Pregenerated sensors for CLRN2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000049530Ensembl transcript IDs: ENSMUST00000053250.5
Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 72 bp | TCTGGCCCAACCACCCCTTTAGTCCACTACCAAGAATaGGGACACTGTGGAACGAGAAAGCTGGAAAATGCA | + |
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Preference number: 3 (lower is better) Translates to: SGPTTPLVHYQE*GHCGTRKLENA Trigger: TGCATTTTCCAGCTTTCTCGTTCCACAGTGTCCCCATTCTTGGTAGTGGACTAAAGGGGTGGTTGGGCCAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053250.5 |
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| 3UTR CCA 72 bp | ACTACCAAGAATGGGGACACTGTGGAACGAGAAAGCTaGAAAATGCAAACCTGTTTCCCATTGACGTCACAA | + |
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Preference number: 3 (lower is better) Translates to: TTKNGDTVERES*KMQTCFPLTSQ Trigger: TTGTGACGTCAATGGGAAACAGGTTTGCATTTTCCAGCTTTCTCGTTCCACAGTGTCCCCATTCTTGGTAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053250.5 |
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| CDS-3UTR CCA 90 bp | TTCCTTTCTGGCCCAACCACCCCTTTAGTCCACTACCAAGAATGGGGACACTGTACCAAGTTTGCTGCGTaGGCTGAGGCGCTCGCCACG | + |
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Preference number: 4 (lower is better) Translates to: FLSGPTTPLVHYQEWGHCTKFAA*AEALAT Trigger: CGTGGCGAGCGCCTCAGCCCACGCAGCAAACTTGGT...ACAGTGTCCCCATTCTTGGTAGTGGACTAAAGGGGTGGTTGGGCCAGAAAGGAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053250.5 |
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| CDS-3UTR TCA 90 bp | AGTTCATCTCCAAGGGCATCAAAAGGAAGCACAAGAACCCTGGTCATCAGGAGACGTGGAGGCCTGCATTaGGCTCCTTCACCAGATGCG | + |
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Preference number: 4 (lower is better) Translates to: SSSPRASKGSTRTLVIRRRGGLH*APSPDA Trigger: CGCATCTGGTGAAGGAGCTCAATGCAGGCCTCCACG...TCTCCTGATGACCAGGGTTCTTGTGCTTCCTTTTGATGCCCTTGGAGATGAACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053250.5 |
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| CDS-3UTR GCA 90 bp | AGTTCATCTCCAAGGGCATCAAAAGGAAGCACAAGAACCCTGGTCATCAGGAGACGCATTGCCGCACCTTaGATCCTCGGAAGAGCCCGT | + |
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Preference number: 4 (lower is better) Translates to: SSSPRASKGSTRTLVIRRRIAAP*ILGRAR Trigger: ACGGGCTCTTCCGAGGATGCAAGGTGCGGCAATGCG...TCTCCTGATGACCAGGGTTCTTGTGCTTCCTTTTGATGCCCTTGGAGATGAACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053250.5 |
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| CDS-3UTR TCA 90 bp | ACCCCTTTAGTCCACTACCAAGAATGGGGACACTGTGGAACGAGAAAGCTGGAACTGGGTCTGTGGCATTaGCCAAATCCACTCCAGTCT | + |
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Preference number: 4 (lower is better) Translates to: TPLVHYQEWGHCGTRKLELGLWH*PNPLQS Trigger: AGACTGGAGTGGATTTGGTCAATGCCACAGACCCAG...TTCCAGCTTTCTCGTTCCACAGTGTCCCCATTCTTGGTAGTGGACTAAAGGGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053250.5 |
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| CDS-3UTR TCA 90 bp | TTCCTTTCTGGCCCAACCACCCCTTTAGTCCACTACCAAGAATGGGGACACTGTCTTTCTGTCAGGTCGTaGAATTTCACCGCAGCCATG | + |
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Preference number: 4 (lower is better) Translates to: FLSGPTTPLVHYQEWGHCLSVRS*NFTAAM Trigger: CATGGCTGCGGTGAAATTTCACGACCTGACAGAAAG...ACAGTGTCCCCATTCTTGGTAGTGGACTAAAGGGGTGGTTGGGCCAGAAAGGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053250.5 |
