RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CLPTM1L (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021610

Ensembl transcript IDs: ENSMUST00000022102.9

Found 87 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CACTGGCTGCCATGGGACACTCATGCACTGAGAGCTACCCTTGGGTaGCTGCCCACTGGCACAATCACCAAGACCCAAGTTCATGTGGGG +
Preference number: 1 (lower is better)
Translates to: HWLPWDTHALRATLG*LPTGTITKTQVHVG
Trigger: CCCCACATGAACTTGGGTCTTGGTGATTGTGCCAGTGGGCAGTCACCCAAGGGTAGCTCTCAGTGCATGAGTGTCCCATGGCAGCCAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
3UTR GCA 90 bp TACCCTTGCGTGCTAAGGTGTCCACTGGCTGCCATGGGACACTCATaGACTGAGAGCTACCCTTGGGTGACTGCCCACTGGCACAATCAC +
Preference number: 1 (lower is better)
Translates to: YPCVLRCPLAAMGHS*TESYPWVTAHWHNH
Trigger: GTGATTGTGCCAGTGGGCAGTCACCCAAGGGTAGCTCTCAGTGCATGAGTGTCCCATGGCAGCCAGTGGACACCTTAGCACGCAAGGGTA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
3UTR TCA 90 bp TTGCGTGCTAAGGTGTCCACTGGCTGCCATGGGACACTCATGCACTaGGAGCTACCCTTGGGTGACTGCCCACTGGCACAATCACCAAGA +
Preference number: 1 (lower is better)
Translates to: LRAKVSTGCHGTLMH*ELPLGDCPLAQSPR
Trigger: TCTTGGTGATTGTGCCAGTGGGCAGTCACCCAAGGGTAGCTCTCAGTGCATGAGTGTCCCATGGCAGCCAGTGGACACCTTAGCACGCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
3UTR GCA 90 bp GCACTTGGACAAGCTGACGTGGAAATCCACCATGCTCCCTACCCTTaGGTGCTAAGGTGTCCACTGGCTGCCATGGGACACTCATGCACT +
Preference number: 1 (lower is better)
Translates to: ALGQADVEIHHAPYP*VLRCPLAAMGHSCT
Trigger: AGTGCATGAGTGTCCCATGGCAGCCAGTGGACACCTTAGCACGCAAGGGTAGGGAGCATGGTGGATTTCCACGTCAGCTTGTCCAAGTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
3UTR CCA 90 bp TGTCCACTGGCTGCCATGGGACACTCATGCACTGAGAGCTACCCTTaGGTGACTGCCCACTGGCACAATCACCAAGACCCAAGTTCATGT +
Preference number: 1 (lower is better)
Translates to: CPLAAMGHSCTESYP*VTAHWHNHQDPSSC
Trigger: ACATGAACTTGGGTCTTGGTGATTGTGCCAGTGGGCAGTCACCCAAGGGTAGCTCTCAGTGCATGAGTGTCCCATGGCAGCCAGTGGACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
3UTR CCA 90 bp TGCCCACTGGCACAATCACCAAGACCCAAGTTCATGTGGGGTGTATaGTTAAGTGCTATGGTTCCTTCTGAAACACGAGAAGAGAGGGTG +
Preference number: 1 (lower is better)
Translates to: CPLAQSPRPKFMWGV*LSAMVPSETREERV
Trigger: CACCCTCTCTTCTCGTGTTTCAGAAGGAACCATAGCACTTAACCATACACCCCACATGAACTTGGGTCTTGGTGATTGTGCCAGTGGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
3UTR TCA 90 bp GACTTTTGTGTATGTGAAATCCACATAAGGAGCACTTGGACAAGCTaGCGTGGAAATCCACCATGCTCCCTACCCTTGCGTGCTAAGGTG +
Preference number: 1 (lower is better)
Translates to: DFCVCEIHIRSTWTS*RGNPPCSLPLRAKV
