Pregenerated sensors for CLRN3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000050866Ensembl transcript IDs: ENSMUST00000053716.8
Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTCTTTATGAAGTTCTGCTGGCCTCGAACTCCCAACATACCAGAGTaGCTTCAAAGCTGTGGCAATCTTCTGATTCCTGAAGATGGGCTC | + |
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Preference number: 1 (lower is better) Translates to: LFMKFCWPRTPNIPE*LQSCGNLLIPEDGL Trigger: GAGCCCATCTTCAGGAATCAGAAGATTGCCACAGCTTTGAAGTCACTCTGGTATGTTGGGAGTTCGAGGCCAGCAGAACTTCATAAAGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| 3UTR TCA 90 bp | ATCATGATAAAGGAAACTTACAAAGAAAGAGTCTATTTGGGCTCATaGTTCCGGAAGGAGAGTCTACAATGTCAAGGAGGCATGGTGGCA | + |
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Preference number: 1 (lower is better) Translates to: IMIKETYKERVYLGS*FRKESLQCQGGMVA Trigger: TGCCACCATGCCTCCTTGACATTGTAGACTCTCCTTCCGGAATCATGAGCCCAAATAGACTCTTTCTTTGTAAGTTTCCTTTATCATGAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| 3UTR GCA 90 bp | AGTGCTTCTCTGCTTAAAAATCCTTATACTTATCATGGACCGAAATaGCTGATCAATCCAGAGGACAAGGTCATAGGGGCTATAGTCTGT | + |
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Preference number: 1 (lower is better) Translates to: SASLLKNPYTYHGPK*LINPEDKVIGAIVC Trigger: ACAGACTATAGCCCCTATGACCTTGTCCTCTGGATTGATCAGGCATTTCGGTCCATGATAAGTATAAGGATTTTTAAGCAGAGAAGCACT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| 3UTR GCA 90 bp | TGTACCAACACATCTGGTGAACATAGTGGTTTATATTCGTTCTTTTaGAAATGTGATGAACTTTGCAACCTACCTCATAACAAGACAAAG | + |
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Preference number: 1 (lower is better) Translates to: CTNTSGEHSGLYSFF*KCDELCNLPHNKTK Trigger: CTTTGTCTTGTTATGAGGTAGGTTGCAAAGTTCATCACATTTGCAAAAGAACGAATATAAACCACTATGTTCACCAGATGTGTTGGTACA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| 3UTR-3UTR GCA 90 bp | CCATGTGTCTTGCTAAGTCTCCCAGGCTTGCCTGGAATCCCTGATCTTTCTGCCCAAATGAGAAAGGCCTaGAGGCCCCAGGCTGCCCTC | + |
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Preference number: 2 (lower is better) Translates to: PCVLLSLPGLPGIPDLSAQMRKA*RPQAAL Trigger: GAGGGCAGCCTGGGGCCTGCAGGCCTTTCTCATTTG...GGCAGAAAGATCAGGGATTCCAGGCAAGCCTGGGAGACTTAGCAAGACACATGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| 3UTR-3UTR GCA 90 bp | CCATGTGTCTTGCTAAGTCTCCCAGGCTTGCCTGGAATCCCTGATCTTTCTGCCAGCATCCCCAAACAGTaGCACCACTGGGGAACAGGC | + |
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Preference number: 2 (lower is better) Translates to: PCVLLSLPGLPGIPDLSASIPKQ*HHWGTG Trigger: GCCTGTTCCCCAGTGGTGGCACTGTTTGGGGATGCT...GGCAGAAAGATCAGGGATTCCAGGCAAGCCTGGGAGACTTAGCAAGACACATGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| 3UTR CAA 90 bp | GCAGGGTCAAATGAGAAAGGCCTGCAGGCCCCAGGCTGCCCTCTTTaGGATTACTCTAGACCACAGCCCTTCCCAATCATTTTCCTGATC | + |
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Preference number: 2 (lower is better) Translates to: AGSNEKGLQAPGCPL*DYSRPQPFPIIFLI Trigger: GATCAGGAAAATGATTGGGAAGGGCTGTGGTCTAGAGTAATCCAAAAGAGGGCAGCCTGGGGCCTGCAGGCCTTTCTCATTTGACCCTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| 3UTR-3UTR GCA 90 bp | AGGCCCCAGGCTGCCCTCTTTTGGATTACTCTAGACCACAGCCCTTCCCAATCAACAGTTGCTCTGCCATaGAGTGTTCAGAGGAGTGAG | + |