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| CDS-3UTR TCA 90 bp | CCAACCACCCCTTTAGTCCACTACCAAGAATGGGGACACTGTGGAACGAGAAAGGAAGGGGAATTTGACTaGTTGCCACCACAACCAAGT | + |
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Preference number: 4 (lower is better) Translates to: PTTPLVHYQEWGHCGTRKEGEFD*LPPQPS Trigger: ACTTGGTTGTGGTGGCAATCAGTCAAATTCCCCTTC...CTTTCTCGTTCCACAGTGTCCCCATTCTTGGTAGTGGACTAAAGGGGTGGTTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053250.5 |
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| CDS-3UTR TCA 90 bp | CAGTTCATCTCCAAGGGCATCAAAAGGAAGCACAAGAACCCTGGTCATCAGGAGTCTGGAAGGGGAATTTaGCTGATTGCCACCACAACC | + |
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Preference number: 4 (lower is better) Translates to: QFISKGIKRKHKNPGHQESGRGI*LIATTT Trigger: GGTTGTGGTGGCAATCAGTCAAATTCCCCTTCCAGA...CTCCTGATGACCAGGGTTCTTGTGCTTCCTTTTGATGCCCTTGGAGATGAACTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053250.5 |
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| CDS-3UTR GCA 90 bp | CCTTTAGTCCACTACCAAGAATGGGGACACTGTGGAACGAGAAAGCTGGAAAATTGTGACGTGGAGGCCTaGATTGAGCTCCTTCACCAG | + |
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Preference number: 4 (lower is better) Translates to: PLVHYQEWGHCGTRKLENCDVEA*IELLHQ Trigger: CTGGTGAAGGAGCTCAATGCAGGCCTCCACGTCACA...ATTTTCCAGCTTTCTCGTTCCACAGTGTCCCCATTCTTGGTAGTGGACTAAAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053250.5 |
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| CDS-3UTR CCA 90 bp | CAAGAATGGGGACACTGTGGAACGAGAAAGCTGGAAAATGCAAACCTGTTTCCCGCCTCTCCTGGAAGTTaGCGATCCTTTCTGTCAGGT | + |
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Preference number: 4 (lower is better) Translates to: QEWGHCGTRKLENANLFPASPGS*RSFLSG Trigger: ACCTGACAGAAAGGATCGCCAACTTCCAGGAGAGGC...GGGAAACAGGTTTGCATTTTCCAGCTTTCTCGTTCCACAGTGTCCCCATTCTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053250.5 |
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| CDS-3UTR TCA 90 bp | TACCAAGAATGGGGACACTGTGGAACGAGAAAGCTGGAAAATGCAAACCTGTTTATTTCACCGCAGCCATaGAGCTGCCGATGGCTAGTG | + |
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Preference number: 4 (lower is better) Translates to: YQEWGHCGTRKLENANLFISPQP*SCRWLV Trigger: CACTAGCCATCGGCAGCTTCATGGCTGCGGTGAAAT...AAACAGGTTTGCATTTTCCAGCTTTCTCGTTCCACAGTGTCCCCATTCTTGGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053250.5 |
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| CDS-3UTR GCA 90 bp | TTCCTTTCTGGCCCAACCACCCCTTTAGTCCACTACCAAGAATGGGGACACTGTGGGAATTTGACTGATTaGCACCACAACCAAGTTTGC | + |
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Preference number: 4 (lower is better) Translates to: FLSGPTTPLVHYQEWGHCGNLTD*HHNQVC Trigger: GCAAACTTGGTTGTGGTGGCAATCAGTCAAATTCCC...ACAGTGTCCCCATTCTTGGTAGTGGACTAAAGGGGTGGTTGGGCCAGAAAGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053250.5 |
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| CDS-3UTR CCA 90 bp | CCAACCACCCCTTTAGTCCACTACCAAGAATGGGGACACTGTGGAACGAGAAAGGAATTTGACCAGTTCTaGGTCTGTGGCATTGACCAA | + |
