RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CLSTN1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039953

Ensembl transcript IDs: ENSMUST00000039144.7, ENSMUST00000105691.8

Found 319 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GTCGACAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTaGTGTCCTCTCCCTGGCCGACAGGGAACTCCAGACACACTTGGG +
Preference number: 1 (lower is better)
Translates to: VDKSAQCGFSGGPRC*CPLPGRQGTPDTLG
Trigger: CCCAAGTGTGTCTGGAGTTCCCTGTCGGCCAGGGAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTGTCGAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
3UTR TCA 90 bp GTTGTGCAGACTTGCTCAGAACCGTGGTCTTCCAAGCGAGGAGCCTaGCCGCCTGCACCTTTGCTGTCCGTTCCCAGCTACACCATTTCA +
Preference number: 1 (lower is better)
Translates to: VVQTCSEPWSSKRGA*PPAPLLSVPSYTIS
Trigger: TGAAATGGTGTAGCTGGGAACGGACAGCAAAGGTGCAGGCGGTCAGGCTCCTCGCTTGGAAGACCACGGTTCTGAGCAAGTCTGCACAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
3UTR CCA 90 bp CAGCACGGCGGCATCCTTCGAACTAGCAGCAACAGCAGCGAGGACTaGATGTCCCAGCTGGAGCAGTCTAAACTCTTGACTGTGAATGAA +
Preference number: 1 (lower is better)
Translates to: QHGGILRTSSNSSED*MSQLEQSKLLTVNE
Trigger: TTCATTCACAGTCAAGAGTTTAGACTGCTCCAGCTGGGACATCCAGTCCTCGCTGCTGTTGCTGCTAGTTCGAAGGATGCCGCCGTGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
3UTR GCA 90 bp GAGCATTGTAGCAGTTTATCTTTGGGCCTCGGGGTCTCCTTTTGGTaGTGTTGTGCAGACTTGCTCAGAACCGTGGTCTTCCAAGCGAGG +
Preference number: 1 (lower is better)
Translates to: EHCSSLSLGLGVSFW*CCADLLRTVVFQAR
Trigger: CCTCGCTTGGAAGACCACGGTTCTGAGCAAGTCTGCACAACAGCACCAAAAGGAGACCCCGAGGCCCAAAGATAAACTGCTACAATGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
3UTR CCA 90 bp CTGGAGCATTGTAGCAGTTTATCTTTGGGCCTCGGGGTCTCCTTTTaGTGCTGTTGTGCAGACTTGCTCAGAACCGTGGTCTTCCAAGCG +
Preference number: 1 (lower is better)
Translates to: LEHCSSLSLGLGVSF*CCCADLLRTVVFQA
Trigger: CGCTTGGAAGACCACGGTTCTGAGCAAGTCTGCACAACAGCACCAAAAGGAGACCCCGAGGCCCAAAGATAAACTGCTACAATGCTCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
3UTR CCA 90 bp TGGGTCTTAGATCTTAGCCCAAACCCAACAGCACGCGGCATCCCATaGGGCCTCTGGGGAGGAGAGAAAAGATTGTTCTGGAGCATTGTA +
Preference number: 1 (lower is better)
Translates to: WVLDLSPNPTARGIP*GLWGGEKRLFWSIV
Trigger: TACAATGCTCCAGAACAATCTTTTCTCTCCTCCCCAGAGGCCCCATGGGATGCCGCGTGCTGTTGGGTTTGGGCTAAGATCTAAGACCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
3UTR-3UTR CCA 90 bp CGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCCTGGCCGGTGGGGCCCCTGCCCTaGGGAGGAAGCGCCAGCTTC +
Preference number: 2 (lower is better)
Translates to: RSVRLLWRSQVLVSSPWPVGPLP*GGSASF
Trigger: GAAGCTGGCGCTTCCTCCCCAGGGCAGGGGCCCCAC...CGGCCAGGGAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
3UTR-3UTR CCA 90 bp CGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCCTGGCCGGGCTGGGAGAGAGTCTaGAGAGCAGGCGCTGAGTGC +
Preference number: 2 (lower is better)
Translates to: RSVRLLWRSQVLVSSPWPGWERV*RAGAEC
Trigger: GCACTCAGCGCCTGCTCTCCAGACTCTCTCCCAGCC...CGGCCAGGGAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
3UTR-3UTR CCA 90 bp CGACAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTGGGTCTGAGGTGCTGTaGGGCCCCTGCCCTGGGGAG +
Preference number: 2 (lower is better)
Translates to: RQVRSVRLLWRSQVLVSSGSEVL*GPCPGE
Trigger: CTCCCCAGGGCAGGGGCCCCACAGCACCTCAGACCC...AGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTGTCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
3UTR-3UTR CCA 90 bp AAGAAAGCAGCTACAGGGGACAGGACATGGGAGGGCGGCCACAGACAGCACGGCGGGTCTGAGGTGCTGTaGGGCCCCTGCCCTGGGGAG +
Preference number: 2 (lower is better)
Translates to: KKAATGDRTWEGGHRQHGGSEVL*GPCPGE
Trigger: CTCCCCAGGGCAGGGGCCCCACAGCACCTCAGACCC...GCCGTGCTGTCTGTGGCCGCCCTCCCATGTCCTGTCCCCTGTAGCTGCTTTCTT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
3UTR-3UTR CCA 90 bp CCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCCTGGCCTACATCGTGGACCCGTaGGGCTGGGAGAGAGTCTGG +
Preference number: 2 (lower is better)
Translates to: PLSAASLEVPGAGVLSLAYIVDP*GWERVW
Trigger: CCAGACTCTCTCCCAGCCCCACGGGTCCACGATGTA...GGCCAGGGAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
3UTR-3UTR CCA 90 bp CAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCCGTGGACCCGTGGGGCTaGGAGAGAGTCTGGAGAGCA +
Preference number: 2 (lower is better)
Translates to: QVRSVRLLWRSQVLVSSPVDPWG*ERVWRA
Trigger: TGCTCTCCAGACTCTCTCCCAGCCCCACGGGTCCAC...GGGAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
3UTR-3UTR CCA 90 bp CGACAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTGGAGGGTGGAGCCGGTaGTCCCACACACCAAGCACG +
Preference number: 2 (lower is better)
Translates to: RQVRSVRLLWRSQVLVSSGGWSR*SHTPST
Trigger: CGTGCTTGGTGTGTGGGACCACCGGCTCCACCCTCC...AGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTGTCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
3UTR-3UTR CCA 90 bp AAGAAAGCAGCTACAGGGGACAGGACATGGGAGGGCGGCCACAGACAGCACGGCGGAGGGTGGAGCCGGTaGTCCCACACACCAAGCACG +
Preference number: 2 (lower is better)
Translates to: KKAATGDRTWEGGHRQHGGGWSR*SHTPST
Trigger: CGTGCTTGGTGTGTGGGACCACCGGCTCCACCCTCC...GCCGTGCTGTCTGTGGCCGCCCTCCCATGTCCTGTCCCCTGTAGCTGCTTTCTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
3UTR-3UTR TCA 90 bp GACAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCGCAAAACTGCAATGGTaGTGGGCGGGGAGGGTGGAG +
Preference number: 2 (lower is better)
Translates to: DKSAQCGFSGGPRCWCPLAKLQW*WAGRVE
Trigger: CTCCACCCTCCCCGCCCATCACCATTGCAGTTTTGC...GAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
3UTR-3UTR CCA 90 bp TACAGGAAAGGCCAGGGGCTTTGGCAACATCCTGGCTGTTCCCAGCCTCTAATGGTGGGGCCCCTGCCCTaGGGAGGAAGCGCCAGCTTC +
Preference number: 2 (lower is better)
Translates to: YRKGQGLWQHPGCSQPLMVGPLP*GGSASF
Trigger: GAAGCTGGCGCTTCCTCCCCAGGGCAGGGGCCCCAC...CATTAGAGGCTGGGAACAGCCAGGATGTTGCCAAAGCCCCTGGCCTTTCCTGTA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
3UTR-3UTR CCA 90 bp GGCTGCCAGTCACAGGCGTGTACAGGAAAGGCCAGGGGCTTTGGCAACATCCTGATGGCCCCGGCCACGTaGCTGTACGGAAACCCTAGC +
Preference number: 2 (lower is better)
Translates to: GCQSQACTGKARGFGNILMAPAT*LYGNPS
Trigger: GCTAGGGTTTCCGTACAGCCACGTGGCCGGGGCCAT...CAGGATGTTGCCAAAGCCCCTGGCCTTTCCTGTACACGCCTGTGACTGGCAGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
3UTR CAA 90 bp CCACGTGGCTGTACGGAAACCCTAGCAAGGGTGGGCCCCAGTGACTaGGGCCTCTCCAACCTGGTTTCTTGGGAGGGAAGAGGGAGGAAG +
Preference number: 2 (lower is better)
Translates to: PRGCTETLARVGPSD*GLSNLVSWEGRGRK
Trigger: CTTCCTCCCTCTTCCCTCCCAAGAAACCAGGTTGGAGAGGCCCAAGTCACTGGGGCCCACCCTTGCTAGGGTTTCCGTACAGCCACGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
3UTR-3UTR TCA 90 bp CACGGCGGCATCCTTCGAACTAGCAGCAACAGCAGCGAGGACTGGATGTCCCAGGCAAAACTGCAATGGTaGTGGGCGGGGAGGGTGGAG +
Preference number: 2 (lower is better)
Translates to: HGGILRTSSNSSEDWMSQAKLQW*WAGRVE
Trigger: CTCCACCCTCCCCGCCCATCACCATTGCAGTTTTGC...CTGGGACATCCAGTCCTCGCTGCTGTTGCTGCTAGTTCGAAGGATGCCGCCGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
3UTR-3UTR CCA 90 bp CGACAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTAACTCCAGACACACTTaGGGTCTGAGGTGCTGTGGG +
Preference number: 2 (lower is better)
Translates to: RQVRSVRLLWRSQVLVSSNSRHT*GLRCCG
Trigger: CCCACAGCACCTCAGACCCCAAGTGTGTCTGGAGTT...AGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTGTCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
3UTR CAA 90 bp CATGTGGCTGCCAGTCACAGGCGTGTACAGGAAAGGCCAGGGGCTTaGGCAACATCCTGGCTGTTCCCAGCCTCTAATGTGGTTGGAGGC +
Preference number: 2 (lower is better)
Translates to: HVAASHRRVQERPGA*ATSWLFPASNVVGG
Trigger: GCCTCCAACCACATTAGAGGCTGGGAACAGCCAGGATGTTGCCAAAGCCCCTGGCCTTTCCTGTACACGCCTGTGACTGGCAGCCACATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
3UTR-3UTR GCA 90 bp GACAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCAGTGGGGGAAGGGTCTaGAGACCTGCTGGTCAAAAT +
Preference number: 2 (lower is better)
Translates to: DKSAQCGFSGGPRCWCPLSGGRV*RPAGQN
Trigger: ATTTTGACCAGCAGGTCTGCAGACCCTTCCCCCACT...GAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTGTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
3UTR-3UTR CCA 90 bp TACAGGAAAGGCCAGGGGCTTTGGCAACATCCTGGCTGTTCCCAGCCTCTAATGGGCTGGGAGAGAGTCTaGAGAGCAGGCGCTGAGTGC +
Preference number: 2 (lower is better)
Translates to: YRKGQGLWQHPGCSQPLMGWERV*RAGAEC
Trigger: GCACTCAGCGCCTGCTCTCCAGACTCTCTCCCAGCC...CATTAGAGGCTGGGAACAGCCAGGATGTTGCCAAAGCCCCTGGCCTTTCCTGTA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
3UTR-3UTR CCA 90 bp CACGGCGGCATCCTTCGAACTAGCAGCAACAGCAGCGAGGACTGGATGTCCCAGAAAGGCCAGGGGCTTTaGCAACATCCTGGCTGTTCC +
Preference number: 2 (lower is better)
Translates to: HGGILRTSSNSSEDWMSQKGQGL*QHPGCS
Trigger: GGAACAGCCAGGATGTTGCCAAAGCCCCTGGCCTTT...CTGGGACATCCAGTCCTCGCTGCTGTTGCTGCTAGTTCGAAGGATGCCGCCGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
3UTR-3UTR TCA 90 bp TCCTTTTGGTGCTGTTGTGCAGACTTGCTCAGAACCGTGGTCTTCCAAGCGAGGAGCACGGGAGGACTTTaGGCAGTGGGGGAAGGGTCT +
Preference number: 2 (lower is better)
Translates to: SFWCCCADLLRTVVFQARSTGGL*AVGEGS
Trigger: AGACCCTTCCCCCACTGCTCAAAGTCCTCCCGTGCT...CCTCGCTTGGAAGACCACGGTTCTGAGCAAGTCTGCACAACAGCACCAAAAGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
3UTR-3UTR GCA 90 bp TCCTTTTGGTGCTGTTGTGCAGACTTGCTCAGAACCGTGGTCTTCCAAGCGAGGGACAAGTCCGCTCAGTaGGGCTTCTCTGGAGGTCCC +
Preference number: 2 (lower is better)
Translates to: SFWCCCADLLRTVVFQARDKSAQ*GFSGGP
Trigger: GGGACCTCCAGAGAAGCCGCACTGAGCGGACTTGTC...CCTCGCTTGGAAGACCACGGTTCTGAGCAAGTCTGCACAACAGCACCAAAAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
3UTR-3UTR TCA 90 bp GACAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCACCTGCTGGTCAAAATaGTTTTGTACATCGTGGACC +
Preference number: 2 (lower is better)
Translates to: DKSAQCGFSGGPRCWCPLTCWSK*FCTSWT
Trigger: GGTCCACGATGTACAAAATCATTTTGACCAGCAGGT...GAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
3UTR-3UTR GCA 90 bp AAGAGGGAGGAAGAGGCCCTCCTGGCCCCGCATTCTGACTTTACATTCCTGTCCAGTGGGGGAAGGGTCTaGAGACCTGCTGGTCAAAAT +
Preference number: 2 (lower is better)
Translates to: KREEEALLAPHSDFTFLSSGGRV*RPAGQN
Trigger: ATTTTGACCAGCAGGTCTGCAGACCCTTCCCCCACT...GGACAGGAATGTAAAGTCAGAATGCGGGGCCAGGAGGGCCTCTTCCTCCCTCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
3UTR-3UTR CCA 90 bp CTCCTGGCCCCGCATTCTGACTTTACATTCCTGTCCTGGACTACTAGCACAGAGGAGGACTTTGAGCAGTaGGGGAAGGGTCTGCAGACC +
Preference number: 2 (lower is better)
Translates to: LLAPHSDFTFLSWTTSTEEDFEQ*GKGLQT
Trigger: GGTCTGCAGACCCTTCCCCCACTGCTCAAAGTCCTC...CTCTGTGCTAGTAGTCCAGGACAGGAATGTAAAGTCAGAATGCGGGGCCAGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
3UTR-3UTR CCA 90 bp GTGTACAGGAAAGGCCAGGGGCTTTGGCAACATCCTGGCTGTTCCCAGCCTCTATCCAACCTGGTTTCTTaGGAGGGAAGAGGGAGGAAG +
Preference number: 2 (lower is better)
Translates to: VYRKGQGLWQHPGCSQPLSNLVS*EGRGRK
Trigger: CTTCCTCCCTCTTCCCTCCCAAGAAACCAGGTTGGA...TAGAGGCTGGGAACAGCCAGGATGTTGCCAAAGCCCCTGGCCTTTCCTGTACAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
3UTR-3UTR CCA 90 bp GACTTTACATTCCTGTCCTGGACTACTAGCACAGAGGACACACAGAATCCCAATGTGGACCCGTGGGGCTaGGAGAGAGTCTGGAGAGCA +
Preference number: 2 (lower is better)
Translates to: DFTFLSWTTSTEDTQNPNVDPWG*ERVWRA
Trigger: TGCTCTCCAGACTCTCTCCCAGCCCCACGGGTCCAC...ATTGGGATTCTGTGTGTCCTCTGTGCTAGTAGTCCAGGACAGGAATGTAAAGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
3UTR-3UTR CCA 90 bp GCCTCGGGGTCTCCTTTTGGTGCTGTTGTGCAGACTTGCTCAGAACCGTGGTCTTTTACATTCCTGTCCTaGACTACTAGCACAGAGGAC +
Preference number: 2 (lower is better)
Translates to: ASGSPFGAVVQTCSEPWSFTFLS*TTSTED
Trigger: GTCCTCTGTGCTAGTAGTCCAGGACAGGAATGTAAA...AGACCACGGTTCTGAGCAAGTCTGCACAACAGCACCAAAAGGAGACCCCGAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
3UTR-3UTR TCA 90 bp TTTGGTGCTGTTGTGCAGACTTGCTCAGAACCGTGGTCTTCCAAGCGAGGAGCCACCTGCTGGTCAAAATaGTTTTGTACATCGTGGACC +
Preference number: 2 (lower is better)
Translates to: FGAVVQTCSEPWSSKRGATCWSK*FCTSWT
Trigger: GGTCCACGATGTACAAAATCATTTTGACCAGCAGGT...GGCTCCTCGCTTGGAAGACCACGGTTCTGAGCAAGTCTGCACAACAGCACCAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
3UTR CCA 72 bp TCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTaGTGTCCTCTCCCTGGCCGACAGGGAACTCCAGAC +
Preference number: 3 (lower is better)
Translates to: SAQCGFSGGPRC*CPLPGRQGTPD
Trigger: GTCTGGAGTTCCCTGTCGGCCAGGGAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
3UTR CCA 72 bp ACCCTCTGTCGACAAGTCCGCTCAGTGCGGCTTCTCTaGAGGTCCCAGGTGCTGGTGTCCTCTCCCTGGCCG +
Preference number: 3 (lower is better)
Translates to: TLCRQVRSVRLL*RSQVLVSSPWP
Trigger: CGGCCAGGGAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTGTCGACAGAGGGT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
3UTR TCA 72 bp ACTTGCTCAGAACCGTGGTCTTCCAAGCGAGGAGCCTaGCCGCCTGCACCTTTGCTGTCCGTTCCCAGCTAC +
Preference number: 3 (lower is better)
Translates to: TCSEPWSSKRGA*PPAPLLSVPSY
Trigger: GTAGCTGGGAACGGACAGCAAAGGTGCAGGCGGTCAGGCTCCTCGCTTGGAAGACCACGGTTCTGAGCAAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
3UTR CCA 72 bp CGTGTACAGGAAAGGCCAGGGGCTTTGGCAACATCCTaGCTGTTCCCAGCCTCTAATGTGGTTGGAGGCTCG +
Preference number: 3 (lower is better)
Translates to: RVQERPGALATS*LFPASNVVGGS
Trigger: CGAGCCTCCAACCACATTAGAGGCTGGGAACAGCCAGGATGTTGCCAAAGCCCCTGGCCTTTCCTGTACACG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
3UTR CCA 72 bp CCAGTCACAGGCGTGTACAGGAAAGGCCAGGGGCTTTaGCAACATCCTGGCTGTTCCCAGCCTCTAATGTGG +
Preference number: 3 (lower is better)
Translates to: PVTGVYRKGQGL*QHPGCSQPLMW