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Preference number: 2 (lower is better) Translates to: RPQAALFWITLDHSPSQSTVALP*SVQRSE Trigger: CTCACTCCTCTGAACACTGCATGGCAGAGCAACTGT...TGATTGGGAAGGGCTGTGGTCTAGAGTAATCCAAAAGAGGGCAGCCTGGGGCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| 3UTR-3UTR CCA 90 bp | GGCATTCAAACTCCTGAGCCTCTGGTGACATCTCTCATTCAAACCACGAGGGCCCTTAGTGTTCTACAATaGAGGGATGACCTCCAACCC | + |
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Preference number: 2 (lower is better) Translates to: GIQTPEPLVTSLIQTTRALSVLQ*RDDLQP Trigger: GGGTTGGAGGTCATCCCTCCATTGTAGAACACTAAG...GGCCCTCGTGGTTTGAATGAGAGATGTCACCAGAGGCTCAGGAGTTTGAATGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| 3UTR-3UTR TCA 90 bp | GGCATTCAAACTCCTGAGCCTCTGGTGACATCTCTCATTCAAACCACGAGGGCCCACATCTCTGAGTGTTaGAGGTCATCTAGCTTCATA | + |
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Preference number: 2 (lower is better) Translates to: GIQTPEPLVTSLIQTTRAHISEC*RSSSFI Trigger: TATGAAGCTAGATGACCTTCAACACTCAGAGATGTG...GGCCCTCGTGGTTTGAATGAGAGATGTCACCAGAGGCTCAGGAGTTTGAATGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| 3UTR-3UTR TCA 90 bp | AGCTTATTAAATGTCTTTCTCGTCTGCCTGGTAGTAAATAAACCCAGCATGCTGGATAGCAGGGTCAAATaGGAAAGGCCTGCAGGCCCC | + |
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Preference number: 2 (lower is better) Translates to: SLLNVFLVCLVVNKPSMLDSRVK*ERPAGP Trigger: GGGGCCTGCAGGCCTTTCTCATTTGACCCTGCTATC...CAGCATGCTGGGTTTATTTACTACCAGGCAGACGAGAAAGACATTTAATAAGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| 3UTR-3UTR GCA 90 bp | GGCATTCAAACTCCTGAGCCTCTGGTGACATCTCTCATTCAAACCACGAGGGCCTACCCATTAAGCCATTaGTTCCCAAACCCAAACTTT | + |
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Preference number: 2 (lower is better) Translates to: GIQTPEPLVTSLIQTTRAYPLSH*FPNPNF Trigger: AAAGTTTGGGTTTGGGAAGCAATGGCTTAATGGGTA...GGCCCTCGTGGTTTGAATGAGAGATGTCACCAGAGGCTCAGGAGTTTGAATGCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| 3UTR-3UTR CCA 90 bp | ACCTACCTCATAACAAGACAAAGTAATGGTTTTGTTTGTATGCTTGCTGGCTTGGTAGGTGATGAGGAGTaGACAGGGGCATCAGGCTTG | + |
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Preference number: 2 (lower is better) Translates to: TYLITRQSNGFVCMLAGLVGDEE*TGASGL Trigger: CAAGCCTGATGCCCCTGTCCACTCCTCATCACCTAC...CAAGCCAGCAAGCATACAAACAAAACCATTACTTTGTCTTGTTATGAGGTAGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| 3UTR-3UTR CCA 90 bp | CAAAGTAATGGTTTTGTTTGTATGCTTGCTGGCTTGAGGCAAGCCCATATGTATTACAAGGTAGCCCAGTaGGTAAATGTGCTTGCCAGC | + |
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Preference number: 2 (lower is better) Translates to: QSNGFVCMLAGLRQAHMYYKVAQ*VNVLAS Trigger: GCTGGCAAGCACATTTACCCACTGGGCTACCTTGTA...ATACATATGGGCTTGCCTCAAGCCAGCAAGCATACAAACAAAACCATTACTTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| 3UTR-3UTR GCA 90 bp | CAGGACCGAGTCGCTTTAAATTGTATTTGTTTCACATATGTGCGTTTCTTTTGTCCAAGTCCCAAGCTCTaGAAGTGTCTAGCCCTCACT | + |
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Preference number: 2 (lower is better) Translates to: QDRVALNCICFTYVRFFCPSPKL*KCLALT Trigger: AGTGAGGGCTAGACACTTGCAGAGCTTGGGACTTGG...ACAAAAGAAACGCACATATGTGAAACAAATACAATTTAAAGCGACTCGGTCCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| 3UTR-3UTR CCA 90 bp | CAAAGTAATGGTTTTGTTTGTATGCTTGCTGGCTTGAGGCAAGCCCATATGTATAGGAGTGAGTCAGTTTaGCAGAGACAGTGCAAATGG | + |