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Preference number: 4 (lower is better) Translates to: PTTPLVHYQEWGHCGTRKEFDQF*VCGIDQ Trigger: TTGGTCAATGCCACAGACCCAGAACTGGTCAAATTC...CTTTCTCGTTCCACAGTGTCCCCATTCTTGGTAGTGGACTAAAGGGGTGGTTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053250.5 |
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| CDS-3UTR GCA 90 bp | CCCTTTAGTCCACTACCAAGAATGGGGACACTGTGGAACGAGAAAGCTGGAAAAAGCTCCTTCACCAGATaGGGGAAGATTGTAAATTGG | + |
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Preference number: 4 (lower is better) Translates to: PFSPLPRMGTLWNEKAGKSSFTR*GKIVNW Trigger: CCAATTTACAATCTTCCCGCATCTGGTGAAGGAGCT...TTTTCCAGCTTTCTCGTTCCACAGTGTCCCCATTCTTGGTAGTGGACTAAAGGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000053250.5 |
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| CDS-3UTR TCA 90 bp | TTTAGTCCACTACCAAGAATGGGGACACTGTGGAACGAGAAAGCTGGAAAATGCAAATCCACTCCAGTCTaGCACAAGATTTTCCCACTC | + |
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Preference number: 4 (lower is better) Translates to: FSPLPRMGTLWNEKAGKCKSTPV*HKIFPL Trigger: GAGTGGGAAAATCTTGTGTCAGACTGGAGTGGATTT...GCATTTTCCAGCTTTCTCGTTCCACAGTGTCCCCATTCTTGGTAGTGGACTAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053250.5 |
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| CDS-3UTR CAA 90 bp | TTCCTTTCTGGCCCAACCACCCCTTTAGTCCACTACCAAGAATGGGGACACTGTCCGCATTGCCGCACCTaGCATCCTCGGAAGAGCCCG | + |
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Preference number: 5 (lower is better) Translates to: FLSGPTTPLVHYQEWGHCPHCRT*HPRKSP Trigger: CGGGCTCTTCCGAGGATGCAAGGTGCGGCAATGCGG...ACAGTGTCCCCATTCTTGGTAGTGGACTAAAGGGGTGGTTGGGCCAGAAAGGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053250.5 |
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| CDS CCA 90 bp | GCATTGAGCTCCTTCACCAGATGCGGGAAGATTGTAAATTGGGACTaGCGTCCCCCAAGTCCGCATTGCCGCACCTTGCATCCTCGGAAG | + |
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Preference number: 5 (lower is better) Translates to: ALSSFTRCGKIVNWD*RPPSPHCRTLHPRK Trigger: CTTCCGAGGATGCAAGGTGCGGCAATGCGGACTTGGGGGACGCCAGTCCCAATTTACAATCTTCCCGCATCTGGTGAAGGAGCTCAATGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053250.5 |
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| CDS TCA 90 bp | AGTTGGCGATCCTTTCTGTCAGGTCGTGAAATTTCACCGCAGCCATaGAGCTGCCGATGGCTAGTGCCACGACTCCACCTGCGAGGACAT | + |
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Preference number: 5 (lower is better) Translates to: SWRSFLSGREISPQP*SCRWLVPRLHLRGH Trigger: ATGTCCTCGCAGGTGGAGTCGTGGCACTAGCCATCGGCAGCTTCATGGCTGCGGTGAAATTTCACGACCTGACAGAAAGGATCGCCAACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053250.5 |
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| CDS GCA 90 bp | GGCCAACGCCAGGAAGAGGAGCAAGAGAATTGTGACGTGGAGGCCTaGATTGAGCTCCTTCACCAGATGCGGGAAGATTGTAAATTGGGA | + |
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Preference number: 5 (lower is better) Translates to: GQRQEEEQENCDVEA*IELLHQMREDCKLG Trigger: TCCCAATTTACAATCTTCCCGCATCTGGTGAAGGAGCTCAATGCAGGCCTCCACGTCACAATTCTCTTGCTCCTCTTCCTGGCGTTGGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053250.5 |
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| CDS-3UTR CAA 90 bp | ACTGTGGAACGAGAAAGCTGGAAAATGCAAACCTGTTTCCCATTGACGTCACAAACGTGGAGGCCTGCATaGAGCTCCTTCACCAGATGC | + |
