Pregenerated sensors for CLTA (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028478

Ensembl transcript IDs: ENSMUST00000107845.4, ENSMUST00000107846.10, ENSMUST00000107847.10, ENSMUST00000107849.10, ENSMUST00000107851.10, ENSMUST00000170241.8

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 72 bp	ACAGCATCCGGACCTCCCGGCGGCTCGCCGTGTGGCTaGGGCCCGGGGGCGCCGCCGTCCAGGATGGCGAAG	+
Preference number: 6 (lower is better) Translates to: TASGPPGGSPCG*GPGAPPSRMAK Trigger: CTTCGCCATCCTGGACGGCGGCGCCCCCGGGCCGCAGCCACACGGCGAGCCGCCGGGAGGTCCGGATGCTGT 78% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000107846.10 ENSMUST00000107847.10 ENSMUST00000107849.10 ENSMUST00000107851.10 ENSMUST00000170241.8
CDS GCA 72 bp	CGCCGTCCAGGATGGCGAAGGCCTCATCGTTCTCGATaGCCGCAATCTCACTCTCTTGCTGCGCCAAGAAGG	+
Preference number: 6 (lower is better) Translates to: RRPGWRRPHRSR*PQSHSLAAPRR Trigger: CCTTCTTGGCGCAGCAAGAGAGTGAGATTGCGGGCATCGAGAACGATGAGGCCTTCGCCATCCTGGACGGCG 61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000107845.4 ENSMUST00000107846.10 ENSMUST00000107847.10 ENSMUST00000107849.10 ENSMUST00000107851.10 ENSMUST00000170241.8
CDS CAA 72 bp	TTCTGCTGCCACATAACCAATCAGGTCAGCGAAGGGTaGTTTGTAGAAAGCTTCGTCTGCCACCCTGTTGTT	+
Preference number: 6 (lower is better) Translates to: FCCHITNQVSEG*FVESFVCHPVV Trigger: AACAACAGGGTGGCAGACGAAGCTTTCTACAAACAACCCTTCGCTGACCTGATTGGTTATGTGGCAGCAGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107849.10
CDS CAA 90 bp	AAAGGCTTCTTCTGCTGCCACATAACCAATCAGGTCAGCGAAGGGTaGTTTGTAGAAAGCTTCGTCTGCCACCCTGTTGTTTGCCTTTGT	+
Preference number: 6 (lower is better) Translates to: KGFFCCHITNQVSEG*FVESFVCHPVVCLC Trigger: ACAAAGGCAAACAACAGGGTGGCAGACGAAGCTTTCTACAAACAACCCTTCGCTGACCTGATTGGTTATGTGGCAGCAGAAGAAGCCTTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107849.10
CDS CAA 90 bp	AGGATGGTTTATGTTTGTGACATAACCAATCAGGTCAGCGAAGGGTaGTTTGTAGAAAGCTTCGTCTGCCACCCTGTTGTTTGCCTTTGT	+
Preference number: 6 (lower is better) Translates to: RMVYVCDITNQVSEG*FVESFVCHPVVCLC Trigger: ACAAAGGCAAACAACAGGGTGGCAGACGAAGCTTTCTACAAACAACCCTTCGCTGACCTGATTGGTTATGTCACAAACATAAACCATCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107851.10
CDS CAA 72 bp	TATGTTTGTGACATAACCAATCAGGTCAGCGAAGGGTaGTTTGTAGAAAGCTTCGTCTGCCACCCTGTTGTT	+
Preference number: 6 (lower is better) Translates to: YVCDITNQVSEG*FVESFVCHPVV Trigger: AACAACAGGGTGGCAGACGAAGCTTTCTACAAACAACCCTTCGCTGACCTGATTGGTTATGTCACAAACATA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107851.10

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