATGTCTGGGACACGGATCAAGAATACCTCTTCAGAGCAATGGTGGCATTCTCCATGAGAAAAGTTCCCAACAGAGAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015545.10 ENSMUST00000112280.8 |
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| CDS GCA 90 bp | TGTTGCTTCTCTGTTGGGAACTTTTCTCATGGAGAATGCCACCATTaGTCTGAAGAGGTATTCTTGATCCGTGTCCCAGACATATGCTTT | + |
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Preference number: 5 (lower is better) Translates to: CCFSVGNFSHGECHH*SEEVFLIRVPDICF Trigger: AAAGCATATGTCTGGGACACGGATCAAGAATACCTCTTCAGAGCAATGGTGGCATTCTCCATGAGAAAAGTTCCCAACAGAGAAGCAACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015545.10 ENSMUST00000112280.8 |
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| CDS GCA 90 bp | AGGGATGCCATTTTCTATTGTGATGATGTTTTCACACTTGTCTTCTaGATCTTCCACTCCAGGTGGTCCTTTGTTGTTCCTTCTGCGTTG | + |
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Preference number: 5 (lower is better) Translates to: RDAIFYCDDVFTLVF*IFHSRWSFVVPSAL Trigger: CAACGCAGAAGGAACAACAAAGGACCACCTGGAGTGGAAGATGCAGAAGACAAGTGTGAAAACATCATCACAATAGAAAATGGCATCCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000015545.10 ENSMUST00000112280.8 |
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| CDS-3UTR CAA 90 bp | AGGATGTGTACAAATTGCAGGCAACAACAAATAGATCTGCTTGCCCTACTAAAGACCCTCTGGGTTATGTaGCAAAGCAGGACATGGGAA | + |
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Preference number: 5 (lower is better) Translates to: RMCTNCRQQQIDLLALLKTLWVM*QSRTWE Trigger: TTCCCATGTCCTGCTTTGCAACATAACCCAGAGGGT...CTTTAGTAGGGCAAGCAGATCTATTTGTTGTTGCCTGCAATTTGTACACATCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015545.10 ENSMUST00000112280.8 |
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| CDS-3UTR CAA 90 bp | TGTACAAATTGCAGGCAACAACAAATAGATCTGCTTGCCCTACTAAAGACTAATACTCCAGGTGGTCCTTaGTTGTTCCTTCTGCGTTGC | + |
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Preference number: 5 (lower is better) Translates to: CTNCRQQQIDLLALLKTNTPGGP*LFLLRC Trigger: GCAACGCAGAAGGAACAACAAAGGACCACCTGGAGT...ATTAGTCTTTAGTAGGGCAAGCAGATCTATTTGTTGTTGCCTGCAATTTGTACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015545.10 ENSMUST00000112280.8 |
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| CDS GCA 90 bp | CACCATTGCTCTGAAGAGGTATTCTTGATCCGTGTCCCAGACATATaGTTTATCTCCAAGAGCTGCTCTGATGCTAAGTCTTACTTTAAA | + |
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Preference number: 5 (lower is better) Translates to: HHCSEEVFLIRVPDI*FISKSCSDAKSYFK Trigger: TTTAAAGTAAGACTTAGCATCAGAGCAGCTCTTGGAGATAAAGCATATGTCTGGGACACGGATCAAGAATACCTCTTCAGAGCAATGGTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015545.10 ENSMUST00000112280.8 |
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| CDS-3UTR CAA 90 bp | AGGATGTGTACAAATTGCAGGCAACAACAAATAGATCTGCTTGCCCTACTAAAGTCTGAAGAGGTATTCTaGATCCGTGTCCCAGACATA | + |
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Preference number: 5 (lower is better) Translates to: RMCTNCRQQQIDLLALLKSEEVF*IRVPDI Trigger: TATGTCTGGGACACGGATCAAGAATACCTCTTCAGA...CTTTAGTAGGGCAAGCAGATCTATTTGTTGTTGCCTGCAATTTGTACACATCCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015545.10 ENSMUST00000112280.8 |
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| CDS-3UTR CAA 90 bp | TGTACAAATTGCAGGCAACAACAAATAGATCTGCTTGCCCTACTAAAGACTAATACCCTCTGGGTTATGTaGCAAAGCAGGACATGGGAA | + |
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Preference number: 5 (lower is better) Translates to: CTNCRQQQIDLLALLKTNTLWVM*QSRTWE Trigger: TTCCCATGTCCTGCTTTGCAACATAACCCAGAGGGT...ATTAGTCTTTAGTAGGGCAAGCAGATCTATTTGTTGTTGCCTGCAATTTGTACA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015545.10 ENSMUST00000112280.8 |
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| CDS-3UTR CAA 90 bp | TGTACAAATTGCAGGCAACAACAAATAGATCTGCTTGCCCTACTAAAGACTAATTCTGAAGAGGTATTCTaGATCCGTGTCCCAGACATA | + |