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Preference number: 5 (lower is better) Translates to: TVERESWKMQTCFPLTSQTWRPA*SSFTRC Trigger: GCATCTGGTGAAGGAGCTCAATGCAGGCCTCCACGT...TTGTGACGTCAATGGGAAACAGGTTTGCATTTTCCAGCTTTCTCGTTCCACAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053250.5 |
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| CDS-3UTR CAA 90 bp | TTTAGTCCACTACCAAGAATGGGGACACTGTGGAACGAGAAAGCTGGAAAATGCTCTGGGTCTGTGGCATaGACCAAATCCACTCCAGTC | + |
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Preference number: 5 (lower is better) Translates to: FSPLPRMGTLWNEKAGKCSGSVA*TKSTPV Trigger: GACTGGAGTGGATTTGGTCAATGCCACAGACCCAGA...GCATTTTCCAGCTTTCTCGTTCCACAGTGTCCCCATTCTTGGTAGTGGACTAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053250.5 |
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| CDS-3UTR CAA 90 bp | CCTTTAGTCCACTACCAAGAATGGGGACACTGTGGAACGAGAAAGCTGGAAAATTTCTGGAAGGGGAATTaGACTGATTGCCACCACAAC | + |
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Preference number: 5 (lower is better) Translates to: PLVHYQEWGHCGTRKLENFWKGN*TDCHHN Trigger: GTTGTGGTGGCAATCAGTCAAATTCCCCTTCCAGAA...ATTTTCCAGCTTTCTCGTTCCACAGTGTCCCCATTCTTGGTAGTGGACTAAAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053250.5 |
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| CDS TCA 90 bp | CATATCCAAAATGATTCTTCATACTGTTCTTCCACCACTACAAACTaGAAGAGCCTCTCCTGGAAGTTGGCGATCCTTTCTGTCAGGTCG | + |
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Preference number: 5 (lower is better) Translates to: HIQNDSSYCSSTTTN*KSLSWKLAILSVRS Trigger: CGACCTGACAGAAAGGATCGCCAACTTCCAGGAGAGGCTCTTTCAGTTTGTAGTGGTGGAAGAACAGTATGAAGAATCATTTTGGATATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053250.5 |
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| CDS-3UTR CAA 90 bp | CACTACCAAGAATGGGGACACTGTGGAACGAGAAAGCTGGAAAATGCAAACCTGTCTTCCATTTTAGTCTaGATTTCTGGAAGGGGAATT | + |
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Preference number: 5 (lower is better) Translates to: HYQEWGHCGTRKLENANLSSILV*ISGRGI Trigger: AATTCCCCTTCCAGAAATCAAGACTAAAATGGAAGA...CAGGTTTGCATTTTCCAGCTTTCTCGTTCCACAGTGTCCCCATTCTTGGTAGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000053250.5 |
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| CDS GCA 72 bp | GGGACTGGCGTCCCCCAAGTCCGCATTGCCGCACCTTaGATCCTCGGAAGAGCCCGTAGTAAATGTCCCCGA | + |
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Preference number: 6 (lower is better) Translates to: GTGVPQVRIAAP*ILGRARSKCPR Trigger: TCGGGGACATTTACTACGGGCTCTTCCGAGGATGCAAGGTGCGGCAATGCGGACTTGGGGGACGCCAGTCCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053250.5 |
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| CDS CAA 90 bp | ATGCGGGAAGATTGTAAATTGGGACTGGCGTCCCCCAAGTCCGCATaGCCGCACCTTGCATCCTCGGAAGAGCCCGTAGTAAATGTCCCC | + |
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Preference number: 6 (lower is better) Translates to: MREDCKLGLASPKSA*PHLASSEEPVVNVP Trigger: GGGGACATTTACTACGGGCTCTTCCGAGGATGCAAGGTGCGGCAATGCGGACTTGGGGGACGCCAGTCCCAATTTACAATCTTCCCGCAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053250.5 |
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| CDS CCA 72 bp | TTGAGCTCCTTCACCAGATGCGGGAAGATTGTAAATTaGGACTGGCGTCCCCCAAGTCCGCATTGCCGCACC | + |
