RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CLSTN3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000008153

Ensembl transcript IDs: ENSMUST00000008297.5, ENSMUST00000112523.8, ENSMUST00000150774.3, ENSMUST00000238807.2, ENSMUST00000239139.2

Found 304 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGCAGGCCTCTCTCTCTTGGCAGGGTTGGCGCCTCAATAGCGGTGTaGGGGGCTCTCAATGATGCGTCTCTCATCACTGCTGGGGGAGTC +
Preference number: 1 (lower is better)
Translates to: GRPLSLGRVGASIAV*GALNDASLITAGGV
Trigger: GACTCCCCCAGCAGTGATGAGAGACGCATCATTGAGAGCCCCCCACACCGCTATTGAGGCGCCAACCCTGCCAAGAGAGAGAGGCCTGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000239139.2
3UTR GCA 90 bp GGGGCTCTCAATGATGCGTCTCTCATCACTGCTGGGGGAGTCGGCTaGTTCCGAGTCACTGCTGTCCTCTTCCTCTTGCTGGCCACCAGC +
Preference number: 1 (lower is better)
Translates to: GALNDASLITAGGVG*FRVTAVLFLLLATS
Trigger: GCTGGTGGCCAGCAAGAGGAAGAGGACAGCAGTGACTCGGAAGCAGCCGACTCCCCCAGCAGTGATGAGAGACGCATCATTGAGAGCCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000239139.2
3UTR TCA 90 bp TCAGTGGAAGCCCCTGAAGGTCCGCCAGTTCCTGAGACGCGGCGATaGAGGGAGTGGATCCGAACGAGGCCGAGGATAACCATAAGCACC +
Preference number: 1 (lower is better)
Translates to: SVEAPEGPPVPETRR*REWIRTRPRITIST
Trigger: GGTGCTTATGGTTATCCTCGGCCTCGTTCGGATCCACTCCCTTCATCGCCGCGTCTCAGGAACTGGCGGACCTTCAGGGGCTTCCACTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000239139.2
3UTR GCA 90 bp CGAGTCACTGCTGTCCTCTTCCTCTTGCTGGCCACCAGCCACCCCTaGCACACAGGTCTGCTGGTTCTGGTAGGACTCCATAGGATTGAC +
Preference number: 1 (lower is better)
Translates to: RVTAVLFLLLATSHP*HTGLLVLVGLHRID
Trigger: GTCAATCCTATGGAGTCCTACCAGAACCAGCAGACCTGTGTGGCAGGGGTGGCTGGTGGCCAGCAAGAGGAAGAGGACAGCAGTGACTCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000239139.2
3UTR CCA 90 bp GGCAGGGGCAGGCTGAAGGAGGAGGGCAACTCCTGTGGGGCCTCCTaGGGTTCTGAGATTGAAGGACTGCTCCAAATGAAGAGCTCTTTC +
Preference number: 1 (lower is better)
Translates to: GRGRLKEEGNSCGAS*GSEIEGLLQMKSSF
Trigger: GAAAGAGCTCTTCATTTGGAGCAGTCCTTCAATCTCAGAACCCCAGGAGGCCCCACAGGAGTTGCCCTCCTCCTTCAGCCTGCCCCTGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
ENSMUST00000238807.2
ENSMUST00000239139.2
3UTR CCA 90 bp TCAACCAAGGCTGTTGACATCCCCCTCCCTAATACAGTGCATGGCTaGCACAGTATGCTGCCACAGGTAGGCTACAGGGCAGCCAAAGCC +
Preference number: 1 (lower is better)
Translates to: STKAVDIPLPNTVHG*HSMLPQVGYRAAKA
Trigger: GGCTTTGGCTGCCCTGTAGCCTACCTGTGGCAGCATACTGTGCCAGCCATGCACTGTATTAGGGAGGGGGATGTCAACAGCCTTGGTTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
ENSMUST00000239139.2
3UTR TCA 90 bp TCCCAGGACATGACAATGCCACGCACACGCACACATACAAGGCTGTaGGCTGCACACAGAAACACAGGAGCTGCGCTCACGACAACATTG +
Preference number: 1 (lower is better)
Translates to: SQDMTMPRTRTHTRL*AAHRNTGAALTTTL
Trigger: CAATGTTGTCGTGAGCGCAGCTCCTGTGTTTCTGTGTGCAGCTCACAGCCTTGTATGTGTGCGTGTGCGTGGCATTGTCATGTCCTGGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
ENSMUST00000239139.2
3UTR CCA 90 bp AGAGCCAACCCTACCCTGTCACCTCAACCTGCTCAGAGGCCTAAATaGCCCCTAAGATCAGAAAGCCCACAGTCACACAGAATCAGCCAG +
Preference number: 1 (lower is better)
Translates to: RANPTLSPQPAQRPK*PLRSESPQSHRISQ
Trigger: CTGGCTGATTCTGTGTGACTGTGGGCTTTCTGATCTTAGGGGCCATTTAGGCCTCTGAGCAGGTTGAGGTGACAGGGTAGGGTTGGCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000239139.2
3UTR GCA 90 bp AAGCAGGCCATGGAGAAAGGAATAGAGACAGTAAGACCTTGGTACTaGTCAGGCAGGAGAGGAAAAGAGGACAAAAGAGGGAGGAGGCTG +
Preference number: 1 (lower is better)
Translates to: KQAMEKGIETVRPWY*SGRRGKEDKRGRRL
Trigger: CAGCCTCCTCCCTCTTTTGTCCTCTTTTCCTCTCCTGCCTGAGCAGTACCAAGGTCTTACTGTCTCTATTCCTTTCTCCATGGCCTGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
ENSMUST00000239139.2
3UTR-3UTR TCA 90 bp AGCCCAAGGCAGGGGCAGGCTGAAGGAGGAGGGCAACTCCTGTGGGGCCTCCTGCCTGAGACGCGGCGATaGAGGGAGTGGATCCGAACG +
Preference number: 2 (lower is better)
Translates to: SPRQGQAEGGGQLLWGLLPETRR*REWIRT
Trigger: CGTTCGGATCCACTCCCTTCATCGCCGCGTCTCAGG...CAGGAGGCCCCACAGGAGTTGCCCTCCTCCTTCAGCCTGCCCCTGCCTTGGGCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000239139.2
3UTR-3UTR CCA 90 bp CACCCACCCCCTACCCTCATCCCAGGACATGACAATGCCACGCACACGCACACACCCAGGGCAGCCAGCTaGGGCAGACACCTCAGGAGT +
Preference number: 2 (lower is better)
Translates to: HPPPTLIPGHDNATHTHTPRAAS*GRHLRS
Trigger: ACTCCTGAGGTGTCTGCCCCAGCTGGCTGCCCTGGG...TGTGTGCGTGTGCGTGGCATTGTCATGTCCTGGGATGAGGGTAGGGGGTGGGTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
ENSMUST00000239139.2
3UTR-3UTR CCA 90 bp AGGAGGGCAACTCCTGTGGGGCCTCCTGGGGTTCTGAGATTGAAGGACTGCTCCCCCAGGGCAGCCAGCTaGGGCAGACACCTCAGGAGT +
Preference number: 2 (lower is better)
Translates to: RRATPVGPPGVLRLKDCSPRAAS*GRHLRS
Trigger: ACTCCTGAGGTGTCTGCCCCAGCTGGCTGCCCTGGG...GGAGCAGTCCTTCAATCTCAGAACCCCAGGAGGCCCCACAGGAGTTGCCCTCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
ENSMUST00000239139.2
3UTR-3UTR GCA 90 bp CACCCACCCCCTACCCTCATCCCAGGACATGACAATGCCACGCACACGCACACACTGTCCTCTTCCTCTTaGTGGCCACCAGCCACCCCT +
Preference number: 2 (lower is better)
Translates to: HPPPTLIPGHDNATHTHTLSSSS*WPPATP
Trigger: AGGGGTGGCTGGTGGCCAGCAAGAGGAAGAGGACAG...TGTGTGCGTGTGCGTGGCATTGTCATGTCCTGGGATGAGGGTAGGGGGTGGGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000239139.2
3UTR-3UTR CCA 90 bp GGAGGGGGAGGGGCAACAGAAGGAAAGCCCTCACGGACAGAACAGAGTAGAGAACCCAGGGCAGCCAGCTaGGGCAGACACCTCAGGAGT +
Preference number: 2 (lower is better)
Translates to: GGGGATEGKPSRTEQSREPRAAS*GRHLRS
Trigger: ACTCCTGAGGTGTCTGCCCCAGCTGGCTGCCCTGGG...TTCTCTACTCTGTTCTGTCCGTGAGGGCTTTCCTTCTGTTGCCCCTCCCCCTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
ENSMUST00000239139.2
3UTR-3UTR GCA 90 bp CAGGTAGGCTACAGGGCAGCCAAAGCCATCCAGCCACTCTCCCAGGGCAGCCAGCCCTCCCTAATACAGTaGATGGCTGGCACAGTATGC +
Preference number: 2 (lower is better)
Translates to: QVGYRAAKAIQPLSQGSQPSLIQ*MAGTVC
Trigger: GCATACTGTGCCAGCCATGCACTGTATTAGGGAGGG...CTGGCTGCCCTGGGAGAGTGGCTGGATGGCTTTGGCTGCCCTGTAGCCTACCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
ENSMUST00000239139.2
3UTR-3UTR GCA 90 bp GGGGGAGGGGCAACAGAAGGAAAGCCCTCACGGACAGAACAGAGTAGAGAAGGAGCCACCAGCCACCCCTaGCACACAGGTCTGCTGGTT +
Preference number: 2 (lower is better)
Translates to: GGGATEGKPSRTEQSREGATSHP*HTGLLV
Trigger: AACCAGCAGACCTGTGTGGCAGGGGTGGCTGGTGGC...TCCTTCTCTACTCTGTTCTGTCCGTGAGGGCTTTCCTTCTGTTGCCCCTCCCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000239139.2
3UTR-3UTR GCA 90 bp CCACCCCCTACCCTCATCCCAGGACATGACAATGCCACGCACACGCACACATACCTGCTTCCGAGTCACTaGTGTCCTCTTCCTCTTGCT +
Preference number: 2 (lower is better)
Translates to: PPPTLIPGHDNATHTHTYLLPSH*CPLPLA
Trigger: AGCAAGAGGAAGAGGACAGCAGTGACTCGGAAGCAG...GTATGTGTGCGTGTGCGTGGCATTGTCATGTCCTGGGATGAGGGTAGGGGGTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000239139.2
3UTR-3UTR TCA 90 bp CCCCCTACCCTCATCCCAGGACATGACAATGCCACGCACACGCACACATACAAGCAGGGATCCCCAGAGTaGAATGGAAATAGAGGCGAG +
Preference number: 2 (lower is better)
Translates to: PPTLIPGHDNATHTHTYKQGSPE*NGNRGE
Trigger: CTCGCCTCTATTTCCATTTCACTCTGGGGATCCCTG...CTTGTATGTGTGCGTGTGCGTGGCATTGTCATGTCCTGGGATGAGGGTAGGGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
ENSMUST00000239139.2
3UTR-3UTR TCA 90 bp CACCCACCCCCTACCCTCATCCCAGGACATGACAATGCCACGCACACGCACACAACACATACAAGGCTGTaGGCTGCACACAGAAACACA +
Preference number: 2 (lower is better)
Translates to: HPPPTLIPGHDNATHTHTTHTRL*AAHRNT
Trigger: TGTGTTTCTGTGTGCAGCTCACAGCCTTGTATGTGT...TGTGTGCGTGTGCGTGGCATTGTCATGTCCTGGGATGAGGGTAGGGGGTGGGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
ENSMUST00000239139.2
3UTR-3UTR CCA 90 bp AATTGCATTCCCACCTCAACCAAGGCTGTTGACATCCCCCTCCCTAATACAGTGTCCTCTTCCTCTTGCTaGCCACCAGCCACCCCTGCC +
Preference number: 2 (lower is better)
Translates to: NCIPTSTKAVDIPLPNTVSSSSC*PPATPA
Trigger: GGCAGGGGTGGCTGGTGGCCAGCAAGAGGAAGAGGA...CACTGTATTAGGGAGGGGGATGTCAACAGCCTTGGTTGAGGTGGGAATGCAATT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000239139.2
3UTR-3UTR TCA 90 bp AAGGCTGTGAGCTGCACACAGAAACACAGGAGCTGCGCTCACGACAACATTGAACCTCATCCCAGGACATaGCAATGCCACGCACACGCA +
Preference number: 2 (lower is better)
Translates to: KAVSCTQKHRSCAHDNIEPHPRT*QCHAHA
Trigger: TGCGTGTGCGTGGCATTGTCATGTCCTGGGATGAGG...TTCAATGTTGTCGTGAGCGCAGCTCCTGTGTTTCTGTGTGCAGCTCACAGCCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
ENSMUST00000239139.2
3UTR-3UTR CCA 90 bp CATGGAGAAAGGAATAGAGACAGTAAGACCTTGGTACTGCTCAGGCAGGAGAGGGTCTCTCATCACTGCTaGGGGAGTCGGCTGCTTCCG +
Preference number: 2 (lower is better)
Translates to: HGERNRDSKTLVLLRQERVSHHC*GSRLLP
Trigger: CGGAAGCAGCCGACTCCCCCAGCAGTGATGAGAGAC...CCTCTCCTGCCTGAGCAGTACCAAGGTCTTACTGTCTCTATTCCTTTCTCCATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000239139.2
3UTR-3UTR GCA 90 bp AAGGCTGTGAGCTGCACACAGAAACACAGGAGCTGCGCTCACGACAACATTGAATACAAGGCTGTGAGCTaGACACAGAAACACAGGAGC +
Preference number: 2 (lower is better)
Translates to: KAVSCTQKHRSCAHDNIEYKAVS*TQKHRS
Trigger: GCTCCTGTGTTTCTGTGTGCAGCTCACAGCCTTGTA...TTCAATGTTGTCGTGAGCGCAGCTCCTGTGTTTCTGTGTGCAGCTCACAGCCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
ENSMUST00000239139.2
3UTR CCA 72 bp CCAAAGCCATCCAGCCACTCTCCCAGGGCAGCCAGCTaGGGCAGACACCTCAGGAGTACACCAGGGGAAGGG +
Preference number: 3 (lower is better)
Translates to: PKPSSHSPRAAS*GRHLRSTPGEG
Trigger: CCCTTCCCCTGGTGTACTCCTGAGGTGTCTGCCCCAGCTGGCTGCCCTGGGAGAGTGGCTGGATGGCTTTGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
ENSMUST00000239139.2
3UTR TCA 72 bp GCCCCTGAAGGTCCGCCAGTTCCTGAGACGCGGCGATaGAGGGAGTGGATCCGAACGAGGCCGAGGATAACC +
Preference number: 3 (lower is better)
Translates to: APEGPPVPETRR*REWIRTRPRIT
Trigger: GGTTATCCTCGGCCTCGTTCGGATCCACTCCCTTCATCGCCGCGTCTCAGGAACTGGCGGACCTTCAGGGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000239139.2
3UTR GCA 72 bp CATCACTGCTGGGGGAGTCGGCTGCTTCCGAGTCACTaGTGTCCTCTTCCTCTTGCTGGCCACCAGCCACCC +
Preference number: 3 (lower is better)
Translates to: HHCWGSRLLPSH*CPLPLAGHQPP
Trigger: GGGTGGCTGGTGGCCAGCAAGAGGAAGAGGACAGCAGTGACTCGGAAGCAGCCGACTCCCCCAGCAGTGATG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000239139.2
3UTR CCA 72 bp CTCTCTCTTGGCAGGGTTGGCGCCTCAATAGCGGTGTaGGGGGCTCTCAATGATGCGTCTCTCATCACTGCT +
Preference number: 3 (lower is better)
Translates to: LSLGRVGASIAV*GALNDASLITA
Trigger: AGCAGTGATGAGAGACGCATCATTGAGAGCCCCCCACACCGCTATTGAGGCGCCAACCCTGCCAAGAGAGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000239139.2
3UTR GCA 72 bp AATGATGCGTCTCTCATCACTGCTGGGGGAGTCGGCTaGTTCCGAGTCACTGCTGTCCTCTTCCTCTTGCTG +
Preference number: 3 (lower is better)
Translates to: NDASLITAGGVG*FRVTAVLFLLL
Trigger: CAGCAAGAGGAAGAGGACAGCAGTGACTCGGAAGCAGCCGACTCCCCCAGCAGTGATGAGAGACGCATCATT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000239139.2
3UTR CCA 72 bp AGGCTGAAGGAGGAGGGCAACTCCTGTGGGGCCTCCTaGGGTTCTGAGATTGAAGGACTGCTCCAAATGAAG +
Preference number: 3 (lower is better)
Translates to: RLKEEGNSCGAS*GSEIEGLLQMK
Trigger: CTTCATTTGGAGCAGTCCTTCAATCTCAGAACCCCAGGAGGCCCCACAGGAGTTGCCCTCCTCCTTCAGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
ENSMUST00000238807.2
ENSMUST00000239139.2
3UTR CCA 72 bp GCTGTTGACATCCCCCTCCCTAATACAGTGCATGGCTaGCACAGTATGCTGCCACAGGTAGGCTACAGGGCA +
Preference number: 3 (lower is better)
Translates to: AVDIPLPNTVHG*HSMLPQVGYRA
Trigger: TGCCCTGTAGCCTACCTGTGGCAGCATACTGTGCCAGCCATGCACTGTATTAGGGAGGGGGATGTCAACAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
ENSMUST00000239139.2
3UTR TCA 72 bp CAGTGTGAGTCCTCCGCCCCCATCTTACATTCCCAGTaGCAACCTAGGAATTTACACAGCCAGAGCCAACCC +
Preference number: 3 (lower is better)
Translates to: QCESSAPILHSQ*QPRNLHSQSQP
Trigger: GGGTTGGCTCTGGCTGTGTAAATTCCTAGGTTGTCACTGGGAATGTAAGATGGGGGCGGAGGACTCACACTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000239139.2
CDS-3UTR GCA 90 bp AGCCCAAGGCAGGGGCAGGCTGAAGGAGGAGGGCAACTCCTGTGGGGCCTCCTGCCCTACTTCCACCGCTaGACTCCGGGGCCTCCCACC +
Preference number: 4 (lower is better)
Translates to: SPRQGQAEGGGQLLWGLLPYFHR*TPGPPT
Trigger: GGTGGGAGGCCCCGGAGTGCAGCGGTGGAAGTAGGG...CAGGAGGCCCCACAGGAGTTGCCCTCCTCCTTCAGCCTGCCCCTGCCTTGGGCT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000238807.2
ENSMUST00000239139.2
CDS-3UTR TCA 90 bp AGCCCAAGGCAGGGGCAGGCTGAAGGAGGAGGGCAACTCCTGTGGGGCCTCCTGAGCAGGCCCCAATCATaGGTGCAGGTTCCCTCCTGG +
Preference number: 4 (lower is better)
Translates to: SPRQGQAEGGGQLLWGLLSRPQS*VQVPSW
Trigger: CCAGGAGGGAACCTGCACTCATGATTGGGGCCTGCT...CAGGAGGCCCCACAGGAGTTGCCCTCCTCCTTCAGCCTGCCCCTGCCTTGGGCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR TCA 90 bp AGCCCAAGGCAGGGGCAGGCTGAAGGAGGAGGGCAACTCCTGTGGGGCCTCCTGGCTGGGCGGGCAAAATaGGCTGTGCCACTCAGAAGG +
Preference number: 4 (lower is better)
Translates to: SPRQGQAEGGGQLLWGLLAGRAK*AVPLRR
Trigger: CCTTCTGAGTGGCACAGCTCATTTTGCCCGCCCAGC...CAGGAGGCCCCACAGGAGTTGCCCTCCTCCTTCAGCCTGCCCCTGCCTTGGGCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR GCA 90 bp CTGCCACAGGTAGGCTACAGGGCAGCCAAAGCCATCCAGCCACTCTCCCAGGGCTCGCTGAAGCCATCCTaGGGCCCAGAGCCCAGCCCT +
Preference number: 4 (lower is better)
Translates to: LPQVGYRAAKAIQPLSQGSLKPS*GPEPSP
Trigger: AGGGCTGGGCTCTGGGCCGCAGGATGGCTTCAGCGA...GCCCTGGGAGAGTGGCTGGATGGCTTTGGCTGCCCTGTAGCCTACCTGTGGCAG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR GCA 90 bp AGCCCAAGGCAGGGGCAGGCTGAAGGAGGAGGGCAACTCCTGTGGGGCCTCCTGCTGTCCTCTTCCTCTTaGTGGCCACCAGCCACCCCT +
Preference number: 4 (lower is better)
Translates to: SPRQGQAEGGGQLLWGLLLSSSS*WPPATP
Trigger: AGGGGTGGCTGGTGGCCAGCAAGAGGAAGAGGACAG...CAGGAGGCCCCACAGGAGTTGCCCTCCTCCTTCAGCCTGCCCCTGCCTTGGGCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