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Preference number: 5 (lower is better) Translates to: CTNCRQQQIDLLALLKTNSEEVF*IRVPDI Trigger: TATGTCTGGGACACGGATCAAGAATACCTCTTCAGA...ATTAGTCTTTAGTAGGGCAAGCAGATCTATTTGTTGTTGCCTGCAATTTGTACA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015545.10 ENSMUST00000112280.8 |
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| CDS-3UTR CAA 90 bp | TGTACAAATTGCAGGCAACAACAAATAGATCTGCTTGCCCTACTAAAGACTAATCATGGGAAATTTCTGTaGCTTCTCTGTTGGGAACTT | + |
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Preference number: 5 (lower is better) Translates to: CTNCRQQQIDLLALLKTNHGKFL*LLCWEL Trigger: AAGTTCCCAACAGAGAAGCAACAGAAATTTCCCATG...ATTAGTCTTTAGTAGGGCAAGCAGATCTATTTGTTGTTGCCTGCAATTTGTACA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015545.10 ENSMUST00000112280.8 |
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| CDS-3UTR CAA 90 bp | TGTACAAATTGCAGGCAACAACAAATAGATCTGCTTGCCCTACTAAAGACTAATATGATGTTTTCACACTaGTCTTCTGCATCTTCCACT | + |
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Preference number: 5 (lower is better) Translates to: CTNCRQQQIDLLALLKTNMMFSH*SSASST Trigger: AGTGGAAGATGCAGAAGACAAGTGTGAAAACATCAT...ATTAGTCTTTAGTAGGGCAAGCAGATCTATTTGTTGTTGCCTGCAATTTGTACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015545.10 ENSMUST00000112280.8 |
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| CDS GCA 72 bp | AGGCGCTCATCCTCTGTCAAGAAGCCATCATTAATGTaGCCTCCCTTCATGTCCAAGGGATCACAAGGGATG | + |
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Preference number: 6 (lower is better) Translates to: RRSSSVKKPSLM*PPFMSKGSQGM Trigger: CATCCCTTGTGATCCCTTGGACATGAAGGGAGGGCACATTAATGATGGCTTCTTGACAGAGGATGAGCGCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015545.10 ENSMUST00000112280.8 |
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| CDS GCA 72 bp | TCCACTCCAGGTGGTCCTTTGTTGTTCCTTCTGCGTTaGCGGATTCCAGATAGAACCAGTAGTGCAATTGCA | + |
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Preference number: 6 (lower is better) Translates to: STPGGPLLFLLR*RIPDRTSSAIA Trigger: TGCAATTGCACTACTGGTTCTATCTGGAATCCGGCAACGCAGAAGGAACAACAAAGGACCACCTGGAGTGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015545.10 ENSMUST00000112280.8 |
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| CDS GCA 72 bp | CATCTTCCACTCCAGGTGGTCCTTTGTTGTTCCTTCTaGGTTGCCGGATTCCAGATAGAACCAGTAGTGCAA | + |
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Preference number: 6 (lower is better) Translates to: HLPLQVVLCCSF*VAGFQIEPVVQ Trigger: TTGCACTACTGGTTCTATCTGGAATCCGGCAACGCAGAAGGAACAACAAAGGACCACCTGGAGTGGAAGATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015545.10 ENSMUST00000112280.8 |
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| CDS TCA 72 bp | AAGGCATTTTCTGCATCTGGATGGCAGAGTTCAGCGTaGATAGTAGTCACCAGGAAAAAGAGCGCCCACAAC | + |
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Preference number: 6 (lower is better) Translates to: KAFSASGWQSSA*IVVTRKKSAHN Trigger: GTTGTGGGCGCTCTTTTTCCTGGTGACTACTATTCACGCTGAACTCTGCCATCCAGATGCAGAAAATGCCTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000015545.10 ENSMUST00000112280.8 |
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| CDS CAA 90 bp | TTTTCACACTTGTCTTCTGCATCTTCCACTCCAGGTGGTCCTTTGTaGTTCCTTCTGCGTTGCCGGATTCCAGATAGAACCAGTAGTGCA | + |
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Preference number: 6 (lower is better) Translates to: FSHLSSASSTPGGPL*FLLRCRIPDRTSSA Trigger: TGCACTACTGGTTCTATCTGGAATCCGGCAACGCAGAAGGAACAACAAAGGACCACCTGGAGTGGAAGATGCAGAAGACAAGTGTGAAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015545.10 ENSMUST00000112280.8 |
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| CDS CAA 90 bp | ATGTTTTCACACTTGTCTTCTGCATCTTCCACTCCAGGTGGTCCTTaGTTGTTCCTTCTGCGTTGCCGGATTCCAGATAGAACCAGTAGT | + |