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Preference number: 6 (lower is better) Translates to: LSSFTRCGKIVN*DWRPPSPHCRT Trigger: GGTGCGGCAATGCGGACTTGGGGGACGCCAGTCCCAATTTACAATCTTCCCGCATCTGGTGAAGGAGCTCAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053250.5 |
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| CDS CAA 72 bp | GATTGTAAATTGGGACTGGCGTCCCCCAAGTCCGCATaGCCGCACCTTGCATCCTCGGAAGAGCCCGTAGTA | + |
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Preference number: 6 (lower is better) Translates to: DCKLGLASPKSA*PHLASSEEPVV Trigger: TACTACGGGCTCTTCCGAGGATGCAAGGTGCGGCAATGCGGACTTGGGGGACGCCAGTCCCAATTTACAATC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053250.5 |
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| CDS TCA 72 bp | TCCTTTCTGTCAGGTCGTGAAATTTCACCGCAGCCATaGAGCTGCCGATGGCTAGTGCCACGACTCCACCTG | + |
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Preference number: 6 (lower is better) Translates to: SFLSGREISPQP*SCRWLVPRLHL Trigger: CAGGTGGAGTCGTGGCACTAGCCATCGGCAGCTTCATGGCTGCGGTGAAATTTCACGACCTGACAGAAAGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053250.5 |
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| CDS CAA 72 bp | ATTGAGCTCCTTCACCAGATGCGGGAAGATTGTAAATaGGGACTGGCGTCCCCCAAGTCCGCATTGCCGCAC | + |
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Preference number: 6 (lower is better) Translates to: IELLHQMREDCK*GLASPKSALPH Trigger: GTGCGGCAATGCGGACTTGGGGGACGCCAGTCCCAATTTACAATCTTCCCGCATCTGGTGAAGGAGCTCAAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053250.5 |
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| CDS TCA 72 bp | CTCTCCTGGAAGTTGGCGATCCTTTCTGTCAGGTCGTaGAATTTCACCGCAGCCATGAAGCTGCCGATGGCT | + |
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Preference number: 6 (lower is better) Translates to: LSWKLAILSVRS*NFTAAMKLPMA Trigger: AGCCATCGGCAGCTTCATGGCTGCGGTGAAATTTCACGACCTGACAGAAAGGATCGCCAACTTCCAGGAGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053250.5 |
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| CDS GCA 72 bp | CAGGAAGAGGAGCAAGAGAATTGTGACGTGGAGGCCTaGATTGAGCTCCTTCACCAGATGCGGGAAGATTGT | + |
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Preference number: 6 (lower is better) Translates to: QEEEQENCDVEA*IELLHQMREDC Trigger: ACAATCTTCCCGCATCTGGTGAAGGAGCTCAATGCAGGCCTCCACGTCACAATTCTCTTGCTCCTCTTCCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053250.5 |
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| CDS CAA 90 bp | AACGCCAGGAAGAGGAGCAAGAGAATTGTGACGTGGAGGCCTGCATaGAGCTCCTTCACCAGATGCGGGAAGATTGTAAATTGGGACTGG | + |
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Preference number: 6 (lower is better) Translates to: NARKRSKRIVTWRPA*SSFTRCGKIVNWDW Trigger: CCAGTCCCAATTTACAATCTTCCCGCATCTGGTGAAGGAGCTCAATGCAGGCCTCCACGTCACAATTCTCTTGCTCCTCTTCCTGGCGTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053250.5 |
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| CDS GCA 72 bp | GACATTCCAAAGGCAGATGCCACCAGGGCCATTGACTaGTCTGTAGGGGACCTGAATGATGTTGAGAATAGC | + |
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Preference number: 6 (lower is better) Translates to: DIPKADATRAID*SVGDLNDVENS Trigger: GCTATTCTCAACATCATTCAGGTCCCCTACAGAGCAGTCAATGGCCCTGGTGGCATCTGCCTTTGGAATGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053250.5 |
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