ENSMUST00000238807.2
CDS-3UTR CCA 90 bp CTCTCCCAGGGCAGCCAGCTGGGGCAGACACCTCAGGAGTACACCAGGGGAAGGAGAGCCCAGCCCTGCTaGACCACCCAGGGGAACTTG +
Preference number: 4 (lower is better)
Translates to: LSQGSQLGQTPQEYTRGRRAQPC*TTQGNL
Trigger: CAAGTTCCCCTGGGTGGTCCAGCAGGGCTGGGCTCT...CCTTCCCCTGGTGTACTCCTGAGGTGTCTGCCCCAGCTGGCTGCCCTGGGAGAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CCA 90 bp AGCCCAAGGCAGGGGCAGGCTGAAGGAGGAGGGCAACTCCTGTGGGGCCTCCTGGAGTGGGCACACAGCTaGACAAACGTCGCCATGCCC +
Preference number: 4 (lower is better)
Translates to: SPRQGQAEGGGQLLWGLLEWAHS*TNVAMP
Trigger: GGGCATGGCGACGTTTGTCCAGCTGTGTGCCCACTC...CAGGAGGCCCCACAGGAGTTGCCCTCCTCCTTCAGCCTGCCCCTGCCTTGGGCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238807.2
CDS-3UTR CCA 90 bp AGCCCAAGGCAGGGGCAGGCTGAAGGAGGAGGGCAACTCCTGTGGGGCCTCCTGTGGGGACCACTCGTCTaGGCTCACTCCTGTTCCGTG +
Preference number: 4 (lower is better)
Translates to: SPRQGQAEGGGQLLWGLLWGPLV*AHSCSV
Trigger: CACGGAACAGGAGTGAGCCCAGACGAGTGGTCCCCA...CAGGAGGCCCCACAGGAGTTGCCCTCCTCCTTCAGCCTGCCCCTGCCTTGGGCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000238807.2
CDS-3UTR CCA 90 bp CACCCACCCCCTACCCTCATCCCAGGACATGACAATGCCACGCACACGCACACAGCCCCGCTGTCCAGTTaGCATTGGGGCCGGGCATGG +
Preference number: 4 (lower is better)
Translates to: HPPPTLIPGHDNATHTHTAPLSS*HWGRAW
Trigger: CCATGCCCGGCCCCAATGCCAACTGGACAGCGGGGC...TGTGTGCGTGTGCGTGGCATTGTCATGTCCTGGGATGAGGGTAGGGGGTGGGTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CCA 90 bp CTGCCACAGGTAGGCTACAGGGCAGCCAAAGCCATCCAGCCACTCTCCCAGGGCTCCTCTTCCTCTTGCTaGCCACCAGCCACCCCTGCC +
Preference number: 4 (lower is better)
Translates to: LPQVGYRAAKAIQPLSQGSSSSC*PPATPA
Trigger: GGCAGGGGTGGCTGGTGGCCAGCAAGAGGAAGAGGA...GCCCTGGGAGAGTGGCTGGATGGCTTTGGCTGCCCTGTAGCCTACCTGTGGCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR TCA 90 bp CTCTCCCAGGGCAGCCAGCTGGGGCAGACACCTCAGGAGTACACCAGGGGAAGGGCTGCAGGGCATGGTTaGAGGTCTCCACATCATCCC +
Preference number: 4 (lower is better)
Translates to: LSQGSQLGQTPQEYTRGRAAGHG*RSPHHP
Trigger: GGGATGATGTGGAGACCTTCAACCATGCCCTGCAGC...CCTTCCCCTGGTGTACTCCTGAGGTGTCTGCCCCAGCTGGCTGCCCTGGGAGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR TCA 90 bp GCCACAGGTAGGCTACAGGGCAGCCAAAGCCATCCAGCCACTCTCCCAGGGCAGTGTGAACTGAGCACATaGCTGGGATGGGCCACCCGG +
Preference number: 4 (lower is better)
Translates to: ATGRLQGSQSHPATLPGQCELST*LGWATR
Trigger: CCGGGTGGCCCATCCCAGTCATGTGCTCAGTTCACA...CTGCCCTGGGAGAGTGGCTGGATGGCTTTGGCTGCCCTGTAGCCTACCTGTGGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR TCA 90 bp CACCCACCCCCTACCCTCATCCCAGGACATGACAATGCCACGCACACGCACACACGGGGCCTCCCACCCTaGAGCCTCATTCTGATGCCC +
Preference number: 4 (lower is better)
Translates to: HPPPTLIPGHDNATHTHTRGLPP*SLILMP
Trigger: GGGCATCAGAATGAGGCTTCAGGGTGGGAGGCCCCG...TGTGTGCGTGTGCGTGGCATTGTCATGTCCTGGGATGAGGGTAGGGGGTGGGTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000239139.2
CDS-3UTR CCA 90 bp CTGCCACAGGTAGGCTACAGGGCAGCCAAAGCCATCCAGCCACTCTCCCAGGGCGGTACCCCAGATCCATaGAGCCGGAAGCCGCAGATC +
Preference number: 4 (lower is better)
Translates to: LPQVGYRAAKAIQPLSQGGTPDP*SRKPQI
Trigger: GATCTGCGGCTTCCGGCTCCATGGATCTGGGGTACC...GCCCTGGGAGAGTGGCTGGATGGCTTTGGCTGCCCTGTAGCCTACCTGTGGCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CCA 90 bp CCACCCCCTACCCTCATCCCAGGACATGACAATGCCACGCACACGCACACATACGCCCCGCTGTCCAGTTaGCATTGGGGCCGGGCATGG +
Preference number: 4 (lower is better)
Translates to: PPPTLIPGHDNATHTHTYAPLSS*HWGRAW
Trigger: CCATGCCCGGCCCCAATGCCAACTGGACAGCGGGGC...GTATGTGTGCGTGTGCGTGGCATTGTCATGTCCTGGGATGAGGGTAGGGGGTGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR TCA 90 bp CTCTCCCAGGGCAGCCAGCTGGGGCAGACACCTCAGGAGTACACCAGGGGAAGGCAGGTGGGCTTCACCTaGATCTCCACCTCAGCATCA +
Preference number: 4 (lower is better)
Translates to: LSQGSQLGQTPQEYTRGRQVGFT*ISTSAS
Trigger: TGATGCTGAGGTGGAGATTCAGGTGAAGCCCACCTG...CCTTCCCCTGGTGTACTCCTGAGGTGTCTGCCCCAGCTGGCTGCCCTGGGAGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR TCA 90 bp GGGGGAGGGGCAACAGAAGGAAAGCCCTCACGGACAGAACAGAGTAGAGAAGGACATCCCCCTCCAGGGTaGGCAGGGACTGCGAGGGGT +
Preference number: 4 (lower is better)
Translates to: GGGATEGKPSRTEQSREGHPPPG*AGTARG
Trigger: ACCCCTCGCAGTCCCTGCTCACCCTGGAGGGGGATG...TCCTTCTCTACTCTGTTCTGTCCGTGAGGGCTTTCCTTCTGTTGCCCCTCCCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR TCA 90 bp CTCTCCCAGGGCAGCCAGCTGGGGCAGACACCTCAGGAGTACACCAGGGGAAGGTTGGCCTCCACCTGGTaGGAAATGGAGCAGGTGATC +
Preference number: 4 (lower is better)
Translates to: LSQGSQLGQTPQEYTRGRLASTW*EMEQVI
Trigger: GATCACCTGCTCCATTTCTCACCAGGTGGAGGCCAA...CCTTCCCCTGGTGTACTCCTGAGGTGTCTGCCCCAGCTGGCTGCCCTGGGAGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR GCA 90 bp CTCTCCCAGGGCAGCCAGCTGGGGCAGACACCTCAGGAGTACACCAGGGGAAGGCCACCCAGGGGAACTTaGACAGCTTGTGTGCCATTG +
Preference number: 4 (lower is better)
Translates to: LSQGSQLGQTPQEYTRGRPPRGT*TACVPL
Trigger: CAATGGCACACAAGCTGTGCAAGTTCCCCTGGGTGG...CCTTCCCCTGGTGTACTCCTGAGGTGTCTGCCCCAGCTGGCTGCCCTGGGAGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR GCA 90 bp GCCACAGGTAGGCTACAGGGCAGCCAAAGCCATCCAGCCACTCTCCCAGGGCAGCAGCCCCTCCCGACATaGATAGAGGCACTCGATGAC +
Preference number: 4 (lower is better)
Translates to: ATGRLQGSQSHPATLPGQQPLPT*IEALDD
Trigger: GTCATCGAGTGCCTCTATGCATGTCGGGAGGGGCTG...CTGCCCTGGGAGAGTGGCTGGATGGCTTTGGCTGCCCTGTAGCCTACCTGTGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR GCA 90 bp AGGAGGGCAACTCCTGTGGGGCCTCCTGGGGTTCTGAGATTGAAGGACTGCTCCGCCACCAGCCACCCCTaGCACACAGGTCTGCTGGTT +
Preference number: 4 (lower is better)
Translates to: RRATPVGPPGVLRLKDCSATSHP*HTGLLV
Trigger: AACCAGCAGACCTGTGTGGCAGGGGTGGCTGGTGGC...GGAGCAGTCCTTCAATCTCAGAACCCCAGGAGGCCCCACAGGAGTTGCCCTCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
ENSMUST00000238807.2
CDS-3UTR GCA 90 bp AGGAGGGCAACTCCTGTGGGGCCTCCTGGGGTTCTGAGATTGAAGGACTGCTCCGGACAAACGTCGCCATaGCCCATACCCGAGCCAGGC +
Preference number: 4 (lower is better)
Translates to: RRATPVGPPGVLRLKDCSGQTSP*PIPEPG
Trigger: GCCTGGCTCGGGTATGGGGCATGGCGACGTTTGTCC...GGAGCAGTCCTTCAATCTCAGAACCCCAGGAGGCCCCACAGGAGTTGCCCTCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238807.2
CDS-3UTR CCA 90 bp CTGCCACAGGTAGGCTACAGGGCAGCCAAAGCCATCCAGCCACTCTCCCAGGGCCCTTGGCCACATGGCTaGTCTGCAGCTCTATGGTGG +
Preference number: 4 (lower is better)
Translates to: LPQVGYRAAKAIQPLSQGPWPHG*SAALWW
Trigger: CCACCATAGAGCTGCAGACCAGCCATGTGGCCAAGG...GCCCTGGGAGAGTGGCTGGATGGCTTTGGCTGCCCTGTAGCCTACCTGTGGCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR TCA 90 bp CTGCCACAGGTAGGCTACAGGGCAGCCAAAGCCATCCAGCCACTCTCCCAGGGCCAGGTGGGCTTCACCTaGATCTCCACCTCAGCATCA +
Preference number: 4 (lower is better)
Translates to: LPQVGYRAAKAIQPLSQGQVGFT*ISTSAS
Trigger: TGATGCTGAGGTGGAGATTCAGGTGAAGCCCACCTG...GCCCTGGGAGAGTGGCTGGATGGCTTTGGCTGCCCTGTAGCCTACCTGTGGCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR TCA 90 bp CTCTCCCAGGGCAGCCAGCTGGGGCAGACACCTCAGGAGTACACCAGGGGAAGGAGCTCTATGGTGGCCTaGATGTTCCACAGTGGCTCA +
Preference number: 4 (lower is better)
Translates to: LSQGSQLGQTPQEYTRGRSSMVA*MFHSGS
Trigger: TGAGCCACTGTGGAACATTCAGGCCACCATAGAGCT...CCTTCCCCTGGTGTACTCCTGAGGTGTCTGCCCCAGCTGGCTGCCCTGGGAGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR TCA 90 bp ACCCACCCCCTACCCTCATCCCAGGACATGACAATGCCACGCACACGCACACATCCTGAGACGCGGCGATaGAGGGAGTGGATCCGAACG +
Preference number: 4 (lower is better)
Translates to: THPLPSSQDMTMPRTRTHPETRR*REWIRT
Trigger: CGTTCGGATCCACTCCCTTCATCGCCGCGTCTCAGG...ATGTGTGCGTGTGCGTGGCATTGTCATGTCCTGGGATGAGGGTAGGGGGTGGGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR TCA 90 bp AGGAGGGCAACTCCTGTGGGGCCTCCTGGGGTTCTGAGATTGAAGGACTGCTCCTACAGACCTGGACCCTaGGGGCCACAGAACGAGCAG +
Preference number: 4 (lower is better)
Translates to: RRATPVGPPGVLRLKDCSYRPGP*GPQNEQ
Trigger: CTGCTCGTTCTGTGGCCCTCAGGGTCCAGGTCTGTA...GGAGCAGTCCTTCAATCTCAGAACCCCAGGAGGCCCCACAGGAGTTGCCCTCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000238807.2
CDS-3UTR GCA 90 bp CTCTCCCAGGGCAGCCAGCTGGGGCAGACACCTCAGGAGTACACCAGGGGAAGGCTTTTGTTCCAGCCTTaGCAGCTGGGTTTGCAGGTG +
Preference number: 4 (lower is better)
Translates to: LSQGSQLGQTPQEYTRGRLLFQP*QLGLQV
Trigger: CACCTGCAAACCCAGCTGGCAAGGCTGGAACAAAAG...CCTTCCCCTGGTGTACTCCTGAGGTGTCTGCCCCAGCTGGCTGCCCTGGGAGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR GCA 90 bp AGGCTGAAGGAGGAGGGCAACTCCTGTGGGGCCTCCTGGGGTTCTGAGATTGAAGCCACCAGCCACCCCTaGCACACAGGTCTGCTGGTT +
Preference number: 4 (lower is better)
Translates to: RLKEEGNSCGASWGSEIEATSHP*HTGLLV
Trigger: AACCAGCAGACCTGTGTGGCAGGGGTGGCTGGTGGC...TTCAATCTCAGAACCCCAGGAGGCCCCACAGGAGTTGCCCTCCTCCTTCAGCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
ENSMUST00000238807.2
CDS-3UTR GCA 90 bp AGGCTGAAGGAGGAGGGCAACTCCTGTGGGGCCTCCTGGGGTTCTGAGATTGAAGCTGGGGGAGTCGGCTaGTTCCGAGTCACTGCTGTC +
Preference number: 4 (lower is better)
Translates to: RLKEEGNSCGASWGSEIEAGGVG*FRVTAV
Trigger: GACAGCAGTGACTCGGAAGCAGCCGACTCCCCCAGC...TTCAATCTCAGAACCCCAGGAGGCCCCACAGGAGTTGCCCTCCTCCTTCAGCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
ENSMUST00000238807.2
CDS-3UTR CCA 90 bp CCACCCCCTACCCTCATCCCAGGACATGACAATGCCACGCACACGCACACATACAGAGCCCAGCCCTGCTaGACCACCCAGGGGAACTTG +
Preference number: 4 (lower is better)
Translates to: PPPTLIPGHDNATHTHTYRAQPC*TTQGNL
Trigger: CAAGTTCCCCTGGGTGGTCCAGCAGGGCTGGGCTCT...GTATGTGTGCGTGTGCGTGGCATTGTCATGTCCTGGGATGAGGGTAGGGGGTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CCA 90 bp AGGAGGGCAACTCCTGTGGGGCCTCCTGGGGTTCTGAGATTGAAGGACTGCTCCAGCCCAGAACCCTCCTaGGCAGCTGGATCGCTACCT +
Preference number: 4 (lower is better)
Translates to: RRATPVGPPGVLRLKDCSSPEPS*AAGSLP
Trigger: AGGTAGCGATCCAGCTGCCCAGGAGGGTTCTGGGCT...GGAGCAGTCCTTCAATCTCAGAACCCCAGGAGGCCCCACAGGAGTTGCCCTCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238807.2
CDS-3UTR GCA 90 bp AGAAGAGGGAGGAGCAGGGATCCCCAGAGTGAAATGGAAATAGAGGCGAGGGGATCGCTGAAGCCATCCTaGGGCCCAGAGCCCAGCCCT +
Preference number: 4 (lower is better)
Translates to: RRGRSRDPQSEMEIEARGSLKPS*GPEPSP
Trigger: AGGGCTGGGCTCTGGGCCGCAGGATGGCTTCAGCGA...TCCCCTCGCCTCTATTTCCATTTCACTCTGGGGATCCCTGCTCCTCCCTCTTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR GCA 90 bp CTGCCACAGGTAGGCTACAGGGCAGCCAAAGCCATCCAGCCACTCTCCCAGGGCCCTCCTTCTTCCCCTTaGTGGGAGTCACACTATGCT +
Preference number: 4 (lower is better)
Translates to: LPQVGYRAAKAIQPLSQGPPSSP*WESHYA
Trigger: AGCATAGTGTGACTCCCAGCAAGGGGAAGAAGGAGG...GCCCTGGGAGAGTGGCTGGATGGCTTTGGCTGCCCTGTAGCCTACCTGTGGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR GCA 90 bp CTCTCCCAGGGCAGCCAGCTGGGGCAGACACCTCAGGAGTACACCAGGGGAAGGTCATCATCACACACCTaGTCCAGCTTCCAGAGGAAC +
Preference number: 4 (lower is better)
Translates to: LSQGSQLGQTPQEYTRGRSSSHT*SSFQRN
Trigger: GTTCCTCTGGAAGCTGGAGCAGGTGTGTGATGATGA...CCTTCCCCTGGTGTACTCCTGAGGTGTCTGCCCCAGCTGGCTGCCCTGGGAGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR GCA 90 bp GGGGGAGGGGCAACAGAAGGAAAGCCCTCACGGACAGAACAGAGTAGAGAAGGAAGGGTGAGCAGGGACTaGGAGGGGTTCACGTGGACC +
Preference number: 4 (lower is better)
Translates to: GGGATEGKPSRTEQSREGRVSRD*EGFTWT
Trigger: GGTCCACGTGAACCCCTCGCAGTCCCTGCTCACCCT...TCCTTCTCTACTCTGTTCTGTCCGTGAGGGCTTTCCTTCTGTTGCCCCTCCCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR GCA 90 bp GGAGGGGGAGGGGCAACAGAAGGAAAGCCCTCACGGACAGAACAGAGTAGAGAAAGGGTGAGCAGGGACTaGGAGGGGTTCACGTGGACC +
Preference number: 4 (lower is better)
Translates to: GGGGATEGKPSRTEQSRERVSRD*EGFTWT
Trigger: GGTCCACGTGAACCCCTCGCAGTCCCTGCTCACCCT...TTCTCTACTCTGTTCTGTCCGTGAGGGCTTTCCTTCTGTTGCCCCTCCCCCTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR GCA 90 bp AGGACACAGCAGCAGGCTCCCATCAATTGCATTCCCACCTCAACCAAGGCTGTTCCCTACTTCCACCGCTaGACTCCGGGGCCTCCCACC +
Preference number: 4 (lower is better)
Translates to: RTQQQAPINCIPTSTKAVPYFHR*TPGPPT
Trigger: GGTGGGAGGCCCCGGAGTGCAGCGGTGGAAGTAGGG...AACAGCCTTGGTTGAGGTGGGAATGCAATTGATGGGAGCCTGCTGCTGTGTCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000239139.2
CDS-3UTR CCA 90 bp CTCTCCCAGGGCAGCCAGCTGGGGCAGACACCTCAGGAGTACACCAGGGGAAGGCTGAATGTTCCACAGTaGCTCATCACAGGTCTCCAG +
Preference number: 4 (lower is better)
Translates to: LSQGSQLGQTPQEYTRGRLNVPQ*LITGLQ
Trigger: CTGGAGACCTGTGATGAGCCACTGTGGAACATTCAG...CCTTCCCCTGGTGTACTCCTGAGGTGTCTGCCCCAGCTGGCTGCCCTGGGAGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CCA 90 bp GGGGGAGGGGCAACAGAAGGAAAGCCCTCACGGACAGAACAGAGTAGAGAAGGACTCGGTCGCAGCCCTTaGCCACATGGCTGGTCTGCA +
Preference number: 4 (lower is better)
Translates to: GGGATEGKPSRTEQSREGLGRSP*PHGWSA
Trigger: TGCAGACCAGCCATGTGGCCAAGGGCTGCGACCGAG...TCCTTCTCTACTCTGTTCTGTCCGTGAGGGCTTTCCTTCTGTTGCCCCTCCCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CCA 90 bp AGGCTGAAGGAGGAGGGCAACTCCTGTGGGGCCTCCTGGGGTTCTGAGATTGAACTGTCCAGTTGGCATTaGGGCCGGGCATGGGCAACA +
Preference number: 4 (lower is better)
Translates to: RLKEEGNSCGASWGSEIELSSWH*GRAWAT
Trigger: TGTTGCCCATGCCCGGCCCCAATGCCAACTGGACAG...TTCAATCTCAGAACCCCAGGAGGCCCCACAGGAGTTGCCCTCCTCCTTCAGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CCA 90 bp CTGCCACAGGTAGGCTACAGGGCAGCCAAAGCCATCCAGCCACTCTCCCAGGGCATGAGACCATTGTCGTaGATGAGAGCCGGGTCGAAG +
Preference number: 4 (lower is better)
Translates to: LPQVGYRAAKAIQPLSQGMRPLS*MRAGSK
Trigger: CTTCGACCCGGCTCTCATCCACGACAATGGTCTCAT...GCCCTGGGAGAGTGGCTGGATGGCTTTGGCTGCCCTGTAGCCTACCTGTGGCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CCA 90 bp CCACCCCCTACCCTCATCCCAGGACATGACAATGCCACGCACACGCACACATACACCATGGAGTTCCGGTaGGAGCTGGCCAGGCTGTGT +