Trigger: CCACATTAGAGGCTGGGAACAGCCAGGATGTTGCCAAAGCCCCTGGCCTTTCCTGTACACGCCTGTGACTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
3UTR CCA 72 bp TTTCCATCTAAGAAAGCAGCTACAGGGGACAGGACATaGGAGGGCGGCCACAGACAGCACGGCGGCATCCTT +
Preference number: 3 (lower is better)
Translates to: FPSKKAATGDRT*EGGHRQHGGIL
Trigger: AAGGATGCCGCCGTGCTGTCTGTGGCCGCCCTCCCATGTCCTGTCCCCTGTAGCTGCTTTCTTAGATGGAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
3UTR-3UTR CAA 90 bp GACAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCTGGTCAAAATGATTTaGTACATCGTGGACCCGTGG +
Preference number: 3 (lower is better)
Translates to: DKSAQCGFSGGPRCWCPLLVKMI*YIVDPW
Trigger: CCACGGGTCCACGATGTACAAAATCATTTTGACCAG...GAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
3UTR CCA 72 bp GATCTTAGCCCAAACCCAACAGCACGCGGCATCCCATaGGGCCTCTGGGGAGGAGAGAAAAGATTGTTCTGG +
Preference number: 3 (lower is better)
Translates to: DLSPNPTARGIP*GLWGGEKRLFW
Trigger: CCAGAACAATCTTTTCTCTCCTCCCCAGAGGCCCCATGGGATGCCGCGTGCTGTTGGGTTTGGGCTAAGATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
3UTR-3UTR CAA 90 bp GTCCCACACACCAAGCACGGGAGGACTTTGAGCAGTGGGGGAAGGGTCTGCAGACTGGTCAAAATGATTTaGTACATCGTGGACCCGTGG +
Preference number: 3 (lower is better)
Translates to: VPHTKHGRTLSSGGRVCRLVKMI*YIVDPW
Trigger: CCACGGGTCCACGATGTACAAAATCATTTTGACCAG...TCTGCAGACCCTTCCCCCACTGCTCAAAGTCCTCCCGTGCTTGGTGTGTGGGAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
3UTR GCA 72 bp AGCAGTTTATCTTTGGGCCTCGGGGTCTCCTTTTGGTaGTGTTGTGCAGACTTGCTCAGAACCGTGGTCTTC +
Preference number: 3 (lower is better)
Translates to: SSLSLGLGVSFW*CCADLLRTVVF
Trigger: GAAGACCACGGTTCTGAGCAAGTCTGCACAACAGCACCAAAAGGAGACCCCGAGGCCCAAAGATAAACTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
3UTR CCA 72 bp TGTAGCAGTTTATCTTTGGGCCTCGGGGTCTCCTTTTaGTGCTGTTGTGCAGACTTGCTCAGAACCGTGGTC +
Preference number: 3 (lower is better)
Translates to: CSSLSLGLGVSF*CCCADLLRTVV
Trigger: GACCACGGTTCTGAGCAAGTCTGCACAACAGCACCAAAAGGAGACCCCGAGGCCCAAAGATAAACTGCTACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR CCA 90 bp CCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCCTGGCCGCTGCGCGGGCAAAGTaGTGGACGCCACTCAGGCTG +
Preference number: 4 (lower is better)
Translates to: PLSAASLEVPGAGVLSLAAARAK*WTPLRL
Trigger: CAGCCTGAGTGGCGTCCACCACTTTGCCCGCGCAGC...GGCCAGGGAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR TCA 90 bp GTCCCACACACCAAGCACGGGAGGACTTTGAGCAGTGGGGGAAGGGTCTGCAGAGGACGGGAGCAGCTCTaGGGTGCCGGCAGCAGCCCC +
Preference number: 4 (lower is better)
Translates to: VPHTKHGRTLSSGGRVCRGREQL*GAGSSP
Trigger: GGGGCTGCTGCCGGCACCTCAGAGCTGCTCCCGTCC...TCTGCAGACCCTTCCCCCACTGCTCAAAGTCCTCCCGTGCTTGGTGTGTGGGAC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR TCA 90 bp CGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCCTGGCCGTCCCGCATCGTTCGCTaGTGTGCAGCCCGGATCCGA +
Preference number: 4 (lower is better)
Translates to: RSVRLLWRSQVLVSSPWPSRIVR*CAARIR
Trigger: TCGGATCCGGGCTGCACATCAGCGAACGATGCGGGA...CGGCCAGGGAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR GCA 90 bp CAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCCCTGCTGCTCCAGCCTTaGCACCCGGGGCTGCAGGTG +
Preference number: 4 (lower is better)
Translates to: QVRSVRLLWRSQVLVSSPLLLQP*HPGLQV
Trigger: CACCTGCAGCCCCGGGTGGCAAGGCTGGAGCAGCAG...GGGAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CCA 90 bp CCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCCTGGCCTCTCCAGCTCCACCGTaGCCTGCACAGAGGCGACAG +
Preference number: 4 (lower is better)
Translates to: PLSAASLEVPGAGVLSLASPAPP*PAQRRQ
Trigger: CTGTCGCCTCTGTGCAGGCCACGGTGGAGCTGGAGA...GGCCAGGGAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CCA 90 bp CCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCCTGGCCGCGCGGGCAAAGTGGTaGACGCCACTCAGGCTGATC +
Preference number: 4 (lower is better)
Translates to: PLSAASLEVPGAGVLSLAARAKW*TPLRLI
Trigger: GATCAGCCTGAGTGGCGTCCACCACTTTGCCCGCGC...GGCCAGGGAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CCA 90 bp CCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCCTGGCCGGCTGGGCAGCCATGTaGTTGGCATGTTCCACGGGG +
Preference number: 4 (lower is better)
Translates to: PLSAASLEVPGAGVLSLAGWAAM*LACSTG
Trigger: CCCCGTGGAACATGCCAACCACATGGCTGCCCAGCC...GGCCAGGGAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR TCA 90 bp CGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCCTGGCCGTGGTCTCCACGCCTGTaGAGACCACACCCAGGTCAG +
Preference number: 4 (lower is better)
Translates to: RSVRLLWRSQVLVSSPWPWSPRL*RPHPGQ
Trigger: CTGACCTGGGTGTGGTCTTCACAGGCGTGGAGACCA...CGGCCAGGGAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR GCA 90 bp CCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCCTGGCCGCTTCGATGCCCTTCTaGTGGAGGCGGGTCACGTCT +
Preference number: 4 (lower is better)
Translates to: PLSAASLEVPGAGVLSLAASMPF*WRRVTS
Trigger: AGACGTGACCCGCCTCCAGCAGAAGGGCATCGAAGC...GGCCAGGGAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR TCA 90 bp CAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCCCCACAGCCTCCACCCTaGGGATGCTGCTGTGCTGCT +
Preference number: 4 (lower is better)
Translates to: QVRSVRLLWRSQVLVSSPPQPPP*GCCCAA
Trigger: AGCAGCACAGCAGCATCCTCAGGGTGGAGGCTGTGG...GGGAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR TCA 90 bp GCCTCGGGGTCTCCTTTTGGTGCTGTTGTGCAGACTTGCTCAGAACCGTGGTCTGGACGGGAGCAGCTCTaGGGTGCCGGCAGCAGCCCC +
Preference number: 4 (lower is better)
Translates to: ASGSPFGAVVQTCSEPWSGREQL*GAGSSP
Trigger: GGGGCTGCTGCCGGCACCTCAGAGCTGCTCCCGTCC...AGACCACGGTTCTGAGCAAGTCTGCACAACAGCACCAAAAGGAGACCCCGAGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR TCA 90 bp CGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCCTGGCCGCATCCCCTTCCACTGTaGCCTCACAGGTGTCCAGGT +
Preference number: 4 (lower is better)
Translates to: RSVRLLWRSQVLVSSPWPHPLPL*PHRCPG
Trigger: ACCTGGACACCTGTGAGGTCACAGTGGAAGGGGATG...CGGCCAGGGAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR GCA 90 bp CGACAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCTGCGGGGAGCAGTCTaGGTCCACAGCCTCCACCCT +
Preference number: 4 (lower is better)
Translates to: RQVRSVRLLWRSQVLVSSLRGAV*VHSLHP
Trigger: AGGGTGGAGGCTGTGGACGCAGACTGCTCCCCGCAG...AGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTGTCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR GCA 90 bp CGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCCTGGCCGACCTCCAGGCTCTCCTaGTCTGCGTTCAGCTCATCC +
Preference number: 4 (lower is better)
Translates to: RSVRLLWRSQVLVSSPWPTSRLS*SAFSSS
Trigger: GGATGAGCTGAACGCAGAGCAGGAGAGCCTGGAGGT...CGGCCAGGGAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR TCA 90 bp CAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCCTCCCAGAACGGACTGTaGGGCCAGCCAGGTTACCTC +
Preference number: 4 (lower is better)
Translates to: QVRSVRLLWRSQVLVSSPSQNGL*GQPGYL
Trigger: GAGGTAACCTGGCTGGCCTCACAGTCCGTTCTGGGA...GGGAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR GCA 90 bp GTCCCACACACCAAGCACGGGAGGACTTTGAGCAGTGGGGGAAGGGTCTGCAGATGCTGCTGTGCTGCTTaGCCTCCACCACGGCCGCCT +
Preference number: 4 (lower is better)
Translates to: VPHTKHGRTLSSGGRVCRCCCAA*PPPRPP
Trigger: AGGCGGCCGTGGTGGAGGGCAAGCAGCACAGCAGCA...TCTGCAGACCCTTCCCCCACTGCTCAAAGTCCTCCCGTGCTTGGTGTGTGGGAC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR GCA 90 bp GACAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCAGGATGCTGCTGTGCTaGTTGCCCTCCACCACGGCC +
Preference number: 4 (lower is better)
Translates to: DKSAQCGFSGGPRCWCPLRMLLC*LPSTTA
Trigger: GGCCGTGGTGGAGGGCAAGCAGCACAGCAGCATCCT...GAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTGTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR GCA 90 bp CAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCCCTGAGGATGCTGCTGTaGTGCTTGCCCTCCACCACG +
Preference number: 4 (lower is better)
Translates to: QVRSVRLLWRSQVLVSSPLRMLL*CLPSTT
Trigger: CGTGGTGGAGGGCAAGCAGCACAGCAGCATCCTCAG...GGGAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR GCA 90 bp CGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCCTGGCCGAACCTCCTCGTAGCTTaGCATGGTCTCCACGCCTGT +
Preference number: 4 (lower is better)
Translates to: RSVRLLWRSQVLVSSPWPNLLVA*HGLHAC
Trigger: ACAGGCGTGGAGACCATGGCAAGCTACGAGGAGGTT...CGGCCAGGGAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CCA 90 bp CGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCCTGGCCGGGTGGGCTCGAGCCATaGCTTGTGCTTGTTAACTCG +
Preference number: 4 (lower is better)
Translates to: RSVRLLWRSQVLVSSPWPGGLEP*LVLVNS
Trigger: CGAGTTAACAAGCACAAGCCATGGCTCGAGCCCACC...CGGCCAGGGAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CCA 90 bp CCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCCTGGCCTCAAGACCGCCTGGCTaGAGCTTGCTTGGATCTGCA +
Preference number: 4 (lower is better)
Translates to: PLSAASLEVPGAGVLSLASRPPG*SLLGSA
Trigger: TGCAGATCCAAGCAAGCTCCAGCCAGGCGGTCTTGA...GGCCAGGGAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CCA 90 bp CAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCCTCGATGCCCTTCTGCTaGAGGCGGGTCACGTCTACC +
Preference number: 4 (lower is better)
Translates to: QVRSVRLLWRSQVLVSSPSMPFC*RRVTST
Trigger: GGTAGACGTGACCCGCCTCCAGCAGAAGGGCATCGA...GGGAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CCA 90 bp CGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCCTGGCCGGATCCAGCAGGGACCTaGTGTGCCAATTCCGATAGC +
Preference number: 4 (lower is better)
Translates to: RSVRLLWRSQVLVSSPWPDPAGT*CANSDS
Trigger: GCTATCGGAATTGGCACACCAGGTCCCTGCTGGATC...CGGCCAGGGAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR TCA 90 bp CGACAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTTCCCAGAACGGACTGTaGGGCCAGCCAGGTTACCTC +
Preference number: 4 (lower is better)
Translates to: RQVRSVRLLWRSQVLVSSSQNGL*GQPGYL
Trigger: GAGGTAACCTGGCTGGCCTCACAGTCCGTTCTGGGA...AGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTGTCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR GCA 90 bp GTCCCACACACCAAGCACGGGAGGACTTTGAGCAGTGGGGGAAGGGTCTGCAGAAGGATGCTGCTGTGCTaGTTGCCCTCCACCACGGCC +
Preference number: 4 (lower is better)
Translates to: VPHTKHGRTLSSGGRVCRRMLLC*LPSTTA
Trigger: GGCCGTGGTGGAGGGCAAGCAGCACAGCAGCATCCT...TCTGCAGACCCTTCCCCCACTGCTCAAAGTCCTCCCGTGCTTGGTGTGTGGGAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR GCA 90 bp ATCCTTCGAACTAGCAGCAACAGCAGCGAGGACTGGATGTCCCAGCTGGAGCAGCTGCTGCTCCAGCCTTaGCACCCGGGGCTGCAGGTG +
Preference number: 4 (lower is better)
Translates to: ILRTSSNSSEDWMSQLEQLLLQP*HPGLQV
Trigger: CACCTGCAGCCCCGGGTGGCAAGGCTGGAGCAGCAG...CTGCTCCAGCTGGGACATCCAGTCCTCGCTGCTGTTGCTGCTAGTTCGAAGGAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR GCA 90 bp CGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCCTGGCCGTCCTCCTCACTGCTGTaGTGGTCCTCATATGTCTCC +
Preference number: 4 (lower is better)
Translates to: RSVRLLWRSQVLVSSPWPSSSLL*WSSYVS
Trigger: GGAGACATATGAGGACCAGCACAGCAGTGAGGAGGA...CGGCCAGGGAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CCA 90 bp CACGGCGGCATCCTTCGAACTAGCAGCAACAGCAGCGAGGACTGGATGTCCCAGGGCTGGGCAGCCATGTaGTTGGCATGTTCCACGGGG +
Preference number: 4 (lower is better)
Translates to: HGGILRTSSNSSEDWMSQGWAAM*LACSTG
Trigger: CCCCGTGGAACATGCCAACCACATGGCTGCCCAGCC...CTGGGACATCCAGTCCTCGCTGCTGTTGCTGCTAGTTCGAAGGATGCCGCCGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR CCA 90 bp CCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCCTGGCCCAAACGGGTGAGGATTaGCCAGGTTGTGACCAGACA +
Preference number: 4 (lower is better)
Translates to: PLSAASLEVPGAGVLSLAQTGED*PGCDQT
Trigger: TGTCTGGTCACAACCTGGCCAATCCTCACCCGTTTG...GGCCAGGGAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR TCA 90 bp CAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCCGGATTGGCCAGGTTGTaGCCAGACAGGTCCACAAAG +
Preference number: 4 (lower is better)
Translates to: QVRSVRLLWRSQVLVSSPGLARL*PDRSTK
Trigger: CTTTGTGGACCTGTCTGGTCACAACCTGGCCAATCC...GGGAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR TCA 90 bp CGACAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCAGACTCGGCACTGGTaGTGTCTTCCTCTTCCTCCC +
Preference number: 4 (lower is better)
Translates to: RQVRSVRLLWRSQVLVSSQTRHW*CLPLPP
Trigger: GGGAGGAAGAGGAAGACATCACCAGTGCCGAGTCTG...AGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTGTCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR GCA 90 bp CGACAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTGGAGGAAAACTAGCCTaGACCCGTGGACGTAGAGCG +
Preference number: 4 (lower is better)
Translates to: RQVRSVRLLWRSQVLVSSGGKLA*TRGRRA
Trigger: CGCTCTACGTCCACGGGTGCAGGCTAGTTTTCCTCC...AGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTGTCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR GCA 90 bp GACAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCGGAGGAAAACTAGCCTaGACCCGTGGACGTAGAGCG +
Preference number: 4 (lower is better)
Translates to: DKSAQCGFSGGPRCWCPLGGKLA*TRGRRA
Trigger: CGCTCTACGTCCACGGGTGCAGGCTAGTTTTCCTCC...GAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR GCA 90 bp CCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCCTGGCCCAGGCTCAGTCTCATTaGCACTCTCCACTCCTGAAT +
Preference number: 4 (lower is better)
Translates to: PLSAASLEVPGAGVLSLAQAQSH*HSPLLN
Trigger: ATTCAGGAGTGGAGAGTGGCAATGAGACTGAGCCTG...GGCCAGGGAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR GCA 90 bp CGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCCTGGCCGCAGGTGTCCAGGTCATaGACAATTTCCTCTGACACC +
Preference number: 4 (lower is better)
Translates to: RSVRLLWRSQVLVSSPWPQVSRS*TISSDT