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Preference number: 6 (lower is better) Translates to: MFSHLSSASSTPGGP*LFLLRCRIPDRTSS Trigger: ACTACTGGTTCTATCTGGAATCCGGCAACGCAGAAGGAACAACAAAGGACCACCTGGAGTGGAAGATGCAGAAGACAAGTGTGAAAACAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015545.10 ENSMUST00000112280.8 |
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| CDS GCA 72 bp | TCTGTTGGGAACTTTTCTCATGGAGAATGCCACCATTaGTCTGAAGAGGTATTCTTGATCCGTGTCCCAGAC | + |
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Preference number: 6 (lower is better) Translates to: SVGNFSHGECHH*SEEVFLIRVPD Trigger: GTCTGGGACACGGATCAAGAATACCTCTTCAGAGCAATGGTGGCATTCTCCATGAGAAAAGTTCCCAACAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015545.10 ENSMUST00000112280.8 |
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| CDS GCA 72 bp | TCCTTTGTTGTTCCTTATGGCCGACTGTACTTCAGCTaGAGGAAGAGTATAATTGTTGGAAGGGTCCGTGAC | + |
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Preference number: 6 (lower is better) Translates to: SFVVPYGRLYFS*RKSIIVGRVRD Trigger: GTCACGGACCCTTCCAACAATTATACTCTTCCTGCAGCTGAAGTACAGTCGGCCATAAGGAACAACAAAGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000141818.2 |
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| CDS CCA 72 bp | TATCACACCGAATACAATAATCCAGACGGGCACAGATaGCTCCATCGGGGGAGCAAGAGTAGAAGGAATTTT | + |
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Preference number: 6 (lower is better) Translates to: YHTEYNNPDGHR*LHRGSKSRRNF Trigger: AAAATTCCTTCTACTCTTGCTCCCCCGATGGAGCCATCTGTGCCCGTCTGGATTATTGTATTCGGTGTGATA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000015545.10 ENSMUST00000112280.8 |
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| CDS TCA 72 bp | TGGGAACTTTTCTCATGGAGAATGCCACCATTGCTCTaGAGAGGTATTCTTGATCCGTGTCCCAGACATATG | + |
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Preference number: 6 (lower is better) Translates to: WELFSWRMPPLL*RGILDPCPRHM Trigger: CATATGTCTGGGACACGGATCAAGAATACCTCTTCAGAGCAATGGTGGCATTCTCCATGAGAAAAGTTCCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015545.10 ENSMUST00000112280.8 |
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| CDS GCA 72 bp | GTTCCTATTCTTTCTTATGGCCGACTGTACTTCAGCTaGAGGAAGAGTATAATTGTTGGAAGGGTCCGTGAC | + |
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Preference number: 6 (lower is better) Translates to: VPILSYGRLYFS*RKSIIVGRVRD Trigger: GTCACGGACCCTTCCAACAATTATACTCTTCCTGCAGCTGAAGTACAGTCGGCCATAAGAAAGAATAGGAAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015545.10 ENSMUST00000112280.8 |
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| CDS CAA 72 bp | CATGGAGAATGCCACCATTGCTCTGAAGAGGTATTCTaGATCCGTGTCCCAGACATATGCTTTATCTCCAAG | + |
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Preference number: 6 (lower is better) Translates to: HGECHHCSEEVF*IRVPDICFISK Trigger: CTTGGAGATAAAGCATATGTCTGGGACACGGATCAAGAATACCTCTTCAGAGCAATGGTGGCATTCTCCATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015545.10 ENSMUST00000112280.8 |
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| CDS TCA 72 bp | ATGGAGAATGCCACCATTGCTCTGAAGAGGTATTCTTaGTCCGTGTCCCAGACATATGCTTTATCTCCAAGA | + |
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Preference number: 6 (lower is better) Translates to: MENATIALKRYS*SVSQTYALSPR Trigger: TCTTGGAGATAAAGCATATGTCTGGGACACGGATCAAGAATACCTCTTCAGAGCAATGGTGGCATTCTCCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015545.10 ENSMUST00000112280.8 |
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| CDS GCA 72 bp | TCTGAAGAGGTATTCTTGATCCGTGTCCCAGACATATaGTTTATCTCCAAGAGCTGCTCTGATGCTAAGTCT | + |
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Preference number: 6 (lower is better) Translates to: SEEVFLIRVPDI*FISKSCSDAKS Trigger: AGACTTAGCATCAGAGCAGCTCTTGGAGATAAAGCATATGTCTGGGACACGGATCAAGAATACCTCTTCAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015545.10 ENSMUST00000112280.8 |
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