Preference number: 4 (lower is better)
Translates to: PPPTLIPGHDNATHTHTYTMEFR*ELARLC
Trigger: ACACAGCCTGGCCAGCTCCCACCGGAACTCCATGGT...GTATGTGTGCGTGTGCGTGGCATTGTCATGTCCTGGGATGAGGGTAGGGGGTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CCA 90 bp AGGCTGAAGGAGGAGGGCAACTCCTGTGGGGCCTCCTGGGGTTCTGAGATTGAAGTCTCTCATCACTGCTaGGGGAGTCGGCTGCTTCCG +
Preference number: 4 (lower is better)
Translates to: RLKEEGNSCGASWGSEIEVSHHC*GSRLLP
Trigger: CGGAAGCAGCCGACTCCCCCAGCAGTGATGAGAGAC...TTCAATCTCAGAACCCCAGGAGGCCCCACAGGAGTTGCCCTCCTCCTTCAGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
ENSMUST00000238807.2
CDS-3UTR TCA 90 bp CACCCACCCCCTACCCTCATCCCAGGACATGACAATGCCACGCACACGCACACAGCCATGGACAGTCAGTaGGTAGTGAGAGTAGCCGTC +
Preference number: 4 (lower is better)
Translates to: HPPPTLIPGHDNATHTHTAMDSQ*VVRVAV
Trigger: GACGGCTACTCTCACTACTCACTGACTGTCCATGGC...TGTGTGCGTGTGCGTGGCATTGTCATGTCCTGGGATGAGGGTAGGGGGTGGGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR TCA 90 bp AGGCTGAAGGAGGAGGGCAACTCCTGTGGGGCCTCCTGGGGTTCTGAGATTGAAGACCATTGTCGTGGATaGGAGCCGGGTCGAAGGAGA +
Preference number: 4 (lower is better)
Translates to: RLKEEGNSCGASWGSEIEDHCRG*EPGRRR
Trigger: TCTCCTTCGACCCGGCTCTCATCCACGACAATGGTC...TTCAATCTCAGAACCCCAGGAGGCCCCACAGGAGTTGCCCTCCTCCTTCAGCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR TCA 90 bp TGTGGGGCCTCCTGGGGTTCTGAGATTGAAGGACTGCTCCAAATGAAGAGCTCTGCTCTCCAGGCGACCTaGGCGCACGCTGAAACCAGC +
Preference number: 4 (lower is better)
Translates to: CGASWGSEIEGLLQMKSSALQAT*AHAETS
Trigger: GCTGGTTTCAGCGTGCGCTCAGGTCGCCTGGAGAGC...AGAGCTCTTCATTTGGAGCAGTCCTTCAATCTCAGAACCCCAGGAGGCCCCACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR TCA 90 bp GGGGGAGGGGCAACAGAAGGAAAGCCCTCACGGACAGAACAGAGTAGAGAAGGAGCTGGGCGGGCAAAATaGGCTGTGCCACTCAGAAGG +
Preference number: 4 (lower is better)
Translates to: GGGATEGKPSRTEQSREGAGRAK*AVPLRR
Trigger: CCTTCTGAGTGGCACAGCTCATTTTGCCCGCCCAGC...TCCTTCTCTACTCTGTTCTGTCCGTGAGGGCTTTCCTTCTGTTGCCCCTCCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR TCA 90 bp AGGCTGAAGGAGGAGGGCAACTCCTGTGGGGCCTCCTGGGGTTCTGAGATTGAAAGGCAGATGTGTTGGTaGGTTCCAGGCCTCGCTGCT +
Preference number: 4 (lower is better)
Translates to: RLKEEGNSCGASWGSEIERQMCW*VPGLAA
Trigger: AGCAGCGAGGCCTGGAACTCACCAACACATCTGCCT...TTCAATCTCAGAACCCCAGGAGGCCCCACAGGAGTTGCCCTCCTCCTTCAGCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR TCA 90 bp ACCCACCCCCTACCCTCATCCCAGGACATGACAATGCCACGCACACGCACACATCCACCCCAGCAATGGTaGGGTAGGCAGATGTGTTGG +
Preference number: 4 (lower is better)
Translates to: THPLPSSQDMTMPRTRTHPPQQW*GRQMCW
Trigger: CCAACACATCTGCCTACCTCACCATTGCTGGGGTGG...ATGTGTGCGTGTGCGTGGCATTGTCATGTCCTGGGATGAGGGTAGGGGGTGGGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR TCA 90 bp CCCCCTACCCTCATCCCAGGACATGACAATGCCACGCACACGCACACATACAAGTGTGAACTGAGCACATaGCTGGGATGGGCCACCCGG +
Preference number: 4 (lower is better)
Translates to: PPTLIPGHDNATHTHTYKCELST*LGWATR
Trigger: CCGGGTGGCCCATCCCAGTCATGTGCTCAGTTCACA...CTTGTATGTGTGCGTGTGCGTGGCATTGTCATGTCCTGGGATGAGGGTAGGGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR TCA 90 bp TGTGGGGCCTCCTGGGGTTCTGAGATTGAAGGACTGCTCCAAATGAAGAGCTCTCGGGGCCTCCCACCCTaGAGCCTCATTCTGATGCCC +
Preference number: 4 (lower is better)
Translates to: CGASWGSEIEGLLQMKSSRGLPP*SLILMP
Trigger: GGGCATCAGAATGAGGCTTCAGGGTGGGAGGCCCCG...AGAGCTCTTCATTTGGAGCAGTCCTTCAATCTCAGAACCCCAGGAGGCCCCACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000238807.2
ENSMUST00000239139.2
CDS-3UTR GCA 90 bp AGAAGAGGGAGGAGCAGGGATCCCCAGAGTGAAATGGAAATAGAGGCGAGGGGACTGGTCCTGCAGGGCTaGTGTTCCTGCGGAGTCTCC +
Preference number: 4 (lower is better)
Translates to: RRGRSRDPQSEMEIEARGLVLQG*CSCGVS
Trigger: GGAGACTCCGCAGGAACAGCAGCCCTGCAGGACCAG...TCCCCTCGCCTCTATTTCCATTTCACTCTGGGGATCCCTGCTCCTCCCTCTTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000239139.2
CDS-3UTR CCA 90 bp GCCACAGGTAGGCTACAGGGCAGCCAAAGCCATCCAGCCACTCTCCCAGGGCAGCTGAATGTTCCACAGTaGCTCATCACAGGTCTCCAG +
Preference number: 4 (lower is better)
Translates to: ATGRLQGSQSHPATLPGQLNVPQ*LITGLQ
Trigger: CTGGAGACCTGTGATGAGCCACTGTGGAACATTCAG...CTGCCCTGGGAGAGTGGCTGGATGGCTTTGGCTGCCCTGTAGCCTACCTGTGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CCA 90 bp GCCACAGGTAGGCTACAGGGCAGCCAAAGCCATCCAGCCACTCTCCCAGGGCAGTGGTCTGCAGCTCTATaGTGGCCTGAATGTTCCACA +
Preference number: 4 (lower is better)
Translates to: ATGRLQGSQSHPATLPGQWSAAL*WPECST
Trigger: TGTGGAACATTCAGGCCACCATAGAGCTGCAGACCA...CTGCCCTGGGAGAGTGGCTGGATGGCTTTGGCTGCCCTGTAGCCTACCTGTGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CCA 90 bp ACCCACCCCCTACCCTCATCCCAGGACATGACAATGCCACGCACACGCACACATCCTTGGCCACATGGCTaGTCTGCAGCTCTATGGTGG +
Preference number: 4 (lower is better)
Translates to: THPLPSSQDMTMPRTRTHPWPHG*SAALWW
Trigger: CCACCATAGAGCTGCAGACCAGCCATGTGGCCAAGG...ATGTGTGCGTGTGCGTGGCATTGTCATGTCCTGGGATGAGGGTAGGGGGTGGGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CCA 90 bp CTCTCCCAGGGCAGCCAGCTGGGGCAGACACCTCAGGAGTACACCAGGGGAAGGAACTCTCATCTGCTTTaGCCTCCACCTGGTGAGAAA +
Preference number: 4 (lower is better)
Translates to: LSQGSQLGQTPQEYTRGRNSHLL*PPPGEK
Trigger: TTTCTCACCAGGTGGAGGCCAAAGCAGATGAGAGTT...CCTTCCCCTGGTGTACTCCTGAGGTGTCTGCCCCAGCTGGCTGCCCTGGGAGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CCA 90 bp CAGCAGGCTCCCATCAATTGCATTCCCACCTCAACCAAGGCTGTTGACATCCCCAGTTCCGGTGGGAGCTaGCCAGGCTGTGTCCAGCCA +
Preference number: 4 (lower is better)
Translates to: QQAPINCIPTSTKAVDIPSSGGS*PGCVQP
Trigger: TGGCTGGACACAGCCTGGCCAGCTCCCACCGGAACT...GGGGATGTCAACAGCCTTGGTTGAGGTGGGAATGCAATTGATGGGAGCCTGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CCA 90 bp CAGCAGGCTCCCATCAATTGCATTCCCACCTCAACCAAGGCTGTTGACATCCCCTCCTCTTCCTCTTGCTaGCCACCAGCCACCCCTGCC +
Preference number: 4 (lower is better)
Translates to: QQAPINCIPTSTKAVDIPSSSSC*PPATPA
Trigger: GGCAGGGGTGGCTGGTGGCCAGCAAGAGGAAGAGGA...GGGGATGTCAACAGCCTTGGTTGAGGTGGGAATGCAATTGATGGGAGCCTGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR TCA 90 bp ACCCACCCCCTACCCTCATCCCAGGACATGACAATGCCACGCACACGCACACATGCCATGGACAGTCAGTaGGTAGTGAGAGTAGCCGTC +
Preference number: 4 (lower is better)
Translates to: THPLPSSQDMTMPRTRTHAMDSQ*VVRVAV
Trigger: GACGGCTACTCTCACTACTCACTGACTGTCCATGGC...ATGTGTGCGTGTGCGTGGCATTGTCATGTCCTGGGATGAGGGTAGGGGGTGGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR TCA 90 bp AAGGCTGTGAGCTGCACACAGAAACACAGGAGCTGCGCTCACGACAACATTGAAGCTCTCCAGGCGACCTaGGCGCACGCTGAAACCAGC +
Preference number: 4 (lower is better)
Translates to: KAVSCTQKHRSCAHDNIEALQAT*AHAETS
Trigger: GCTGGTTTCAGCGTGCGCTCAGGTCGCCTGGAGAGC...TTCAATGTTGTCGTGAGCGCAGCTCCTGTGTTTCTGTGTGCAGCTCACAGCCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR TCA 90 bp AGAAGAGGGAGGAGCAGGGATCCCCAGAGTGAAATGGAAATAGAGGCGAGGGGACATAGAGGCACTCGATaGCCTCACGGCTCTCCAGGC +
Preference number: 4 (lower is better)
Translates to: RRGRSRDPQSEMEIEARGHRGTR*PHGSPG
Trigger: GCCTGGAGAGCCGTGAGGTCATCGAGTGCCTCTATG...TCCCCTCGCCTCTATTTCCATTTCACTCTGGGGATCCCTGCTCCTCCCTCTTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR TCA 90 bp GGAGGGGGAGGGGCAACAGAAGGAAAGCCCTCACGGACAGAACAGAGTAGAGAACCACCCCAGCAATGGTaGGGTAGGCAGATGTGTTGG +
Preference number: 4 (lower is better)
Translates to: GGGGATEGKPSRTEQSREPPQQW*GRQMCW
Trigger: CCAACACATCTGCCTACCTCACCATTGCTGGGGTGG...TTCTCTACTCTGTTCTGTCCGTGAGGGCTTTCCTTCTGTTGCCCCTCCCCCTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR TCA 90 bp TGTGGGGCCTCCTGGGGTTCTGAGATTGAAGGACTGCTCCAAATGAAGAGCTCTCCTGAGACGCGGCGATaGAGGGAGTGGATCCGAACG +
Preference number: 4 (lower is better)
Translates to: CGASWGSEIEGLLQMKSSPETRR*REWIRT
Trigger: CGTTCGGATCCACTCCCTTCATCGCCGCGTCTCAGG...AGAGCTCTTCATTTGGAGCAGTCCTTCAATCTCAGAACCCCAGGAGGCCCCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
ENSMUST00000238807.2
CDS-3UTR TCA 90 bp AGGCTGAAGGAGGAGGGCAACTCCTGTGGGGCCTCCTGGGGTTCTGAGATTGAACTCACTCCTGTTCCGTaGCACCTCCCTTCTCCTTGT +
Preference number: 4 (lower is better)
Translates to: RLKEEGNSCGASWGSEIELTPVP*HLPSPC
Trigger: ACAAGGAGAAGGGAGGTGTCACGGAACAGGAGTGAG...TTCAATCTCAGAACCCCAGGAGGCCCCACAGGAGTTGCCCTCCTCCTTCAGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238807.2
CDS-3UTR GCA 90 bp ACCCACCCCCTACCCTCATCCCAGGACATGACAATGCCACGCACACGCACACATACTTCTTGGTATTGGTaGCATCGGGTCCCTCGCCAC +
Preference number: 4 (lower is better)
Translates to: THPLPSSQDMTMPRTRTHTSWYW*HRVPRH
Trigger: GTGGCGAGGGACCCGATGGCACCAATACCAAGAAGT...ATGTGTGCGTGTGCGTGGCATTGTCATGTCCTGGGATGAGGGTAGGGGGTGGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR GCA 90 bp GCCACAGGTAGGCTACAGGGCAGCCAAAGCCATCCAGCCACTCTCCCAGGGCAGAGAGAAAGGCAATTCTaGAGCCATGGACAGTCAGTG +
Preference number: 4 (lower is better)
Translates to: ATGRLQGSQSHPATLPGQRERQF*SHGQSV
Trigger: CACTGACTGTCCATGGCTGCAGAATTGCCTTTCTCT...CTGCCCTGGGAGAGTGGCTGGATGGCTTTGGCTGCCCTGTAGCCTACCTGTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR GCA 90 bp AGAAGAGGGAGGAGCAGGGATCCCCAGAGTGAAATGGAAATAGAGGCGAGGGGAGGCCCCAATCATGAGTaGAGGTTCCCTCCTGGGTGG +
Preference number: 4 (lower is better)
Translates to: RRGRSRDPQSEMEIEARGGPNHE*RFPPGW
Trigger: CCACCCAGGAGGGAACCTGCACTCATGATTGGGGCC...TCCCCTCGCCTCTATTTCCATTTCACTCTGGGGATCCCTGCTCCTCCCTCTTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR GCA 90 bp CCACCCCCTACCCTCATCCCAGGACATGACAATGCCACGCACACGCACACATACGGACCTTCATGCCTTTaGCCAGGCTCTCGAAATCCC +
Preference number: 4 (lower is better)
Translates to: PPPTLIPGHDNATHTHTYGPSCL*PGSRNP
Trigger: GGGATTTCGAGAGCCTGGGCAAAGGCATGAAGGTCC...GTATGTGTGCGTGTGCGTGGCATTGTCATGTCCTGGGATGAGGGTAGGGGGTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR GCA 90 bp AGGACACAGCAGCAGGCTCCCATCAATTGCATTCCCACCTCAACCAAGGCTGTTGCTGGGGGAGTCGGCTaGTTCCGAGTCACTGCTGTC +
Preference number: 4 (lower is better)
Translates to: RTQQQAPINCIPTSTKAVAGGVG*FRVTAV
Trigger: GACAGCAGTGACTCGGAAGCAGCCGACTCCCCCAGC...AACAGCCTTGGTTGAGGTGGGAATGCAATTGATGGGAGCCTGCTGCTGTGTCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR GCA 90 bp TTCCCACCTCAACCAAGGCTGTTGACATCCCCCTCCCTAATACAGTGCATGGCTGCTGGGGGAGTCGGCTaGTTCCGAGTCACTGCTGTC +
Preference number: 4 (lower is better)
Translates to: FPPQPRLLTSPSLIQCMAAGGVG*FRVTAV
Trigger: GACAGCAGTGACTCGGAAGCAGCCGACTCCCCCAGC...AGCCATGCACTGTATTAGGGAGGGGGATGTCAACAGCCTTGGTTGAGGTGGGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR GCA 90 bp TGTGGGGCCTCCTGGGGTTCTGAGATTGAAGGACTGCTCCAAATGAAGAGCTCTCTGGTCCTGCAGGGCTaGTGTTCCTGCGGAGTCTCC +
Preference number: 4 (lower is better)
Translates to: CGASWGSEIEGLLQMKSSLVLQG*CSCGVS
Trigger: GGAGACTCCGCAGGAACAGCAGCCCTGCAGGACCAG...AGAGCTCTTCATTTGGAGCAGTCCTTCAATCTCAGAACCCCAGGAGGCCCCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000238807.2
ENSMUST00000239139.2
CDS-3UTR CCA 90 bp AGGCTGAGAAGAGGGAGGAGCAGGGATCCCCAGAGTGAAATGGAAATAGAGGCGGGTACCCCAGATCCATaGAGCCGGAAGCCGCAGATC +
Preference number: 4 (lower is better)
Translates to: RLRRGRSRDPQSEMEIEAGTPDP*SRKPQI
Trigger: GATCTGCGGCTTCCGGCTCCATGGATCTGGGGTACC...CGCCTCTATTTCCATTTCACTCTGGGGATCCCTGCTCCTCCCTCTTCTCAGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CCA 90 bp GGAGGGGGAGGGGCAACAGAAGGAAAGCCCTCACGGACAGAACAGAGTAGAGAACAGCCCTTGGCCACATaGCTGGTCTGCAGCTCTATG +
Preference number: 4 (lower is better)
Translates to: GGGGATEGKPSRTEQSREQPLAT*LVCSSM
Trigger: CATAGAGCTGCAGACCAGCCATGTGGCCAAGGGCTG...TTCTCTACTCTGTTCTGTCCGTGAGGGCTTTCCTTCTGTTGCCCCTCCCCCTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CCA 90 bp TTCCCACCTCAACCAAGGCTGTTGACATCCCCCTCCCTAATACAGTGCATGGCTCTCGGTCGCAGCCCTTaGCCACATGGCTGGTCTGCA +
Preference number: 4 (lower is better)
Translates to: FPPQPRLLTSPSLIQCMALGRSP*PHGWSA
Trigger: TGCAGACCAGCCATGTGGCCAAGGGCTGCGACCGAG...AGCCATGCACTGTATTAGGGAGGGGGATGTCAACAGCCTTGGTTGAGGTGGGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CCA 90 bp CAGGTAGGCTACAGGGCAGCCAAAGCCATCCAGCCACTCTCCCAGGGCAGCCAGCTGTGTTACACACAATaGTCTCCTCCTCCTTCTTCC +
Preference number: 4 (lower is better)
Translates to: QVGYRAAKAIQPLSQGSQLCYTQ*SPPPSS
Trigger: GGAAGAAGGAGGAGGAGACCATTGTGTGTAACACAG...CTGGCTGCCCTGGGAGAGTGGCTGGATGGCTTTGGCTGCCCTGTAGCCTACCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CCA 90 bp AGGAGGGCAACTCCTGTGGGGCCTCCTGGGGTTCTGAGATTGAAGGACTGCTCCATGAGACCATTGTCGTaGATGAGAGCCGGGTCGAAG +
Preference number: 4 (lower is better)
Translates to: RRATPVGPPGVLRLKDCSMRPLS*MRAGSK
Trigger: CTTCGACCCGGCTCTCATCCACGACAATGGTCTCAT...GGAGCAGTCCTTCAATCTCAGAACCCCAGGAGGCCCCACAGGAGTTGCCCTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CCA 90 bp CTGCCACAGGTAGGCTACAGGGCAGCCAAAGCCATCCAGCCACTCTCCCAGGGCAACTCTCATCTGCTTTaGCCTCCACCTGGTGAGAAA +
Preference number: 4 (lower is better)
Translates to: LPQVGYRAAKAIQPLSQGNSHLL*PPPGEK
Trigger: TTTCTCACCAGGTGGAGGCCAAAGCAGATGAGAGTT...GCCCTGGGAGAGTGGCTGGATGGCTTTGGCTGCCCTGTAGCCTACCTGTGGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CCA 90 bp CTGCCACAGGTAGGCTACAGGGCAGCCAAAGCCATCCAGCCACTCTCCCAGGGCAAAGCCGGAATTTCCTaGCATAAAGGGCAGCTCCAT +
Preference number: 4 (lower is better)
Translates to: LPQVGYRAAKAIQPLSQGKAGIS*HKGQLH
Trigger: ATGGAGCTGCCCTTTATGCCAGGAAATTCCGGCTTT...GCCCTGGGAGAGTGGCTGGATGGCTTTGGCTGCCCTGTAGCCTACCTGTGGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CCA 90 bp TGTGGGGCCTCCTGGGGTTCTGAGATTGAAGGACTGCTCCAAATGAAGAGCTCTTCCTCTTCCTCTTGCTaGCCACCAGCCACCCCTGCC +
Preference number: 4 (lower is better)
Translates to: CGASWGSEIEGLLQMKSSSSSSC*PPATPA
Trigger: GGCAGGGGTGGCTGGTGGCCAGCAAGAGGAAGAGGA...AGAGCTCTTCATTTGGAGCAGTCCTTCAATCTCAGAACCCCAGGAGGCCCCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