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Preference number: 2 (lower is better) Translates to: QSNGFVCMLAGLRQAHMYRSESV*QRQCKW Trigger: CCATTTGCACTGTCTCTGCCAAACTGACTCACTCCT...ATACATATGGGCTTGCCTCAAGCCAGCAAGCATACAAACAAAACCATTACTTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| 3UTR-3UTR CCA 90 bp | AATGAACAGGACCGAGTCGCTTTAAATTGTATTTGTTTCACATATGTGCGTTTCTGGTTCCAGAAGCGATaGCACCTGACAGTTGCTCTG | + |
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Preference number: 2 (lower is better) Translates to: NEQDRVALNCICFTYVRFWFQKR*HLTVAL Trigger: CAGAGCAACTGTCAGGTGCCATCGCTTCTGGAACCA...GAAACGCACATATGTGAAACAAATACAATTTAAAGCGACTCGGTCCTGTTCATT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| 3UTR-3UTR TCA 90 bp | AATGAACAGGACCGAGTCGCTTTAAATTGTATTTGTTTCACATATGTGCGTTTCGGGCATCAGGCTTGGTaGCAAGCACTTTTACCCATT | + |
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Preference number: 2 (lower is better) Translates to: NEQDRVALNCICFTYVRFGHQAW*QALLPI Trigger: AATGGGTAAAAGTGCTTGTCACCAAGCCTGATGCCC...GAAACGCACATATGTGAAACAAATACAATTTAAAGCGACTCGGTCCTGTTCATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| 3UTR-3UTR TCA 90 bp | ACCAACACATCTGGTGAACATAGTGGTTTATATTCGTTCTTTTGCAAATGTGATGCTGTGGCAATCTTCTaGTTCCTGAAGATGGGCTCA | + |
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Preference number: 2 (lower is better) Translates to: TNTSGEHSGLYSFFCKCDAVAIF*FLKMGS Trigger: TGAGCCCATCTTCAGGAATCAGAAGATTGCCACAGC...ATCACATTTGCAAAAGAACGAATATAAACCACTATGTTCACCAGATGTGTTGGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| 3UTR-3UTR TCA 90 bp | ACCAACACATCTGGTGAACATAGTGGTTTATATTCGTTCTTTTGCAAATGTGATCAATCTGTTCATGCATaGCTTCCCAAGTCCCAAGCT | + |
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Preference number: 2 (lower is better) Translates to: TNTSGEHSGLYSFFCKCDQSVHA*LPKSQA Trigger: AGCTTGGGACTTGGGAAGTCATGCATGAACAGATTG...ATCACATTTGCAAAAGAACGAATATAAACCACTATGTTCACCAGATGTGTTGGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| 3UTR CCA 72 bp | TCCGGAAGGAGAGTCTACAATGTCAAGGAGGCATGGTaGCAACTGGCAGGGCCAACTCCAGGAGCAGGAAGC | + |
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Preference number: 3 (lower is better) Translates to: SGRRVYNVKEAW*QLAGPTPGAGS Trigger: GCTTCCTGCTCCTGGAGTTGGCCCTGCCAGTTGCCACCATGCCTCCTTGACATTGTAGACTCTCCTTCCGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| 3UTR GCA 72 bp | GCAGGGTCAAATGAGAAAGGCCTGCAGGCCCCAGGCTaGCCTCTTTTGGATTACTCTAGACCACAGCCCTTC | + |
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Preference number: 3 (lower is better) Translates to: AGSNEKGLQAPG*PLLDYSRPQPF Trigger: GAAGGGCTGTGGTCTAGAGTAATCCAAAAGAGGGCAGCCTGGGGCCTGCAGGCCTTTCTCATTTGACCCTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| 3UTR CCA 72 bp | GATTCCGGAAGGAGAGTCTACAATGTCAAGGAGGCATaGTGGCAACTGGCAGGGCCAACTCCAGGAGCAGGA | + |
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Preference number: 3 (lower is better) Translates to: DSGRRVYNVKEA*WQLAGPTPGAG Trigger: TCCTGCTCCTGGAGTTGGCCCTGCCAGTTGCCACCATGCCTCCTTGACATTGTAGACTCTCCTTCCGGAATC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| 3UTR TCA 72 bp | CCACAGACCTATATTACTGCCGATAGCAGGGTCAAATaGGAAAGGCCTGCAGGCCCCAGGCTGCCCTCTTTT | + |