Trigger: GGTGTCAGAGGAAATTGTGCATGACCTGGACACCTG...CGGCCAGGGAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR GCA 90 bp GACAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCAGGCTCTCCTGCTCTaGGTTCAGCTCATCCCCTTC +
Preference number: 4 (lower is better)
Translates to: DKSAQCGFSGGPRCWCPLQALLL*VQLIPF
Trigger: GAAGGGGATGAGCTGAACGCAGAGCAGGAGAGCCTG...GAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR GCA 90 bp CACGGCGGCATCCTTCGAACTAGCAGCAACAGCAGCGAGGACTGGATGTCCCAGGCTTCGATGCCCTTCTaGTGGAGGCGGGTCACGTCT +
Preference number: 4 (lower is better)
Translates to: HGGILRTSSNSSEDWMSQASMPF*WRRVTS
Trigger: AGACGTGACCCGCCTCCAGCAGAAGGGCATCGAAGC...CTGGGACATCCAGTCCTCGCTGCTGTTGCTGCTAGTTCGAAGGATGCCGCCGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR GCA 90 bp CACGGCGGCATCCTTCGAACTAGCAGCAACAGCAGCGAGGACTGGATGTCCCAGAGTGGCTTGCTTCGATaGCCTTCTGCTGGAGGCGGG +
Preference number: 4 (lower is better)
Translates to: HGGILRTSSNSSEDWMSQSGLLR*PSAGGG
Trigger: CCCGCCTCCAGCAGAAGGGCATCGAAGCAAGCCACT...CTGGGACATCCAGTCCTCGCTGCTGTTGCTGCTAGTTCGAAGGATGCCGCCGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR GCA 90 bp CGACAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCTTCCTCCTCCTCACTaGTCTCAGACTCGGCACTGG +
Preference number: 4 (lower is better)
Translates to: RQVRSVRLLWRSQVLVSSLPPPH*SQTRHW
Trigger: CCAGTGCCGAGTCTGAGAGCAGTGAGGAGGAGGAAG...AGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTGTCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR GCA 90 bp GACAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCTTCCTCCTCCTCACTaGTCTCAGACTCGGCACTGG +
Preference number: 4 (lower is better)
Translates to: DKSAQCGFSGGPRCWCPLLPPPH*SQTRHW
Trigger: CCAGTGCCGAGTCTGAGAGCAGTGAGGAGGAGGAAG...GAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CCA 90 bp CGACAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCTTTCCCTATGTGGCTaGTCTCCAGCTCCACCGTGG +
Preference number: 4 (lower is better)
Translates to: RQVRSVRLLWRSQVLVSSLSLCG*SPAPPW
Trigger: CCACGGTGGAGCTGGAGACCAGCCACATAGGGAAAG...AGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTGTCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CCA 90 bp CGACAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCAGCCTTTCCCTATGTaGCTGGTCTCCAGCTCCACC +
Preference number: 4 (lower is better)
Translates to: RQVRSVRLLWRSQVLVSSQPFPM*LVSSST
Trigger: GGTGGAGCTGGAGACCAGCCACATAGGGAAAGGCTG...AGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTGTCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CCA 90 bp GCCTCGGGGTCTCCTTTTGGTGCTGTTGTGCAGACTTGCTCAGAACCGTGGTCTGCTGCGCGGGCAAAGTaGTGGACGCCACTCAGGCTG +
Preference number: 4 (lower is better)
Translates to: ASGSPFGAVVQTCSEPWSAARAK*WTPLRL
Trigger: CAGCCTGAGTGGCGTCCACCACTTTGCCCGCGCAGC...AGACCACGGTTCTGAGCAAGTCTGCACAACAGCACCAAAAGGAGACCCCGAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR CCA 90 bp CCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCCTGGCCCATGTTCCACGGGGTTaGCTGTGTGGATCACATTCA +
Preference number: 4 (lower is better)
Translates to: PLSAASLEVPGAGVLSLAHVPRG*LCGSHS
Trigger: TGAATGTGATCCACACAGCCAACCCCGTGGAACATG...GGCCAGGGAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CCA 90 bp GTCCCACACACCAAGCACGGGAGGACTTTGAGCAGTGGGGGAAGGGTCTGCAGAGGGCAGCCATGTGGTTaGCATGTTCCACGGGGTTGG +
Preference number: 4 (lower is better)
Translates to: VPHTKHGRTLSSGGRVCRGQPCG*HVPRGW
Trigger: CCAACCCCGTGGAACATGCCAACCACATGGCTGCCC...TCTGCAGACCCTTCCCCCACTGCTCAAAGTCCTCCCGTGCTTGGTGTGTGGGAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CCA 90 bp CGACAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTTGGACGAACTGTGGCTaGGCAGCCATGTGGTTGGCA +
Preference number: 4 (lower is better)
Translates to: RQVRSVRLLWRSQVLVSSWTNCG*AAMWLA
Trigger: TGCCAACCACATGGCTGCCCAGCCACAGTTCGTCCA...AGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTGTCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR TCA 90 bp GACAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCTGTACGACTTCTCCTTaGACACGGGGGCGTACTCGT +
Preference number: 4 (lower is better)
Translates to: DKSAQCGFSGGPRCWCPLCTTSP*TRGRTR
Trigger: ACGAGTACGCCCCCGTGTTCAAGGAGAAGTCGTACA...GAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR TCA 90 bp ATCCTTCGAACTAGCAGCAACAGCAGCGAGGACTGGATGTCCCAGCTGGAGCAGCCACAGCCTCCACCCTaGGGATGCTGCTGTGCTGCT +
Preference number: 4 (lower is better)
Translates to: ILRTSSNSSEDWMSQLEQPQPPP*GCCCAA
Trigger: AGCAGCACAGCAGCATCCTCAGGGTGGAGGCTGTGG...CTGCTCCAGCTGGGACATCCAGTCCTCGCTGCTGTTGCTGCTAGTTCGAAGGAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR TCA 90 bp CGACAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTGGATTGGCCAGGTTGTaGCCAGACAGGTCCACAAAG +
Preference number: 4 (lower is better)
Translates to: RQVRSVRLLWRSQVLVSSGLARL*PDRSTK
Trigger: CTTTGTGGACCTGTCTGGTCACAACCTGGCCAATCC...AGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTGTCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR TCA 90 bp GTCCCACACACCAAGCACGGGAGGACTTTGAGCAGTGGGGGAAGGGTCTGCAGACAGACTCGGCACTGGTaGTGTCTTCCTCTTCCTCCC +
Preference number: 4 (lower is better)
Translates to: VPHTKHGRTLSSGGRVCRQTRHW*CLPLPP
Trigger: GGGAGGAAGAGGAAGACATCACCAGTGCCGAGTCTG...TCTGCAGACCCTTCCCCCACTGCTCAAAGTCCTCCCGTGCTTGGTGTGTGGGAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR GCA 90 bp TTTGGTGCTGTTGTGCAGACTTGCTCAGAACCGTGGTCTTCCAAGCGAGGAGCCCTGCGGGGAGCAGTCTaGGTCCACAGCCTCCACCCT +
Preference number: 4 (lower is better)
Translates to: FGAVVQTCSEPWSSKRGALRGAV*VHSLHP
Trigger: AGGGTGGAGGCTGTGGACGCAGACTGCTCCCCGCAG...GGCTCCTCGCTTGGAAGACCACGGTTCTGAGCAAGTCTGCACAACAGCACCAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR GCA 90 bp GACAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCGGAATCCTCACGGCCTaGGTGCCGTTGAACTCAAAG +
Preference number: 4 (lower is better)
Translates to: DKSAQCGFSGGPRCWCPLGILTA*VPLNSK
Trigger: CTTTGAGTTCAACGGCACGCAGGCCGTGAGGATTCC...GAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR GCA 90 bp CGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCCTGGCCGTTGAGGACAAAGTGGTaGCAGTCCTCATCACAGACT +
Preference number: 4 (lower is better)
Translates to: RSVRLLWRSQVLVSSPWPLRTKW*QSSSQT
Trigger: AGTCTGTGATGAGGACTGGCACCACTTTGTCCTCAA...CGGCCAGGGAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CCA 90 bp CAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCCTGGTTCAGCTTCCAGTaGAACTCCGCAGGCCTGTAT +
Preference number: 4 (lower is better)
Translates to: QVRSVRLLWRSQVLVSSPWFSFQ*NSAGLY
Trigger: ATACAGGCCTGCGGAGTTCCACTGGAAGCTGAACCA...GGGAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CCA 90 bp CCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCCTGGCCTCCTCATCACAGACTTaGTTCAGCTTCCAGTGGAAC +
Preference number: 4 (lower is better)
Translates to: PLSAASLEVPGAGVLSLASSSQT*FSFQWN
Trigger: GTTCCACTGGAAGCTGAACCAAGTCTGTGATGAGGA...GGCCAGGGAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CCA 90 bp CGACAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTACACCCAGGTCAGAGTaGCTTGCTTCGATGCCCTTC +
Preference number: 4 (lower is better)
Translates to: RQVRSVRLLWRSQVLVSSTPRSE*LASMPF
Trigger: GAAGGGCATCGAAGCAAGCCACTCTGACCTGGGTGT...AGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTGTCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CCA 90 bp AAGAAAGCAGCTACAGGGGACAGGACATGGGAGGGCGGCCACAGACAGCACGGCACACCCAGGTCAGAGTaGCTTGCTTCGATGCCCTTC +
Preference number: 4 (lower is better)
Translates to: KKAATGDRTWEGGHRQHGTPRSE*LASMPF
Trigger: GAAGGGCATCGAAGCAAGCCACTCTGACCTGGGTGT...GCCGTGCTGTCTGTGGCCGCCCTCCCATGTCCTGTCCCCTGTAGCTGCTTTCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR CCA 90 bp GACAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCGATCGATGTTCAGGGTaGACGAACTGTGGCTGGGCA +
Preference number: 4 (lower is better)
Translates to: DKSAQCGFSGGPRCWCPLDRCSG*TNCGWA
Trigger: TGCCCAGCCACAGTTCGTCCACCCTGAACATCGATC...GAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR GCA 90 bp GTCCCACACACCAAGCACGGGAGGACTTTGAGCAGTGGGGGAAGGGTCTGCAGAGGTCCAGCCCCTCCTTaGAGGTGTAGAGACAGTCAA +
Preference number: 4 (lower is better)
Translates to: VPHTKHGRTLSSGGRVCRGPAPP*RCRDSQ
Trigger: TTGACTGTCTCTACACCTGCAAGGAGGGGCTGGACC...TCTGCAGACCCTTCCCCCACTGCTCAAAGTCCTCCCGTGCTTGGTGTGTGGGAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR GCA 90 bp GTCCCACACACCAAGCACGGGAGGACTTTGAGCAGTGGGGGAAGGGTCTGCAGACAGGTCAGAGTGGCTTaGTTCGATGCCCTTCTGCTG +
Preference number: 4 (lower is better)
Translates to: VPHTKHGRTLSSGGRVCRQVRVA*FDALLL
Trigger: CAGCAGAAGGGCATCGAAGCAAGCCACTCTGACCTG...TCTGCAGACCCTTCCCCCACTGCTCAAAGTCCTCCCGTGCTTGGTGTGTGGGAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR GCA 90 bp GACAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCTCCTCCTCACTGCTGTaGTGGTCCTCATATGTCTCC +
Preference number: 4 (lower is better)
Translates to: DKSAQCGFSGGPRCWCPLSSSLL*WSSYVS
Trigger: GGAGACATATGAGGACCAGCACAGCAGTGAGGAGGA...GAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CCA 90 bp CAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCCTTATTCCCTCACCCGTaGACTTATCCACTACCACGG +
Preference number: 4 (lower is better)
Translates to: QVRSVRLLWRSQVLVSSPLFPHP*TYPLPR
Trigger: CCGTGGTAGTGGATAAGTCCACGGGTGAGGGAATAA...GGGAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CCA 90 bp GACAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCTAGGACGTCCTCGGTaGCTCTTTTCTTCCCACAGT +
Preference number: 4 (lower is better)
Translates to: DKSAQCGFSGGPRCWCPLLGRPR*LFSSHS
Trigger: ACTGTGGGAAGAAAAGAGCCACCGAGGACGTCCTAG...GAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CCA 90 bp TCTTTGGGCCTCGGGGTCTCCTTTTGGTGCTGTTGTGCAGACTTGCTCAGAACCTCTCCAGCTCCACCGTaGCCTGCACAGAGGCGACAG +
Preference number: 4 (lower is better)
Translates to: SLGLGVSFWCCCADLLRTSPAPP*PAQRRQ
Trigger: CTGTCGCCTCTGTGCAGGCCACGGTGGAGCTGGAGA...GGTTCTGAGCAAGTCTGCACAACAGCACCAAAAGGAGACCCCGAGGCCCAAAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR CCA 90 bp ATCCTTCGAACTAGCAGCAACAGCAGCGAGGACTGGATGTCCCAGCTGGAGCAGTCGATGCCCTTCTGCTaGAGGCGGGTCACGTCTACC +
Preference number: 4 (lower is better)
Translates to: ILRTSSNSSEDWMSQLEQSMPFC*RRVTST
Trigger: GGTAGACGTGACCCGCCTCCAGCAGAAGGGCATCGA...CTGCTCCAGCTGGGACATCCAGTCCTCGCTGCTGTTGCTGCTAGTTCGAAGGAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR CCA 90 bp GCCTCGGGGTCTCCTTTTGGTGCTGTTGTGCAGACTTGCTCAGAACCGTGGTCTGGGCAGCCATGTGGTTaGCATGTTCCACGGGGTTGG +
Preference number: 4 (lower is better)
Translates to: ASGSPFGAVVQTCSEPWSGQPCG*HVPRGW
Trigger: CCAACCCCGTGGAACATGCCAACCACATGGCTGCCC...AGACCACGGTTCTGAGCAAGTCTGCACAACAGCACCAAAAGGAGACCCCGAGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR TCA 90 bp GACAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCGCTCCGACCACAAGCTaGGTCTCTATTTTGGTTGGA +
Preference number: 4 (lower is better)
Translates to: DKSAQCGFSGGPRCWCPLAPTTS*VSILVG
Trigger: TCCAACCAAAATAGAGACTCAGCTTGTGGTCGGAGC...GAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR TCA 90 bp TCTTTGGGCCTCGGGGTCTCCTTTTGGTGCTGTTGTGCAGACTTGCTCAGAACCTGGTCTCCACGCCTGTaGAGACCACACCCAGGTCAG +
Preference number: 4 (lower is better)
Translates to: SLGLGVSFWCCCADLLRTWSPRL*RPHPGQ
Trigger: CTGACCTGGGTGTGGTCTTCACAGGCGTGGAGACCA...GGTTCTGAGCAAGTCTGCACAACAGCACCAAAAGGAGACCCCGAGGCCCAAAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR TCA 90 bp CTCCTGGCCCCGCATTCTGACTTTACATTCCTGTCCTGGACTACTAGCACAGAGTCCCGCATCGTTCGCTaGTGTGCAGCCCGGATCCGA +
Preference number: 4 (lower is better)
Translates to: LLAPHSDFTFLSWTTSTESRIVR*CAARIR
Trigger: TCGGATCCGGGCTGCACATCAGCGAACGATGCGGGA...CTCTGTGCTAGTAGTCCAGGACAGGAATGTAAAGTCAGAATGCGGGGCCAGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR GCA 90 bp GAAGGGTCTGCAGACCTGCTGGTCAAAATGATTTTGTACATCGTGGACCCGTGGGGAGCAGCTCTGAGGTaGCGGCAGCAGCCCCACAGA +
Preference number: 4 (lower is better)
Translates to: EGSADLLVKMILYIVDPWGAALR*RQQPHR
Trigger: TCTGTGGGGCTGCTGCCGGCACCTCAGAGCTGCTCC...CCACGGGTCCACGATGTACAAAATCATTTTGACCAGCAGGTCTGCAGACCCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR GCA 90 bp CCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCCTGGCCCTGTCTTATCCGAACTaGAGAGAATTGTCTCCTTCT +
Preference number: 4 (lower is better)
Translates to: PLSAASLEVPGAGVLSLALSYPN*RELSPS
Trigger: AGAAGGAGACAATTCTCTGCAGTTCGGATAAGACAG...GGCCAGGGAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR GCA 90 bp CGACAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTAAAAACTGTGTCATGTaGAGGTCGCCACCTGCAGAG +
Preference number: 4 (lower is better)
Translates to: RQVRSVRLLWRSQVLVSSKNCVM*RSPPAE
Trigger: CTCTGCAGGTGGCGACCTGCACATGACACAGTTTTT...AGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTGTCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR GCA 90 bp GCCTCGGGGTCTCCTTTTGGTGCTGTTGTGCAGACTTGCTCAGAACCGTGGTCTCAGGCTCTCCTGCTCTaGGTTCAGCTCATCCCCTTC +
Preference number: 4 (lower is better)
Translates to: ASGSPFGAVVQTCSEPWSQALLL*VQLIPF
Trigger: GAAGGGGATGAGCTGAACGCAGAGCAGGAGAGCCTG...AGACCACGGTTCTGAGCAAGTCTGCACAACAGCACCAAAAGGAGACCCCGAGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR GCA 90 bp GAAACCATGTGGCTGCCAGTCACAGGCGTGTACAGGAAAGGCCAGGGGCTTTGGAACCTCCTCGTAGCTTaGCATGGTCTCCACGCCTGT +
Preference number: 4 (lower is better)
Translates to: ETMWLPVTGVYRKGQGLWNLLVA*HGLHAC
Trigger: ACAGGCGTGGAGACCATGGCAAGCTACGAGGAGGTT...CCAAAGCCCCTGGCCTTTCCTGTACACGCCTGTGACTGGCAGCCACATGGTTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR CCA 90 bp CAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCCACATTGAGGACAAAGTaGTGCCAGTCCTCATCACAG +