ENSMUST00000238807.2
CDS-3UTR TCA 90 bp CCACCCCCTACCCTCATCCCAGGACATGACAATGCCACGCACACGCACACATACAGCTCTATGGTGGCCTaGATGTTCCACAGTGGCTCA +
Preference number: 4 (lower is better)
Translates to: PPPTLIPGHDNATHTHTYSSMVA*MFHSGS
Trigger: TGAGCCACTGTGGAACATTCAGGCCACCATAGAGCT...GTATGTGTGCGTGTGCGTGGCATTGTCATGTCCTGGGATGAGGGTAGGGGGTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR TCA 90 bp CAGCAGGCTCCCATCAATTGCATTCCCACCTCAACCAAGGCTGTTGACATCCCCGACCTGAGCGCACGCTaGAACCAGCTAGGTAGCCAT +
Preference number: 4 (lower is better)
Translates to: QQAPINCIPTSTKAVDIPDLSAR*NQLGSH
Trigger: ATGGCTACCTAGCTGGTTTCAGCGTGCGCTCAGGTC...GGGGATGTCAACAGCCTTGGTTGAGGTGGGAATGCAATTGATGGGAGCCTGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR TCA 90 bp AACCCAGGCAAAGCAGGCCATGGAGAAAGGAATAGAGACAGTAAGACCTTGGTACATCCCCCTCCAGGGTaGGCAGGGACTGCGAGGGGT +
Preference number: 4 (lower is better)
Translates to: NPGKAGHGERNRDSKTLVHPPPG*AGTARG
Trigger: ACCCCTCGCAGTCCCTGCTCACCCTGGAGGGGGATG...TACCAAGGTCTTACTGTCTCTATTCCTTTCTCCATGGCCTGCTTTGCCTGGGTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR TCA 90 bp GGGGGAGGGGCAACAGAAGGAAAGCCCTCACGGACAGAACAGAGTAGAGAAGGAATGGAGCAGGTGATCTaGAGATCGGGGAACAAGGGG +
Preference number: 4 (lower is better)
Translates to: GGGATEGKPSRTEQSREGMEQVI*RSGNKG
Trigger: CCCCTTGTTCCCCGATCTTCAGATCACCTGCTCCAT...TCCTTCTCTACTCTGTTCTGTCCGTGAGGGCTTTCCTTCTGTTGCCCCTCCCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR TCA 90 bp AGGCTGAGAAGAGGGAGGAGCAGGGATCCCCAGAGTGAAATGGAAATAGAGGCGAGGCAGATGTGTTGGTaGGTTCCAGGCCTCGCTGCT +
Preference number: 4 (lower is better)
Translates to: RLRRGRSRDPQSEMEIEARQMCW*VPGLAA
Trigger: AGCAGCGAGGCCTGGAACTCACCAACACATCTGCCT...CGCCTCTATTTCCATTTCACTCTGGGGATCCCTGCTCCTCCCTCTTCTCAGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR TCA 90 bp AGGAGGGCAACTCCTGTGGGGCCTCCTGGGGTTCTGAGATTGAAGGACTGCTCCCATGGACCTTGGAGCTaGTGGTGGAAAAGCAGATGT +
Preference number: 4 (lower is better)
Translates to: RRATPVGPPGVLRLKDCSHGPWS*WWKSRC
Trigger: ACATCTGCTTTTCCACCATCAGCTCCAAGGTCCATG...GGAGCAGTCCTTCAATCTCAGAACCCCAGGAGGCCCCACAGGAGTTGCCCTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000238807.2
CDS-3UTR GCA 90 bp GGGGGAGGGGCAACAGAAGGAAAGCCCTCACGGACAGAACAGAGTAGAGAAGGAACTTCTTGGTATTGGTaGCATCGGGTCCCTCGCCAC +
Preference number: 4 (lower is better)
Translates to: GGGATEGKPSRTEQSREGTSWYW*HRVPRH
Trigger: GTGGCGAGGGACCCGATGGCACCAATACCAAGAAGT...TCCTTCTCTACTCTGTTCTGTCCGTGAGGGCTTTCCTTCTGTTGCCCCTCCCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR GCA 90 bp AGGCTGAGAAGAGGGAGGAGCAGGGATCCCCAGAGTGAAATGGAAATAGAGGCGCAGCCCCTCCCGACATaGATAGAGGCACTCGATGAC +
Preference number: 4 (lower is better)
Translates to: RLRRGRSRDPQSEMEIEAQPLPT*IEALDD
Trigger: GTCATCGAGTGCCTCTATGCATGTCGGGAGGGGCTG...CGCCTCTATTTCCATTTCACTCTGGGGATCCCTGCTCCTCCCTCTTCTCAGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR GCA 90 bp GGAGGGGGAGGGGCAACAGAAGGAAAGCCCTCACGGACAGAACAGAGTAGAGAATCACGTGGACCTTCATaGCTTTGCCCAGGCTCTCGA +
Preference number: 4 (lower is better)
Translates to: GGGGATEGKPSRTEQSRESRGPS*LCPGSR
Trigger: TCGAGAGCCTGGGCAAAGGCATGAAGGTCCACGTGA...TTCTCTACTCTGTTCTGTCCGTGAGGGCTTTCCTTCTGTTGCCCCTCCCCCTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR GCA 90 bp AGGACACAGCAGCAGGCTCCCATCAATTGCATTCCCACCTCAACCAAGGCTGTTTCCAGGCCTCGCTGCTaGAGGGAAGCCATGTCCAAG +
Preference number: 4 (lower is better)
Translates to: RTQQQAPINCIPTSTKAVSRPRC*REAMSK
Trigger: CTTGGACATGGCTTCCCTGCAGCAGCGAGGCCTGGA...AACAGCCTTGGTTGAGGTGGGAATGCAATTGATGGGAGCCTGCTGCTGTGTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR GCA 90 bp TGTGGGGCCTCCTGGGGTTCTGAGATTGAAGGACTGCTCCAAATGAAGAGCTCTTCCAGGCCTCGCTGCTaGAGGGAAGCCATGTCCAAG +
Preference number: 4 (lower is better)
Translates to: CGASWGSEIEGLLQMKSSSRPRC*REAMSK
Trigger: CTTGGACATGGCTTCCCTGCAGCAGCGAGGCCTGGA...AGAGCTCTTCATTTGGAGCAGTCCTTCAATCTCAGAACCCCAGGAGGCCCCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR GCA 90 bp GAGGGGCAACAGAAGGAAAGCCCTCACGGACAGAACAGAGTAGAGAAGGACACACTGTCCTCTTCCTCTTaGTGGCCACCAGCCACCCCT +
Preference number: 4 (lower is better)
Translates to: EGQQKESPHGQNRVEKDTLSSSS*WPPATP
Trigger: AGGGGTGGCTGGTGGCCAGCAAGAGGAAGAGGACAG...TGTGTCCTTCTCTACTCTGTTCTGTCCGTGAGGGCTTTCCTTCTGTTGCCCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR GCA 90 bp AGGACACAGCAGCAGGCTCCCATCAATTGCATTCCCACCTCAACCAAGGCTGTTCTGTCCTCTTCCTCTTaGTGGCCACCAGCCACCCCT +
Preference number: 4 (lower is better)
Translates to: RTQQQAPINCIPTSTKAVLSSSS*WPPATP
Trigger: AGGGGTGGCTGGTGGCCAGCAAGAGGAAGAGGACAG...AACAGCCTTGGTTGAGGTGGGAATGCAATTGATGGGAGCCTGCTGCTGTGTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR GCA 90 bp AGGCTGAAGGAGGAGGGCAACTCCTGTGGGGCCTCCTGGGGTTCTGAGATTGAACTGCTTCCGAGTCACTaGTGTCCTCTTCCTCTTGCT +
Preference number: 4 (lower is better)
Translates to: RLKEEGNSCGASWGSEIELLPSH*CPLPLA
Trigger: AGCAAGAGGAAGAGGACAGCAGTGACTCGGAAGCAG...TTCAATCTCAGAACCCCAGGAGGCCCCACAGGAGTTGCCCTCCTCCTTCAGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
ENSMUST00000238807.2
CDS-3UTR GCA 90 bp AGGAGGGCAACTCCTGTGGGGCCTCCTGGGGTTCTGAGATTGAAGGACTGCTCCGTGGAAAAGCAGATGTaGAGACACAGGCACATGCCA +
Preference number: 4 (lower is better)
Translates to: RRATPVGPPGVLRLKDCSVEKQM*RHRHMP
Trigger: TGGCATGTGCCTGTGTCTGCACATCTGCTTTTCCAC...GGAGCAGTCCTTCAATCTCAGAACCCCAGGAGGCCCCACAGGAGTTGCCCTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000238807.2
CDS-3UTR CCA 90 bp CCCCCTACCCTCATCCCAGGACATGACAATGCCACGCACACGCACACATACAAGGAGACTTCTTGGTATTaGTGCCATCGGGTCCCTCGC +
Preference number: 4 (lower is better)
Translates to: PPTLIPGHDNATHTHTYKETSWY*CHRVPR
Trigger: GCGAGGGACCCGATGGCACCAATACCAAGAAGTCTC...CTTGTATGTGTGCGTGTGCGTGGCATTGTCATGTCCTGGGATGAGGGTAGGGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CCA 90 bp AGGAGGGCAACTCCTGTGGGGCCTCCTGGGGTTCTGAGATTGAAGGACTGCTCCTGGTCTGCAGCTCTATaGTGGCCTGAATGTTCCACA +
Preference number: 4 (lower is better)
Translates to: RRATPVGPPGVLRLKDCSWSAAL*WPECST
Trigger: TGTGGAACATTCAGGCCACCATAGAGCTGCAGACCA...GGAGCAGTCCTTCAATCTCAGAACCCCAGGAGGCCCCACAGGAGTTGCCCTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CCA 90 bp CCACCCCCTACCCTCATCCCAGGACATGACAATGCCACGCACACGCACACATACCTCAAAGTCCACAGCTaGGCGGGCAAAATGAGCTGT +
Preference number: 4 (lower is better)
Translates to: PPPTLIPGHDNATHTHTYLKVHS*AGKMSC
Trigger: ACAGCTCATTTTGCCCGCCCAGCTGTGGACTTTGAG...GTATGTGTGCGTGTGCGTGGCATTGTCATGTCCTGGGATGAGGGTAGGGGGTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CCA 90 bp CCCACAACCCAGGCAAAGCAGGCCATGGAGAAAGGAATAGAGACAGTAAGACCTAGTTCCGGTGGGAGCTaGCCAGGCTGTGTCCAGCCA +
Preference number: 4 (lower is better)
Translates to: PTTQAKQAMEKGIETVRPSSGGS*PGCVQP
Trigger: TGGCTGGACACAGCCTGGCCAGCTCCCACCGGAACT...AGGTCTTACTGTCTCTATTCCTTTCTCCATGGCCTGCTTTGCCTGGGTTGTGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CCA 90 bp TGTGGGGCCTCCTGGGGTTCTGAGATTGAAGGACTGCTCCAAATGAAGAGCTCTGTCTCTCATCACTGCTaGGGGAGTCGGCTGCTTCCG +
Preference number: 4 (lower is better)
Translates to: CGASWGSEIEGLLQMKSSVSHHC*GSRLLP
Trigger: CGGAAGCAGCCGACTCCCCCAGCAGTGATGAGAGAC...AGAGCTCTTCATTTGGAGCAGTCCTTCAATCTCAGAACCCCAGGAGGCCCCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
ENSMUST00000238807.2
CDS-3UTR TCA 90 bp AGGCTGAGAAGAGGGAGGAGCAGGGATCCCCAGAGTGAAATGGAAATAGAGGCGCGTCAGTATACAGTGTaGCCGTGGGGAACTCCAGGT +
Preference number: 4 (lower is better)
Translates to: RLRRGRSRDPQSEMEIEARQYTV*PWGTPG
Trigger: ACCTGGAGTTCCCCACGGTCACACTGTATACTGACG...CGCCTCTATTTCCATTTCACTCTGGGGATCCCTGCTCCTCCCTCTTCTCAGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR TCA 90 bp AGGACACAGCAGCAGGCTCCCATCAATTGCATTCCCACCTCAACCAAGGCTGTTGCTGCAGGGCATGGTTaGAGGTCTCCACATCATCCC +
Preference number: 4 (lower is better)
Translates to: RTQQQAPINCIPTSTKAVAAGHG*RSPHHP
Trigger: GGGATGATGTGGAGACCTTCAACCATGCCCTGCAGC...AACAGCCTTGGTTGAGGTGGGAATGCAATTGATGGGAGCCTGCTGCTGTGTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR TCA 90 bp AGGCTGAGAAGAGGGAGGAGCAGGGATCCCCAGAGTGAAATGGAAATAGAGGCGATGGAGCAGGTGATCTaGAGATCGGGGAACAAGGGG +
Preference number: 4 (lower is better)
Translates to: RLRRGRSRDPQSEMEIEAMEQVI*RSGNKG
Trigger: CCCCTTGTTCCCCGATCTTCAGATCACCTGCTCCAT...CGCCTCTATTTCCATTTCACTCTGGGGATCCCTGCTCCTCCCTCTTCTCAGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR TCA 90 bp AGGAGGGCAACTCCTGTGGGGCCTCCTGGGGTTCTGAGATTGAAGGACTGCTCCGTGTACAATCTCATCTaGCATGCGTGTGTCTGTCAC +
Preference number: 4 (lower is better)
Translates to: RRATPVGPPGVLRLKDCSVYNLI*HACVCH
Trigger: GTGACAGACACACGCATGTCAGATGAGATTGTACAC...GGAGCAGTCCTTCAATCTCAGAACCCCAGGAGGCCCCACAGGAGTTGCCCTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR GCA 90 bp CCCCCTACCCTCATCCCAGGACATGACAATGCCACGCACACGCACACATACAAGCCTCCTTCTTCCCCTTaGTGGGAGTCACACTATGCT +
Preference number: 4 (lower is better)
Translates to: PPTLIPGHDNATHTHTYKPPSSP*WESHYA
Trigger: AGCATAGTGTGACTCCCAGCAAGGGGAAGAAGGAGG...CTTGTATGTGTGCGTGTGCGTGGCATTGTCATGTCCTGGGATGAGGGTAGGGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR GCA 90 bp AAGGCTGTGAGCTGCACACAGAAACACAGGAGCTGCGCTCACGACAACATTGAAGGCCCCAATCATGAGTaGAGGTTCCCTCCTGGGTGG +
Preference number: 4 (lower is better)
Translates to: KAVSCTQKHRSCAHDNIEGPNHE*RFPPGW
Trigger: CCACCCAGGAGGGAACCTGCACTCATGATTGGGGCC...TTCAATGTTGTCGTGAGCGCAGCTCCTGTGTTTCTGTGTGCAGCTCACAGCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR GCA 90 bp GGAGGGGGAGGGGCAACAGAAGGAAAGCCCTCACGGACAGAACAGAGTAGAGAAGGGCAAAATGAGCTGTaGCACTCAGAAGGATCTGGG +
Preference number: 4 (lower is better)
Translates to: GGGGATEGKPSRTEQSREGQNEL*HSEGSG
Trigger: CCCAGATCCTTCTGAGTGGCACAGCTCATTTTGCCC...TTCTCTACTCTGTTCTGTCCGTGAGGGCTTTCCTTCTGTTGCCCCTCCCCCTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR GCA 90 bp AGGCTGAGAAGAGGGAGGAGCAGGGATCCCCAGAGTGAAATGGAAATAGAGGCGCTGCCAACTCTCATCTaGTTTGGCCTCCACCTGGTG +
Preference number: 4 (lower is better)
Translates to: RLRRGRSRDPQSEMEIEALPTLI*FGLHLV
Trigger: CACCAGGTGGAGGCCAAAGCAGATGAGAGTTGGCAG...CGCCTCTATTTCCATTTCACTCTGGGGATCCCTGCTCCTCCCTCTTCTCAGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR GCA 90 bp CACCCACCCCCTACCCTCATCCCAGGACATGACAATGCCACGCACACGCACACACAATCTCATCTGACATaGGTGTGTCTGTCACTGTGC +
Preference number: 4 (lower is better)
Translates to: HPPPTLIPGHDNATHTHTQSHLT*VCLSLC
Trigger: GCACAGTGACAGACACACGCATGTCAGATGAGATTG...TGTGTGCGTGTGCGTGGCATTGTCATGTCCTGGGATGAGGGTAGGGGGTGGGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR GCA 90 bp GGGGGAGGGGCAACAGAAGGAAAGCCCTCACGGACAGAACAGAGTAGAGAAGGACTGCTTCCGAGTCACTaGTGTCCTCTTCCTCTTGCT +
Preference number: 4 (lower is better)
Translates to: GGGATEGKPSRTEQSREGLLPSH*CPLPLA
Trigger: AGCAAGAGGAAGAGGACAGCAGTGACTCGGAAGCAG...TCCTTCTCTACTCTGTTCTGTCCGTGAGGGCTTTCCTTCTGTTGCCCCTCCCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR GCA 90 bp CCCCCTACCCTCATCCCAGGACATGACAATGCCACGCACACGCACACATACAAGCTGCTTCCGAGTCACTaGTGTCCTCTTCCTCTTGCT +
Preference number: 4 (lower is better)
Translates to: PPTLIPGHDNATHTHTYKLLPSH*CPLPLA
Trigger: AGCAAGAGGAAGAGGACAGCAGTGACTCGGAAGCAG...CTTGTATGTGTGCGTGTGCGTGGCATTGTCATGTCCTGGGATGAGGGTAGGGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR GCA 90 bp AGGAGGGCAACTCCTGTGGGGCCTCCTGGGGTTCTGAGATTGAAGGACTGCTCCAGCCACCTAGCAGCCTaGTCACACAGTAGGATTAAT +
Preference number: 4 (lower is better)
Translates to: RRATPVGPPGVLRLKDCSSHLAA*SHSRIN
Trigger: ATTAATCCTACTGTGTGAGCAGGCTGCTAGGTGGCT...GGAGCAGTCCTTCAATCTCAGAACCCCAGGAGGCCCCACAGGAGTTGCCCTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238807.2
CDS-3UTR CCA 90 bp ACCCACCCCCTACCCTCATCCCAGGACATGACAATGCCACGCACACGCACACATCCTTGTGAGACTTCTTaGTATTGGTGCCATCGGGTC +
Preference number: 4 (lower is better)
Translates to: THPLPSSQDMTMPRTRTHPCETS*YWCHRV
Trigger: GACCCGATGGCACCAATACCAAGAAGTCTCACAAGG...ATGTGTGCGTGTGCGTGGCATTGTCATGTCCTGGGATGAGGGTAGGGGGTGGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CCA 90 bp CCCCACAACCCAGGCAAAGCAGGCCATGGAGAAAGGAATAGAGACAGTAAGACCCAGCCCTTGGCCACATaGCTGGTCTGCAGCTCTATG +
Preference number: 4 (lower is better)
Translates to: PHNPGKAGHGERNRDSKTQPLAT*LVCSSM
Trigger: CATAGAGCTGCAGACCAGCCATGTGGCCAAGGGCTG...GGTCTTACTGTCTCTATTCCTTTCTCCATGGCCTGCTTTGCCTGGGTTGTGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CCA 90 bp GGGGGAGGGGCAACAGAAGGAAAGCCCTCACGGACAGAACAGAGTAGAGAAGGAAAGGACAGGGTAAAGTaGTCGCTGAAGCCATCCTGC +
Preference number: 4 (lower is better)
Translates to: GGGATEGKPSRTEQSREGKDRVK*SLKPSC
Trigger: GCAGGATGGCTTCAGCGACCACTTTACCCTGTCCTT...TCCTTCTCTACTCTGTTCTGTCCGTGAGGGCTTTCCTTCTGTTGCCCCTCCCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CCA 90 bp CCACCCCCTACCCTCATCCCAGGACATGACAATGCCACGCACACGCACACATACACATGCTGCAGGGCATaGTTGAAGGTCTCCACATCA +
Preference number: 4 (lower is better)
Translates to: PPPTLIPGHDNATHTHTYTCCRA*LKVSTS
Trigger: TGATGTGGAGACCTTCAACCATGCCCTGCAGCATGT...GTATGTGTGCGTGTGCGTGGCATTGTCATGTCCTGGGATGAGGGTAGGGGGTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CCA 90 bp GGAGGGGGAGGGGCAACAGAAGGAAAGCCCTCACGGACAGAACAGAGTAGAGAACCTCCACTTCAGGGATaGAGACACAGGACTCTTCAC +
Preference number: 4 (lower is better)
Translates to: GGGGATEGKPSRTEQSREPPLQG*RHRTLH
Trigger: GTGAAGAGTCCTGTGTCTCCATCCCTGAAGTGGAGG...TTCTCTACTCTGTTCTGTCCGTGAGGGCTTTCCTTCTGTTGCCCCTCCCCCTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CCA 90 bp AAGGCTGTGAGCTGCACACAGAAACACAGGAGCTGCGCTCACGACAACATTGAAACCATGGAGTTCCGGTaGGAGCTGGCCAGGCTGTGT +
Preference number: 4 (lower is better)
Translates to: KAVSCTQKHRSCAHDNIETMEFR*ELARLC