Trigger: CACCTTAGCACGCAAGGGTAGGGAGCATGGTGGATTTCCACGTCAGCTTGTCCAAGTGCTCCTTATGTGGATTTCACATACACAAAAGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
3UTR-3UTR CCA 90 bp AGGTGTCCACTGGCTGCCATGGGACACTCATGCACTGAGAGCTACCCTTGGGTGCAGTACAGTGCCGCCTaGGAGCCTGGGCCGAGATGC +
Preference number: 2 (lower is better)
Translates to: RCPLAAMGHSCTESYPWVQYSAA*EPGPRC
Trigger: GCATCTCGGCCCAGGCTCCCAGGCGGCACTGTACTG...CACCCAAGGGTAGCTCTCAGTGCATGAGTGTCCCATGGCAGCCAGTGGACACCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
3UTR-3UTR CCA 90 bp TGCTCCCTACCCTTGCGTGCTAAGGTGTCCACTGGCTGCCATGGGACACTCATGATGCTCAGAGGGATTTaGCAACGCAGAAGATGTGGT +
Preference number: 2 (lower is better)
Translates to: CSLPLRAKVSTGCHGTLMMLRGI*QRRRCG
Trigger: ACCACATCTTCTGCGTTGCCAAATCCCTCTGAGCAT...CATGAGTGTCCCATGGCAGCCAGTGGACACCTTAGCACGCAAGGGTAGGGAGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
3UTR-3UTR GCA 90 bp GTGCTAAGGTGTCCACTGGCTGCCATGGGACACTCATGCACTGAGAGCTACCCTAGGGATACTGAGAAATaGTCAGAGGGATTTGGCAAC +
Preference number: 2 (lower is better)
Translates to: VLRCPLAAMGHSCTESYPRDTEK*SEGFGN
Trigger: GTTGCCAAATCCCTCTGAGCATTTCTCAGTATCCCT...AGGGTAGCTCTCAGTGCATGAGTGTCCCATGGCAGCCAGTGGACACCTTAGCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
3UTR-3UTR TCA 90 bp GGGAAAAAGAGCCATTTGATCCCAGAGTCCGTACAGAACGACTTTTGTGTATGTAGAGCTACCCTTGGGTaGCTGCCCACTGGCACAATC +
Preference number: 2 (lower is better)
Translates to: GKKSHLIPESVQNDFCVCRATLG*LPTGTI
Trigger: GATTGTGCCAGTGGGCAGTCACCCAAGGGTAGCTCT...ACATACACAAAAGTCGTTCTGTACGGACTCTGGGATCAAATGGCTCTTTTTCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
3UTR-3UTR CCA 90 bp TGGTTAAGTGCTATGGTTCCTTCTGAAACACGAGAAGAGAGGGTGCTCAGGGATGCAACGCAGAAGATGTaGTATCTAGGAATTTTCCCG +
Preference number: 2 (lower is better)
Translates to: WLSAMVPSETREERVLRDATQKM*YLGIFP
Trigger: CGGGAAAATTCCTAGATACCACATCTTCTGCGTTGC...ATCCCTGAGCACCCTCTCTTCTCGTGTTTCAGAAGGAACCATAGCACTTAACCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
3UTR GCA 72 bp TTCCCGAAGCCCCCAGGAATACTCATGGCCCAACTGTaGTGTGCAGTACAGTGCCGCCTGGGAGCCTGGGCC +
Preference number: 3 (lower is better)
Translates to: FPKPPGILMAQL*CAVQCRLGAWA
Trigger: GGCCCAGGCTCCCAGGCGGCACTGTACTGCACAGCACAGTTGGGCCATGAGTATTCCTGGGGGCTTCGGGAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
3UTR GCA 72 bp GTGCTAAGGTGTCCACTGGCTGCCATGGGACACTCATaGACTGAGAGCTACCCTTGGGTGACTGCCCACTGG +
Preference number: 3 (lower is better)
Translates to: VLRCPLAAMGHS*TESYPWVTAHW
Trigger: CCAGTGGGCAGTCACCCAAGGGTAGCTCTCAGTGCATGAGTGTCCCATGGCAGCCAGTGGACACCTTAGCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