Preference number: 4 (lower is better)
Translates to: QVRSVRLLWRSQVLVSSPTLRTK*CQSSSQ
Trigger: CTGTGATGAGGACTGGCACCACTTTGTCCTCAATGT...GGGAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CCA 90 bp AAGAGGGAGGAAGAGGCCCTCCTGGCCCCGCATTCTGACTTTACATTCCTGTCCTGGACGAACTGTGGCTaGGCAGCCATGTGGTTGGCA +
Preference number: 4 (lower is better)
Translates to: KREEEALLAPHSDFTFLSWTNCG*AAMWLA
Trigger: TGCCAACCACATGGCTGCCCAGCCACAGTTCGTCCA...GGACAGGAATGTAAAGTCAGAATGCGGGGCCAGGAGGGCCTCTTCCTCCCTCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR TCA 90 bp GACAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCGTCCAGTTTCTCTTTTaGCCGGATTATTCCCTCACC +
Preference number: 4 (lower is better)
Translates to: DKSAQCGFSGGPRCWCPLVQFLF*PDYSLT
Trigger: GGTGAGGGAATAATCCGGTCAAAAGAGAAACTGGAC...GAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR TCA 90 bp GACAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCTTGGAACTTCCACATTaGGGACAAAGTGGTGCCAGT +
Preference number: 4 (lower is better)
Translates to: DKSAQCGFSGGPRCWCPLLELPH*GQSGAS
Trigger: ACTGGCACCACTTTGTCCTCAATGTGGAAGTTCCAA...GAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR TCA 90 bp GTCCCACACACCAAGCACGGGAGGACTTTGAGCAGTGGGGGAAGGGTCTGCAGAGCTCCGACCACAAGCTaGGTCTCTATTTTGGTTGGA +
Preference number: 4 (lower is better)
Translates to: VPHTKHGRTLSSGGRVCRAPTTS*VSILVG
Trigger: TCCAACCAAAATAGAGACTCAGCTTGTGGTCGGAGC...TCTGCAGACCCTTCCCCCACTGCTCAAAGTCCTCCCGTGCTTGGTGTGTGGGAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR GCA 90 bp ATCCTTCGAACTAGCAGCAACAGCAGCGAGGACTGGATGTCCCAGCTGGAGCAGCAGGTCAGAGTGGCTTaGTTCGATGCCCTTCTGCTG +
Preference number: 4 (lower is better)
Translates to: ILRTSSNSSEDWMSQLEQQVRVA*FDALLL
Trigger: CAGCAGAAGGGCATCGAAGCAAGCCACTCTGACCTG...CTGCTCCAGCTGGGACATCCAGTCCTCGCTGCTGTTGCTGCTAGTTCGAAGGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR CCA 90 bp CAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCCGCTGAGTCTCTATTTTaGTTGGATGAAGCGGGTAGT +
Preference number: 4 (lower is better)
Translates to: QVRSVRLLWRSQVLVSSPAESLF*LDEAGS
Trigger: ACTACCCGCTTCATCCAACCAAAATAGAGACTCAGC...GGGAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR TCA 90 bp CGACAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTGGGACATTCTGCCCGTaGATTTTAAAGCCACAAATC +
Preference number: 4 (lower is better)
Translates to: RQVRSVRLLWRSQVLVSSGTFCP*ILKPQI
Trigger: GATTTGTGGCTTTAAAATTCACGGGCAGAATGTCCC...AGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTGTCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR TCA 90 bp TCTTTGGGCCTCGGGGTCTCCTTTTGGTGCTGTTGTGCAGACTTGCTCAGAACCGGCTGCAGGTGGGCTTaGCGCTTATCTTCACTAGGA +
Preference number: 4 (lower is better)
Translates to: SLGLGVSFWCCCADLLRTGCRWA*RLSSLG
Trigger: TCCTAGTGAAGATAAGCGTCAAGCCCACCTGCAGCC...GGTTCTGAGCAAGTCTGCACAACAGCACCAAAAGGAGACCCCGAGGCCCAAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR GCA 90 bp TACAGGAAAGGCCAGGGGCTTTGGCAACATCCTGGCTGTTCCCAGCCTCTAATGGGAATCCTCACGGCCTaGGTGCCGTTGAACTCAAAG +
Preference number: 4 (lower is better)
Translates to: YRKGQGLWQHPGCSQPLMGILTA*VPLNSK
Trigger: CTTTGAGTTCAACGGCACGCAGGCCGTGAGGATTCC...CATTAGAGGCTGGGAACAGCCAGGATGTTGCCAAAGCCCCTGGCCTTTCCTGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR GCA 90 bp GAAGGGTCTGCAGACCTGCTGGTCAAAATGATTTTGTACATCGTGGACCCGTGGAGTGGCTTGCTTCGATaGCCTTCTGCTGGAGGCGGG +
Preference number: 4 (lower is better)
Translates to: EGSADLLVKMILYIVDPWSGLLR*PSAGGG
Trigger: CCCGCCTCCAGCAGAAGGGCATCGAAGCAAGCCACT...CCACGGGTCCACGATGTACAAAATCATTTTGACCAGCAGGTCTGCAGACCCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CCA 90 bp GAAGGGTCTGCAGACCTGCTGGTCAAAATGATTTTGTACATCGTGGACCCGTGGACCTGGTCACTGTCATaGCCGTTGTCGGTGGGGAGG +
Preference number: 4 (lower is better)
Translates to: EGSADLLVKMILYIVDPWTWSLS*PLSVGR
Trigger: CCTCCCCACCGACAACGGCCATGACAGTGACCAGGT...CCACGGGTCCACGATGTACAAAATCATTTTGACCAGCAGGTCTGCAGACCCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CCA 90 bp GTCCCACACACCAAGCACGGGAGGACTTTGAGCAGTGGGGGAAGGGTCTGCAGATTGAACTCAAAGACCTaGTCACTGTCATGGCCGTTG +
Preference number: 4 (lower is better)
Translates to: VPHTKHGRTLSSGGRVCRLNSKT*SLSWPL
Trigger: CAACGGCCATGACAGTGACCAGGTCTTTGAGTTCAA...TCTGCAGACCCTTCCCCCACTGCTCAAAGTCCTCCCGTGCTTGGTGTGTGGGAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CCA 90 bp TCTTTGGGCCTCGGGGTCTCCTTTTGGTGCTGTTGTGCAGACTTGCTCAGAACCTCTGCACGCCTCTGTTaGCATCTTCAGGGACCTGCA +
Preference number: 4 (lower is better)
Translates to: SLGLGVSFWCCCADLLRTSARLC*HLQGPA
Trigger: TGCAGGTCCCTGAAGATGCCAACAGAGGCGTGCAGA...GGTTCTGAGCAAGTCTGCACAACAGCACCAAAAGGAGACCCCGAGGCCCAAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR GCA 90 bp GACTTTACATTCCTGTCCTGGACTACTAGCACAGAGGACACACAGAATCCCAATTGCTGCTGTGCTGCTTaGCCTCCACCACGGCCGCCT +
Preference number: 4 (lower is better)
Translates to: DFTFLSWTTSTEDTQNPNCCCAA*PPPRPP
Trigger: AGGCGGCCGTGGTGGAGGGCAAGCAGCACAGCAGCA...ATTGGGATTCTGTGTGTCCTCTGTGCTAGTAGTCCAGGACAGGAATGTAAAGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR GCA 90 bp CTCCTGGCCCCGCATTCTGACTTTACATTCCTGTCCTGGACTACTAGCACAGAGCATACTCAATTCTGCTaGTCCAGCCTTGCCACCCGG +
Preference number: 4 (lower is better)
Translates to: LLAPHSDFTFLSWTTSTEHTQFC*SSLATR
Trigger: CCGGGTGGCAAGGCTGGAGCAGCAGAATTGAGTATG...CTCTGTGCTAGTAGTCCAGGACAGGAATGTAAAGTCAGAATGCGGGGCCAGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR GCA 90 bp AAGTCGGTTGGCCATCTACATATTAACCCCCTCTGCTCTCCCACTTTATACATGGGAGCAGCTCTGAGGTaGCGGCAGCAGCCCCACAGA +
Preference number: 4 (lower is better)
Translates to: KSVGHLHINPLCSPTLYMGAALR*RQQPHR
Trigger: TCTGTGGGGCTGCTGCCGGCACCTCAGAGCTGCTCC...CATGTATAAAGTGGGAGAGCAGAGGGGGTTAATATGTAGATGGCCAACCGACTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR GCA 90 bp GCCTCGGGGTCTCCTTTTGGTGCTGTTGTGCAGACTTGCTCAGAACCGTGGTCTAAAAACTGTGTCATGTaGAGGTCGCCACCTGCAGAG +
Preference number: 4 (lower is better)
Translates to: ASGSPFGAVVQTCSEPWSKNCVM*RSPPAE
Trigger: CTCTGCAGGTGGCGACCTGCACATGACACAGTTTTT...AGACCACGGTTCTGAGCAAGTCTGCACAACAGCACCAAAAGGAGACCCCGAGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR GCA 90 bp ATCCTTCGAACTAGCAGCAACAGCAGCGAGGACTGGATGTCCCAGCTGGAGCAGCAGGTGTCCAGGTCATaGACAATTTCCTCTGACACC +
Preference number: 4 (lower is better)
Translates to: ILRTSSNSSEDWMSQLEQQVSRS*TISSDT
Trigger: GGTGTCAGAGGAAATTGTGCATGACCTGGACACCTG...CTGCTCCAGCTGGGACATCCAGTCCTCGCTGCTGTTGCTGCTAGTTCGAAGGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR GCA 90 bp GAAGGGTCTGCAGACCTGCTGGTCAAAATGATTTTGTACATCGTGGACCCGTGGACCTCCAGGCTCTCCTaGTCTGCGTTCAGCTCATCC +
Preference number: 4 (lower is better)
Translates to: EGSADLLVKMILYIVDPWTSRLS*SAFSSS
Trigger: GGATGAGCTGAACGCAGAGCAGGAGAGCCTGGAGGT...CCACGGGTCCACGATGTACAAAATCATTTTGACCAGCAGGTCTGCAGACCCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CCA 90 bp AAGAGGGAGGAAGAGGCCCTCCTGGCCCCGCATTCTGACTTTACATTCCTGTCCTTATTCCCTCACCCGTaGACTTATCCACTACCACGG +
Preference number: 4 (lower is better)
Translates to: KREEEALLAPHSDFTFLSLFPHP*TYPLPR
Trigger: CCGTGGTAGTGGATAAGTCCACGGGTGAGGGAATAA...GGACAGGAATGTAAAGTCAGAATGCGGGGCCAGGAGGGCCTCTTCCTCCCTCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR CCA 90 bp GAAGGGTCTGCAGACCTGCTGGTCAAAATGATTTTGTACATCGTGGACCCGTGGCAGCCTTTCCCTATGTaGCTGGTCTCCAGCTCCACC +
Preference number: 4 (lower is better)
Translates to: EGSADLLVKMILYIVDPWQPFPM*LVSSST
Trigger: GGTGGAGCTGGAGACCAGCCACATAGGGAAAGGCTG...CCACGGGTCCACGATGTACAAAATCATTTTGACCAGCAGGTCTGCAGACCCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CCA 90 bp GAAACCATGTGGCTGCCAGTCACAGGCGTGTACAGGAAAGGCCAGGGGCTTTGGTCCTCATCACAGACTTaGTTCAGCTTCCAGTGGAAC +
Preference number: 4 (lower is better)
Translates to: ETMWLPVTGVYRKGQGLWSSSQT*FSFQWN
Trigger: GTTCCACTGGAAGCTGAACCAAGTCTGTGATGAGGA...CCAAAGCCCCTGGCCTTTCCTGTACACGCCTGTGACTGGCAGCCACATGGTTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR TCA 90 bp GAAACCATGTGGCTGCCAGTCACAGGCGTGTACAGGAAAGGCCAGGGGCTTTGGGGGACATTCTGCCCGTaGATTTTAAAGCCACAAATC +
Preference number: 4 (lower is better)
Translates to: ETMWLPVTGVYRKGQGLWGTFCP*ILKPQI
Trigger: GATTTGTGGCTTTAAAATTCACGGGCAGAATGTCCC...CCAAAGCCCCTGGCCTTTCCTGTACACGCCTGTGACTGGCAGCCACATGGTTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR TCA 90 bp GAAGGGTCTGCAGACCTGCTGGTCAAAATGATTTTGTACATCGTGGACCCGTGGGGCTGCAGGTGGGCTTaGCGCTTATCTTCACTAGGA +
Preference number: 4 (lower is better)
Translates to: EGSADLLVKMILYIVDPWGCRWA*RLSSLG
Trigger: TCCTAGTGAAGATAAGCGTCAAGCCCACCTGCAGCC...CCACGGGTCCACGATGTACAAAATCATTTTGACCAGCAGGTCTGCAGACCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR TCA 90 bp ATCCTTCGAACTAGCAGCAACAGCAGCGAGGACTGGATGTCCCAGCTGGAGCAGTTGGAACTTCCACATTaGGGACAAAGTGGTGCCAGT +
Preference number: 4 (lower is better)
Translates to: ILRTSSNSSEDWMSQLEQLELPH*GQSGAS
Trigger: ACTGGCACCACTTTGTCCTCAATGTGGAAGTTCCAA...CTGCTCCAGCTGGGACATCCAGTCCTCGCTGCTGTTGCTGCTAGTTCGAAGGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR GCA 90 bp GAAGGGTCTGCAGACCTGCTGGTCAAAATGATTTTGTACATCGTGGACCCGTGGCATACTCAATTCTGCTaGTCCAGCCTTGCCACCCGG +
Preference number: 4 (lower is better)
Translates to: EGSADLLVKMILYIVDPWHTQFC*SSLATR
Trigger: CCGGGTGGCAAGGCTGGAGCAGCAGAATTGAGTATG...CCACGGGTCCACGATGTACAAAATCATTTTGACCAGCAGGTCTGCAGACCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CCA 90 bp GAAGGGTCTGCAGACCTGCTGGTCAAAATGATTTTGTACATCGTGGACCCGTGGGGTGGGCTCGAGCCATaGCTTGTGCTTGTTAACTCG +
Preference number: 4 (lower is better)
Translates to: EGSADLLVKMILYIVDPWGGLEP*LVLVNS
Trigger: CGAGTTAACAAGCACAAGCCATGGCTCGAGCCCACC...CCACGGGTCCACGATGTACAAAATCATTTTGACCAGCAGGTCTGCAGACCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CCA 90 bp AAGAGGGAGGAAGAGGCCCTCCTGGCCCCGCATTCTGACTTTACATTCCTGTCCTTGAACTCAAAGACCTaGTCACTGTCATGGCCGTTG +
Preference number: 4 (lower is better)
Translates to: KREEEALLAPHSDFTFLSLNSKT*SLSWPL
Trigger: CAACGGCCATGACAGTGACCAGGTCTTTGAGTTCAA...GGACAGGAATGTAAAGTCAGAATGCGGGGCCAGGAGGGCCTCTTCCTCCCTCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR CCA 90 bp CTCCTGGCCCCGCATTCTGACTTTACATTCCTGTCCTGGACTACTAGCACAGAGTGGTTCAGCTTCCAGTaGAACTCCGCAGGCCTGTAT +
Preference number: 4 (lower is better)
Translates to: LLAPHSDFTFLSWTTSTEWFSFQ*NSAGLY
Trigger: ATACAGGCCTGCGGAGTTCCACTGGAAGCTGAACCA...CTCTGTGCTAGTAGTCCAGGACAGGAATGTAAAGTCAGAATGCGGGGCCAGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR CCA 90 bp GAAGGGTCTGCAGACCTGCTGGTCAAAATGATTTTGTACATCGTGGACCCGTGGTCTGCACGCCTCTGTTaGCATCTTCAGGGACCTGCA +
Preference number: 4 (lower is better)
Translates to: EGSADLLVKMILYIVDPWSARLC*HLQGPA
Trigger: TGCAGGTCCCTGAAGATGCCAACAGAGGCGTGCAGA...CCACGGGTCCACGATGTACAAAATCATTTTGACCAGCAGGTCTGCAGACCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CCA 90 bp TTTGGTGCTGTTGTGCAGACTTGCTCAGAACCGTGGTCTTCCAAGCGAGGAGCCCATGTTCCACGGGGTTaGCTGTGTGGATCACATTCA +
Preference number: 4 (lower is better)
Translates to: FGAVVQTCSEPWSSKRGAHVPRG*LCGSHS
Trigger: TGAATGTGATCCACACAGCCAACCCCGTGGAACATG...GGCTCCTCGCTTGGAAGACCACGGTTCTGAGCAAGTCTGCACAACAGCACCAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR CCA 90 bp GAAGGGTCTGCAGACCTGCTGGTCAAAATGATTTTGTACATCGTGGACCCGTGGGATCGATGTTCAGGGTaGACGAACTGTGGCTGGGCA +
Preference number: 4 (lower is better)
Translates to: EGSADLLVKMILYIVDPWDRCSG*TNCGWA
Trigger: TGCCCAGCCACAGTTCGTCCACCCTGAACATCGATC...CCACGGGTCCACGATGTACAAAATCATTTTGACCAGCAGGTCTGCAGACCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CCA 90 bp CTCCTGGCCCCGCATTCTGACTTTACATTCCTGTCCTGGACTACTAGCACAGAGCAAACGGGTGAGGATTaGCCAGGTTGTGACCAGACA +
Preference number: 4 (lower is better)
Translates to: LLAPHSDFTFLSWTTSTEQTGED*PGCDQT
Trigger: TGTCTGGTCACAACCTGGCCAATCCTCACCCGTTTG...CTCTGTGCTAGTAGTCCAGGACAGGAATGTAAAGTCAGAATGCGGGGCCAGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR GCA 90 bp TCTTTGGGCCTCGGGGTCTCCTTTTGGTGCTGTTGTGCAGACTTGCTCAGAACCTTGAGGACAAAGTGGTaGCAGTCCTCATCACAGACT +
Preference number: 4 (lower is better)
Translates to: SLGLGVSFWCCCADLLRTLRTKW*QSSSQT
Trigger: AGTCTGTGATGAGGACTGGCACCACTTTGTCCTCAA...GGTTCTGAGCAAGTCTGCACAACAGCACCAAAAGGAGACCCCGAGGCCCAAAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR GCA 90 bp TCCTTTTGGTGCTGTTGTGCAGACTTGCTCAGAACCGTGGTCTTCCAAGCGAGGCAGGCTCAGTCTCATTaGCACTCTCCACTCCTGAAT +
Preference number: 4 (lower is better)
Translates to: SFWCCCADLLRTVVFQARQAQSH*HSPLLN
Trigger: ATTCAGGAGTGGAGAGTGGCAATGAGACTGAGCCTG...CCTCGCTTGGAAGACCACGGTTCTGAGCAAGTCTGCACAACAGCACCAAAAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR CCA 90 bp ATCCTTCGAACTAGCAGCAACAGCAGCGAGGACTGGATGTCCCAGCTGGAGCAGGCTGAGTCTCTATTTTaGTTGGATGAAGCGGGTAGT +
Preference number: 4 (lower is better)
Translates to: ILRTSSNSSEDWMSQLEQAESLF*LDEAGS
Trigger: ACTACCCGCTTCATCCAACCAAAATAGAGACTCAGC...CTGCTCCAGCTGGGACATCCAGTCCTCGCTGCTGTTGCTGCTAGTTCGAAGGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR GCA 90 bp AAGAGGGAGGAAGAGGCCCTCCTGGCCCCGCATTCTGACTTTACATTCCTGTCCCTGTCTTATCCGAACTaGAGAGAATTGTCTCCTTCT +
Preference number: 4 (lower is better)
Translates to: KREEEALLAPHSDFTFLSLSYPN*RELSPS
Trigger: AGAAGGAGACAATTCTCTGCAGTTCGGATAAGACAG...GGACAGGAATGTAAAGTCAGAATGCGGGGCCAGGAGGGCCTCTTCCTCCCTCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR GCA 90 bp GAAGGGTCTGCAGACCTGCTGGTCAAAATGATTTTGTACATCGTGGACCCGTGGACTCCTGAATACTCTTaGCAGCAAGCTCCGACCACA +
Preference number: 4 (lower is better)
Translates to: EGSADLLVKMILYIVDPWTPEYS*QQAPTT