Trigger: ACACAGCCTGGCCAGCTCCCACCGGAACTCCATGGT...TTCAATGTTGTCGTGAGCGCAGCTCCTGTGTTTCTGTGTGCAGCTCACAGCCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CCA 90 bp AGGCTGAAGGAGGAGGGCAACTCCTGTGGGGCCTCCTGGGGTTCTGAGATTGAACCAATGAAGAACGAGTaGGCACACAGCTGGACAAAC +
Preference number: 4 (lower is better)
Translates to: RLKEEGNSCGASWGSEIEPMKNE*AHSWTN
Trigger: GTTTGTCCAGCTGTGTGCCCACTCGTTCTTCATTGG...TTCAATCTCAGAACCCCAGGAGGCCCCACAGGAGTTGCCCTCCTCCTTCAGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238807.2
CDS-3UTR TCA 90 bp ACCCACCCCCTACCCTCATCCCAGGACATGACAATGCCACGCACACGCACACATCATACGCTGTCACTGTaGACTTGTAGAGTTTCTCGC +
Preference number: 4 (lower is better)
Translates to: THPLPSSQDMTMPRTRTHHTLSL*TCRVSR
Trigger: GCGAGAAACTCTACAAGTTCACAGTGACAGCGTATG...ATGTGTGCGTGTGCGTGGCATTGTCATGTCCTGGGATGAGGGTAGGGGGTGGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR TCA 90 bp CAGCAGGCTCCCATCAATTGCATTCCCACCTCAACCAAGGCTGTTGACATCCCCGCTTCCAGAGGAACTTaGCAGGACGAGCACTCTCAA +
Preference number: 4 (lower is better)
Translates to: QQAPINCIPTSTKAVDIPASRGT*QDEHSQ
Trigger: TTGAGAGTGCTCGTCCTGTCAAGTTCCTCTGGAAGC...GGGGATGTCAACAGCCTTGGTTGAGGTGGGAATGCAATTGATGGGAGCCTGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR TCA 90 bp AGGACACAGCAGCAGGCTCCCATCAATTGCATTCCCACCTCAACCAAGGCTGTTTTGGCCTCCACCTGGTaGGAAATGGAGCAGGTGATC +
Preference number: 4 (lower is better)
Translates to: RTQQQAPINCIPTSTKAVLASTW*EMEQVI
Trigger: GATCACCTGCTCCATTTCTCACCAGGTGGAGGCCAA...AACAGCCTTGGTTGAGGTGGGAATGCAATTGATGGGAGCCTGCTGCTGTGTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR TCA 90 bp AACCCAGGCAAAGCAGGCCATGGAGAAAGGAATAGAGACAGTAAGACCTTGGTACCTGAGACGCGGCGATaGAGGGAGTGGATCCGAACG +
Preference number: 4 (lower is better)
Translates to: NPGKAGHGERNRDSKTLVPETRR*REWIRT
Trigger: CGTTCGGATCCACTCCCTTCATCGCCGCGTCTCAGG...TACCAAGGTCTTACTGTCTCTATTCCTTTCTCCATGGCCTGCTTTGCCTGGGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR GCA 90 bp TTCCCACCTCAACCAAGGCTGTTGACATCCCCCTCCCTAATACAGTGCATGGCTGGACCTTCATGCCTTTaGCCAGGCTCTCGAAATCCC +
Preference number: 4 (lower is better)
Translates to: FPPQPRLLTSPSLIQCMAGPSCL*PGSRNP
Trigger: GGGATTTCGAGAGCCTGGGCAAAGGCATGAAGGTCC...AGCCATGCACTGTATTAGGGAGGGGGATGTCAACAGCCTTGGTTGAGGTGGGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR GCA 90 bp TTCCCACCTCAACCAAGGCTGTTGACATCCCCCTCCCTAATACAGTGCATGGCTTCACGTGGACCTTCATaGCTTTGCCCAGGCTCTCGA +
Preference number: 4 (lower is better)
Translates to: FPPQPRLLTSPSLIQCMASRGPS*LCPGSR
Trigger: TCGAGAGCCTGGGCAAAGGCATGAAGGTCCACGTGA...AGCCATGCACTGTATTAGGGAGGGGGATGTCAACAGCCTTGGTTGAGGTGGGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR GCA 90 bp GAGGGGCAACAGAAGGAAAGCCCTCACGGACAGAACAGAGTAGAGAAGGACACACTGCCAACTCTCATCTaGTTTGGCCTCCACCTGGTG +
Preference number: 4 (lower is better)
Translates to: EGQQKESPHGQNRVEKDTLPTLI*FGLHLV
Trigger: CACCAGGTGGAGGCCAAAGCAGATGAGAGTTGGCAG...TGTGTCCTTCTCTACTCTGTTCTGTCCGTGAGGGCTTTCCTTCTGTTGCCCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR GCA 90 bp AGGCTGAAGGAGGAGGGCAACTCCTGTGGGGCCTCCTGGGGTTCTGAGATTGAACAATCTCATCTGACATaGGTGTGTCTGTCACTGTGC +
Preference number: 4 (lower is better)
Translates to: RLKEEGNSCGASWGSEIEQSHLT*VCLSLC
Trigger: GCACAGTGACAGACACACGCATGTCAGATGAGATTG...TTCAATCTCAGAACCCCAGGAGGCCCCACAGGAGTTGCCCTCCTCCTTCAGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CCA 90 bp AGGACACAGCAGCAGGCTCCCATCAATTGCATTCCCACCTCAACCAAGGCTGTTAAAGTGTGTTCCTTCTaGGCCTCACAGTCCACGGGC +
Preference number: 4 (lower is better)
Translates to: RTQQQAPINCIPTSTKAVKVCSF*ASQSTG
Trigger: GCCCGTGGACTGTGAGGCCCAGAAGGAACACACTTT...AACAGCCTTGGTTGAGGTGGGAATGCAATTGATGGGAGCCTGCTGCTGTGTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CCA 90 bp GAGGGGCAACAGAAGGAAAGCCCTCACGGACAGAACAGAGTAGAGAAGGACACAGAGACTTCTTGGTATTaGTGCCATCGGGTCCCTCGC +
Preference number: 4 (lower is better)
Translates to: EGQQKESPHGQNRVEKDTETSWY*CHRVPR
Trigger: GCGAGGGACCCGATGGCACCAATACCAAGAAGTCTC...TGTGTCCTTCTCTACTCTGTTCTGTCCGTGAGGGCTTTCCTTCTGTTGCCCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CCA 90 bp CCCCCTACCCTCATCCCAGGACATGACAATGCCACGCACACGCACACATACAAGCCTTGTGAGACTTCTTaGTATTGGTGCCATCGGGTC +
Preference number: 4 (lower is better)
Translates to: PPTLIPGHDNATHTHTYKPCETS*YWCHRV
Trigger: GACCCGATGGCACCAATACCAAGAAGTCTCACAAGG...CTTGTATGTGTGCGTGTGCGTGGCATTGTCATGTCCTGGGATGAGGGTAGGGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CCA 90 bp AATTGCATTCCCACCTCAACCAAGGCTGTTGACATCCCCCTCCCTAATACAGTGCTGTCCAGTTGGCATTaGGGCCGGGCATGGGCAACA +
Preference number: 4 (lower is better)
Translates to: NCIPTSTKAVDIPLPNTVLSSWH*GRAWAT
Trigger: TGTTGCCCATGCCCGGCCCCAATGCCAACTGGACAG...CACTGTATTAGGGAGGGGGATGTCAACAGCCTTGGTTGAGGTGGGAATGCAATT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CCA 90 bp GAGGGGCAACAGAAGGAAAGCCCTCACGGACAGAACAGAGTAGAGAAGGACACAAGGTTCCCTCCTGGGTaGGTGGATGAGACCATTGTC +
Preference number: 4 (lower is better)
Translates to: EGQQKESPHGQNRVEKDTRFPPG*VDETIV
Trigger: GACAATGGTCTCATCCACCCACCCAGGAGGGAACCT...TGTGTCCTTCTCTACTCTGTTCTGTCCGTGAGGGCTTTCCTTCTGTTGCCCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CCA 90 bp AGGCTGAAGGAGGAGGGCAACTCCTGTGGGGCCTCCTGGGGTTCTGAGATTGAAAAAGCCGGAATTTCCTaGCATAAAGGGCAGCTCCAT +
Preference number: 4 (lower is better)
Translates to: RLKEEGNSCGASWGSEIEKAGIS*HKGQLH
Trigger: ATGGAGCTGCCCTTTATGCCAGGAAATTCCGGCTTT...TTCAATCTCAGAACCCCAGGAGGCCCCACAGGAGTTGCCCTCCTCCTTCAGCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR TCA 90 bp GGAGGGGGAGGGGCAACAGAAGGAAAGCCCTCACGGACAGAACAGAGTAGAGAATGTTGTCATTCTCCATaGCAATGCCCTGGTACTCTG +
Preference number: 4 (lower is better)
Translates to: GGGGATEGKPSRTEQSRECCHSP*QCPGTL
Trigger: CAGAGTACCAGGGCATTGTCATGGAGAATGACAACA...TTCTCTACTCTGTTCTGTCCGTGAGGGCTTTCCTTCTGTTGCCCCTCCCCCTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000008297.5
CDS-3UTR TCA 90 bp AGGCTGAGAAGAGGGAGGAGCAGGGATCCCCAGAGTGAAATGGAAATAGAGGCGTGCACGGTTGCCTTGTaGGACTTCTTGGTATTGGTG +
Preference number: 4 (lower is better)
Translates to: RLRRGRSRDPQSEMEIEACTVAL*DFLVLV
Trigger: CACCAATACCAAGAAGTCTCACAAGGCAACCGTGCA...CGCCTCTATTTCCATTTCACTCTGGGGATCCCTGCTCCTCCCTCTTCTCAGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR TCA 90 bp CATGGAGAAAGGAATAGAGACAGTAAGACCTTGGTACTGCTCAGGCAGGAGAGGGACCATTGTCGTGGATaGGAGCCGGGTCGAAGGAGA +
Preference number: 4 (lower is better)
Translates to: HGERNRDSKTLVLLRQERDHCRG*EPGRRR
Trigger: TCTCCTTCGACCCGGCTCTCATCCACGACAATGGTC...CCTCTCCTGCCTGAGCAGTACCAAGGTCTTACTGTCTCTATTCCTTTCTCCATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR TCA 90 bp AACCCAGGCAAAGCAGGCCATGGAGAAAGGAATAGAGACAGTAAGACCTTGGTAAGCAGGCCCCAATCATaGGTGCAGGTTCCCTCCTGG +
Preference number: 4 (lower is better)
Translates to: NPGKAGHGERNRDSKTLVSRPQS*VQVPSW
Trigger: CCAGGAGGGAACCTGCACTCATGATTGGGGCCTGCT...TACCAAGGTCTTACTGTCTCTATTCCTTTCTCCATGGCCTGCTTTGCCTGGGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR TCA 90 bp TGTGGGGCCTCCTGGGGTTCTGAGATTGAAGGACTGCTCCAAATGAAGAGCTCTGACTCTCACAGGCAGTaGGAGACAGAAGGGCATATG +
Preference number: 4 (lower is better)
Translates to: CGASWGSEIEGLLQMKSSDSHRQ*ETEGHM
Trigger: CATATGCCCTTCTGTCTCTCACTGCCTGTGAGAGTC...AGAGCTCTTCATTTGGAGCAGTCCTTCAATCTCAGAACCCCAGGAGGCCCCACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000238807.2
ENSMUST00000239139.2
CDS-3UTR GCA 90 bp GGAGGGGGAGGGGCAACAGAAGGAAAGCCCTCACGGACAGAACAGAGTAGAGAATCGATCCATGGCTTGTaGTTGTTGGCTTTGTTGCCA +
Preference number: 4 (lower is better)
Translates to: GGGGATEGKPSRTEQSRESIHGL*LLALLP
Trigger: TGGCAACAAAGCCAACAAGCACAAGCCATGGATCGA...TTCTCTACTCTGTTCTGTCCGTGAGGGCTTTCCTTCTGTTGCCCCTCCCCCTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000008297.5
CDS-3UTR GCA 90 bp CCCACAACCCAGGCAAAGCAGGCCATGGAGAAAGGAATAGAGACAGTAAGACCTCACCTCAGCATCATCTaGCGCTCGCTTCTTCCCACA +
Preference number: 4 (lower is better)
Translates to: PTTQAKQAMEKGIETVRPHLSII*RSLLPT
Trigger: TGTGGGAAGAAGCGAGCGGCAGATGATGCTGAGGTG...AGGTCTTACTGTCTCTATTCCTTTCTCCATGGCCTGCTTTGCCTGGGTTGTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR GCA 90 bp CCCACAACCCAGGCAAAGCAGGCCATGGAGAAAGGAATAGAGACAGTAAGACCTCTTGCCAGCTGGGTTTaGAGGTGGGCTTCACCTGAA +
Preference number: 4 (lower is better)
Translates to: PTTQAKQAMEKGIETVRPLASWV*RWASPE
Trigger: TTCAGGTGAAGCCCACCTGCAAACCCAGCTGGCAAG...AGGTCTTACTGTCTCTATTCCTTTCTCCATGGCCTGCTTTGCCTGGGTTGTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR GCA 90 bp CCCACAACCCAGGCAAAGCAGGCCATGGAGAAAGGAATAGAGACAGTAAGACCTAGGTCTCCAGACGGATaGCAGGGAACAAAGCCAAGC +
Preference number: 4 (lower is better)
Translates to: PTTQAKQAMEKGIETVRPRSPDG*QGTKPS
Trigger: GCTTGGCTTTGTTCCCTGGCATCCGTCTGGAGACCT...AGGTCTTACTGTCTCTATTCCTTTCTCCATGGCCTGCTTTGCCTGGGTTGTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR GCA 90 bp AAGGCTGTGAGCTGCACACAGAAACACAGGAGCTGCGCTCACGACAACATTGAACCACCCAGGGGAACTTaGACAGCTTGTGTGCCATTG +
Preference number: 4 (lower is better)
Translates to: KAVSCTQKHRSCAHDNIEPPRGT*TACVPL
Trigger: CAATGGCACACAAGCTGTGCAAGTTCCCCTGGGTGG...TTCAATGTTGTCGTGAGCGCAGCTCCTGTGTTTCTGTGTGCAGCTCACAGCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CCA 90 bp AGGCTGAGAAGAGGGAGGAGCAGGGATCCCCAGAGTGAAATGGAAATAGAGGCGATCCAAGGCAAAGAGTaGTGGGTTCAACAGGACCGT +
Preference number: 4 (lower is better)
Translates to: RLRRGRSRDPQSEMEIEAIQGKE*WVQQDR
Trigger: ACGGTCCTGTTGAACCCACCACTCTTTGCCTTGGAT...CGCCTCTATTTCCATTTCACTCTGGGGATCCCTGCTCCTCCCTCTTCTCAGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CCA 90 bp AGGCTGAGAAGAGGGAGGAGCAGGGATCCCCAGAGTGAAATGGAAATAGAGGCGTCTGCAGCTCTATGGTaGCCTGAATGTTCCACAGTG +
Preference number: 4 (lower is better)
Translates to: RLRRGRSRDPQSEMEIEASAALW*PECSTV
Trigger: CACTGTGGAACATTCAGGCCACCATAGAGCTGCAGA...CGCCTCTATTTCCATTTCACTCTGGGGATCCCTGCTCCTCCCTCTTCTCAGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CCA 90 bp CAGCAGGCTCCCATCAATTGCATTCCCACCTCAACCAAGGCTGTTGACATCCCCTCTGCAGCTCTATGGTaGCCTGAATGTTCCACAGTG +
Preference number: 4 (lower is better)
Translates to: QQAPINCIPTSTKAVDIPSAALW*PECSTV
Trigger: CACTGTGGAACATTCAGGCCACCATAGAGCTGCAGA...GGGGATGTCAACAGCCTTGGTTGAGGTGGGAATGCAATTGATGGGAGCCTGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CCA 90 bp TGTGGGGCCTCCTGGGGTTCTGAGATTGAAGGACTGCTCCAAATGAAGAGCTCTAAGGACAGGGTAAAGTaGTCGCTGAAGCCATCCTGC +
Preference number: 4 (lower is better)
Translates to: CGASWGSEIEGLLQMKSSKDRVK*SLKPSC
Trigger: GCAGGATGGCTTCAGCGACCACTTTACCCTGTCCTT...AGAGCTCTTCATTTGGAGCAGTCCTTCAATCTCAGAACCCCAGGAGGCCCCACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CCA 90 bp GGGGGAGGGGCAACAGAAGGAAAGCCCTCACGGACAGAACAGAGTAGAGAAGGACTGTGTTACACACAATaGTCTCCTCCTCCTTCTTCC +
Preference number: 4 (lower is better)
Translates to: GGGATEGKPSRTEQSREGLCYTQ*SPPPSS
Trigger: GGAAGAAGGAGGAGGAGACCATTGTGTGTAACACAG...TCCTTCTCTACTCTGTTCTGTCCGTGAGGGCTTTCCTTCTGTTGCCCCTCCCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR TCA 90 bp AATTGCATTCCCACCTCAACCAAGGCTGTTGACATCCCCCTCCCTAATACAGTGCGTCAGTATACAGTGTaGCCGTGGGGAACTCCAGGT +
Preference number: 4 (lower is better)
Translates to: NCIPTSTKAVDIPLPNTVRQYTV*PWGTPG
Trigger: ACCTGGAGTTCCCCACGGTCACACTGTATACTGACG...CACTGTATTAGGGAGGGGGATGTCAACAGCCTTGGTTGAGGTGGGAATGCAATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR TCA 90 bp TTTCTAGTTGTTTTATTTGAAAACCCTAGGGTGCGGCCCTCCTTTACCACACCCCATAGAGGCACTCGATaGCCTCACGGCTCTCCAGGC +
Preference number: 4 (lower is better)
Translates to: FLVVLFENPRVRPSFTTPHRGTR*PHGSPG
Trigger: GCCTGGAGAGCCGTGAGGTCATCGAGTGCCTCTATG...GGGTGTGGTAAAGGAGGGCCGCACCCTAGGGTTTTCAAATAAAACAACTAGAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR TCA 90 bp CAGCAGGCTCCCATCAATTGCATTCCCACCTCAACCAAGGCTGTTGACATCCCCGTGTACAATCTCATCTaGCATGCGTGTGTCTGTCAC +
Preference number: 4 (lower is better)
Translates to: QQAPINCIPTSTKAVDIPVYNLI*HACVCH
Trigger: GTGACAGACACACGCATGTCAGATGAGATTGTACAC...GGGGATGTCAACAGCCTTGGTTGAGGTGGGAATGCAATTGATGGGAGCCTGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR GCA 90 bp CCCACAACCCAGGCAAAGCAGGCCATGGAGAAAGGAATAGAGACAGTAAGACCTAATGCCCTGGTACTCTaGCTCGATCCATGGCTTGTG +
Preference number: 4 (lower is better)
Translates to: PTTQAKQAMEKGIETVRPNALVL*LDPWLV
Trigger: CACAAGCCATGGATCGAGGCAGAGTACCAGGGCATT...AGGTCTTACTGTCTCTATTCCTTTCTCCATGGCCTGCTTTGCCTGGGTTGTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008297.5
CDS-3UTR GCA 90 bp AATTGCATTCCCACCTCAACCAAGGCTGTTGACATCCCCCTCCCTAATACAGTGCTTGCCAGCTGGGTTTaGAGGTGGGCTTCACCTGAA +
Preference number: 4 (lower is better)
Translates to: NCIPTSTKAVDIPLPNTVLASWV*RWASPE
Trigger: TTCAGGTGAAGCCCACCTGCAAACCCAGCTGGCAAG...CACTGTATTAGGGAGGGGGATGTCAACAGCCTTGGTTGAGGTGGGAATGCAATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR GCA 90 bp AATTGCATTCCCACCTCAACCAAGGCTGTTGACATCCCCCTCCCTAATACAGTGAGGTCTCCAGACGGATaGCAGGGAACAAAGCCAAGC +
Preference number: 4 (lower is better)
Translates to: NCIPTSTKAVDIPLPNTVRSPDG*QGTKPS
Trigger: GCTTGGCTTTGTTCCCTGGCATCCGTCTGGAGACCT...CACTGTATTAGGGAGGGGGATGTCAACAGCCTTGGTTGAGGTGGGAATGCAATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR GCA 90 bp AAGGCTGTGAGCTGCACACAGAAACACAGGAGCTGCGCTCACGACAACATTGAAACCCGGTTCATGCTATaGAGGACGTTGACCTCCACA +
Preference number: 4 (lower is better)
Translates to: KAVSCTQKHRSCAHDNIETRFML*RTLTST
Trigger: TGTGGAGGTCAACGTCCTGCATAGCATGAACCGGGT...TTCAATGTTGTCGTGAGCGCAGCTCCTGTGTTTCTGTGTGCAGCTCACAGCCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CCA 90 bp TGTGGGGCCTCCTGGGGTTCTGAGATTGAAGGACTGCTCCAAATGAAGAGCTCTCTCTGCCTCGATCCATaGCTTGTGCTTGTTGGCTTT +
Preference number: 4 (lower is better)
Translates to: CGASWGSEIEGLLQMKSSLCLDP*LVLVGF