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Preference number: 3 (lower is better) Translates to: PQTYITADSRVK*ERPAGPRLPSF Trigger: AAAAGAGGGCAGCCTGGGGCCTGCAGGCCTTTCTCATTTGACCCTGCTATCGGCAGTAATATAGGTCTGTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| 3UTR TCA 72 bp | AGAGTGACTTCAAAGCTGTGGCAATCTTCTGATTCCTaGAGATGGGCTCAAGGGCATGGGCCAGCACCCACC | + |
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Preference number: 3 (lower is better) Translates to: RVTSKLWQSSDS*RWAQGHGPAPT Trigger: GGTGGGTGCTGGCCCATGCCCTTGAGCCCATCTTCAGGAATCAGAAGATTGCCACAGCTTTGAAGTCACTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| 3UTR TCA 72 bp | ACAGTGCCACCACTGGGGAACAGGCATTCAAACTCCTaGGCCTCTGGTGACATCTCTCATTCAAACCACGAG | + |
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Preference number: 3 (lower is better) Translates to: TVPPLGNRHSNS*ASGDISHSNHE Trigger: CTCGTGGTTTGAATGAGAGATGTCACCAGAGGCTCAGGAGTTTGAATGCCTGTTCCCCAGTGGTGGCACTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| 3UTR GCA 72 bp | TTCCAGAAGCGATGGCACCTGACAGTTGCTCTGCCATaGAGTGTTCAGAGGAGTGAGTCAGTTTGGCAGAGA | + |
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Preference number: 3 (lower is better) Translates to: FQKRWHLTVALP*SVQRSESVWQR Trigger: TCTCTGCCAAACTGACTCACTCCTCTGAACACTGCATGGCAGAGCAACTGTCAGGTGCCATCGCTTCTGGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| 3UTR CCA 72 bp | ATGAGAAAGGCCTGCAGGCCCCAGGCTGCCCTCTTTTaGATTACTCTAGACCACAGCCCTTCCCAATCATTT | + |
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Preference number: 3 (lower is better) Translates to: MRKACRPQAALF*ITLDHSPSQSF Trigger: AAATGATTGGGAAGGGCTGTGGTCTAGAGTAATCCAAAAGAGGGCAGCCTGGGGCCTGCAGGCCTTTCTCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| 3UTR TCA 72 bp | CCTGACAGTTGCTCTGCCATGCAGTGTTCAGAGGAGTaGGTCAGTTTGGCAGAGACAGTGCAAATGGGCTAT | + |
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Preference number: 3 (lower is better) Translates to: PDSCSAMQCSEE*VSLAETVQMGY Trigger: ATAGCCCATTTGCACTGTCTCTGCCAAACTGACTCACTCCTCTGAACACTGCATGGCAGAGCAACTGTCAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| 3UTR TCA 72 bp | ACATACCAGAGTGACTTCAAAGCTGTGGCAATCTTCTaGTTCCTGAAGATGGGCTCAAGGGCATGGGCCAGC | + |
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Preference number: 3 (lower is better) Translates to: TYQSDFKAVAIF*FLKMGSRAWAS Trigger: GCTGGCCCATGCCCTTGAGCCCATCTTCAGGAATCAGAAGATTGCCACAGCTTTGAAGTCACTCTGGTATGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| 3UTR TCA 72 bp | ACTGGGGAACAGGCATTCAAACTCCTGAGCCTCTGGTaGCATCTCTCATTCAAACCACGAGGGCCTCTTTAT | + |
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Preference number: 3 (lower is better) Translates to: TGEQAFKLLSLW*HLSFKPRGPLY Trigger: ATAAAGAGGCCCTCGTGGTTTGAATGAGAGATGTCACCAGAGGCTCAGGAGTTTGAATGCCTGTTCCCCAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| 3UTR TCA 72 bp | CAACACTTTGGCGACCCAGCTCACATCTCTGAGTGTTaGAGGTCATCTAGCTTCATAAGATCCACCACTTGT | + |