Trigger: TGTGGTCGGAGCTTGCTGGCAAGAGTATTCAGGAGT...CCACGGGTCCACGATGTACAAAATCATTTTGACCAGCAGGTCTGCAGACCCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR TCA 90 bp GAAGGGTCTGCAGACCTGCTGGTCAAAATGATTTTGTACATCGTGGACCCGTGGGTCCAGTTTCTCTTTTaGCCGGATTATTCCCTCACC +
Preference number: 4 (lower is better)
Translates to: EGSADLLVKMILYIVDPWVQFLF*PDYSLT
Trigger: GGTGAGGGAATAATCCGGTCAAAAGAGAAACTGGAC...CCACGGGTCCACGATGTACAAAATCATTTTGACCAGCAGGTCTGCAGACCCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR GCA 90 bp AAGTCGGTTGGCCATCTACATATTAACCCCCTCTGCTCTCCCACTTTATACATGGGTCCAGCCCCTCCTTaGAGGTGTAGAGACAGTCAA +
Preference number: 4 (lower is better)
Translates to: KSVGHLHINPLCSPTLYMGPAPP*RCRDSQ
Trigger: TTGACTGTCTCTACACCTGCAAGGAGGGGCTGGACC...CATGTATAAAGTGGGAGAGCAGAGGGGGTTAATATGTAGATGGCCAACCGACTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR CCA 90 bp GAAGGGTCTGCAGACCTGCTGGTCAAAATGATTTTGTACATCGTGGACCCGTGGACATTGAGGACAAAGTaGTGCCAGTCCTCATCACAG +
Preference number: 4 (lower is better)
Translates to: EGSADLLVKMILYIVDPWTLRTK*CQSSSQ
Trigger: CTGTGATGAGGACTGGCACCACTTTGTCCTCAATGT...CCACGGGTCCACGATGTACAAAATCATTTTGACCAGCAGGTCTGCAGACCCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CCA 90 bp GACTTTACATTCCTGTCCTGGACTACTAGCACAGAGGACACACAGAATCCCAATGATCCAGCAGGGACCTaGTGTGCCAATTCCGATAGC +
Preference number: 4 (lower is better)
Translates to: DFTFLSWTTSTEDTQNPNDPAGT*CANSDS
Trigger: GCTATCGGAATTGGCACACCAGGTCCCTGCTGGATC...ATTGGGATTCTGTGTGTCCTCTGTGCTAGTAGTCCAGGACAGGAATGTAAAGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR CCA 90 bp TTAAAAATAAGAGAAATGGTTACTGACTGCGTGGGAGTAATTTTTCACCCTCTGGCGCGGGCAAAGTGGTaGACGCCACTCAGGCTGATC +
Preference number: 4 (lower is better)
Translates to: LKIREMVTDCVGVIFHPLARAKW*TPLRLI
Trigger: GATCAGCCTGAGTGGCGTCCACCACTTTGCCCGCGC...CAGAGGGTGAAAAATTACTCCCACGCAGTCAGTAACCATTTCTCTTATTTTTAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR CCA 90 bp TTAAAAATAAGAGAAATGGTTACTGACTGCGTGGGAGTAATTTTTCACCCTCTGACCTGGTCACTGTCATaGCCGTTGTCGGTGGGGAGG +
Preference number: 4 (lower is better)
Translates to: LKIREMVTDCVGVIFHPLTWSLS*PLSVGR
Trigger: CCTCCCCACCGACAACGGCCATGACAGTGACCAGGT...CAGAGGGTGAAAAATTACTCCCACGCAGTCAGTAACCATTTCTCTTATTTTTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR CCA 90 bp TTAAAAATAAGAGAAATGGTTACTGACTGCGTGGGAGTAATTTTTCACCCTCTGCTTTCCCTATGTGGCTaGTCTCCAGCTCCACCGTGG +
Preference number: 4 (lower is better)
Translates to: LKIREMVTDCVGVIFHPLLSLCG*SPAPPW
Trigger: CCACGGTGGAGCTGGAGACCAGCCACATAGGGAAAG...CAGAGGGTGAAAAATTACTCCCACGCAGTCAGTAACCATTTCTCTTATTTTTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR CAA 90 bp CCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCCTGGCCCCGCCTGGCTGGAGCTaGCTTGGATCTGCACGCCTC +
Preference number: 5 (lower is better)
Translates to: PLSAASLEVPGAGVLSLAPPGWS*LGSARL
Trigger: GAGGCGTGCAGATCCAAGCAAGCTCCAGCCAGGCGG...GGCCAGGGAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS TCA 90 bp GCCCACAGTCCAGTTGAAGGAGCTACTGGGGGACGGGAGCAGCTCTaGGGTGCCGGCAGCAGCCCCACAGAGCCGGTGAAGGGACTTCTC +
Preference number: 5 (lower is better)
Translates to: AHSPVEGATGGREQL*GAGSSPTEPVKGLL
Trigger: GAGAAGTCCCTTCACCGGCTCTGTGGGGCTGCTGCCGGCACCTCAGAGCTGCTCCCGTCCCCCAGTAGCTCCTTCAACTGGACTGTGGGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS TCA 90 bp GGTCACTGTCATGGCCGTTGTCGGTGGGGAGGCCCACAGTCCAGTTaGAGGAGCTACTGGGGGACGGGAGCAGCTCTGAGGTGCCGGCAG +
Preference number: 5 (lower is better)
Translates to: GHCHGRCRWGGPQSS*RSYWGTGAALRCRQ
Trigger: CTGCCGGCACCTCAGAGCTGCTCCCGTCCCCCAGTAGCTCCTTCAACTGGACTGTGGGCCTCCCCACCGACAACGGCCATGACAGTGACC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CAA 90 bp CCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCCTGGCCGGCTCGAGCCATGGCTaGTGCTTGTTAACTCGCGCG +
Preference number: 5 (lower is better)
Translates to: PLSAASLEVPGAGVLSLAGSSHG*CLLTRA
Trigger: CGCGCGAGTTAACAAGCACAAGCCATGGCTCGAGCC...GGCCAGGGAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CAA 90 bp CGACAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTATGCTGCTGTGCTGCTaGCCCTCCACCACGGCCGCC +
Preference number: 5 (lower is better)
Translates to: RQVRSVRLLWRSQVLVSSMLLCC*PSTTAA
Trigger: GGCGGCCGTGGTGGAGGGCAAGCAGCACAGCAGCAT...AGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTGTCG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CAA 90 bp CCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCCTGGCCGGGCTGCAGGTGGGCTaGACGCTTATCTTCACTAGG +
Preference number: 5 (lower is better)
Translates to: PLSAASLEVPGAGVLSLAGLQVG*TLIFTR
Trigger: CCTAGTGAAGATAAGCGTCAAGCCCACCTGCAGCCC...GGCCAGGGAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CAA 90 bp CCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCCTGGCCCTGGCTGGAGCTTGCTaGGATCTGCACGCCTCTGTT +
Preference number: 5 (lower is better)
Translates to: PLSAASLEVPGAGVLSLALAGAC*DLHASV
Trigger: AACAGAGGCGTGCAGATCCAAGCAAGCTCCAGCCAG...GGCCAGGGAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CAA 90 bp GACAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCCGCCTGGCTGGAGCTaGCTTGGATCTGCACGCCTC +
Preference number: 5 (lower is better)
Translates to: DKSAQCGFSGGPRCWCPLPPGWS*LGSARL
Trigger: GAGGCGTGCAGATCCAAGCAAGCTCCAGCCAGGCGG...GAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTGTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CAA 90 bp CCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCCTGGCCAAACCTCCTCGTAGCTaGCCATGGTCTCCACGCCTG +
Preference number: 5 (lower is better)
Translates to: PLSAASLEVPGAGVLSLAKPPRS*PWSPRL
Trigger: CAGGCGTGGAGACCATGGCAAGCTACGAGGAGGTTT...GGCCAGGGAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CAA 90 bp CCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCCTGGCCGCAGGCTCAGTCTCATaGCCACTCTCCACTCCTGAA +
Preference number: 5 (lower is better)
Translates to: PLSAASLEVPGAGVLSLAAGSVS*PLSTPE
Trigger: TTCAGGAGTGGAGAGTGGCAATGAGACTGAGCCTGC...GGCCAGGGAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS GCA 90 bp GAGCAGTCTGCGTCCACAGCCTCCACCCTGAGGATGCTGCTGTGCTaGTTGCCCTCCACCACGGCCGCCTTGTACGACTTCTCCTTGAAC +
Preference number: 5 (lower is better)
Translates to: EQSASTASTLRMLLC*LPSTTAALYDFSLN
Trigger: GTTCAAGGAGAAGTCGTACAAGGCGGCCGTGGTGGAGGGCAAGCAGCACAGCAGCATCCTCAGGGTGGAGGCTGTGGACGCAGACTGCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS GCA 90 bp GTGAAGACCACACCCAGGTCAGAGTGGCTTGCTTCGATGCCCTTCTaGTGGAGGCGGGTCACGTCTACCTCCAGGCTCTCCTGCTCTGCG +
Preference number: 5 (lower is better)
Translates to: VKTTPRSEWLASMPF*WRRVTSTSRLSCSA
Trigger: CGCAGAGCAGGAGAGCCTGGAGGTAGACGTGACCCGCCTCCAGCAGAAGGGCATCGAAGCAAGCCACTCTGACCTGGGTGTGGTCTTCAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CCA 90 bp CCGTCTGGAATCCTCACGGCCTGCGTGCCGTTGAACTCAAAGACCTaGTCACTGTCATGGCCGTTGTCGGTGGGGAGGCCCACAGTCCAG +
Preference number: 5 (lower is better)
Translates to: PSGILTACVPLNSKT*SLSWPLSVGRPTVQ
Trigger: CTGGACTGTGGGCCTCCCCACCGACAACGGCCATGACAGTGACCAGGTCTTTGAGTTCAACGGCACGCAGGCCGTGAGGATTCCAGACGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CAA 90 bp ATCCTTCGAACTAGCAGCAACAGCAGCGAGGACTGGATGTCCCAGCTGGAGCAGATGCTGCTGTGCTGCTaGCCCTCCACCACGGCCGCC +
Preference number: 5 (lower is better)
Translates to: ILRTSSNSSEDWMSQLEQMLLCC*PSTTAA
Trigger: GGCGGCCGTGGTGGAGGGCAAGCAGCACAGCAGCAT...CTGCTCCAGCTGGGACATCCAGTCCTCGCTGCTGTTGCTGCTAGTTCGAAGGAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR CAA 90 bp CCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCCTGGCCCCGAACTGCAGAGAATaGTCTCCTTCTTCCGGCCAA +
Preference number: 5 (lower is better)
Translates to: PLSAASLEVPGAGVLSLAPNCRE*SPSSGQ
Trigger: TTGGCCGGAAGAAGGAGACAATTCTCTGCAGTTCGG...GGCCAGGGAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CAA 90 bp CGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCCTGGCCGTATGTCTCCATGGGGTaGACGGTGATGGTCAAGGCA +
Preference number: 5 (lower is better)
Translates to: RSVRLLWRSQVLVSSPWPYVSMG*TVMVKA
Trigger: TGCCTTGACCATCACCGTCAACCCCATGGAGACATA...CGGCCAGGGAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS GCA 90 bp CTTCTGCTGGAGGCGGGTCACGTCTACCTCCAGGCTCTCCTGCTCTaGGTTCAGCTCATCCCCTTCCACTGTGACCTCACAGGTGTCCAG +
Preference number: 5 (lower is better)
Translates to: LLLEAGHVYLQALLL*VQLIPFHCDLTGVQ
Trigger: CTGGACACCTGTGAGGTCACAGTGGAAGGGGATGAGCTGAACGCAGAGCAGGAGAGCCTGGAGGTAGACGTGACCCGCCTCCAGCAGAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS GCA 90 bp ATGCCCTTCTGCTGGAGGCGGGTCACGTCTACCTCCAGGCTCTCCTaGTCTGCGTTCAGCTCATCCCCTTCCACTGTGACCTCACAGGTG +
Preference number: 5 (lower is better)
Translates to: MPFCWRRVTSTSRLS*SAFSSSPSTVTSQV
Trigger: CACCTGTGAGGTCACAGTGGAAGGGGATGAGCTGAACGCAGAGCAGGAGAGCCTGGAGGTAGACGTGACCCGCCTCCAGCAGAAGGGCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CCA 90 bp TCAAGACCGCCTGGCTGGAGCTTGCTTGGATCTGCACGCCTCTGTTaGCATCTTCAGGGACCTGCAGGTCCAGCCCCTCCTTGCAGGTGT +
Preference number: 5 (lower is better)
Translates to: SRPPGWSLLGSARLC*HLQGPAGPAPPCRC
Trigger: ACACCTGCAAGGAGGGGCTGGACCTGCAGGTCCCTGAAGATGCCAACAGAGGCGTGCAGATCCAAGCAAGCTCCAGCCAGGCGGTCTTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CCA 90 bp AAGACCACACCCAGGTCAGAGTGGCTTGCTTCGATGCCCTTCTGCTaGAGGCGGGTCACGTCTACCTCCAGGCTCTCCTGCTCTGCGTTC +
Preference number: 5 (lower is better)
Translates to: KTTPRSEWLASMPFC*RRVTSTSRLSCSAF
Trigger: GAACGCAGAGCAGGAGAGCCTGGAGGTAGACGTGACCCGCCTCCAGCAGAAGGGCATCGAAGCAAGCCACTCTGACCTGGGTGTGGTCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CAA 90 bp CGACAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTGGGCTGCAGGTGGGCTaGACGCTTATCTTCACTAGG +
Preference number: 5 (lower is better)
Translates to: RQVRSVRLLWRSQVLVSSGLQVG*TLIFTR
Trigger: CCTAGTGAAGATAAGCGTCAAGCCCACCTGCAGCCC...AGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTGTCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CAA 90 bp GACAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCATCTGCACGCCTCTGTaGGCATCTTCAGGGACCTGC +
Preference number: 5 (lower is better)
Translates to: DKSAQCGFSGGPRCWCPLICTPL*ASSGTC
Trigger: GCAGGTCCCTGAAGATGCCAACAGAGGCGTGCAGAT...GAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CAA 90 bp GACAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCACGGTGCTGGTGATTTaGAGCCTGCGGATGCCTGGT +
Preference number: 5 (lower is better)
Translates to: DKSAQCGFSGGPRCWCPLTVLVI*SLRMPG
Trigger: ACCAGGCATCCGCAGGCTCAAAATCACCAGCACCGT...GAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CAA 90 bp GACAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCCAGGTCAGAGTGGCTaGCTTCGATGCCCTTCTGCT +
Preference number: 5 (lower is better)
Translates to: DKSAQCGFSGGPRCWCPLPGQSG*LRCPSA
Trigger: AGCAGAAGGGCATCGAAGCAAGCCACTCTGACCTGG...GAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CAA 90 bp GACAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCAAACCTCCTCGTAGCTaGCCATGGTCTCCACGCCTG +
Preference number: 5 (lower is better)
Translates to: DKSAQCGFSGGPRCWCPLKPPRS*PWSPRL
Trigger: CAGGCGTGGAGACCATGGCAAGCTACGAGGAGGTTT...GAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS TCA 90 bp TGTGCTGCTTGCCCTCCACCACGGCCGCCTTGTACGACTTCTCCTTaGACACGGGGGCGTACTCGTTCACGTCGTTCACCTGGATGTGCA +
Preference number: 5 (lower is better)
Translates to: CAACPPPRPPCTTSP*TRGRTRSRRSPGCA
Trigger: TGCACATCCAGGTGAACGACGTGAACGAGTACGCCCCCGTGTTCAAGGAGAAGTCGTACAAGGCGGCCGTGGTGGAGGGCAAGCAGCACA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS TCA 90 bp CAAGGGTCACAACGCCGTCTGGAATCCTCACGGCCTGCGTGCCGTTaGACTCAAAGACCTGGTCACTGTCATGGCCGTTGTCGGTGGGGA +
Preference number: 5 (lower is better)
Translates to: QGSQRRLESSRPACR*TQRPGHCHGRCRWG
Trigger: TCCCCACCGACAACGGCCATGACAGTGACCAGGTCTTTGAGTTCAACGGCACGCAGGCCGTGAGGATTCCAGACGGCGTTGTGACCCTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS GCA 90 bp GCAGGTCGCCACCTGCAGAGGCCATCGTCGCAGGCTCAGTCTCATTaGCACTCTCCACTCCTGAATACTCTTGCCAGCAAGCTCCGACCA +
Preference number: 5 (lower is better)
Translates to: AGRHLQRPSSQAQSH*HSPLLNTLASKLRP
Trigger: TGGTCGGAGCTTGCTGGCAAGAGTATTCAGGAGTGGAGAGTGGCAATGAGACTGAGCCTGCGACGATGGCCTCTGCAGGTGGCGACCTGC
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CCA 90 bp CTCACGGCCTGCGTGCCGTTGAACTCAAAGACCTGGTCACTGTCATaGCCGTTGTCGGTGGGGAGGCCCACAGTCCAGTTGAAGGAGCTA +
Preference number: 5 (lower is better)
Translates to: LTACVPLNSKTWSLS*PLSVGRPTVQLKEL
Trigger: TAGCTCCTTCAACTGGACTGTGGGCCTCCCCACCGACAACGGCCATGACAGTGACCAGGTCTTTGAGTTCAACGGCACGCAGGCCGTGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CCA 90 bp ACGTTGTCTCCCTCCAAGGTCAAGACCGCCTGGCTGGAGCTTGCTTaGATCTGCACGCCTCTGTTGGCATCTTCAGGGACCTGCAGGTCC +
Preference number: 5 (lower is better)
Translates to: TLSPSKVKTAWLELA*ICTPLLASSGTCRS
Trigger: GGACCTGCAGGTCCCTGAAGATGCCAACAGAGGCGTGCAGATCCAAGCAAGCTCCAGCCAGGCGGTCTTGACCTTGGAGGGAGACAACGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CCA 90 bp ATACCCTCCGCGCTCTCAAACTCAGAAGCTGCGCGGGCAAAGTGGTaGACGCCACTCAGGCTGATCTTAGGCTCCTCCGGCTGCAAAACC +
Preference number: 5 (lower is better)
Translates to: IPSALSNSEAARAKW*TPLRLILGSSGCKT
Trigger: GGTTTTGCAGCCGGAGGAGCCTAAGATCAGCCTGAGTGGCGTCCACCACTTTGCCCGCGCAGCTTCTGAGTTTGAGAGCGCGGAGGGTAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CAA 90 bp CACGGCGGCATCCTTCGAACTAGCAGCAACAGCAGCGAGGACTGGATGTCCCAGATCTGCACGCCTCTGTaGGCATCTTCAGGGACCTGC +
Preference number: 5 (lower is better)
Translates to: HGGILRTSSNSSEDWMSQICTPL*ASSGTC
Trigger: GCAGGTCCCTGAAGATGCCAACAGAGGCGTGCAGAT...CTGGGACATCCAGTCCTCGCTGCTGTTGCTGCTAGTTCGAAGGATGCCGCCGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR CAA 90 bp CGACAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTGCATGTTCCACGGGGTaGGCTGTGTGGATCACATTC +