3UTR TCA 72 bp AAGGTGTCCACTGGCTGCCATGGGACACTCATGCACTaGGAGCTACCCTTGGGTGACTGCCCACTGGCACAA +
Preference number: 3 (lower is better)
Translates to: KVSTGCHGTLMH*ELPLGDCPLAQ
Trigger: TTGTGCCAGTGGGCAGTCACCCAAGGGTAGCTCTCAGTGCATGAGTGTCCCATGGCAGCCAGTGGACACCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
3UTR GCA 72 bp CAAGCTGACGTGGAAATCCACCATGCTCCCTACCCTTaGGTGCTAAGGTGTCCACTGGCTGCCATGGGACAC +
Preference number: 3 (lower is better)
Translates to: QADVEIHHAPYP*VLRCPLAAMGH
Trigger: GTGTCCCATGGCAGCCAGTGGACACCTTAGCACGCAAGGGTAGGGAGCATGGTGGATTTCCACGTCAGCTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
3UTR CCA 72 bp TCATGCACTGAGAGCTACCCTTGGGTGACTGCCCACTaGCACAATCACCAAGACCCAAGTTCATGTGGGGTG +
Preference number: 3 (lower is better)
Translates to: SCTESYPWVTAH*HNHQDPSSCGV
Trigger: CACCCCACATGAACTTGGGTCTTGGTGATTGTGCCAGTGGGCAGTCACCCAAGGGTAGCTCTCAGTGCATGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
3UTR TCA 72 bp GTATGTGAAATCCACATAAGGAGCACTTGGACAAGCTaGCGTGGAAATCCACCATGCTCCCTACCCTTGCGT +
Preference number: 3 (lower is better)
Translates to: VCEIHIRSTWTS*RGNPPCSLPLR
Trigger: ACGCAAGGGTAGGGAGCATGGTGGATTTCCACGTCAGCTTGTCCAAGTGCTCCTTATGTGGATTTCACATAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
3UTR GCA 72 bp ACACGAGAAGAGAGGGTGCTCAGGGATACTGAGAAATaGTCAGAGGGATTTGGCAACGCAGAAGATGTGGTA +
Preference number: 3 (lower is better)
Translates to: TREERVLRDTEK*SEGFGNAEDVV
Trigger: TACCACATCTTCTGCGTTGCCAAATCCCTCTGAGCATTTCTCAGTATCCCTGAGCACCCTCTCTTCTCGTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
3UTR CCA 72 bp GCACAATCACCAAGACCCAAGTTCATGTGGGGTGTATaGTTAAGTGCTATGGTTCCTTCTGAAACACGAGAA +
Preference number: 3 (lower is better)
Translates to: AQSPRPKFMWGV*LSAMVPSETRE
Trigger: TTCTCGTGTTTCAGAAGGAACCATAGCACTTAACCATACACCCCACATGAACTTGGGTCTTGGTGATTGTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS-3UTR CCA 90 bp CATGCTCCCTACCCTTGCGTGCTAAGGTGTCCACTGGCTGCCATGGGACACTCAAGGGCTGGATGCAGTTaGAGTCACCCGAGCACGGAC +
Preference number: 4 (lower is better)
Translates to: HAPYPCVLRCPLAAMGHSRAGCS*SHPSTD
Trigger: GTCCGTGCTCGGGTGACTCCAACTGCATCCAGCCCT...TGAGTGTCCCATGGCAGCCAGTGGACACCTTAGCACGCAAGGGTAGGGAGCATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS-3UTR TCA 90 bp GTGCTAAGGTGTCCACTGGCTGCCATGGGACACTCATGCACTGAGAGCTACCCTAGACCACATCATCTCTaGAACAGGCCAGCCGGTGGG +
Preference number: 4 (lower is better)
Translates to: VLRCPLAAMGHSCTESYPRPHHL*NRPAGG
Trigger: CCCACCGGCTGGCCTGTTTCAGAGATGATGTGGTCT...AGGGTAGCTCTCAGTGCATGAGTGTCCCATGGCAGCCAGTGGACACCTTAGCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS-3UTR GCA 90 bp CATGCTCCCTACCCTTGCGTGCTAAGGTGTCCACTGGCTGCCATGGGACACTCAATGACCCAGCAGGTATaGACCACGTACACCAGGAAC +