Trigger: AAAGCCAACAAGCACAAGCCATGGATCGAGGCAGAG...AGAGCTCTTCATTTGGAGCAGTCCTTCAATCTCAGAACCCCAGGAGGCCCCACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000008297.5
CDS-3UTR CCA 90 bp AGGACACAGCAGCAGGCTCCCATCAATTGCATTCCCACCTCAACCAAGGCTGTTTCCATGACAATGCCCTaGTACTCTGCCTCGATCCAT +
Preference number: 4 (lower is better)
Translates to: RTQQQAPINCIPTSTKAVSMTMP*YSASIH
Trigger: ATGGATCGAGGCAGAGTACCAGGGCATTGTCATGGA...AACAGCCTTGGTTGAGGTGGGAATGCAATTGATGGGAGCCTGCTGCTGTGTCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008297.5
CDS-3UTR CCA 90 bp CCCCACAACCCAGGCAAAGCAGGCCATGGAGAAAGGAATAGAGACAGTAAGACCCAAGGCAAAGAGTGGTaGGTTCAACAGGACCGTGTT +
Preference number: 4 (lower is better)
Translates to: PHNPGKAGHGERNRDSKTQGKEW*VQQDRV
Trigger: AACACGGTCCTGTTGAACCCACCACTCTTTGCCTTG...GGTCTTACTGTCTCTATTCCTTTCTCCATGGCCTGCTTTGCCTGGGTTGTGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CCA 90 bp GAGGGGCAACAGAAGGAAAGCCCTCACGGACAGAACAGAGTAGAGAAGGACACACAAGGCAAAGAGTGGTaGGTTCAACAGGACCGTGTT +
Preference number: 4 (lower is better)
Translates to: EGQQKESPHGQNRVEKDTQGKEW*VQQDRV
Trigger: AACACGGTCCTGTTGAACCCACCACTCTTTGCCTTG...TGTGTCCTTCTCTACTCTGTTCTGTCCGTGAGGGCTTTCCTTCTGTTGCCCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR TCA 90 bp CATGGAGAAAGGAATAGAGACAGTAAGACCTTGGTACTGCTCAGGCAGGAGAGGTGCCATCATTGTCAATaGGGAAAGGGGTGTTGGGCG +
Preference number: 4 (lower is better)
Translates to: HGERNRDSKTLVLLRQERCHHCQ*GKGCWA
Trigger: CGCCCAACACCCCTTTCCTCATTGACAATGATGGCA...CCTCTCCTGCCTGAGCAGTACCAAGGTCTTACTGTCTCTATTCCTTTCTCCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR GCA 90 bp CATGGAGAAAGGAATAGAGACAGTAAGACCTTGGTACTGCTCAGGCAGGAGAGGCTTTTGTTCCAGCCTTaGCAGCTGGGTTTGCAGGTG +
Preference number: 4 (lower is better)
Translates to: HGERNRDSKTLVLLRQERLLFQP*QLGLQV
Trigger: CACCTGCAAACCCAGCTGGCAAGGCTGGAACAAAAG...CCTCTCCTGCCTGAGCAGTACCAAGGTCTTACTGTCTCTATTCCTTTCTCCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR GCA 90 bp AGGACACAGCAGCAGGCTCCCATCAATTGCATTCCCACCTCAACCAAGGCTGTTAGAGAAAGGCAATTCTaGAGCCATGGACAGTCAGTG +
Preference number: 4 (lower is better)
Translates to: RTQQQAPINCIPTSTKAVRERQF*SHGQSV
Trigger: CACTGACTGTCCATGGCTGCAGAATTGCCTTTCTCT...AACAGCCTTGGTTGAGGTGGGAATGCAATTGATGGGAGCCTGCTGCTGTGTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR GCA 90 bp CATGGAGAAAGGAATAGAGACAGTAAGACCTTGGTACTGCTCAGGCAGGAGAGGGGGCAAAATGAGCTGTaGCACTCAGAAGGATCTGGG +
Preference number: 4 (lower is better)
Translates to: HGERNRDSKTLVLLRQERGQNEL*HSEGSG
Trigger: CCCAGATCCTTCTGAGTGGCACAGCTCATTTTGCCC...CCTCTCCTGCCTGAGCAGTACCAAGGTCTTACTGTCTCTATTCCTTTCTCCATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CCA 90 bp CATGGAGAAAGGAATAGAGACAGTAAGACCTTGGTACTGCTCAGGCAGGAGAGGCCTCCACTTCAGGGATaGAGACACAGGACTCTTCAC +
Preference number: 4 (lower is better)
Translates to: HGERNRDSKTLVLLRQERPPLQG*RHRTLH
Trigger: GTGAAGAGTCCTGTGTCTCCATCCCTGAAGTGGAGG...CCTCTCCTGCCTGAGCAGTACCAAGGTCTTACTGTCTCTATTCCTTTCTCCATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CCA 90 bp AATTGCATTCCCACCTCAACCAAGGCTGTTGACATCCCCCTCCCTAATACAGTGCTCAAAGTCCACAGCTaGGCGGGCAAAATGAGCTGT +
Preference number: 4 (lower is better)
Translates to: NCIPTSTKAVDIPLPNTVLKVHS*AGKMSC
Trigger: ACAGCTCATTTTGCCCGCCCAGCTGTGGACTTTGAG...CACTGTATTAGGGAGGGGGATGTCAACAGCCTTGGTTGAGGTGGGAATGCAATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR TCA 90 bp AATTGCATTCCCACCTCAACCAAGGCTGTTGACATCCCCCTCCCTAATACAGTGTGCACGGTTGCCTTGTaGGACTTCTTGGTATTGGTG +
Preference number: 4 (lower is better)
Translates to: NCIPTSTKAVDIPLPNTVCTVAL*DFLVLV
Trigger: CACCAATACCAAGAAGTCTCACAAGGCAACCGTGCA...CACTGTATTAGGGAGGGGGATGTCAACAGCCTTGGTTGAGGTGGGAATGCAATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CCA 90 bp TTTCTAGTTGTTTTATTTGAAAACCCTAGGGTGCGGCCCTCCTTTACCACACCCAAAGTGTGTTCCTTCTaGGCCTCACAGTCCACGGGC +
Preference number: 4 (lower is better)
Translates to: FLVVLFENPRVRPSFTTPKVCSF*ASQSTG
Trigger: GCCCGTGGACTGTGAGGCCCAGAAGGAACACACTTT...GGGTGTGGTAAAGGAGGGCCGCACCCTAGGGTTTTCAAATAAAACAACTAGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR TCA 90 bp AACCCAGGCAAAGCAGGCCATGGAGAAAGGAATAGAGACAGTAAGACCTTGGTATTGCCAGAGCTGATTTaGAGCAGAGAGGCCAGCAAA +
Preference number: 4 (lower is better)
Translates to: NPGKAGHGERNRDSKTLVLPELI*SREASK
Trigger: TTTGCTGGCCTCTCTGCTTCAAATCAGCTCTGGCAA...TACCAAGGTCTTACTGTCTCTATTCCTTTCTCCATGGCCTGCTTTGCCTGGGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008297.5
CDS-3UTR TCA 90 bp CATGGAGAAAGGAATAGAGACAGTAAGACCTTGGTACTGCTCAGGCAGGAGAGGCATACGCTGTCACTGTaGACTTGTAGAGTTTCTCGC +
Preference number: 4 (lower is better)
Translates to: HGERNRDSKTLVLLRQERHTLSL*TCRVSR
Trigger: GCGAGAAACTCTACAAGTTCACAGTGACAGCGTATG...CCTCTCCTGCCTGAGCAGTACCAAGGTCTTACTGTCTCTATTCCTTTCTCCATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR TCA 90 bp TTTCTAGTTGTTTTATTTGAAAACCCTAGGGTGCGGCCCTCCTTTACCACACCCGCTTCCAGAGGAACTTaGCAGGACGAGCACTCTCAA +
Preference number: 4 (lower is better)
Translates to: FLVVLFENPRVRPSFTTPASRGT*QDEHSQ
Trigger: TTGAGAGTGCTCGTCCTGTCAAGTTCCTCTGGAAGC...GGGTGTGGTAAAGGAGGGCCGCACCCTAGGGTTTTCAAATAAAACAACTAGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR TCA 90 bp TTTCTAGTTGTTTTATTTGAAAACCCTAGGGTGCGGCCCTCCTTTACCACACCCGACTCTCACAGGCAGTaGGAGACAGAAGGGCATATG +
Preference number: 4 (lower is better)
Translates to: FLVVLFENPRVRPSFTTPDSHRQ*ETEGHM
Trigger: CATATGCCCTTCTGTCTCTCACTGCCTGTGAGAGTC...GGGTGTGGTAAAGGAGGGCCGCACCCTAGGGTTTTCAAATAAAACAACTAGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000239139.2
CDS-3UTR GCA 90 bp AACCCAGGCAAAGCAGGCCATGGAGAAAGGAATAGAGACAGTAAGACCTTGGTATCATCATCACACACCTaGTCCAGCTTCCAGAGGAAC +
Preference number: 4 (lower is better)
Translates to: NPGKAGHGERNRDSKTLVSSSHT*SSFQRN
Trigger: GTTCCTCTGGAAGCTGGAGCAGGTGTGTGATGATGA...TACCAAGGTCTTACTGTCTCTATTCCTTTCTCCATGGCCTGCTTTGCCTGGGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CCA 90 bp AACCCAGGCAAAGCAGGCCATGGAGAAAGGAATAGAGACAGTAAGACCTTGGTAACATGCTGCAGGGCATaGTTGAAGGTCTCCACATCA +
Preference number: 4 (lower is better)
Translates to: NPGKAGHGERNRDSKTLVTCCRA*LKVSTS
Trigger: TGATGTGGAGACCTTCAACCATGCCCTGCAGCATGT...TACCAAGGTCTTACTGTCTCTATTCCTTTCTCCATGGCCTGCTTTGCCTGGGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS TCA 90 bp AGGTTCCTGGTCCTGCAGGGCTGCTGTTCCTGCGGAGTCTCCCCCTaGGGTCTCCCTACTTCCACCGCTGCACTCCGGGGCCTCCCACCC +
Preference number: 5 (lower is better)
Translates to: RFLVLQGCCSCGVSP*GLPTSTAALRGLPP
Trigger: GGGTGGGAGGCCCCGGAGTGCAGCGGTGGAAGTAGGGAGACCTCAGGGGGAGACTCCGCAGGAACAGCAGCCCTGCAGGACCAGGAACCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000238807.2
ENSMUST00000239139.2
CDS-3UTR CAA 90 bp CTCTCCCAGGGCAGCCAGCTGGGGCAGACACCTCAGGAGTACACCAGGGGAAGGCCTTCACCCGTTGCCTaGTCCAGGATCACAGCCTCG +
Preference number: 5 (lower is better)
Translates to: LSQGSQLGQTPQEYTRGRPSPVA*SRITAS
Trigger: CGAGGCTGTGATCCTGGACAAGGCAACGGGTGAAGG...CCTTCCCCTGGTGTACTCCTGAGGTGTCTGCCCCAGCTGGCTGCCCTGGGAGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS TCA 90 bp AGTCGCAGCACTGGGGACCACTCGTCTGGGCTCACTCCTGTTCCGTaGCACCTCCCTTCTCCTTGTGGGCCTGAGGTTCCTGGTCCTGCA +
Preference number: 5 (lower is better)
Translates to: SRSTGDHSSGLTPVP*HLPSPCGPEVPGPA
Trigger: TGCAGGACCAGGAACCTCAGGCCCACAAGGAGAAGGGAGGTGTCACGGAACAGGAGTGAGCCCAGACGAGTGGTCCCCAGTGCTGCGACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238807.2
CDS-3UTR CAA 90 bp ACCCACCCCCTACCCTCATCCCAGGACATGACAATGCCACGCACACGCACACATGCTGTCCAGTTGGCATaGGGGCCGGGCATGGGCAAC +
Preference number: 5 (lower is better)
Translates to: THPLPSSQDMTMPRTRTHAVQLA*GPGMGN
Trigger: GTTGCCCATGCCCGGCCCCAATGCCAACTGGACAGC...ATGTGTGCGTGTGCGTGGCATTGTCATGTCCTGGGATGAGGGTAGGGGGTGGGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CAA 90 bp CTCTCCCAGGGCAGCCAGCTGGGGCAGACACCTCAGGAGTACACCAGGGGAAGGTCTTCACTAAAGCACTaGACAGCGGTGGTGAGGCGC +
Preference number: 5 (lower is better)
Translates to: LSQGSQLGQTPQEYTRGRSSLKH*TAVVRR
Trigger: GCGCCTCACCACCGCTGTCAAGTGCTTTAGTGAAGA...CCTTCCCCTGGTGTACTCCTGAGGTGTCTGCCCCAGCTGGCTGCCCTGGGAGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS GCA 90 bp CTCACAGTCCACGGGCTCCTTAGCCCGGATCAGCCCTTCACCCGTTaGCTTGTCCAGGATCACAGCCTCGAAGGGTACCCCAGATCCATG +
Preference number: 5 (lower is better)
Translates to: LTVHGLLSPDQPFTR*LVQDHSLEGYPRSM
Trigger: CATGGATCTGGGGTACCCTTCGAGGCTGTGATCCTGGACAAGGCAACGGGTGAAGGGCTGATCCGGGCTAAGGAGCCCGTGGACTGTGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
ENSMUST00000150774.3
CDS-3UTR CAA 90 bp GGGGGAGGGGCAACAGAAGGAAAGCCCTCACGGACAGAACAGAGTAGAGAAGGAGCTGTCCAGTTGGCATaGGGGCCGGGCATGGGCAAC +
Preference number: 5 (lower is better)
Translates to: GGGATEGKPSRTEQSREGAVQLA*GPGMGN
Trigger: GTTGCCCATGCCCGGCCCCAATGCCAACTGGACAGC...TCCTTCTCTACTCTGTTCTGTCCGTGAGGGCTTTCCTTCTGTTGCCCCTCCCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CAA 90 bp GCCACAGGTAGGCTACAGGGCAGCCAAAGCCATCCAGCCACTCTCCCAGGGCAGACCACCCAGGGGAACTaGCACAGCTTGTGTGCCATT +
Preference number: 5 (lower is better)
Translates to: ATGRLQGSQSHPATLPGQTTQGN*HSLCAI
Trigger: AATGGCACACAAGCTGTGCAAGTTCCCCTGGGTGGT...CTGCCCTGGGAGAGTGGCTGGATGGCTTTGGCTGCCCTGTAGCCTACCTGTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CAA 90 bp CAGGTAGGCTACAGGGCAGCCAAAGCCATCCAGCCACTCTCCCAGGGCAGCCAGTGGACCTTCATGCCTTaGCCCAGGCTCTCGAAATCC +
Preference number: 5 (lower is better)
Translates to: QVGYRAAKAIQPLSQGSQWTFMP*PRLSKS
Trigger: GGATTTCGAGAGCCTGGGCAAAGGCATGAAGGTCCA...CTGGCTGCCCTGGGAGAGTGGCTGGATGGCTTTGGCTGCCCTGTAGCCTACCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS TCA 90 bp TCTCAGGAGGAGGCTGGTGACCCCGGTGCAGGAACTGCTGTGAACTaGGCACATGACTGGGATGGGCCACCCGGTTCATGCTATGCAGGA +
Preference number: 5 (lower is better)
Translates to: SQEEAGDPGAGTAVN*AHDWDGPPGSCYAG
Trigger: TCCTGCATAGCATGAACCGGGTGGCCCATCCCAGTCATGTGCTCAGTTCACAGCAGTTCCTGCACCGGGGTCACCAGCCTCCTCCTGAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS TCA 90 bp AGCCATCTCAGGAGGAGGCTGGTGACCCCGGTGCAGGAACTGCTGTaGACTGAGCACATGACTGGGATGGGCCACCCGGTTCATGCTATG +
Preference number: 5 (lower is better)
Translates to: SHLRRRLVTPVQELL*TEHMTGMGHPVHAM
Trigger: CATAGCATGAACCGGGTGGCCCATCCCAGTCATGTGCTCAGTTCACAGCAGTTCCTGCACCGGGGTCACCAGCCTCCTCCTGAGATGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CAA 90 bp AGCCCAAGGCAGGGGCAGGCTGAAGGAGGAGGGCAACTCCTGTGGGGCCTCCTGGCATATTCAATCCTTTaGTTCCAGCCTTGCCAGCTG +
Preference number: 5 (lower is better)
Translates to: SPRQGQAEGGGQLLWGLLAYSIL*FQPCQL
Trigger: CAGCTGGCAAGGCTGGAACAAAAGGATTGAATATGC...CAGGAGGCCCCACAGGAGTTGCCCTCCTCCTTCAGCCTGCCCCTGCCTTGGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CAA 90 bp AGGACACAGCAGCAGGCTCCCATCAATTGCATTCCCACCTCAACCAAGGCTGTTAGCCCCGCTGTCCAGTaGGCATTGGGGCCGGGCATG +
Preference number: 5 (lower is better)
Translates to: RTQQQAPINCIPTSTKAVSPAVQ*ALGPGM
Trigger: CATGCCCGGCCCCAATGCCAACTGGACAGCGGGGCT...AACAGCCTTGGTTGAGGTGGGAATGCAATTGATGGGAGCCTGCTGCTGTGTCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CAA 90 bp GAGGGGCAACAGAAGGAAAGCCCTCACGGACAGAACAGAGTAGAGAAGGACACAAGCCCCGCTGTCCAGTaGGCATTGGGGCCGGGCATG +
Preference number: 5 (lower is better)
Translates to: EGQQKESPHGQNRVEKDTSPAVQ*ALGPGM
Trigger: CATGCCCGGCCCCAATGCCAACTGGACAGCGGGGCT...TGTGTCCTTCTCTACTCTGTTCTGTCCGTGAGGGCTTTCCTTCTGTTGCCCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CAA 90 bp CTCTCCCAGGGCAGCCAGCTGGGGCAGACACCTCAGGAGTACACCAGGGGAAGGGGGAACTTGCACAGCTaGTGTGCCATTGAACCAGTA +
Preference number: 5 (lower is better)
Translates to: LSQGSQLGQTPQEYTRGRGNLHS*CAIEPV
Trigger: TACTGGTTCAATGGCACACAAGCTGTGCAAGTTCCC...CCTTCCCCTGGTGTACTCCTGAGGTGTCTGCCCCAGCTGGCTGCCCTGGGAGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CAA 90 bp CTGCCACAGGTAGGCTACAGGGCAGCCAAAGCCATCCAGCCACTCTCCCAGGGCAGCTTCCAGAGGAACTaGACAGGACGAGCACTCTCA +
Preference number: 5 (lower is better)
Translates to: LPQVGYRAAKAIQPLSQGSFQRN*TGRALS
Trigger: TGAGAGTGCTCGTCCTGTCAAGTTCCTCTGGAAGCT...GCCCTGGGAGAGTGGCTGGATGGCTTTGGCTGCCCTGTAGCCTACCTGTGGCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CAA 90 bp CTCTCCCAGGGCAGCCAGCTGGGGCAGACACCTCAGGAGTACACCAGGGGAAGGTCCACAATGAATTCGTaGCTGGAGTATCGGCCGTTC +
Preference number: 5 (lower is better)
Translates to: LSQGSQLGQTPQEYTRGRSTMNS*LEYRPF
Trigger: GAACGGCCGATACTCCAGCAACGAATTCATTGTGGA...CCTTCCCCTGGTGTACTCCTGAGGTGTCTGCCCCAGCTGGCTGCCCTGGGAGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS CCA 90 bp TTGCTGGGAGTCACACTATGCTTCATCCAGAAGGACAGGGTAAAGTaGTCGCTGAAGCCATCCTGCGGCCCAGAGCCCAGCCCTGCTGGA +
Preference number: 5 (lower is better)
Translates to: LLGVTLCFIQKDRVK*SLKPSCGPEPSPAG
Trigger: TCCAGCAGGGCTGGGCTCTGGGCCGCAGGATGGCTTCAGCGACCACTTTACCCTGTCCTTCTGGATGAAGCATAGTGTGACTCCCAGCAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS CCA 90 bp GTCCAGCAGGCCCCAATCATGAGTGCAGGTTCCCTCCTGGGTGGGTaGATGAGACCATTGTCGTGGATGAGAGCCGGGTCGAAGGAGATA +
Preference number: 5 (lower is better)
Translates to: VQQAPIMSAGSLLGG*MRPLSWMRAGSKEI
Trigger: TATCTCCTTCGACCCGGCTCTCATCCACGACAATGGTCTCATCCACCCACCCAGGAGGGAACCTGCACTCATGATTGGGGCCTGCTGGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS CCA 90 bp TTCAGTCCAGCAGGCCCCAATCATGAGTGCAGGTTCCCTCCTGGGTaGGTGGATGAGACCATTGTCGTGGATGAGAGCCGGGTCGAAGGA +
Preference number: 5 (lower is better)
Translates to: FSPAGPNHECRFPPG*VDETIVVDESRVEG
Trigger: TCCTTCGACCCGGCTCTCATCCACGACAATGGTCTCATCCACCCACCCAGGAGGGAACCTGCACTCATGATTGGGGCCTGCTGGACTGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS CCA 90 bp ACCTGGACCCTGAGGGCCACAGAACGAGCAGCCATAAACACAACCTaGGCCCCATTCTGTGCTGCCAGAGAGAGCACTCGGAGAAGCACA +