Preference number: 5 (lower is better)
Translates to: RQVRSVRLLWRSQVLVSSACSTG*AVWITF
Trigger: GAATGTGATCCACACAGCCAACCCCGTGGAACATGC...AGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTGTCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS TCA 90 bp CAATTCTGCTGCTCCAGCCTTGCCACCCGGGGCTGCAGGTGGGCTTaGCGCTTATCTTCACTAGGACGTCCTCGGTGGCTCTTTTCTTCC +
Preference number: 5 (lower is better)
Translates to: QFCCSSLATRGCRWA*RLSSLGRPRWLFSS
Trigger: GGAAGAAAAGAGCCACCGAGGACGTCCTAGTGAAGATAAGCGTCAAGCCCACCTGCAGCCCCGGGTGGCAAGGCTGGAGCAGCAGAATTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS GCA 90 bp TCCAACGTTGTCTCCCTCCAAGGTCAAGACCGCCTGGCTGGAGCTTaGTTGGATCTGCACGCCTCTGTTGGCATCTTCAGGGACCTGCAG +
Preference number: 5 (lower is better)
Translates to: SNVVSLQGQDRLAGA*LDLHASVGIFRDLQ
Trigger: CTGCAGGTCCCTGAAGATGCCAACAGAGGCGTGCAGATCCAAGCAAGCTCCAGCCAGGCGGTCTTGACCTTGGAGGGAGACAACGTTGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS GCA 90 bp CAGGTGTCCAGGTCATGCACAATTTCCTCTGACACCAGGGATTCTTaGACTGTGGGGTCCTCGGACCCATCTGCCTCGGGCTCCACCTCT +
Preference number: 5 (lower is better)
Translates to: QVSRSCTISSDTRDS*TVGSSDPSASGSTS
Trigger: AGAGGTGGAGCCCGAGGCAGATGGGTCCGAGGACCCCACAGTGCAAGAATCCCTGGTGTCAGAGGAAATTGTGCATGACCTGGACACCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CCA 90 bp CCAGCTCTCCAACGTTGTCTCCCTCCAAGGTCAAGACCGCCTGGCTaGAGCTTGCTTGGATCTGCACGCCTCTGTTGGCATCTTCAGGGA +
Preference number: 5 (lower is better)
Translates to: PALQRCLPPRSRPPG*SLLGSARLCWHLQG
Trigger: TCCCTGAAGATGCCAACAGAGGCGTGCAGATCCAAGCAAGCTCCAGCCAGGCGGTCTTGACCTTGGAGGGAGACAACGTTGGAGAGCTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CCA 90 bp GAAATACCCTCCGCGCTCTCAAACTCAGAAGCTGCGCGGGCAAAGTaGTGGACGCCACTCAGGCTGATCTTAGGCTCCTCCGGCTGCAAA +
Preference number: 5 (lower is better)
Translates to: EIPSALSNSEAARAK*WTPLRLILGSSGCK
Trigger: TTTGCAGCCGGAGGAGCCTAAGATCAGCCTGAGTGGCGTCCACCACTTTGCCCGCGCAGCTTCTGAGTTTGAGAGCGCGGAGGGTATTTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CAA 90 bp GAAACCATGTGGCTGCCAGTCACAGGCGTGTACAGGAAAGGCCAGGGGCTTTGGCCAGGTCAGAGTGGCTaGCTTCGATGCCCTTCTGCT +
Preference number: 5 (lower is better)
Translates to: ETMWLPVTGVYRKGQGLWPGQSG*LRCPSA
Trigger: AGCAGAAGGGCATCGAAGCAAGCCACTCTGACCTGG...CCAAAGCCCCTGGCCTTTCCTGTACACGCCTGTGACTGGCAGCCACATGGTTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR CAA 90 bp GGCTGCCAGTCACAGGCGTGTACAGGAAAGGCCAGGGGCTTTGGCAACATCCTGGCATGTTCCACGGGGTaGGCTGTGTGGATCACATTC +
Preference number: 5 (lower is better)
Translates to: GCQSQACTGKARGFGNILACSTG*AVWITF
Trigger: GAATGTGATCCACACAGCCAACCCCGTGGAACATGC...CAGGATGTTGCCAAAGCCCCTGGCCTTTCCTGTACACGCCTGTGACTGGCAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS GCA 90 bp AGCCAGGTTACCTCGGAAAAACTGTGTCATGTGCAGGTCGCCACCTaGAGAGGCCATCGTCGCAGGCTCAGTCTCATTGCCACTCTCCAC +
Preference number: 5 (lower is better)
Translates to: SQVTSEKLCHVQVAT*RGHRRRLSLIATLH
Trigger: GTGGAGAGTGGCAATGAGACTGAGCCTGCGACGATGGCCTCTGCAGGTGGCGACCTGCACATGACACAGTTTTTCCGAGGTAACCTGGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CAA 90 bp TTTGGTGCTGTTGTGCAGACTTGCTCAGAACCGTGGTCTTCCAAGCGAGGAGCCGGCTCGAGCCATGGCTaGTGCTTGTTAACTCGCGCG +
Preference number: 5 (lower is better)
Translates to: FGAVVQTCSEPWSSKRGAGSSHG*CLLTRA
Trigger: CGCGCGAGTTAACAAGCACAAGCCATGGCTCGAGCC...GGCTCCTCGCTTGGAAGACCACGGTTCTGAGCAAGTCTGCACAACAGCACCAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR CAA 90 bp CCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTCCCTGGCCCAAATCTCACCTTCTTaGGTGACTGTCACCTCAAAA +
Preference number: 5 (lower is better)
Translates to: PLSAASLEVPGAGVLSLAQISPS*VTVTSK
Trigger: TTTTGAGGTGACAGTCACCAAAGAAGGTGAGATTTG...GGCCAGGGAGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039144.7
CDS-3UTR CAA 90 bp CGACAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTGTCCTCATCACAGACTaGGTTCAGCTTCCAGTGGAA +
Preference number: 5 (lower is better)
Translates to: RQVRSVRLLWRSQVLVSSVLITD*VQLPVE
Trigger: TTCCACTGGAAGCTGAACCAAGTCTGTGATGAGGAC...AGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTGTCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CAA 90 bp ATCCTTCGAACTAGCAGCAACAGCAGCGAGGACTGGATGTCCCAGCTGGAGCAGCTGGCTGGAGCTTGCTaGGATCTGCACGCCTCTGTT +
Preference number: 5 (lower is better)
Translates to: ILRTSSNSSEDWMSQLEQLAGAC*DLHASV
Trigger: AACAGAGGCGTGCAGATCCAAGCAAGCTCCAGCCAG...CTGCTCCAGCTGGGACATCCAGTCCTCGCTGCTGTTGCTGCTAGTTCGAAGGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS TCA 90 bp CCTCCAGGCTCTCCTGCTCTGCGTTCAGCTCATCCCCTTCCACTGTaGCCTCACAGGTGTCCAGGTCATGCACAATTTCCTCTGACACCA +
Preference number: 5 (lower is better)
Translates to: PPGSPALRSAHPLPL*PHRCPGHAQFPLTP
Trigger: TGGTGTCAGAGGAAATTGTGCATGACCTGGACACCTGTGAGGTCACAGTGGAAGGGGATGAGCTGAACGCAGAGCAGGAGAGCCTGGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS TCA 90 bp TCCATCTCATTCTCCTTCCCCGTGTCCTGGTCCCGCATCGTTCGCTaGTGTGCAGCCCGGATCCGAAACACCCCCAGGATGATCATGAAA +
Preference number: 5 (lower is better)
Translates to: SISFSFPVSWSRIVR*CAARIRNTPRMIMK
Trigger: TTTCATGATCATCCTGGGGGTGTTTCGGATCCGGGCTGCACATCAGCGAACGATGCGGGACCAGGACACGGGGAAGGAGAATGAGATGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS GCA 90 bp TCTTTAGGGTCAAGGGTCACAACGCCGTCTGGAATCCTCACGGCCTaGGTGCCGTTGAACTCAAAGACCTGGTCACTGTCATGGCCGTTG +
Preference number: 5 (lower is better)
Translates to: SLGSRVTTPSGILTA*VPLNSKTWSLSWPL
Trigger: CAACGGCCATGACAGTGACCAGGTCTTTGAGTTCAACGGCACGCAGGCCGTGAGGATTCCAGACGGCGTTGTGACCCTTGACCCTAAAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS GCA 90 bp CGCCTCTGTTGGCATCTTCAGGGACCTGCAGGTCCAGCCCCTCCTTaGAGGTGTAGAGACAGTCAATCACCTTCTTATCCGCCAGTTTCC +
Preference number: 5 (lower is better)
Translates to: RLCWHLQGPAGPAPP*RCRDSQSPSYPPVS
Trigger: GGAAACTGGCGGATAAGAAGGTGATTGACTGTCTCTACACCTGCAAGGAGGGGCTGGACCTGCAGGTCCCTGAAGATGCCAACAGAGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CCA 90 bp ATCGATGTTCAGGGTGGACGAACTGTGGCTGGGCAGCCATGTGGTTaGCATGTTCCACGGGGTTGGCTGTGTGGATCACATTCACCTCCA +
Preference number: 5 (lower is better)
Translates to: IDVQGGRTVAGQPCG*HVPRGWLCGSHSPP
Trigger: TGGAGGTGAATGTGATCCACACAGCCAACCCCGTGGAACATGCCAACCACATGGCTGCCCAGCCACAGTTCGTCCACCCTGAACATCGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CCA 90 bp AAGGATCGATGTTCAGGGTGGACGAACTGTGGCTGGGCAGCCATGTaGTTGGCATGTTCCACGGGGTTGGCTGTGTGGATCACATTCACC +
Preference number: 5 (lower is better)
Translates to: KDRCSGWTNCGWAAM*LACSTGLAVWITFT
Trigger: GGTGAATGTGATCCACACAGCCAACCCCGTGGAACATGCCAACCACATGGCTGCCCAGCCACAGTTCGTCCACCCTGAACATCGATCCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CAA 90 bp GTCCCACACACCAAGCACGGGAGGACTTTGAGCAGTGGGGGAAGGGTCTGCAGAGTCCTCATCACAGACTaGGTTCAGCTTCCAGTGGAA +
Preference number: 5 (lower is better)
Translates to: VPHTKHGRTLSSGGRVCRVLITD*VQLPVE
Trigger: TTCCACTGGAAGCTGAACCAAGTCTGTGATGAGGAC...TCTGCAGACCCTTCCCCCACTGCTCAAAGTCCTCCCGTGCTTGGTGTGTGGGAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CAA 90 bp GTCCCACACACCAAGCACGGGAGGACTTTGAGCAGTGGGGGAAGGGTCTGCAGACTTGGAACTTCCACATaGAGGACAAAGTGGTGCCAG +
Preference number: 5 (lower is better)
Translates to: VPHTKHGRTLSSGGRVCRLGTST*RTKWCQ
Trigger: CTGGCACCACTTTGTCCTCAATGTGGAAGTTCCAAG...TCTGCAGACCCTTCCCCCACTGCTCAAAGTCCTCCCGTGCTTGGTGTGTGGGAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CAA 90 bp TACAGGAAAGGCCAGGGGCTTTGGCAACATCCTGGCTGTTCCCAGCCTCTAATGACGGTGCTGGTGATTTaGAGCCTGCGGATGCCTGGT +
Preference number: 5 (lower is better)
Translates to: YRKGQGLWQHPGCSQPLMTVLVI*SLRMPG
Trigger: ACCAGGCATCCGCAGGCTCAAAATCACCAGCACCGT...CATTAGAGGCTGGGAACAGCCAGGATGTTGCCAAAGCCCCTGGCCTTTCCTGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS TCA 90 bp TTCCACTGTGACCTCACAGGTGTCCAGGTCATGCACAATTTCCTCTaGCACCAGGGATTCTTGCACTGTGGGGTCCTCGGACCCATCTGC +
Preference number: 5 (lower is better)
Translates to: FHCDLTGVQVMHNFL*HQGFLHCGVLGPIC
Trigger: GCAGATGGGTCCGAGGACCCCACAGTGCAAGAATCCCTGGTGTCAGAGGAAATTGTGCATGACCTGGACACCTGTGAGGTCACAGTGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CCA 90 bp TTATCCAGCTCTCCAACGTTGTCTCCCTCCAAGGTCAAGACCGCCTaGCTGGAGCTTGCTTGGATCTGCACGCCTCTGTTGGCATCTTCA +
Preference number: 5 (lower is better)
Translates to: LSSSPTLSPSKVKTA*LELAWICTPLLASS
Trigger: TGAAGATGCCAACAGAGGCGTGCAGATCCAAGCAAGCTCCAGCCAGGCGGTCTTGACCTTGGAGGGAGACAACGTTGGAGAGCTGGATAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CAA 90 bp CGACAAGTCCGCTCAGTGCGGCTTCTCTGGAGGTCCCAGGTGCTGGTGTCCTCTAGTCCAGTTTCTCTTTaGACCGGATTATTCCCTCAC +
Preference number: 5 (lower is better)
Translates to: RQVRSVRLLWRSQVLVSSSPVSL*TGLFPH
Trigger: GTGAGGGAATAATCCGGTCAAAAGAGAAACTGGACT...AGAGGACACCAGCACCTGGGACCTCCAGAGAAGCCGCACTGAGCGGACTTGTCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CAA 90 bp GAAACCATGTGGCTGCCAGTCACAGGCGTGTACAGGAAAGGCCAGGGGCTTTGGGCCTCGTTGAAACACTaGACGGTGCTGGTGATTTTG +
Preference number: 5 (lower is better)
Translates to: ETMWLPVTGVYRKGQGLWASLKH*TVLVIL
Trigger: CAAAATCACCAGCACCGTCAAGTGTTTCAACGAGGC...CCAAAGCCCCTGGCCTTTCCTGTACACGCCTGTGACTGGCAGCCACATGGTTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS GCA 90 bp TTCAGCTCATCCCCTTCCACTGTGACCTCACAGGTGTCCAGGTCATaGACAATTTCCTCTGACACCAGGGATTCTTGCACTGTGGGGTCC +
Preference number: 5 (lower is better)
Translates to: FSSSPSTVTSQVSRS*TISSDTRDSCTVGS
Trigger: GGACCCCACAGTGCAAGAATCCCTGGTGTCAGAGGAAATTGTGCATGACCTGGACACCTGTGAGGTCACAGTGGAAGGGGATGAGCTGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CCA 90 bp GGAGATTGTAAAGGGTTCTTTAGGGTCAAGGGTCACAACGCCGTCTaGAATCCTCACGGCCTGCGTGCCGTTGAACTCAAAGACCTGGTC +
Preference number: 5 (lower is better)
Translates to: GDCKGFFRVKGHNAV*NPHGLRAVELKDLV
Trigger: GACCAGGTCTTTGAGTTCAACGGCACGCAGGCCGTGAGGATTCCAGACGGCGTTGTGACCCTTGACCCTAAAGAACCCTTTACAATCTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS TCA 90 bp GCTGGTGATTTTGAGCCTGCGGATGCCTGGTGTGGGGAACTGCCTTaGGTTAAGGTAGGAAATGTGCTGCATAGCCTTATCCAGCTCTCC +
Preference number: 5 (lower is better)
Translates to: AGDFEPADAWCGELP*VKVGNVLHSLIQLS
Trigger: GGAGAGCTGGATAAGGCTATGCAGCACATTTCCTACCTTAACTCAAGGCAGTTCCCCACACCAGGCATCCGCAGGCTCAAAATCACCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS GCA 90 bp TCCGAACTGCAGAGAATTGTCTCCTTCTTCCGGCCAAACGGCCCATaGCGCATCCACACGGAGATTGTAAAGGGTTCTTTAGGGTCAAGG +
Preference number: 5 (lower is better)
Translates to: SELQRIVSFFRPNGP*RIHTEIVKGSLGSR
Trigger: CCTTGACCCTAAAGAACCCTTTACAATCTCCGTGTGGATGCGGCATGGGCCGTTTGGCCGGAAGAAGGAGACAATTCTCTGCAGTTCGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CAA 90 bp CTCCTGGCCCCGCATTCTGACTTTACATTCCTGTCCTGGACTACTAGCACAGAGCCGAACTGCAGAGAATaGTCTCCTTCTTCCGGCCAA +
Preference number: 5 (lower is better)
Translates to: LLAPHSDFTFLSWTTSTEPNCRE*SPSSGQ
Trigger: TTGGCCGGAAGAAGGAGACAATTCTCTGCAGTTCGG...CTCTGTGCTAGTAGTCCAGGACAGGAATGTAAAGTCAGAATGCGGGGCCAGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS-3UTR CAA 90 bp GAAGGGTCTGCAGACCTGCTGGTCAAAATGATTTTGTACATCGTGGACCCGTGGGCAGGCTCAGTCTCATaGCCACTCTCCACTCCTGAA +
Preference number: 5 (lower is better)
Translates to: EGSADLLVKMILYIVDPWAGSVS*PLSTPE
Trigger: TTCAGGAGTGGAGAGTGGCAATGAGACTGAGCCTGC...CCACGGGTCCACGATGTACAAAATCATTTTGACCAGCAGGTCTGCAGACCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CAA 90 bp CTCCTGGCCCCGCATTCTGACTTTACATTCCTGTCCTGGACTACTAGCACAGAGTATGTCTCCATGGGGTaGACGGTGATGGTCAAGGCA +
Preference number: 5 (lower is better)
Translates to: LLAPHSDFTFLSWTTSTEYVSMG*TVMVKA
Trigger: TGCCTTGACCATCACCGTCAACCCCATGGAGACATA...CTCTGTGCTAGTAGTCCAGGACAGGAATGTAAAGTCAGAATGCGGGGCCAGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS TCA 90 bp GACAGTCAATCACCTTCTTATCCGCCAGTTTCCCAGAACGGACTGTaGGGCCAGCCAGGTTACCTCGGAAAAACTGTGTCATGTGCAGGT +
Preference number: 5 (lower is better)
Translates to: DSQSPSYPPVSQNGL*GQPGYLGKTVSCAG
Trigger: ACCTGCACATGACACAGTTTTTCCGAGGTAACCTGGCTGGCCTCACAGTCCGTTCTGGGAAACTGGCGGATAAGAAGGTGATTGACTGTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS GCA 90 bp ATTTCTTCTCCTCAGACGGGTCCTGACGGAGGAGGAAAACTAGCCTaGACCCGTGGACGTAGAGCGAATAATGGTGTCGGTTCATATCTG +
Preference number: 5 (lower is better)
Translates to: ISSPQTGPDGGGKLA*TRGRRANNGVGSYL
Trigger: CAGATATGAACCGACACCATTATTCGCTCTACGTCCACGGGTGCAGGCTAGTTTTCCTCCTCCGTCAGGACCCGTCTGAGGAGAAGAAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CCA 90 bp AGAGAAGGGCTCATGAGGGATGCCGTCCACGTAGAGAGTCACACTTaGAACTTCCACATTGAGGACAAAGTGGTGCCAGTCCTCATCACA +
Preference number: 5 (lower is better)
Translates to: REGLMRDAVHVESHT*NFHIEDKVVPVLIT
Trigger: TGTGATGAGGACTGGCACCACTTTGTCCTCAATGTGGAAGTTCCAAGTGTGACTCTCTACGTGGACGGCATCCCTCATGAGCCCTTCTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CAA 90 bp GCCTCGGGGTCTCCTTTTGGTGCTGTTGTGCAGACTTGCTCAGAACCGTGGTCTAGTCCAGTTTCTCTTTaGACCGGATTATTCCCTCAC +
Preference number: 5 (lower is better)
Translates to: ASGSPFGAVVQTCSEPWSSPVSL*TGLFPH
Trigger: GTGAGGGAATAATCCGGTCAAAAGAGAAACTGGACT...AGACCACGGTTCTGAGCAAGTCTGCACAACAGCACCAAAAGGAGACCCCGAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS GCA 90 bp CGTAGAGCGAATAATGGTGTCGGTTCATATCTGTCTTATCCGAACTaGAGAGAATTGTCTCCTTCTTCCGGCCAAACGGCCCATGCCGCA +
Preference number: 5 (lower is better)
Translates to: RRANNGVGSYLSYPN*RELSPSSGQTAHAA
Trigger: TGCGGCATGGGCCGTTTGGCCGGAAGAAGGAGACAATTCTCTGCAGTTCGGATAAGACAGATATGAACCGACACCATTATTCGCTCTACG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CAA 90 bp GAAGGGTCTGCAGACCTGCTGGTCAAAATGATTTTGTACATCGTGGACCCGTGGCTTGGAACTTCCACATaGAGGACAAAGTGGTGCCAG +