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Preference number: 3 (lower is better) Translates to: QHFGDPAHISEC*RSSSFIRSTTC Trigger: ACAAGTGGTGGATCTTATGAAGCTAGATGACCTTCAACACTCAGAGATGTGAGCTGGGTCGCCAAAGTGTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| 3UTR CCA 72 bp | GATCTTAGGAGAAAACTCTTTTCAGGAGGAAGTCCATaGAGGAAGATACAAGCACCATCTATAGGCAGGACA | + |
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Preference number: 3 (lower is better) Translates to: DLRRKLFSGGSP*RKIQAPSIGRT Trigger: TGTCCTGCCTATAGATGGTGCTTGTATCTTCCTCCATGGACTTCCTCCTGAAAAGAGTTTTCTCCTAAGATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| 3UTR TCA 72 bp | TATGTGCGTTTCTTTTGTATATTGTATAGGGAAGTATaGTTGTGCCTATGGGCATGCGCATGCCACAACGCA | + |
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Preference number: 3 (lower is better) Translates to: YVRFFCILYREV*LCLWACACHNA Trigger: TGCGTTGTGGCATGCGCATGCCCATAGGCACAATCATACTTCCCTATACAATATACAAAAGAAACGCACATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| 3UTR GCA 72 bp | CTGCTTAAAAATCCTTATACTTATCATGGACCGAAATaGCTGATCAATCCAGAGGACAAGGTCATAGGGGCT | + |
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Preference number: 3 (lower is better) Translates to: LLKNPYTYHGPK*LINPEDKVIGA Trigger: AGCCCCTATGACCTTGTCCTCTGGATTGATCAGGCATTTCGGTCCATGATAAGTATAAGGATTTTTAAGCAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| 3UTR TCA 72 bp | AGGTCATCTAGCTTCATAAGATCCACCACTTGTCATTaGGCTACTGTTTTAAGACTCCGTCAACACATGAAA | + |
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Preference number: 3 (lower is better) Translates to: RSSSFIRSTTCH*ATVLRLRQHMK Trigger: TTTCATGTGTTGACGGAGTCTTAAAACAGTAGCTCAATGACAAGTGGTGGATCTTATGAAGCTAGATGACCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| 3UTR GCA 72 bp | ATCCTTTCAAACCACAAGCACAATTCTGTCATTACCTaGTTGTTTTGTTTTTACGGAGGTAGAGATGGAACC | + |
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Preference number: 3 (lower is better) Translates to: ILSNHKHNSVIT*LFCFYGGRDGT Trigger: GGTTCCATCTCTACCTCCGTAAAAACAAAACAAGCAGGTAATGACAGAATTGTGCTTGTGGTTTGAAAGGAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| 3UTR-3UTR CAA 90 bp | CCATTGCTTCCCAAACCCAAACTTTATAATAATTTAGTAGCAGGCCTACAAGGTATCCACCACTTGTCATaGAGCTACTGTTTTAAGACT | + |
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Preference number: 3 (lower is better) Translates to: PLLPKPKLYNNLVAGLQGIHHLS*SYCFKT Trigger: AGTCTTAAAACAGTAGCTCAATGACAAGTGGTGGAT...ACCTTGTAGGCCTGCTACTAAATTATTATAAAGTTTGGGTTTGGGAAGCAATGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| 3UTR-3UTR CAA 90 bp | CCATTGCTTCCCAAACCCAAACTTTATAATAATTTAGTAGCAGGCCTACAAGGTTCTGTCATTACCTGCTaGTTTTGTTTTTACGGAGGT | + |
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Preference number: 3 (lower is better) Translates to: PLLPKPKLYNNLVAGLQGSVITC*FCFYGG Trigger: ACCTCCGTAAAAACAAAACAAGCAGGTAATGACAGA...ACCTTGTAGGCCTGCTACTAAATTATTATAAAGTTTGGGTTTGGGAAGCAATGG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| 3UTR-3UTR CAA 90 bp | ACCAACACATCTGGTGAACATAGTGGTTTATATTCGTTCTTTTGCAAATGTGATTTACCCATTAAGCCATaGCTTCCCAAACCCAAACTT | + |