Preference number: 5 (lower is better)
Translates to: TWTLRATERAAINTT*APFCAARESTRRST
Trigger: TGTGCTTCTCCGAGTGCTCTCTCTGGCAGCACAGAATGGGGCCCAGGTTGTGTTTATGGCTGCTCGTTCTGTGGCCCTCAGGGTCCAGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238807.2
CDS-3UTR CAA 90 bp GCCACAGGTAGGCTACAGGGCAGCCAAAGCCATCCAGCCACTCTCCCAGGGCAGATCCATGGCTTGTGCTaGTTGGCTTTGTTGCCAGAG +
Preference number: 5 (lower is better)
Translates to: ATGRLQGSQSHPATLPGQIHGLC*LALLPE
Trigger: CTCTGGCAACAAAGCCAACAAGCACAAGCCATGGAT...CTGCCCTGGGAGAGTGGCTGGATGGCTTTGGCTGCCCTGTAGCCTACCTGTGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008297.5
CDS-3UTR CAA 90 bp AGCCCAAGGCAGGGGCAGGCTGAAGGAGGAGGGCAACTCCTGTGGGGCCTCCTGTTCAACAGGACCGTGTaGTCATTCTCCATGACAATG +
Preference number: 5 (lower is better)
Translates to: SPRQGQAEGGGQLLWGLLFNRTV*SFSMTM
Trigger: CATTGTCATGGAGAATGACAACACGGTCCTGTTGAA...CAGGAGGCCCCACAGGAGTTGCCCTCCTCCTTCAGCCTGCCCCTGCCTTGGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000008297.5
CDS-3UTR CAA 90 bp CTGCCACAGGTAGGCTACAGGGCAGCCAAAGCCATCCAGCCACTCTCCCAGGGCTCCACAATGAATTCGTaGCTGGAGTATCGGCCGTTC +
Preference number: 5 (lower is better)
Translates to: LPQVGYRAAKAIQPLSQGSTMNS*LEYRPF
Trigger: GAACGGCCGATACTCCAGCAACGAATTCATTGTGGA...GCCCTGGGAGAGTGGCTGGATGGCTTTGGCTGCCCTGTAGCCTACCTGTGGCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CAA 90 bp GAGGGGCAACAGAAGGAAAGCCCTCACGGACAGAACAGAGTAGAGAAGGACACAGCTGTCCTCTTCCTCTaGCTGGCCACCAGCCACCCC +
Preference number: 5 (lower is better)
Translates to: EGQQKESPHGQNRVEKDTAVLFL*LATSHP
Trigger: GGGGTGGCTGGTGGCCAGCAAGAGGAAGAGGACAGC...TGTGTCCTTCTCTACTCTGTTCTGTCCGTGAGGGCTTTCCTTCTGTTGCCCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CAA 90 bp TGTGGGGCCTCCTGGGGTTCTGAGATTGAAGGACTGCTCCAAATGAAGAGCTCTGCTGTCCTCTTCCTCTaGCTGGCCACCAGCCACCCC +
Preference number: 5 (lower is better)
Translates to: CGASWGSEIEGLLQMKSSAVLFL*LATSHP
Trigger: GGGGTGGCTGGTGGCCAGCAAGAGGAAGAGGACAGC...AGAGCTCTTCATTTGGAGCAGTCCTTCAATCTCAGAACCCCAGGAGGCCCCACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
ENSMUST00000238807.2
CDS CCA 90 bp TGCAGACACAGGCACATGCCAATGAAGAACGAGTGGGCACACAGCTaGACAAACGTCGCCATGCCCCATACCCGAGCCAGGCCTCTAGTT +
Preference number: 5 (lower is better)
Translates to: CRHRHMPMKNEWAHS*TNVAMPHTRARPLV
Trigger: AACTAGAGGCCTGGCTCGGGTATGGGGCATGGCGACGTTTGTCCAGCTGTGTGCCCACTCGTTCTTCATTGGCATGTGCCTGTGTCTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238807.2
CDS-3UTR CAA 90 bp CTCTCCCAGGGCAGCCAGCTGGGGCAGACACCTCAGGAGTACACCAGGGGAAGGTCAATGTTGCCATCATaGTCAATGAGGAAAGGGGTG +
Preference number: 5 (lower is better)
Translates to: LSQGSQLGQTPQEYTRGRSMLPS*SMRKGV
Trigger: CACCCCTTTCCTCATTGACAATGATGGCAACATTGA...CCTTCCCCTGGTGTACTCCTGAGGTGTCTGCCCCAGCTGGCTGCCCTGGGAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CAA 90 bp AGCCCAAGGCAGGGGCAGGCTGAAGGAGGAGGGCAACTCCTGTGGGGCCTCCTGTCTGTGTTCTCAATGTaGCCATCATTGTCAATGAGG +
Preference number: 5 (lower is better)
Translates to: SPRQGQAEGGGQLLWGLLSVFSM*PSLSMR
Trigger: CCTCATTGACAATGATGGCAACATTGAGAACACAGA...CAGGAGGCCCCACAGGAGTTGCCCTCCTCCTTCAGCCTGCCCCTGCCTTGGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CAA 90 bp AGGCTGAAGGAGGAGGGCAACTCCTGTGGGGCCTCCTGGGGTTCTGAGATTGAATGGACCTTCATGCCTTaGCCCAGGCTCTCGAAATCC +
Preference number: 5 (lower is better)
Translates to: RLKEEGNSCGASWGSEIEWTFMP*PRLSKS
Trigger: GGATTTCGAGAGCCTGGGCAAAGGCATGAAGGTCCA...TTCAATCTCAGAACCCCAGGAGGCCCCACAGGAGTTGCCCTCCTCCTTCAGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS GCA 90 bp GGCCACAGAACGAGCAGCCATAAACACAACCTGGGCCCCATTCTGTaGTGCCAGAGAGAGCACTCGGAGAAGCACAAGGAAGCAAAGCAG +
Preference number: 5 (lower is better)
Translates to: GHRTSSHKHNLGPIL*CQREHSEKHKEAKQ
Trigger: CTGCTTTGCTTCCTTGTGCTTCTCCGAGTGCTCTCTCTGGCAGCACAGAATGGGGCCCAGGTTGTGTTTATGGCTGCTCGTTCTGTGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238807.2
CDS CCA 90 bp GGTCTCCAGACGGATGCCAGGGAACAAAGCCAAGCTCCCGGCTCCTaGGGCATATTCAATCCTTTTGTTCCAGCCTTGCCAGCTGGGTTT +
Preference number: 5 (lower is better)
Translates to: GLQTDAREQSQAPGS*GIFNPFVPALPAGF
Trigger: AAACCCAGCTGGCAAGGCTGGAACAAAAGGATTGAATATGCCCCAGGAGCCGGGAGCTTGGCTTTGTTCCCTGGCATCCGTCTGGAGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS CCA 90 bp GAAAAGCAGATGTGCAGACACAGGCACATGCCAATGAAGAACGAGTaGGCACACAGCTGGACAAACGTCGCCATGCCCCATACCCGAGCC +
Preference number: 5 (lower is better)
Translates to: EKQMCRHRHMPMKNE*AHSWTNVAMPHTRA
Trigger: GGCTCGGGTATGGGGCATGGCGACGTTTGTCCAGCTGTGTGCCCACTCGTTCTTCATTGGCATGTGCCTGTGTCTGCACATCTGCTTTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238807.2
CDS-3UTR CAA 90 bp CCACCCCCTACCCTCATCCCAGGACATGACAATGCCACGCACACGCACACATACGTTGCCAGAGCTGATTaGAAGCAGAGAGGCCAGCAA +
Preference number: 5 (lower is better)
Translates to: PPPTLIPGHDNATHTHTYVARAD*KQRGQQ
Trigger: TTGCTGGCCTCTCTGCTTCAAATCAGCTCTGGCAAC...GTATGTGTGCGTGTGCGTGGCATTGTCATGTCCTGGGATGAGGGTAGGGGGTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000008297.5
CDS-3UTR CAA 90 bp CCCCACAACCCAGGCAAAGCAGGCCATGGAGAAAGGAATAGAGACAGTAAGACCGGGTGGATGAGACCATaGTCGTGGATGAGAGCCGGG +
Preference number: 5 (lower is better)
Translates to: PHNPGKAGHGERNRDSKTGWMRP*SWMRAG
Trigger: CCCGGCTCTCATCCACGACAATGGTCTCATCCACCC...GGTCTTACTGTCTCTATTCCTTTCTCCATGGCCTGCTTTGCCTGGGTTGTGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CAA 90 bp CATGGAGAAAGGAATAGAGACAGTAAGACCTTGGTACTGCTCAGGCAGGAGAGGGCTGTCCTCTTCCTCTaGCTGGCCACCAGCCACCCC +
Preference number: 5 (lower is better)
Translates to: HGERNRDSKTLVLLRQERAVLFL*LATSHP
Trigger: GGGGTGGCTGGTGGCCAGCAAGAGGAAGAGGACAGC...CCTCTCCTGCCTGAGCAGTACCAAGGTCTTACTGTCTCTATTCCTTTCTCCATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS TCA 90 bp AACTCTCATCTGCTTTGGCCTCCACCTGGTGAGAAATGGAGCAGGTaGTCTGAAGATCGGGGAACAAGGGGACTCCCTCGGGTCCCTCAA +
Preference number: 5 (lower is better)
Translates to: NSHLLWPPPGEKWSR*SEDRGTRGLPRVPQ
Trigger: TTGAGGGACCCGAGGGAGTCCCCTTGTTCCCCGATCTTCAGATCACCTGCTCCATTTCTCACCAGGTGGAGGCCAAAGCAGATGAGAGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS GCA 90 bp CACAGAACGAGCAGCCATAAACACAACCTGGGCCCCATTCTGTGCTaGCAGAGAGAGCACTCGGAGAAGCACAAGGAAGCAAAGCAGAGG +
Preference number: 5 (lower is better)
Translates to: HRTSSHKHNLGPILC*QREHSEKHKEAKQR
Trigger: CCTCTGCTTTGCTTCCTTGTGCTTCTCCGAGTGCTCTCTCTGGCAGCACAGAATGGGGCCCAGGTTGTGTTTATGGCTGCTCGTTCTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238807.2
CDS CCA 90 bp CACATGGCTGGTCTGCAGCTCTATGGTGGCCTGAATGTTCCACAGTaGCTCATCACAGGTCTCCAGACGGATGCCAGGGAACAAAGCCAA +
Preference number: 5 (lower is better)
Translates to: HMAGLQLYGGLNVPQ*LITGLQTDAREQSQ
Trigger: TTGGCTTTGTTCCCTGGCATCCGTCTGGAGACCTGTGATGAGCCACTGTGGAACATTCAGGCCACCATAGAGCTGCAGACCAGCCATGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS CCA 90 bp TGGAGTATCGGCCGTTCATCTCCGAGCAAGAAAGCCGGAATTTCCTaGCATAAAGGGCAGCTCCATGCCGAAGCTGATAACGAGCCTGCC +
Preference number: 5 (lower is better)
Translates to: WSIGRSSPSKKAGIS*HKGQLHAEADNEPA
Trigger: GGCAGGCTCGTTATCAGCTTCGGCATGGAGCTGCCCTTTATGCCAGGAAATTCCGGCTTTCTTGCTCGGAGATGAACGGCCGATACTCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CAA 90 bp CCCCCTACCCTCATCCCAGGACATGACAATGCCACGCACACGCACACATACAAGCATGGCTTGTGCTTGTaGGCTTTGTTGCCAGAGCTG +
Preference number: 5 (lower is better)
Translates to: PPTLIPGHDNATHTHTYKHGLCL*ALLPEL
Trigger: CAGCTCTGGCAACAAAGCCAACAAGCACAAGCCATG...CTTGTATGTGTGCGTGTGCGTGGCATTGTCATGTCCTGGGATGAGGGTAGGGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000008297.5
CDS-3UTR CAA 90 bp AGGAGGGCAACTCCTGTGGGGCCTCCTGGGGTTCTGAGATTGAAGGACTGCTCCTCACAGCCGTCCAAGTaGTGTACAATCTCATCTGAC +
Preference number: 5 (lower is better)
Translates to: RRATPVGPPGVLRLKDCSSQPSK*CTISSD
Trigger: GTCAGATGAGATTGTACACAACTTGGACGGCTGTGA...GGAGCAGTCCTTCAATCTCAGAACCCCAGGAGGCCCCACAGGAGTTGCCCTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CAA 90 bp TTCCCACCTCAACCAAGGCTGTTGACATCCCCCTCCCTAATACAGTGCATGGCTACCACCCAGGGGAACTaGCACAGCTTGTGTGCCATT +
Preference number: 5 (lower is better)
Translates to: FPPQPRLLTSPSLIQCMATTQGN*HSLCAI
Trigger: AATGGCACACAAGCTGTGCAAGTTCCCCTGGGTGGT...AGCCATGCACTGTATTAGGGAGGGGGATGTCAACAGCCTTGGTTGAGGTGGGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CAA 90 bp AGGCTGAGAAGAGGGAGGAGCAGGGATCCCCAGAGTGAAATGGAAATAGAGGCGAGCTTCCAGAGGAACTaGACAGGACGAGCACTCTCA +
Preference number: 5 (lower is better)
Translates to: RLRRGRSRDPQSEMEIEASFQRN*TGRALS
Trigger: TGAGAGTGCTCGTCCTGTCAAGTTCCTCTGGAAGCT...CGCCTCTATTTCCATTTCACTCTGGGGATCCCTGCTCCTCCCTCTTCTCAGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CAA 90 bp AGGACACAGCAGCAGGCTCCCATCAATTGCATTCCCACCTCAACCAAGGCTGTTTCTTCACTAAAGCACTaGACAGCGGTGGTGAGGCGC +
Preference number: 5 (lower is better)
Translates to: RTQQQAPINCIPTSTKAVSSLKH*TAVVRR
Trigger: GCGCCTCACCACCGCTGTCAAGTGCTTTAGTGAAGA...AACAGCCTTGGTTGAGGTGGGAATGCAATTGATGGGAGCCTGCTGCTGTGTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS GCA 90 bp CAGGACGAGCACTCTCAAGCAACGGCCAGTAGAGAAAGGCAATTCTaGAGCCATGGACAGTCAGTGAGTAGTGAGAGTAGCCGTCCTCAT +
Preference number: 5 (lower is better)
Translates to: QDEHSQATASRERQF*SHGQSVSSESSRPH
Trigger: ATGAGGACGGCTACTCTCACTACTCACTGACTGTCCATGGCTGCAGAATTGCCTTTCTCTACTGGCCGTTGCTTGAGAGTGCTCGTCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS TCA 90 bp GCAAACTCATTCACATCATTGACCCGAACATGCACGGTTGCCTTGTaGGACTTCTTGGTATTGGTGCCATCGGGTCCCTCGCCACAGTCA +
Preference number: 5 (lower is better)
Translates to: ANSFTSLTRTCTVAL*DFLVLVPSGPSPQS
Trigger: TGACTGTGGCGAGGGACCCGATGGCACCAATACCAAGAAGTCTCACAAGGCAACCGTGCATGTTCGGGTCAATGATGTGAATGAGTTTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS CCA 90 bp ACAAGGAAGCAAAGCAGAGGAGCCCCAAATCCCAGAAACAGCAAATaGAGGAAGAGACCCCATAGATACAGTCCCAAGCCCAGAACCCTC +
Preference number: 5 (lower is better)
Translates to: TRKQSRGAPNPRNSK*RKRPHRYSPKPRTL
Trigger: GAGGGTTCTGGGCTTGGGACTGTATCTATGGGGTCTCTTCCTCCATTTGCTGTTTCTGGGATTTGGGGCTCCTCTGCTTTGCTTCCTTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238807.2
CDS-3UTR CAA 90 bp GAGGGGCAACAGAAGGAAAGCCCTCACGGACAGAACAGAGTAGAGAAGGACACAGGGAACTTGCACAGCTaGTGTGCCATTGAACCAGTA +
Preference number: 5 (lower is better)
Translates to: EGQQKESPHGQNRVEKDTGNLHS*CAIEPV
Trigger: TACTGGTTCAATGGCACACAAGCTGTGCAAGTTCCC...TGTGTCCTTCTCTACTCTGTTCTGTCCGTGAGGGCTTTCCTTCTGTTGCCCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CAA 90 bp CATGGAGAAAGGAATAGAGACAGTAAGACCTTGGTACTGCTCAGGCAGGAGAGGTCCTCCTTCTTCCCCTaGCTGGGAGTCACACTATGC +
Preference number: 5 (lower is better)
Translates to: HGERNRDSKTLVLLRQERSSFFP*LGVTLC
Trigger: GCATAGTGTGACTCCCAGCAAGGGGAAGAAGGAGGA...CCTCTCCTGCCTGAGCAGTACCAAGGTCTTACTGTCTCTATTCCTTTCTCCATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CAA 90 bp TTTCTAGTTGTTTTATTTGAAAACCCTAGGGTGCGGCCCTCCTTTACCACACCCGGGTGGATGAGACCATaGTCGTGGATGAGAGCCGGG +
Preference number: 5 (lower is better)
Translates to: FLVVLFENPRVRPSFTTPGWMRP*SWMRAG
Trigger: CCCGGCTCTCATCCACGACAATGGTCTCATCCACCC...GGGTGTGGTAAAGGAGGGCCGCACCCTAGGGTTTTCAAATAAAACAACTAGAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CAA 90 bp TGTGGGGCCTCCTGGGGTTCTGAGATTGAAGGACTGCTCCAAATGAAGAGCTCTACTCTCACATGGACCTaGGAGCTGATGGTGGAAAAG +
Preference number: 5 (lower is better)
Translates to: CGASWGSEIEGLLQMKSSTLTWT*ELMVEK
Trigger: CTTTTCCACCATCAGCTCCAAGGTCCATGTGAGAGT...AGAGCTCTTCATTTGGAGCAGTCCTTCAATCTCAGAACCCCAGGAGGCCCCACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000238807.2
CDS TCA 90 bp GGTACAGACGCTCCACAAAGACCGGGGCAAACTCATTCACATCATTaGCCCGAACATGCACGGTTGCCTTGTGAGACTTCTTGGTATTGG +
Preference number: 5 (lower is better)
Translates to: GTDAPQRPGQTHSHH*PEHARLPCETSWYW
Trigger: CCAATACCAAGAAGTCTCACAAGGCAACCGTGCATGTTCGGGTCAATGATGTGAATGAGTTTGCCCCGGTCTTTGTGGAGCGTCTGTACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS TCA 90 bp CAACGGCCAGTAGAGAAAGGCAATTCTGCAGCCATGGACAGTCAGTaGGTAGTGAGAGTAGCCGTCCTCATTCTGGACTGTGTTACACAC +
Preference number: 5 (lower is better)
Translates to: QRPVEKGNSAAMDSQ*VVRVAVLILDCVTH
Trigger: GTGTGTAACACAGTCCAGAATGAGGACGGCTACTCTCACTACTCACTGACTGTCCATGGCTGCAGAATTGCCTTTCTCTACTGGCCGTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CAA 90 bp CAGCAGGCTCCCATCAATTGCATTCCCACCTCAACCAAGGCTGTTGACATCCCCTCAATGTTGCCATCATaGTCAATGAGGAAAGGGGTG +
Preference number: 5 (lower is better)
Translates to: QQAPINCIPTSTKAVDIPSMLPS*SMRKGV
Trigger: CACCCCTTTCCTCATTGACAATGATGGCAACATTGA...GGGGATGTCAACAGCCTTGGTTGAGGTGGGAATGCAATTGATGGGAGCCTGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CAA 90 bp TTTCTAGTTGTTTTATTTGAAAACCCTAGGGTGCGGCCCTCCTTTACCACACCCTCCTCCTTCTTCCCCTaGCTGGGAGTCACACTATGC +
Preference number: 5 (lower is better)
Translates to: FLVVLFENPRVRPSFTTPSSFFP*LGVTLC
Trigger: GCATAGTGTGACTCCCAGCAAGGGGAAGAAGGAGGA...GGGTGTGGTAAAGGAGGGCCGCACCCTAGGGTTTTCAAATAAAACAACTAGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CAA 90 bp CCCACAACCCAGGCAAAGCAGGCCATGGAGAAAGGAATAGAGACAGTAAGACCTTCACAGCCGTCCAAGTaGTGTACAATCTCATCTGAC +
Preference number: 5 (lower is better)
Translates to: PTTQAKQAMEKGIETVRPSQPSK*CTISSD
Trigger: GTCAGATGAGATTGTACACAACTTGGACGGCTGTGA...AGGTCTTACTGTCTCTATTCCTTTCTCCATGGCCTGCTTTGCCTGGGTTGTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CAA 90 bp TTCCCACCTCAACCAAGGCTGTTGACATCCCCCTCCCTAATACAGTGCATGGCTTCTGTGTTCTCAATGTaGCCATCATTGTCAATGAGG +
Preference number: 5 (lower is better)
Translates to: FPPQPRLLTSPSLIQCMASVFSM*PSLSMR
Trigger: CCTCATTGACAATGATGGCAACATTGAGAACACAGA...AGCCATGCACTGTATTAGGGAGGGGGATGTCAACAGCCTTGGTTGAGGTGGGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS-3UTR CAA 90 bp AACCCAGGCAAAGCAGGCCATGGAGAAAGGAATAGAGACAGTAAGACCTTGGTAGCATATTCAATCCTTTaGTTCCAGCCTTGCCAGCTG +