Preference number: 5 (lower is better)
Translates to: EGSADLLVKMILYIVDPWLGTST*RTKWCQ
Trigger: CTGGCACCACTTTGTCCTCAATGTGGAAGTTCCAAG...CCACGGGTCCACGATGTACAAAATCATTTTGACCAGCAGGTCTGCAGACCCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS-3UTR CAA 90 bp GAAGGGTCTGCAGACCTGCTGGTCAAAATGATTTTGTACATCGTGGACCCGTGGGCCTCGTTGAAACACTaGACGGTGCTGGTGATTTTG +
Preference number: 5 (lower is better)
Translates to: EGSADLLVKMILYIVDPWASLKH*TVLVIL
Trigger: CAAAATCACCAGCACCGTCAAGTGTTTCAACGAGGC...CCACGGGTCCACGATGTACAAAATCATTTTGACCAGCAGGTCTGCAGACCCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS TCA 90 bp GTGGACTTATCCACTACCACGGCATCAAAGGGGACATTCTGCCCGTaGATTTTAAAGCCACAAATCTCACCTGCAAAGCGGAGCGGTGAA +
Preference number: 5 (lower is better)
Translates to: VDLSTTTASKGTFCP*ILKPQISPAKRSGE
Trigger: TTCACCGCTCCGCTTTGCAGGTGAGATTTGTGGCTTTAAAATTCACGGGCAGAATGTCCCCTTTGATGCCGTGGTAGTGGATAAGTCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS TCA 72 bp CCAGTTGAAGGAGCTACTGGGGGACGGGAGCAGCTCTaGGGTGCCGGCAGCAGCCCCACAGAGCCGGTGAAG +
Preference number: 6 (lower is better)
Translates to: PVEGATGGREQL*GAGSSPTEPVK
Trigger: CTTCACCGGCTCTGTGGGGCTGCTGCCGGCACCTCAGAGCTGCTCCCGTCCCCCAGTAGCTCCTTCAACTGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS TCA 72 bp CATGGCCGTTGTCGGTGGGGAGGCCCACAGTCCAGTTaGAGGAGCTACTGGGGGACGGGAGCAGCTCTGAGG +
Preference number: 6 (lower is better)
Translates to: HGRCRWGGPQSS*RSYWGTGAALR
Trigger: CCTCAGAGCTGCTCCCGTCCCCCAGTAGCTCCTTCAACTGGACTGTGGGCCTCCCCACCGACAACGGCCATG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS GCA 72 bp GCGTCCACAGCCTCCACCCTGAGGATGCTGCTGTGCTaGTTGCCCTCCACCACGGCCGCCTTGTACGACTTC +
Preference number: 6 (lower is better)
Translates to: ASTASTLRMLLC*LPSTTAALYDF
Trigger: GAAGTCGTACAAGGCGGCCGTGGTGGAGGGCAAGCAGCACAGCAGCATCCTCAGGGTGGAGGCTGTGGACGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS GCA 72 bp CAGCCAAAGCACCCGTGCCGGGCTCATACTCAATTCTaGTGCTCCAGCCTTGCCACCCGGGGCTGCAGGTGG +
Preference number: 6 (lower is better)
Translates to: QPKHPCRAHTQF*CSSLATRGCRW
Trigger: CCACCTGCAGCCCCGGGTGGCAAGGCTGGAGCAGCAGAATTGAGTATGAGCCCGGCACGGGTGCTTTGGCTG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CAA 90 bp TGGTCACTGTCATGGCCGTTGTCGGTGGGGAGGCCCACAGTCCAGTaGAAGGAGCTACTGGGGGACGGGAGCAGCTCTGAGGTGCCGGCA +
Preference number: 6 (lower is better)
Translates to: WSLSWPLSVGRPTVQ*KELLGDGSSSEVPA
Trigger: TGCCGGCACCTCAGAGCTGCTCCCGTCCCCCAGTAGCTCCTTCAACTGGACTGTGGGCCTCCCCACCGACAACGGCCATGACAGTGACCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS TCA 72 bp TGCTCCAGCCTTGCCACCCGGGGCTGCAGGTGGGCTTaGCGCTTATCTTCACTAGGACGTCCTCGGTGGCTC +
Preference number: 6 (lower is better)
Translates to: CSSLATRGCRWA*RLSSLGRPRWL
Trigger: GAGCCACCGAGGACGTCCTAGTGAAGATAAGCGTCAAGCCCACCTGCAGCCCCGGGTGGCAAGGCTGGAGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CCA 72 bp CCCAGGTCAGAGTGGCTTGCTTCGATGCCCTTCTGCTaGAGGCGGGTCACGTCTACCTCCAGGCTCTCCTGC +
Preference number: 6 (lower is better)
Translates to: PRSEWLASMPFC*RRVTSTSRLSC
Trigger: GCAGGAGAGCCTGGAGGTAGACGTGACCCGCCTCCAGCAGAAGGGCATCGAAGCAAGCCACTCTGACCTGGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CCA 72 bp GTGGAGTCATCCCATTCCAGCTGTCGGGTGGCATTCTaGCCGTCTCCGGGGCCTCCTTCCTCCTCCTCACTG +
Preference number: 6 (lower is better)
Translates to: VESSHSSCRVAF*PSPGPPSSSSL
Trigger: CAGTGAGGAGGAGGAAGGAGGCCCCGGAGACGGCCAGAATGCCACCCGACAGCTGGAATGGGATGACTCCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CAA 72 bp TCCACAGCCTCCACCCTGAGGATGCTGCTGTGCTGCTaGCCCTCCACCACGGCCGCCTTGTACGACTTCTCC +
Preference number: 6 (lower is better)
Translates to: STASTLRMLLCC*PSTTAALYDFS
Trigger: GGAGAAGTCGTACAAGGCGGCCGTGGTGGAGGGCAAGCAGCACAGCAGCATCCTCAGGGTGGAGGCTGTGGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CAA 72 bp CTGCTCCAGCCTTGCCACCCGGGGCTGCAGGTGGGCTaGACGCTTATCTTCACTAGGACGTCCTCGGTGGCT +
Preference number: 6 (lower is better)
Translates to: LLQPCHPGLQVG*TLIFTRTSSVA
Trigger: AGCCACCGAGGACGTCCTAGTGAAGATAAGCGTCAAGCCCACCTGCAGCCCCGGGTGGCAAGGCTGGAGCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CAA 72 bp TCATGGCCGTTGTCGGTGGGGAGGCCCACAGTCCAGTaGAAGGAGCTACTGGGGGACGGGAGCAGCTCTGAG +
Preference number: 6 (lower is better)
Translates to: SWPLSVGRPTVQ*KELLGDGSSSE
Trigger: CTCAGAGCTGCTCCCGTCCCCCAGTAGCTCCTTCAACTGGACTGTGGGCCTCCCCACCGACAACGGCCATGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CAA 90 bp CAGTCTGCGTCCACAGCCTCCACCCTGAGGATGCTGCTGTGCTGCTaGCCCTCCACCACGGCCGCCTTGTACGACTTCTCCTTGAACACG +
Preference number: 6 (lower is better)
Translates to: QSASTASTLRMLLCC*PSTTAALYDFSLNT
Trigger: CGTGTTCAAGGAGAAGTCGTACAAGGCGGCCGTGGTGGAGGGCAAGCAGCACAGCAGCATCCTCAGGGTGGAGGCTGTGGACGCAGACTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CAA 90 bp GTCAAGACCGCCTGGCTGGAGCTTGCTTGGATCTGCACGCCTCTGTaGGCATCTTCAGGGACCTGCAGGTCCAGCCCCTCCTTGCAGGTG +
Preference number: 6 (lower is better)
Translates to: VKTAWLELAWICTPL*ASSGTCRSSPSLQV
Trigger: CACCTGCAAGGAGGGGCTGGACCTGCAGGTCCCTGAAGATGCCAACAGAGGCGTGCAGATCCAAGCAAGCTCCAGCCAGGCGGTCTTGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CAA 90 bp CCTTCCACCGGGGGCACCTCGATGCAAGCCGCCTCGTTGAAACACTaGACGGTGCTGGTGATTTTGAGCCTGCGGATGCCTGGTGTGGGG +
Preference number: 6 (lower is better)
Translates to: PSTGGTSMQAASLKH*TVLVILSLRMPGVG
Trigger: CCCCACACCAGGCATCCGCAGGCTCAAAATCACCAGCACCGTCAAGTGTTTCAACGAGGCGGCTTGCATCGAGGTGCCCCCGGTGGAAGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS GCA 72 bp TGCTGGAGGCGGGTCACGTCTACCTCCAGGCTCTCCTaGTCTGCGTTCAGCTCATCCCCTTCCACTGTGACC +
Preference number: 6 (lower is better)
Translates to: CWRRVTSTSRLS*SAFSSSPSTVT
Trigger: GGTCACAGTGGAAGGGGATGAGCTGAACGCAGAGCAGGAGAGCCTGGAGGTAGACGTGACCCGCCTCCAGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS GCA 72 bp CACGCCTGTGAAGACCACACCCAGGTCAGAGTGGCTTaGTTCGATGCCCTTCTGCTGGAGGCGGGTCACGTC +
Preference number: 6 (lower is better)
Translates to: HACEDHTQVRVA*FDALLLEAGHV
Trigger: GACGTGACCCGCCTCCAGCAGAAGGGCATCGAAGCAAGCCACTCTGACCTGGGTGTGGTCTTCACAGGCGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CCA 72 bp CTCGGTGACTATCCCATGGTAGGTGGGCTCGAGCCATaGCTTGTGCTTGTTAACTCGCGCGGCCCAGACCCC +
Preference number: 6 (lower is better)
Translates to: LGDYPMVGGLEP*LVLVNSRGPDP
Trigger: GGGGTCTGGGCCGCGCGAGTTAACAAGCACAAGCCATGGCTCGAGCCCACCTACCATGGGATAGTCACCGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CCA 72 bp TGCACAGAGGCGACAGGCTCGTCACAGGTCTCCAAGTaGATGCTCGGGAAGACAGCCAAAGCACCCGTGCCG +
Preference number: 6 (lower is better)
Translates to: CTEATGSSQVSK*MLGKTAKAPVP
Trigger: CGGCACGGGTGCTTTGGCTGTCTTCCCGAGCATCCACTTGGAGACCTGTGACGAGCCTGTCGCCTCTGTGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CCA 72 bp AGCCTTTCCCTATGTGGCTGGTCTCCAGCTCCACCGTaGCCTGCACAGAGGCGACAGGCTCGTCACAGGTCT +
Preference number: 6 (lower is better)
Translates to: SLSLCGWSPAPP*PAQRRQARHRS
Trigger: AGACCTGTGACGAGCCTGTCGCCTCTGTGCAGGCCACGGTGGAGCTGGAGACCAGCCACATAGGGAAAGGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CCA 72 bp ATCCTCACGGCCTGCGTGCCGTTGAACTCAAAGACCTaGTCACTGTCATGGCCGTTGTCGGTGGGGAGGCCC +
Preference number: 6 (lower is better)
Translates to: ILTACVPLNSKT*SLSWPLSVGRP
Trigger: GGGCCTCCCCACCGACAACGGCCATGACAGTGACCAGGTCTTTGAGTTCAACGGCACGCAGGCCGTGAGGAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CCA 72 bp CCTGGCTGGAGCTTGCTTGGATCTGCACGCCTCTGTTaGCATCTTCAGGGACCTGCAGGTCCAGCCCCTCCT +
Preference number: 6 (lower is better)
Translates to: PGWSLLGSARLC*HLQGPAGPAPP
Trigger: AGGAGGGGCTGGACCTGCAGGTCCCTGAAGATGCCAACAGAGGCGTGCAGATCCAAGCAAGCTCCAGCCAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CCA 72 bp GCGCTCTCAAACTCAGAAGCTGCGCGGGCAAAGTGGTaGACGCCACTCAGGCTGATCTTAGGCTCCTCCGGC +
Preference number: 6 (lower is better)
Translates to: ALSNSEAARAKW*TPLRLILGSSG
Trigger: GCCGGAGGAGCCTAAGATCAGCCTGAGTGGCGTCCACCACTTTGCCCGCGCAGCTTCTGAGTTTGAGAGCGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CAA 72 bp ATGCTGCTGTGCTGCTTGCCCTCCACCACGGCCGCCTaGTACGACTTCTCCTTGAACACGGGGGCGTACTCG +
Preference number: 6 (lower is better)
Translates to: MLLCCLPSTTAA*YDFSLNTGAYS
Trigger: CGAGTACGCCCCCGTGTTCAAGGAGAAGTCGTACAAGGCGGCCGTGGTGGAGGGCAAGCAGCACAGCAGCAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CAA 90 bp CTGTGCTGCTTGCCCTCCACCACGGCCGCCTTGTACGACTTCTCCTaGAACACGGGGGCGTACTCGTTCACGTCGTTCACCTGGATGTGC +
Preference number: 6 (lower is better)
Translates to: LCCLPSTTAALYDFS*NTGAYSFTSFTWMC
Trigger: GCACATCCAGGTGAACGACGTGAACGAGTACGCCCCCGTGTTCAAGGAGAAGTCGTACAAGGCGGCCGTGGTGGAGGGCAAGCAGCACAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CAA 90 bp GCCTGCGTGCCGTTGAACTCAAAGACCTGGTCACTGTCATGGCCGTaGTCGGTGGGGAGGCCCACAGTCCAGTTGAAGGAGCTACTGGGG +
Preference number: 6 (lower is better)
Translates to: ACVPLNSKTWSLSWP*SVGRPTVQLKELLG
Trigger: CCCCAGTAGCTCCTTCAACTGGACTGTGGGCCTCCCCACCGACAACGGCCATGACAGTGACCAGGTCTTTGAGTTCAACGGCACGCAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS TCA 72 bp GGGGAGGGTCGAGCAGCACCGTGTTATCGTTCTCGGTaGCTATCCCATGGTAGGTGGGCTCGAGCCATGGCT +
Preference number: 6 (lower is better)
Translates to: GEGRAAPCYRSR*LSHGRWARAMA
Trigger: AGCCATGGCTCGAGCCCACCTACCATGGGATAGTCACCGAGAACGATAACACGGTGCTGCTCGACCCTCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS TCA 72 bp TGCCCTCCACCACGGCCGCCTTGTACGACTTCTCCTTaGACACGGGGGCGTACTCGTTCACGTCGTTCACCT +
Preference number: 6 (lower is better)
Translates to: CPPPRPPCTTSP*TRGRTRSRRSP
Trigger: AGGTGAACGACGTGAACGAGTACGCCCCCGTGTTCAAGGAGAAGTCGTACAAGGCGGCCGTGGTGGAGGGCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS GCA 72 bp TGTGCACGGTCGCTTTGTGAGACTTTTTCACACCGGTaGCATCGGGGCCCTTCCCGCAGTCGTAGGCCTGGA +
Preference number: 6 (lower is better)
Translates to: CARSLCETFSHR*HRGPSRSRRPG
Trigger: TCCAGGCCTACGACTGCGGGAAGGGCCCCGATGGCACCGGTGTGAAAAAGTCTCACAAAGCGACCGTGCACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS GCA 72 bp AGGCCAGCCAGGTTACCTCGGAAAAACTGTGTCATGTaGAGGTCGCCACCTGCAGAGGCCATCGTCGCAGGC +
Preference number: 6 (lower is better)
Translates to: RPARLPRKNCVM*RSPPAEAIVAG
Trigger: GCCTGCGACGATGGCCTCTGCAGGTGGCGACCTGCACATGACACAGTTTTTCCGAGGTAACCTGGCTGGCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS GCA 72 bp CAGGGATTCTTGCACTGTGGGGTCCTCGGACCCATCTaGCTCGGGCTCCACCTCTCTGGTGATGGTGCTGAT +
Preference number: 6 (lower is better)
Translates to: QGFLHCGVLGPI*LGLHLSGDGAD
Trigger: ATCAGCACCATCACCAGAGAGGTGGAGCCCGAGGCAGATGGGTCCGAGGACCCCACAGTGCAAGAATCCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS GCA 72 bp CTTCCCCGTGTCCTGGTCCCGCATCGTTCGCTGATGTaGAGCCCGGATCCGAAACACCCCCAGGATGATCAT +
Preference number: 6 (lower is better)
Translates to: LPRVLVPHRSLM*SPDPKHPQDDH
Trigger: ATGATCATCCTGGGGGTGTTTCGGATCCGGGCTGCACATCAGCGAACGATGCGGGACCAGGACACGGGGAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CCA 72 bp CCCTCCAAGGTCAAGACCGCCTGGCTGGAGCTTGCTTaGATCTGCACGCCTCTGTTGGCATCTTCAGGGACC +
Preference number: 6 (lower is better)
Translates to: PSKVKTAWLELA*ICTPLLASSGT
Trigger: GGTCCCTGAAGATGCCAACAGAGGCGTGCAGATCCAAGCAAGCTCCAGCCAGGCGGTCTTGACCTTGGAGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CCA 72 bp TCCGCGCTCTCAAACTCAGAAGCTGCGCGGGCAAAGTaGTGGACGCCACTCAGGCTGATCTTAGGCTCCTCC +
Preference number: 6 (lower is better)
Translates to: SALSNSEAARAK*WTPLRLILGSS
Trigger: GGAGGAGCCTAAGATCAGCCTGAGTGGCGTCCACCACTTTGCCCGCGCAGCTTCTGAGTTTGAGAGCGCGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CAA 72 bp TTGCCCTCCACCACGGCCGCCTTGTACGACTTCTCCTaGAACACGGGGGCGTACTCGTTCACGTCGTTCACC +
Preference number: 6 (lower is better)
Translates to: LPSTTAALYDFS*NTGAYSFTSFT
Trigger: GGTGAACGACGTGAACGAGTACGCCCCCGTGTTCAAGGAGAAGTCGTACAAGGCGGCCGTGGTGGAGGGCAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CAA 90 bp TCAAGGGTCACAACGCCGTCTGGAATCCTCACGGCCTGCGTGCCGTaGAACTCAAAGACCTGGTCACTGTCATGGCCGTTGTCGGTGGGG +
Preference number: 6 (lower is better)
Translates to: SRVTTPSGILTACVP*NSKTWSLSWPLSVG
Trigger: CCCCACCGACAACGGCCATGACAGTGACCAGGTCTTTGAGTTCAACGGCACGCAGGCCGTGAGGATTCCAGACGGCGTTGTGACCCTTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CAA 90 bp TGCAGGTCGCCACCTGCAGAGGCCATCGTCGCAGGCTCAGTCTCATaGCCACTCTCCACTCCTGAATACTCTTGCCAGCAAGCTCCGACC +
Preference number: 6 (lower is better)
Translates to: CRSPPAEAIVAGSVS*PLSTPEYSCQQAPT
Trigger: GGTCGGAGCTTGCTGGCAAGAGTATTCAGGAGTGGAGAGTGGCAATGAGACTGAGCCTGCGACGATGGCCTCTGCAGGTGGCGACCTGCA
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS GCA 72 bp AAGGTCAAGACCGCCTGGCTGGAGCTTGCTTGGATCTaGACGCCTCTGTTGGCATCTTCAGGGACCTGCAGG +
Preference number: 6 (lower is better)
Translates to: KVKTAWLELAWI*TPLLASSGTCR
Trigger: CCTGCAGGTCCCTGAAGATGCCAACAGAGGCGTGCAGATCCAAGCAAGCTCCAGCCAGGCGGTCTTGACCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS GCA 72 bp GTCTCCCTCCAAGGTCAAGACCGCCTGGCTGGAGCTTaGTTGGATCTGCACGCCTCTGTTGGCATCTTCAGG +
Preference number: 6 (lower is better)
Translates to: VSLQGQDRLAGA*LDLHASVGIFR
Trigger: CCTGAAGATGCCAACAGAGGCGTGCAGATCCAAGCAAGCTCCAGCCAGGCGGTCTTGACCTTGGAGGGAGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CCA 72 bp TGCGTGCCGTTGAACTCAAAGACCTGGTCACTGTCATaGCCGTTGTCGGTGGGGAGGCCCACAGTCCAGTTG +
Preference number: 6 (lower is better)
Translates to: CVPLNSKTWSLS*PLSVGRPTVQL
Trigger: CAACTGGACTGTGGGCCTCCCCACCGACAACGGCCATGACAGTGACCAGGTCTTTGAGTTCAACGGCACGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CCA 72 bp CAGGGTGGACGAACTGTGGCTGGGCAGCCATGTGGTTaGCATGTTCCACGGGGTTGGCTGTGTGGATCACAT +