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Preference number: 3 (lower is better) Translates to: TNTSGEHSGLYSFFCKCDLPIKP*LPKPKL Trigger: AAGTTTGGGTTTGGGAAGCAATGGCTTAATGGGTAA...ATCACATTTGCAAAAGAACGAATATAAACCACTATGTTCACCAGATGTGTTGGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| 3UTR-3UTR CAA 90 bp | ACCAACACATCTGGTGAACATAGTGGTTTATATTCGTTCTTTTGCAAATGTGATCATAAGATCCACCACTaGTCATTGAGCTACTGTTTT | + |
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Preference number: 3 (lower is better) Translates to: TNTSGEHSGLYSFFCKCDHKIHH*SLSYCF Trigger: AAAACAGTAGCTCAATGACAAGTGGTGGATCTTATG...ATCACATTTGCAAAAGAACGAATATAAACCACTATGTTCACCAGATGTGTTGGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| CDS-3UTR GCA 90 bp | AGGCCCCAGGCTGCCCTCTTTTGGATTACTCTAGACCACAGCCCTTCCCAATCAGGCTTCCTCTGCTCCTaGTTCTGCCGGTATCGGGCC | + |
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Preference number: 4 (lower is better) Translates to: RPQAALFWITLDHSPSQSGFLCS*FCRYRA Trigger: GGCCCGATACCGGCAGAAGCAGGAGCAGAGGAAGCC...TGATTGGGAAGGGCTGTGGTCTAGAGTAATCCAAAAGAGGGCAGCCTGGGGCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| CDS-3UTR TCA 90 bp | GTTGCTCTGCCATGCAGTGTTCAGAGGAGTGAGTCAGTTTGGCAGAGACAGTGCCTGGTGATCCATGCCTaGGTCGCAAGAATGGAGCAG | + |
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Preference number: 4 (lower is better) Translates to: VALPCSVQRSESVWQRQCLVIHA*VARMEQ Trigger: CTGCTCCATTCTTGCGACTCAGGCATGGATCACCAG...GCACTGTCTCTGCCAAACTGACTCACTCCTCTGAACACTGCATGGCAGAGCAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| CDS-3UTR TCA 90 bp | CCATGTGTCTTGCTAAGTCTCCCAGGCTTGCCTGGAATCCCTGATCTTTCTGCCGGATCAGGAGGAGGATaGCCACCAGGTGCAAAGACT | + |
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Preference number: 4 (lower is better) Translates to: PCVLLSLPGLPGIPDLSAGSGGG*PPGAKT Trigger: AGTCTTTGCACCTGGTGGTCATCCTCCTCCTGATCC...GGCAGAAAGATCAGGGATTCCAGGCAAGCCTGGGAGACTTAGCAAGACACATGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| CDS-3UTR TCA 90 bp | AAGGAAAGAAACCTGGAAGTCACAACAGCCACCAAGGGACCAGAACACAGGGTCCTGAGCCCAGGCTTGTaGGAAAGCCAGACAGGAACA | + |
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Preference number: 4 (lower is better) Translates to: KERNLEVTTATKGPEHRVLSPGL*ESQTGT Trigger: TGTTCCTGTCTGGCTTTCTCACAAGCCTGGGCTCAG...GACCCTGTGTTCTGGTCCCTTGGTGGCTGTTGTGACTTCCAGGTTTCTTTCCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| CDS-3UTR TCA 90 bp | GGCATTCAAACTCCTGAGCCTCTGGTGACATCTCTCATTCAAACCACGAGGGCCCAAGAATGGAGCAGATaGCAACAACTGAGCCCAGGC | + |
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Preference number: 4 (lower is better) Translates to: GIQTPEPLVTSLIQTTRAQEWSR*QQLSPG Trigger: GCCTGGGCTCAGTTGTTGTCATCTGCTCCATTCTTG...GGCCCTCGTGGTTTGAATGAGAGATGTCACCAGAGGCTCAGGAGTTTGAATGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| CDS-3UTR GCA 90 bp | AGAAAGGCCTGCAGGCCCCAGGCTGCCCTCTTTTGGATTACTCTAGACCACAGCAGGATGACCACCAGGTaGAAAGACTTCTGGGAAGAA | + |
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Preference number: 4 (lower is better) Translates to: RKACRPQAALFWITLDHSRMTTR*KDFWEE Trigger: TTCTTCCCAGAAGTCTTTGCACCTGGTGGTCATCCT...GCTGTGGTCTAGAGTAATCCAAAAGAGGGCAGCCTGGGGCCTGCAGGCCTTTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| CDS-3UTR TCA 90 bp | AAGGAAAGAAACCTGGAAGTCACAACAGCCACCAAGGGACCAGAACACAGGGTCTGCTGTTGTAGAAGGTaGACACTGAGCTCAGCACGG | + |