Preference number: 5 (lower is better)
Translates to: NPGKAGHGERNRDSKTLVAYSIL*FQPCQL
Trigger: CAGCTGGCAAGGCTGGAACAAAAGGATTGAATATGC...TACCAAGGTCTTACTGTCTCTATTCCTTTCTCCATGGCCTGCTTTGCCTGGGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS TCA 72 bp GTCCTGCAGGGCTGCTGTTCCTGCGGAGTCTCCCCCTaGGGTCTCCCTACTTCCACCGCTGCACTCCGGGGC +
Preference number: 6 (lower is better)
Translates to: VLQGCCSCGVSP*GLPTSTAALRG
Trigger: GCCCCGGAGTGCAGCGGTGGAAGTAGGGAGACCTCAGGGGGAGACTCCGCAGGAACAGCAGCCCTGCAGGAC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000238807.2
ENSMUST00000239139.2
CDS CCA 72 bp TGTAGTGCACCGACAGCCCCGCTGTCCAGTTGGCATTaGGGCCGGGCATGGGCAACAGGTCCACCTCCCCAG +
Preference number: 6 (lower is better)
Translates to: CSAPTAPLSSWH*GRAWATGPPPQ
Trigger: CTGGGGAGGTGGACCTGTTGCCCATGCCCGGCCCCAATGCCAACTGGACAGCGGGGCTGTCGGTGCACTACA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS CCA 72 bp CCTGGCTGTAGTGCACCGACAGCCCCGCTGTCCAGTTaGCATTGGGGCCGGGCATGGGCAACAGGTCCACCT +
Preference number: 6 (lower is better)
Translates to: PGCSAPTAPLSS*HWGRAWATGPP
Trigger: AGGTGGACCTGTTGCCCATGCCCGGCCCCAATGCCAACTGGACAGCGGGGCTGTCGGTGCACTACAGCCAGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS TCA 72 bp AGTCCAGCCCCTCCCGACATGCATAGAGGCACTCGATaGCCTCACGGCTCTCCAGGCGACCTGAGCGCACGC +
Preference number: 6 (lower is better)
Translates to: SPAPPDMHRGTR*PHGSPGDLSAR
Trigger: GCGTGCGCTCAGGTCGCCTGGAGAGCCGTGAGGTCATCGAGTGCCTCTATGCATGTCGGGAGGGGCTGGACT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS GCA 72 bp CGGAGTCTCCCCCTGAGGTCTCCCTACTTCCACCGCTaGACTCCGGGGCCTCCCACCCTGAAGCCTCATTCT +
Preference number: 6 (lower is better)
Translates to: RSLPLRSPYFHR*TPGPPTLKPHS
Trigger: AGAATGAGGCTTCAGGGTGGGAGGCCCCGGAGTGCAGCGGTGGAAGTAGGGAGACCTCAGGGGGAGACTCCG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000238807.2
ENSMUST00000239139.2
CDS CCA 72 bp TCGCAGCACTGGGGACCATGGAGTTCCGGTGGGAGCTaGCCAGGCTGTGTCCAGCCATCTCAGGAGGAGGCT +
Preference number: 6 (lower is better)
Translates to: SQHWGPWSSGGS*PGCVQPSQEEA
Trigger: AGCCTCCTCCTGAGATGGCTGGACACAGCCTGGCCAGCTCCCACCGGAACTCCATGGTCCCCAGTGCTGCGA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS GCA 72 bp CACGGGCTCCTTAGCCCGGATCAGCCCTTCACCCGTTaGCTTGTCCAGGATCACAGCCTCGAAGGGTACCCC +
Preference number: 6 (lower is better)
Translates to: HGLLSPDQPFTR*LVQDHSLEGYP
Trigger: GGGGTACCCTTCGAGGCTGTGATCCTGGACAAGGCAACGGGTGAAGGGCTGATCCGGGCTAAGGAGCCCGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
ENSMUST00000150774.3
CDS CAA 90 bp CAGTCCACGGGCTCCTTAGCCCGGATCAGCCCTTCACCCGTTGCCTaGTCCAGGATCACAGCCTCGAAGGGTACCCCAGATCCATGGAGC +
Preference number: 6 (lower is better)
Translates to: QSTGSLARISPSPVA*SRITASKGTPDPWS
Trigger: GCTCCATGGATCTGGGGTACCCTTCGAGGCTGTGATCCTGGACAAGGCAACGGGTGAAGGGCTGATCCGGGCTAAGGAGCCCGTGGACTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
ENSMUST00000150774.3
CDS TCA 72 bp GAGGCTGGTGACCCCGGTGCAGGAACTGCTGTGAACTaGGCACATGACTGGGATGGGCCACCCGGTTCATGC +
Preference number: 6 (lower is better)
Translates to: EAGDPGAGTAVN*AHDWDGPPGSC
Trigger: GCATGAACCGGGTGGCCCATCCCAGTCATGTGCTCAGTTCACAGCAGTTCCTGCACCGGGGTCACCAGCCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS GCA 72 bp GTCTCCACATCATCCCCCTCCAGGGTGAGCAGGGACTaGGAGGGGTTCACGTGGACCTTCATGCCTTTGCCC +
Preference number: 6 (lower is better)
Translates to: VSTSSPSRVSRD*EGFTWTFMPLP
Trigger: GGGCAAAGGCATGAAGGTCCACGTGAACCCCTCGCAGTCCCTGCTCACCCTGGAGGGGGATGATGTGGAGAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS TCA 72 bp CTGCACTCCGGGGCCTCCCACCCTGAAGCCTCATTCTaGTGCCCAGGTTCAGGGGTACATGGACTCTCACAG +
Preference number: 6 (lower is better)
Translates to: LHSGASHPEASF*CPGSGVHGLSQ
Trigger: CTGTGAGAGTCCATGTACCCCTGAACCTGGGCATCAGAATGAGGCTTCAGGGTGGGAGGCCCCGGAGTGCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000238807.2
ENSMUST00000239139.2
CDS TCA 72 bp ACTGGGGACCACTCGTCTGGGCTCACTCCTGTTCCGTaGCACCTCCCTTCTCCTTGTGGGCCTGAGGTTCCT +
Preference number: 6 (lower is better)
Translates to: TGDHSSGLTPVP*HLPSPCGPEVP
Trigger: AGGAACCTCAGGCCCACAAGGAGAAGGGAGGTGTCACGGAACAGGAGTGAGCCCAGACGAGTGGTCCCCAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238807.2
CDS CCA 72 bp GCCCCAATCATGAGTGCAGGTTCCCTCCTGGGTGGGTaGATGAGACCATTGTCGTGGATGAGAGCCGGGTCG +
Preference number: 6 (lower is better)
Translates to: APIMSAGSLLGG*MRPLSWMRAGS
Trigger: CGACCCGGCTCTCATCCACGACAATGGTCTCATCCACCCACCCAGGAGGGAACCTGCACTCATGATTGGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS CCA 72 bp GCAGGCCCCAATCATGAGTGCAGGTTCCCTCCTGGGTaGGTGGATGAGACCATTGTCGTGGATGAGAGCCGG +
Preference number: 6 (lower is better)
Translates to: AGPNHECRFPPG*VDETIVVDESR
Trigger: CCGGCTCTCATCCACGACAATGGTCTCATCCACCCACCCAGGAGGGAACCTGCACTCATGATTGGGGCCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS CAA 72 bp GGCTCCTTAGCCCGGATCAGCCCTTCACCCGTTGCCTaGTCCAGGATCACAGCCTCGAAGGGTACCCCAGAT +
Preference number: 6 (lower is better)
Translates to: GSLARISPSPVA*SRITASKGTPD
Trigger: ATCTGGGGTACCCTTCGAGGCTGTGATCCTGGACAAGGCAACGGGTGAAGGGCTGATCCGGGCTAAGGAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
ENSMUST00000150774.3
CDS GCA 72 bp CCATACCCGAGCCAGGCCTCTAGTTACCCACACAACTaGCTGTACCAGCCACCTAGCAGCCTGCTCACACAG +
Preference number: 6 (lower is better)
Translates to: PYPSQASSYPHN*LYQPPSSLLTQ
Trigger: CTGTGTGAGCAGGCTGCTAGGTGGCTGGTACAGGCAGTTGTGTGGGTAACTAGAGGCCTGGCTCGGGTATGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238807.2
CDS CCA 72 bp CAAGGGGACTCCCTCGGGTCCCTCAAAGTCCACAGCTaGGCGGGCAAAATGAGCTGTGCCACTCAGAAGGAT +
Preference number: 6 (lower is better)
Translates to: QGDSLGSLKVHS*AGKMSCATQKD
Trigger: ATCCTTCTGAGTGGCACAGCTCATTTTGCCCGCCCAGCTGTGGACTTTGAGGGACCCGAGGGAGTCCCCTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS CCA 72 bp AGGCACATGCCAATGAAGAACGAGTGGGCACACAGCTaGACAAACGTCGCCATGCCCCATACCCGAGCCAGG +
Preference number: 6 (lower is better)
Translates to: RHMPMKNEWAHS*TNVAMPHTRAR
Trigger: CCTGGCTCGGGTATGGGGCATGGCGACGTTTGTCCAGCTGTGTGCCCACTCGTTCTTCATTGGCATGTGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238807.2
CDS TCA 72 bp CTGCTTTGGCCTCCACCTGGTGAGAAATGGAGCAGGTaGTCTGAAGATCGGGGAACAAGGGGACTCCCTCGG +
Preference number: 6 (lower is better)
Translates to: LLWPPPGEKWSR*SEDRGTRGLPR
Trigger: CCGAGGGAGTCCCCTTGTTCCCCGATCTTCAGATCACCTGCTCCATTTCTCACCAGGTGGAGGCCAAAGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS GCA 72 bp GCTCTCGAAATCCCTATAGTCCAGCCCCTCCCGACATaGATAGAGGCACTCGATGACCTCACGGCTCTCCAG +
Preference number: 6 (lower is better)
Translates to: ALEIPIVQPLPT*IEALDDLTALQ
Trigger: CTGGAGAGCCGTGAGGTCATCGAGTGCCTCTATGCATGTCGGGAGGGGCTGGACTATAGGGATTTCGAGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS CCA 72 bp GTCACACTATGCTTCATCCAGAAGGACAGGGTAAAGTaGTCGCTGAAGCCATCCTGCGGCCCAGAGCCCAGC +
Preference number: 6 (lower is better)
Translates to: VTLCFIQKDRVK*SLKPSCGPEPS
Trigger: GCTGGGCTCTGGGCCGCAGGATGGCTTCAGCGACCACTTTACCCTGTCCTTCTGGATGAAGCATAGTGTGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS CCA 72 bp GGTCTGCAGCTCTATGGTGGCCTGAATGTTCCACAGTaGCTCATCACAGGTCTCCAGACGGATGCCAGGGAA +
Preference number: 6 (lower is better)
Translates to: GLQLYGGLNVPQ*LITGLQTDARE
Trigger: TTCCCTGGCATCCGTCTGGAGACCTGTGATGAGCCACTGTGGAACATTCAGGCCACCATAGAGCTGCAGACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS CAA 90 bp CCAATCATGAGTGCAGGTTCCCTCCTGGGTGGGTGGATGAGACCATaGTCGTGGATGAGAGCCGGGTCGAAGGAGATACCGTCAGTATAC +
Preference number: 6 (lower is better)
Translates to: PIMSAGSLLGGWMRP*SWMRAGSKEIPSVY
Trigger: GTATACTGACGGTATCTCCTTCGACCCGGCTCTCATCCACGACAATGGTCTCATCCACCCACCCAGGAGGGAACCTGCACTCATGATTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS GCA 72 bp AGCAGCCATAAACACAACCTGGGCCCCATTCTGTGCTaGCAGAGAGAGCACTCGGAGAAGCACAAGGAAGCA +
Preference number: 6 (lower is better)
Translates to: SSHKHNLGPILC*QREHSEKHKEA
Trigger: TGCTTCCTTGTGCTTCTCCGAGTGCTCTCTCTGGCAGCACAGAATGGGGCCCAGGTTGTGTTTATGGCTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238807.2
CDS GCA 72 bp ACGAGCAGCCATAAACACAACCTGGGCCCCATTCTGTaGTGCCAGAGAGAGCACTCGGAGAAGCACAAGGAA +
Preference number: 6 (lower is better)
Translates to: TSSHKHNLGPIL*CQREHSEKHKE
Trigger: TTCCTTGTGCTTCTCCGAGTGCTCTCTCTGGCAGCACAGAATGGGGCCCAGGTTGTGTTTATGGCTGCTCGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238807.2
CDS CCA 72 bp ATGTGCAGACACAGGCACATGCCAATGAAGAACGAGTaGGCACACAGCTGGACAAACGTCGCCATGCCCCAT +
Preference number: 6 (lower is better)
Translates to: MCRHRHMPMKNE*AHSWTNVAMPH
Trigger: ATGGGGCATGGCGACGTTTGTCCAGCTGTGTGCCCACTCGTTCTTCATTGGCATGTGCCTGTGTCTGCACAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238807.2
CDS TCA 72 bp GTGGTGGGTTCAACAGGACCGTGTTGTCATTCTCCATaGCAATGCCCTGGTACTCTGCCTCGATCCATGGCT +
Preference number: 6 (lower is better)
Translates to: VVGSTGPCCHSP*QCPGTLPRSMA
Trigger: AGCCATGGATCGAGGCAGAGTACCAGGGCATTGTCATGGAGAATGACAACACGGTCCTGTTGAACCCACCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008297.5
CDS GCA 72 bp CATGCACGGTTGCCTTGTGAGACTTCTTGGTATTGGTaGCATCGGGTCCCTCGCCACAGTCATAAGCCTGAA +
Preference number: 6 (lower is better)
Translates to: HARLPCETSWYW*HRVPRHSHKPE
Trigger: TTCAGGCTTATGACTGTGGCGAGGGACCCGATGGCACCAATACCAAGAAGTCTCACAAGGCAACCGTGCATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS CCA 72 bp GAACATGCACGGTTGCCTTGTGAGACTTCTTGGTATTaGTGCCATCGGGTCCCTCGCCACAGTCATAAGCCT +
Preference number: 6 (lower is better)
Translates to: EHARLPCETSWY*CHRVPRHSHKP
Trigger: AGGCTTATGACTGTGGCGAGGGACCCGATGGCACCAATACCAAGAAGTCTCACAAGGCAACCGTGCATGTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS CCA 72 bp GGCCGTTCATCTCCGAGCAAGAAAGCCGGAATTTCCTaGCATAAAGGGCAGCTCCATGCCGAAGCTGATAAC +
Preference number: 6 (lower is better)
Translates to: GRSSPSKKAGIS*HKGQLHAEADN
Trigger: GTTATCAGCTTCGGCATGGAGCTGCCCTTTATGCCAGGAAATTCCGGCTTTCTTGCTCGGAGATGAACGGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS CAA 90 bp GGGTCTAGGTCATCCCCCACCAGAGAAATCTCACAGCCGTCCAAGTaGTGTACAATCTCATCTGACATGCGTGTGTCTGTCACTGTGCCC +
Preference number: 6 (lower is better)
Translates to: GSRSSPTREISQPSK*CTISSDMRVSVTVP
Trigger: GGGCACAGTGACAGACACACGCATGTCAGATGAGATTGTACACAACTTGGACGGCTGTGAGATTTCTCTGGTGGGGGATGACCTAGACCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS TCA 72 bp TTCACATCATTGACCCGAACATGCACGGTTGCCTTGTaGGACTTCTTGGTATTGGTGCCATCGGGTCCCTCG +
Preference number: 6 (lower is better)
Translates to: FTSLTRTCTVAL*DFLVLVPSGPS
Trigger: CGAGGGACCCGATGGCACCAATACCAAGAAGTCTCACAAGGCAACCGTGCATGTTCGGGTCAATGATGTGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS GCA 72 bp TGGACTCTCACAGGCAGTGAGAGACAGAAGGGCATATaGACTCTCACATGGACCTTGGAGCTGATGGTGGAA +
Preference number: 6 (lower is better)
Translates to: WTLTGSERQKGI*TLTWTLELMVE
Trigger: TTCCACCATCAGCTCCAAGGTCCATGTGAGAGTGCATATGCCCTTCTGTCTCTCACTGCCTGTGAGAGTCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238807.2
CDS CCA 72 bp CAAAGCAGAGGAGCCCCAAATCCCAGAAACAGCAAATaGAGGAAGAGACCCCATAGATACAGTCCCAAGCCC +
Preference number: 6 (lower is better)
Translates to: QSRGAPNPRNSK*RKRPHRYSPKP
Trigger: GGGCTTGGGACTGTATCTATGGGGTCTCTTCCTCCATTTGCTGTTTCTGGGATTTGGGGCTCCTCTGCTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238807.2
CDS CAA 72 bp TCCAAGGCAAAGAGTGGTGGGTTCAACAGGACCGTGTaGTCATTCTCCATGACAATGCCCTGGTACTCTGCC +
Preference number: 6 (lower is better)
Translates to: SKAKSGGFNRTV*SFSMTMPWYSA
Trigger: GGCAGAGTACCAGGGCATTGTCATGGAGAATGACAACACGGTCCTGTTGAACCCACCACTCTTTGCCTTGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008297.5
CDS TCA 72 bp TCCATGGCTTGTGCTTGTTGGCTTTGTTGCCAGAGCTaGTTTGAAGCAGAGAGGCCAGCAAAAGGGACACCA +
Preference number: 6 (lower is better)
Translates to: SMACACWLCCQS*FEAERPAKGTP
Trigger: TGGTGTCCCTTTTGCTGGCCTCTCTGCTTCAAATCAGCTCTGGCAACAAAGCCAACAAGCACAAGCCATGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008297.5
CDS TCA 72 bp GCTCCACAAAGACCGGGGCAAACTCATTCACATCATTaGCCCGAACATGCACGGTTGCCTTGTGAGACTTCT +
Preference number: 6 (lower is better)
Translates to: APQRPGQTHSHH*PEHARLPCETS
Trigger: AGAAGTCTCACAAGGCAACCGTGCATGTTCGGGTCAATGATGTGAATGAGTTTGCCCCGGTCTTTGTGGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS TCA 72 bp AGAAGGGCATATGCACTCTCACATGGACCTTGGAGCTaGTGGTGGAAAAGCAGATGTGCAGACACAGGCACA +
Preference number: 6 (lower is better)
Translates to: RRAYALSHGPWS*WWKSRCADTGT
Trigger: TGTGCCTGTGTCTGCACATCTGCTTTTCCACCATCAGCTCCAAGGTCCATGTGAGAGTGCATATGCCCTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238807.2
CDS TCA 72 bp AATCTCACAGCCGTCCAAGTTGTGTACAATCTCATCTaGCATGCGTGTGTCTGTCACTGTGCCCTGCCAACT +
Preference number: 6 (lower is better)
Translates to: NLTAVQVVYNLI*HACVCHCALPT
Trigger: AGTTGGCAGGGCACAGTGACAGACACACGCATGTCAGATGAGATTGTACACAACTTGGACGGCTGTGAGATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS CAA 72 bp TCATCCCCCACCAGAGAAATCTCACAGCCGTCCAAGTaGTGTACAATCTCATCTGACATGCGTGTGTCTGTC +
Preference number: 6 (lower is better)
Translates to: SSPTREISQPSK*CTISSDMRVSV
Trigger: GACAGACACACGCATGTCAGATGAGATTGTACACAACTTGGACGGCTGTGAGATTTCTCTGGTGGGGGATGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8
CDS GCA 72 bp AAACTCATTCACATCATTGACCCGAACATGCACGGTTaGCTTGTGAGACTTCTTGGTATTGGTGCCATCGGG +
Preference number: 6 (lower is better)
Translates to: KLIHIIDPNMHG*LVRLLGIGAIG
Trigger: CCCGATGGCACCAATACCAAGAAGTCTCACAAGGCAACCGTGCATGTTCGGGTCAATGATGTGAATGAGTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000008297.5
ENSMUST00000112523.8