Preference number: 6 (lower is better)
Translates to: QGGRTVAGQPCG*HVPRGWLCGSH
Trigger: ATGTGATCCACACAGCCAACCCCGTGGAACATGCCAACCACATGGCTGCCCAGCCACAGTTCGTCCACCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CCA 72 bp TGTTCAGGGTGGACGAACTGTGGCTGGGCAGCCATGTaGTTGGCATGTTCCACGGGGTTGGCTGTGTGGATC +
Preference number: 6 (lower is better)
Translates to: CSGWTNCGWAAM*LACSTGLAVWI
Trigger: GATCCACACAGCCAACCCCGTGGAACATGCCAACCACATGGCTGCCCAGCCACAGTTCGTCCACCCTGAACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CAA 72 bp TCCCTCCAAGGTCAAGACCGCCTGGCTGGAGCTTGCTaGGATCTGCACGCCTCTGTTGGCATCTTCAGGGAC +
Preference number: 6 (lower is better)
Translates to: SLQGQDRLAGAC*DLHASVGIFRD
Trigger: GTCCCTGAAGATGCCAACAGAGGCGTGCAGATCCAAGCAAGCTCCAGCCAGGCGGTCTTGACCTTGGAGGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CAA 72 bp CCTTCCACCGGGGGCACCTCGATGCAAGCCGCCTCGTaGAAACACTTGACGGTGCTGGTGATTTTGAGCCTG +
Preference number: 6 (lower is better)
Translates to: PSTGGTSMQAAS*KHLTVLVILSL
Trigger: CAGGCTCAAAATCACCAGCACCGTCAAGTGTTTCAACGAGGCGGCTTGCATCGAGGTGCCCCCGGTGGAAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CAA 72 bp TCAGGGTGGACGAACTGTGGCTGGGCAGCCATGTGGTaGGCATGTTCCACGGGGTTGGCTGTGTGGATCACA +
Preference number: 6 (lower is better)
Translates to: SGWTNCGWAAMW*ACSTGLAVWIT
Trigger: TGTGATCCACACAGCCAACCCCGTGGAACATGCCAACCACATGGCTGCCCAGCCACAGTTCGTCCACCCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CAA 90 bp AACGTTGTCTCCCTCCAAGGTCAAGACCGCCTGGCTGGAGCTTGCTaGGATCTGCACGCCTCTGTTGGCATCTTCAGGGACCTGCAGGTC +
Preference number: 6 (lower is better)
Translates to: NVVSLQGQDRLAGAC*DLHASVGIFRDLQV
Trigger: GACCTGCAGGTCCCTGAAGATGCCAACAGAGGCGTGCAGATCCAAGCAAGCTCCAGCCAGGCGGTCTTGACCTTGGAGGGAGACAACGTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CAA 90 bp CTCCAACGTTGTCTCCCTCCAAGGTCAAGACCGCCTGGCTGGAGCTaGCTTGGATCTGCACGCCTCTGTTGGCATCTTCAGGGACCTGCA +
Preference number: 6 (lower is better)
Translates to: LQRCLPPRSRPPGWS*LGSARLCWHLQGPA
Trigger: TGCAGGTCCCTGAAGATGCCAACAGAGGCGTGCAGATCCAAGCAAGCTCCAGCCAGGCGGTCTTGACCTTGGAGGGAGACAACGTTGGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CAA 90 bp TCAATTCTGCTGCTCCAGCCTTGCCACCCGGGGCTGCAGGTGGGCTaGACGCTTATCTTCACTAGGACGTCCTCGGTGGCTCTTTTCTTC +
Preference number: 6 (lower is better)
Translates to: SILLLQPCHPGLQVG*TLIFTRTSSVALFF
Trigger: GAAGAAAAGAGCCACCGAGGACGTCCTAGTGAAGATAAGCGTCAAGCCCACCTGCAGCCCCGGGTGGCAAGGCTGGAGCAGCAGAATTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CAA 90 bp GATCGATGTTCAGGGTGGACGAACTGTGGCTGGGCAGCCATGTGGTaGGCATGTTCCACGGGGTTGGCTGTGTGGATCACATTCACCTCC +
Preference number: 6 (lower is better)
Translates to: DRCSGWTNCGWAAMW*ACSTGLAVWITFTS
Trigger: GGAGGTGAATGTGATCCACACAGCCAACCCCGTGGAACATGCCAACCACATGGCTGCCCAGCCACAGTTCGTCCACCCTGAACATCGATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS GCA 72 bp CCAAGTGGATGCTCGGGAAGACAGCCAAAGCACCCGTaGCGGGCTCATACTCAATTCTGCTGCTCCAGCCTT +
Preference number: 6 (lower is better)
Translates to: PSGCSGRQPKHP*RAHTQFCCSSL
Trigger: AAGGCTGGAGCAGCAGAATTGAGTATGAGCCCGGCACGGGTGCTTTGGCTGTCTTCCCGAGCATCCACTTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS GCA 72 bp CCTCAGACGGGTCCTGACGGAGGAGGAAAACTAGCCTaGACCCGTGGACGTAGAGCGAATAATGGTGTCGGT +
Preference number: 6 (lower is better)
Translates to: PQTGPDGGGKLA*TRGRRANNGVG
Trigger: ACCGACACCATTATTCGCTCTACGTCCACGGGTGCAGGCTAGTTTTCCTCCTCCGTCAGGACCCGTCTGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS GCA 72 bp ACCTCGGAAAAACTGTGTCATGTGCAGGTCGCCACCTaGAGAGGCCATCGTCGCAGGCTCAGTCTCATTGCC +
Preference number: 6 (lower is better)
Translates to: TSEKLCHVQVAT*RGHRRRLSLIA
Trigger: GGCAATGAGACTGAGCCTGCGACGATGGCCTCTGCAGGTGGCGACCTGCACATGACACAGTTTTTCCGAGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS GCA 72 bp TCCTCCTCCTCCTCCTCTTCCTCCTCCTCACTGCTGTaGTGGTCCTCATATGTCTCCATGGGGTTGACGGTG +
Preference number: 6 (lower is better)
Translates to: SSSSSSSSSSLL*WSSYVSMGLTV
Trigger: CACCGTCAACCCCATGGAGACATATGAGGACCAGCACAGCAGTGAGGAGGAGGAAGAGGAGGAGGAGGAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CCA 72 bp CAACGTTGTCTCCCTCCAAGGTCAAGACCGCCTGGCTaGAGCTTGCTTGGATCTGCACGCCTCTGTTGGCAT +
Preference number: 6 (lower is better)
Translates to: QRCLPPRSRPPG*SLLGSARLCWH
Trigger: ATGCCAACAGAGGCGTGCAGATCCAAGCAAGCTCCAGCCAGGCGGTCTTGACCTTGGAGGGAGACAACGTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CCA 72 bp TCTCCAACGTTGTCTCCCTCCAAGGTCAAGACCGCCTaGCTGGAGCTTGCTTGGATCTGCACGCCTCTGTTG +
Preference number: 6 (lower is better)
Translates to: SPTLSPSKVKTA*LELAWICTPLL
Trigger: CAACAGAGGCGTGCAGATCCAAGCAAGCTCCAGCCAGGCGGTCTTGACCTTGGAGGGAGACAACGTTGGAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CCA 72 bp TCGCCGTGCTGGGGACAACTGCAAACGGGTGAGGATTaGCCAGGTTGTGACCAGACAGGTCCACAAAGGATC +
Preference number: 6 (lower is better)
Translates to: SPCWGQLQTGED*PGCDQTGPQRI
Trigger: GATCCTTTGTGGACCTGTCTGGTCACAACCTGGCCAATCCTCACCCGTTTGCAGTTGTCCCCAGCACGGCGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CAA 72 bp CCGTTGAACTCAAAGACCTGGTCACTGTCATGGCCGTaGTCGGTGGGGAGGCCCACAGTCCAGTTGAAGGAG +
Preference number: 6 (lower is better)
Translates to: PLNSKTWSLSWP*SVGRPTVQLKE
Trigger: CTCCTTCAACTGGACTGTGGGCCTCCCCACCGACAACGGCCATGACAGTGACCAGGTCTTTGAGTTCAACGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CAA 72 bp TGTCTCCCTCCAAGGTCAAGACCGCCTGGCTGGAGCTaGCTTGGATCTGCACGCCTCTGTTGGCATCTTCAG +
Preference number: 6 (lower is better)
Translates to: CLPPRSRPPGWS*LGSARLCWHLQ
Trigger: CTGAAGATGCCAACAGAGGCGTGCAGATCCAAGCAAGCTCCAGCCAGGCGGTCTTGACCTTGGAGGGAGACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CAA 72 bp GCCGCCTCGTTGAAACACTTGACGGTGCTGGTGATTTaGAGCCTGCGGATGCCTGGTGTGGGGAACTGCCTT +
Preference number: 6 (lower is better)
Translates to: AASLKHLTVLVI*SLRMPGVGNCL
Trigger: AAGGCAGTTCCCCACACCAGGCATCCGCAGGCTCAAAATCACCAGCACCGTCAAGTGTTTCAACGAGGCGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CAA 72 bp GGCTGGGCAGCCATGTGGTTGGCATGTTCCACGGGGTaGGCTGTGTGGATCACATTCACCTCCACCTTGAAC +
Preference number: 6 (lower is better)
Translates to: GWAAMWLACSTG*AVWITFTSTLN
Trigger: GTTCAAGGTGGAGGTGAATGTGATCCACACAGCCAACCCCGTGGAACATGCCAACCACATGGCTGCCCAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS GCA 72 bp TCAAGGGTCACAACGCCGTCTGGAATCCTCACGGCCTaGGTGCCGTTGAACTCAAAGACCTGGTCACTGTCA +
Preference number: 6 (lower is better)
Translates to: SRVTTPSGILTA*VPLNSKTWSLS
Trigger: TGACAGTGACCAGGTCTTTGAGTTCAACGGCACGCAGGCCGTGAGGATTCCAGACGGCGTTGTGACCCTTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CCA 72 bp TCCTCCTCCTCCTCTTCCTCCTCCTCACTGCTGTGCTaGTCCTCATATGTCTCCATGGGGTTGACGGTGATG +
Preference number: 6 (lower is better)
Translates to: SSSSSSSSSLLC*SSYVSMGLTVM
Trigger: CATCACCGTCAACCCCATGGAGACATATGAGGACCAGCACAGCAGTGAGGAGGAGGAAGAGGAGGAGGAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CAA 72 bp CCACCTGCAGAGGCCATCGTCGCAGGCTCAGTCTCATaGCCACTCTCCACTCCTGAATACTCTTGCCAGCAA +
Preference number: 6 (lower is better)
Translates to: PPAEAIVAGSVS*PLSTPEYSCQQ
Trigger: TTGCTGGCAAGAGTATTCAGGAGTGGAGAGTGGCAATGAGACTGAGCCTGCGACGATGGCCTCTGCAGGTGG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CAA 90 bp TCGATGCAAGCCGCCTCGTTGAAACACTTGACGGTGCTGGTGATTTaGAGCCTGCGGATGCCTGGTGTGGGGAACTGCCTTGAGTTAAGG +
Preference number: 6 (lower is better)
Translates to: SMQAASLKHLTVLVI*SLRMPGVGNCLELR
Trigger: CCTTAACTCAAGGCAGTTCCCCACACCAGGCATCCGCAGGCTCAAAATCACCAGCACCGTCAAGTGTTTCAACGAGGCGGCTTGCATCGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CAA 90 bp ACGAACTGTGGCTGGGCAGCCATGTGGTTGGCATGTTCCACGGGGTaGGCTGTGTGGATCACATTCACCTCCACCTTGAACTCATTGCTG +
Preference number: 6 (lower is better)
Translates to: TNCGWAAMWLACSTG*AVWITFTSTLNSLL
Trigger: CAGCAATGAGTTCAAGGTGGAGGTGAATGTGATCCACACAGCCAACCCCGTGGAACATGCCAACCACATGGCTGCCCAGCCACAGTTCGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS TCA 72 bp GACCTCACAGGTGTCCAGGTCATGCACAATTTCCTCTaGCACCAGGGATTCTTGCACTGTGGGGTCCTCGGA +
Preference number: 6 (lower is better)
Translates to: DLTGVQVMHNFL*HQGFLHCGVLG
Trigger: TCCGAGGACCCCACAGTGCAAGAATCCCTGGTGTCAGAGGAAATTGTGCATGACCTGGACACCTGTGAGGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS GCA 72 bp TGGCATCTTCAGGGACCTGCAGGTCCAGCCCCTCCTTaGAGGTGTAGAGACAGTCAATCACCTTCTTATCCG +
Preference number: 6 (lower is better)
Translates to: WHLQGPAGPAPP*RCRDSQSPSYP
Trigger: CGGATAAGAAGGTGATTGACTGTCTCTACACCTGCAAGGAGGGGCTGGACCTGCAGGTCCCTGAAGATGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CCA 72 bp AAAGGGTTCTTTAGGGTCAAGGGTCACAACGCCGTCTaGAATCCTCACGGCCTGCGTGCCGTTGAACTCAAA +
Preference number: 6 (lower is better)
Translates to: KGFFRVKGHNAV*NPHGLRAVELK
Trigger: TTTGAGTTCAACGGCACGCAGGCCGTGAGGATTCCAGACGGCGTTGTGACCCTTGACCCTAAAGAACCCTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS TCA 72 bp TCACCTTCTTATCCGCCAGTTTCCCAGAACGGACTGTaGGGCCAGCCAGGTTACCTCGGAAAAACTGTGTCA +
Preference number: 6 (lower is better)
Translates to: SPSYPPVSQNGL*GQPGYLGKTVS
Trigger: TGACACAGTTTTTCCGAGGTAACCTGGCTGGCCTCACAGTCCGTTCTGGGAAACTGGCGGATAAGAAGGTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS GCA 72 bp TCCCCTTCCACTGTGACCTCACAGGTGTCCAGGTCATaGACAATTTCCTCTGACACCAGGGATTCTTGCACT +
Preference number: 6 (lower is better)
Translates to: SPSTVTSQVSRS*TISSDTRDSCT
Trigger: AGTGCAAGAATCCCTGGTGTCAGAGGAAATTGTGCATGACCTGGACACCTGTGAGGTCACAGTGGAAGGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CCA 72 bp GCAAGCTCCGACCACAAGCTGAGTCTCTATTTTGGTTaGATGAAGCGGGTAGTCCTCTGTCACAGAGAAGGG +
Preference number: 6 (lower is better)
Translates to: ASSDHKLSLYFG*MKRVVLCHREG
Trigger: CCCTTCTCTGTGACAGAGGACTACCCGCTTCATCCAACCAAAATAGAGACTCAGCTTGTGGTCGGAGCTTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CCA 72 bp GCCAGCAAGCTCCGACCACAAGCTGAGTCTCTATTTTaGTTGGATGAAGCGGGTAGTCCTCTGTCACAGAGA +
Preference number: 6 (lower is better)
Translates to: ASKLRPQAESLF*LDEAGSPLSQR
Trigger: TCTCTGTGACAGAGGACTACCCGCTTCATCCAACCAAAATAGAGACTCAGCTTGTGGTCGGAGCTTGCTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CAA 72 bp GTCGGTTCATATCTGTCTTATCCGAACTGCAGAGAATaGTCTCCTTCTTCCGGCCAAACGGCCCATGCCGCA +
Preference number: 6 (lower is better)
Translates to: VGSYLSYPNCRE*SPSSGQTAHAA
Trigger: TGCGGCATGGGCCGTTTGGCCGGAAGAAGGAGACAATTCTCTGCAGTTCGGATAAGACAGATATGAACCGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CAA 90 bp AATAATGGTGTCGGTTCATATCTGTCTTATCCGAACTGCAGAGAATaGTCTCCTTCTTCCGGCCAAACGGCCCATGCCGCATCCACACGG +
Preference number: 6 (lower is better)
Translates to: NNGVGSYLSYPNCRE*SPSSGQTAHAASTR
Trigger: CCGTGTGGATGCGGCATGGGCCGTTTGGCCGGAAGAAGGAGACAATTCTCTGCAGTTCGGATAAGACAGATATGAACCGACACCATTATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS TCA 72 bp TTTGAGCCTGCGGATGCCTGGTGTGGGGAACTGCCTTaGGTTAAGGTAGGAAATGTGCTGCATAGCCTTATC +
Preference number: 6 (lower is better)
Translates to: FEPADAWCGELP*VKVGNVLHSLI
Trigger: GATAAGGCTATGCAGCACATTTCCTACCTTAACTCAAGGCAGTTCCCCACACCAGGCATCCGCAGGCTCAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS GCA 72 bp CAGAGAATTGTCTCCTTCTTCCGGCCAAACGGCCCATaGCGCATCCACACGGAGATTGTAAAGGGTTCTTTA +
Preference number: 6 (lower is better)
Translates to: QRIVSFFRPNGP*RIHTEIVKGSL
Trigger: TAAAGAACCCTTTACAATCTCCGTGTGGATGCGGCATGGGCCGTTTGGCCGGAAGAAGGAGACAATTCTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CAA 72 bp AGCAAGCTCCGACCACAAGCTGAGTCTCTATTTTGGTaGGATGAAGCGGGTAGTCCTCTGTCACAGAGAAGG +
Preference number: 6 (lower is better)
Translates to: SKLRPQAESLFW*DEAGSPLSQRR
Trigger: CCTTCTCTGTGACAGAGGACTACCCGCTTCATCCAACCAAAATAGAGACTCAGCTTGTGGTCGGAGCTTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS TCA 72 bp CGTCCACGTAGAGAGTCACACTTGGAACTTCCACATTaGGGACAAAGTGGTGCCAGTCCTCATCACAGACTT +
Preference number: 6 (lower is better)
Translates to: RPRRESHLELPH*GQSGASPHHRL
Trigger: AAGTCTGTGATGAGGACTGGCACCACTTTGTCCTCAATGTGGAAGTTCCAAGTGTGACTCTCTACGTGGACG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS TCA 72 bp TCCACTACCACGGCATCAAAGGGGACATTCTGCCCGTaGATTTTAAAGCCACAAATCTCACCTGCAAAGCGG +
Preference number: 6 (lower is better)
Translates to: STTTASKGTFCP*ILKPQISPAKR
Trigger: CCGCTTTGCAGGTGAGATTTGTGGCTTTAAAATTCACGGGCAGAATGTCCCCTTTGATGCCGTGGTAGTGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105691.8
CDS GCA 72 bp GTCACACTTGGAACTTCCACATTGAGGACAAAGTGGTaGCAGTCCTCATCACAGACTTGGTTCAGCTTCCAG +
Preference number: 6 (lower is better)
Translates to: VTLGTSTLRTKW*QSSSQTWFSFQ
Trigger: CTGGAAGCTGAACCAAGTCTGTGATGAGGACTGGCACCACTTTGTCCTCAATGTGGAAGTTCCAAGTGTGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CCA 72 bp CCAGTTTCTCTTTTGACCGGATTATTCCCTCACCCGTaGACTTATCCACTACCACGGCATCAAAGGGGACAT +
Preference number: 6 (lower is better)
Translates to: PVSLLTGLFPHP*TYPLPRHQRGH
Trigger: ATGTCCCCTTTGATGCCGTGGTAGTGGATAAGTCCACGGGTGAGGGAATAATCCGGTCAAAAGAGAAACTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS GCA 72 bp AATAATGGTGTCGGTTCATATCTGTCTTATCCGAACTaGAGAGAATTGTCTCCTTCTTCCGGCCAAACGGCC +
Preference number: 6 (lower is better)
Translates to: NNGVGSYLSYPN*RELSPSSGQTA
Trigger: GGCCGTTTGGCCGGAAGAAGGAGACAATTCTCTGCAGTTCGGATAAGACAGATATGAACCGACACCATTATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8
CDS CAA 72 bp TGTAGTCTTTCTGTAGTTCACAGTCCAGTTTCTCTTTaGACCGGATTATTCCCTCACCCGTGGACTTATCCA +
Preference number: 6 (lower is better)
Translates to: CSLSVVHSPVSL*TGLFPHPWTYP
Trigger: TGGATAAGTCCACGGGTGAGGGAATAATCCGGTCAAAAGAGAAACTGGACTGTGAACTACAGAAAGACTACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039144.7
ENSMUST00000105691.8