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Preference number: 4 (lower is better) Translates to: KERNLEVTTATKGPEHRVCCCRR*TLSSAR Trigger: CCGTGCTGAGCTCAGTGTTCACCTTCTACAACAGCA...GACCCTGTGTTCTGGTCCCTTGGTGGCTGTTGTGACTTCCAGGTTTCTTTCCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| CDS-3UTR GCA 90 bp | TCATTACCTGCTTGTTTTGTTTTTACGGAGGTAGAGATGGAACCCAGGGCCTGTTCCACCGGCTTCCTCTaGTCCTGCTTCTGCCGGTAT | + |
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Preference number: 4 (lower is better) Translates to: SLPACFVFTEVEMEPRACSTGFL*SCFCRY Trigger: ATACCGGCAGAAGCAGGAGCAGAGGAAGCCGGTGGA...ACAGGCCCTGGGTTCCATCTCTACCTCCGTAAAAACAAAACAAGCAGGTAATGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| 3UTR CAA 72 bp | TTTTTATCCCCATGTGTCTTGCTAAGTCTCCCAGGCTaGCCTGGAATCCCTGATCTTTCTGCCTCAGTTTCC | + |
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Preference number: 4 (lower is better) Translates to: FLSPCVLLSLPG*PGIPDLSASVS Trigger: GGAAACTGAGGCAGAAAGATCAGGGATTCCAGGCAAGCCTGGGAGACTTAGCAAGACACATGGGGATAAAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| CDS-3UTR TCA 90 bp | TCATTACCTGCTTGTTTTGTTTTTACGGAGGTAGAGATGGAACCCAGGGCCTGTCCTTCATTCAACTCTTaGGCACTCGTACCACGGAAG | + |
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Preference number: 4 (lower is better) Translates to: SLPACFVFTEVEMEPRACPSFNS*ALVPRK Trigger: CTTCCGTGGTACGAGTGCTCAAGAGTTGAATGAAGG...ACAGGCCCTGGGTTCCATCTCTACCTCCGTAAAAACAAAACAAGCAGGTAATGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| CDS-3UTR TCA 90 bp | GGCATTCAAACTCCTGAGCCTCTGGTGACATCTCTCATTCAAACCACGAGGGCCTTTTTGTCCAGATCTTaGAGGCCTTCATTCAACTCT | + |
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Preference number: 4 (lower is better) Translates to: GIQTPEPLVTSLIQTTRAFLSRS*RPSFNS Trigger: AGAGTTGAATGAAGGCCTTCAAGATCTGGACAAAAA...GGCCCTCGTGGTTTGAATGAGAGATGTCACCAGAGGCTCAGGAGTTTGAATGCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| CDS-3UTR GCA 90 bp | ACCTACCTCATAACAAGACAAAGTAATGGTTTTGTTTGTATGCTTGCTGGCTTGCAGAAACACAAAGGATaGGCTGAGTCCATTCCAGGT | + |
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Preference number: 4 (lower is better) Translates to: TYLITRQSNGFVCMLAGLQKHKG*AESIPG Trigger: ACCTGGAATGGACTCAGCGCATCCTTTGTGTTTCTG...CAAGCCAGCAAGCATACAAACAAAACCATTACTTTGTCTTGTTATGAGGTAGGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| CDS-3UTR CCA 90 bp | CCATTGCTTCCCAAACCCAAACTTTATAATAATTTAGTAGCAGGCCTACAAGGTCCACGAACAGAACCATaGCCAGAAACACAAAGGATG | + |
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Preference number: 4 (lower is better) Translates to: PLLPKPKLYNNLVAGLQGPRTEP*PETQRM Trigger: CATCCTTTGTGTTTCTGGCCATGGTTCTGTTCGTGG...ACCTTGTAGGCCTGCTACTAAATTATTATAAAGTTTGGGTTTGGGAAGCAATGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| CDS TCA 90 bp | GGTGATCCATGCCTGAGTCGCAAGAATGGAGCAGATGACAACAACTaGGCCCAGGCTTGTGAGAAAGCCAGACAGGAACATCAACGTTTT | + |
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Preference number: 5 (lower is better) Translates to: GDPCLSRKNGADDNN*AQACEKARQEHQRF Trigger: AAAACGTTGATGTTCCTGTCTGGCTTTCTCACAAGCCTGGGCTCAGTTGTTGTCATCTGCTCCATTCTTGCGACTCAGGCATGGATCACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| CDS-3UTR CAA 90 bp | GAAACCTGGAAGTCACAACAGCCACCAAGGGACCAGAACACAGGGTCATCCCATACCGCAGTGACAATATaGAGAAAGATGACATGCAGG | + |
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Preference number: 5 (lower is better) Translates to: ETWKSQQPPRDQNTGSSHTAVTI*RKMTCR Trigger: CCTGCATGTCATCTTTCTCAATATTGTCACTGCGGT...ATGGGATGACCCTGTGTTCTGGTCCCTTGGTGGCTGTTGTGACTTCCAGGTTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| CDS-3UTR CAA 90 bp | AAGGAAAGAAACCTGGAAGTCACAACAGCCACCAAGGGACCAGAACACAGGGTCATAAAATGCCATCCCTaGGAGCATATTCCACCGGCT | + |
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Preference number: 5 (lower is better) Translates to: KERNLEVTTATKGPEHRVIKCHP*EHIPPA Trigger: AGCCGGTGGAATATGCTCCAAGGGATGGCATTTTAT...GACCCTGTGTTCTGGTCCCTTGGTGGCTGTTGTGACTTCCAGGTTTCTTTCCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| CDS TCA 90 bp | TTGGAGATAGCATCTGTAAAGAAAATCCTGCTGGTGATCCATGCCTaGGTCGCAAGAATGGAGCAGATGACAACAACTGAGCCCAGGCTT | + |
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Preference number: 5 (lower is better) Translates to: LEIASVKKILLVIHA*VARMEQMTTTEPRL Trigger: AAGCCTGGGCTCAGTTGTTGTCATCTGCTCCATTCTTGCGACTCAGGCATGGATCACCAGCAGGATTTTCTTTACAGATGCTATCTCCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| CDS CCA 72 bp | GATAAAGCTTCTGGGAGAGCTTGTCTGAGAGATGGTTaGACTCGGCATTCCCCACGAACAGAACCATGGCCA | + |
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Preference number: 6 (lower is better) Translates to: DKASGRACLRDG*TRHSPRTEPWP Trigger: TGGCCATGGTTCTGTTCGTGGGGAATGCCGAGTCCAACCATCTCTCAGACAAGCTCTCCCAGAAGCTTTATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| CDS TCA 72 bp | TGCCTGAGTCGCAAGAATGGAGCAGATGACAACAACTaGGCCCAGGCTTGTGAGAAAGCCAGACAGGAACAT | + |
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Preference number: 6 (lower is better) Translates to: CLSRKNGADDNN*AQACEKARQEH Trigger: ATGTTCCTGTCTGGCTTTCTCACAAGCCTGGGCTCAGTTGTTGTCATCTGCTCCATTCTTGCGACTCAGGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| CDS TCA 72 bp | GCATCTGTAAAGAAAATCCTGCTGGTGATCCATGCCTaGGTCGCAAGAATGGAGCAGATGACAACAACTGAG | + |
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Preference number: 6 (lower is better) Translates to: ASVKKILLVIHA*VARMEQMTTTE Trigger: CTCAGTTGTTGTCATCTGCTCCATTCTTGCGACTCAGGCATGGATCACCAGCAGGATTTTCTTTACAGATGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| CDS CCA 72 bp | ACGAGTATCCGTAAGTGTGGGTTGTTCTCTTGTTTGTaGTATCTGGATAAAGCTTCTGGGAGAGCTTGTCTG | + |
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Preference number: 6 (lower is better) Translates to: TSIRKCGLFSCL*YLDKASGRACL Trigger: CAGACAAGCTCTCCCAGAAGCTTTATCCAGATACCACAAACAAGAGAACAACCCACACTTACGGATACTCGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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| CDS CAA 72 bp | AGGATGACCACCAGGTGCAAAGACTTCTGGGAAGAATaGTCCAATATCCCTAAAACTTCAAAGTTTTTGTCC | + |
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Preference number: 6 (lower is better) Translates to: RMTTRCKDFWEE*SNIPKTSKFLS Trigger: GGACAAAAACTTTGAAGTTTTAGGGATATTGGACAATTCTTCCCAGAAGTCTTTGCACCTGGTGGTCATCCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053716.8 |
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