Preference number: 4 (lower is better)
Translates to: HAPYPCVLRCPLAAMGHSMTQQV*TTYTRN
Trigger: GTTCCTGGTGTACGTGGTGCATACCTGCTGGGTCAT...TGAGTGTCCCATGGCAGCCAGTGGACACCTTAGCACGCAAGGGTAGGGAGCATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS-3UTR GCA 90 bp AGGTGTCCACTGGCTGCCATGGGACACTCATGCACTGAGAGCTACCCTTGGGTGGTCCACATTGTTCTCTaGACCAAGGCTGGACCGTGT +
Preference number: 4 (lower is better)
Translates to: RCPLAAMGHSCTESYPWVVHIVL*TKAGPC
Trigger: ACACGGTCCAGCCTTGGTGCAGAGAACAATGTGGAC...CACCCAAGGGTAGCTCTCAGTGCATGAGTGTCCCATGGCAGCCAGTGGACACCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS-3UTR CCA 90 bp GTGCTAAGGTGTCCACTGGCTGCCATGGGACACTCATGCACTGAGAGCTACCCTGTAGGACACAGTGAGTaGCAGCTCGGTGGTAGATCG +
Preference number: 4 (lower is better)
Translates to: VLRCPLAAMGHSCTESYPVGHSE*QLGGRS
Trigger: CGATCTACCACCGAGCTGCCACTCACTGTGTCCTAC...AGGGTAGCTCTCAGTGCATGAGTGTCCCATGGCAGCCAGTGGACACCTTAGCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS-3UTR TCA 90 bp GTGCTAAGGTGTCCACTGGCTGCCATGGGACACTCATGCACTGAGAGCTACCCTTGCTCAGCTGGTCAATaGACAGGATGGGGAGGTAGT +
Preference number: 4 (lower is better)
Translates to: VLRCPLAAMGHSCTESYPCSAGQ*TGWGGS
Trigger: ACTACCTCCCCATCCTGTTCATTGACCAGCTGAGCA...AGGGTAGCTCTCAGTGCATGAGTGTCCCATGGCAGCCAGTGGACACCTTAGCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS-3UTR TCA 90 bp GGGAAAAAGAGCCATTTGATCCCAGAGTCCGTACAGAACGACTTTTGTGTATGTGCGCAGCCGCCCCAATaGGATCTTGTCGTAGGACAC +
Preference number: 4 (lower is better)
Translates to: GKKSHLIPESVQNDFCVCAQPPQ*DLVVGH
Trigger: GTGTCCTACGACAAGATCTCATTGGGGCGGCTGCGC...ACATACACAAAAGTCGTTCTGTACGGACTCTGGGATCAAATGGCTCTTTTTCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS-3UTR GCA 90 bp TGGTTCCTTCTGAAACACGAGAAGAGAGGGTGCTCAGGGATACTGAGAAATGCTGAGTACACGGCATCCTaGATGTGGATCCAGAAGCGC +
Preference number: 4 (lower is better)
Translates to: WFLLKHEKRGCSGILRNAEYTAS*MWIQKR
Trigger: GCGCTTCTGGATCCACATGCAGGATGCCGTGTACTC...AGCATTTCTCAGTATCCCTGAGCACCCTCTCTTCTCGTGTTTCAGAAGGAACCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS-3UTR GCA 90 bp TGCTCAGGGATACTGAGAAATGCTCAGAGGGATTTGGCAACGCAGAAGATGTGGATCTTCATGTACCGATaGACATCTGCAGGCAGGGAG +
Preference number: 4 (lower is better)
Translates to: CSGILRNAQRDLATQKMWIFMYR*TSAGRE
Trigger: CTCCCTGCCTGCAGATGTGCATCGGTACATGAAGAT...CCACATCTTCTGCGTTGCCAAATCCCTCTGAGCATTTCTCAGTATCCCTGAGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS-3UTR GCA 90 bp TTGATCCCAGAGTCCGTACAGAACGACTTTTGTGTATGTGAAATCCACATAAGGGGCAGCTCCAACACCTaGAGGGATCAGCACCAGCAG +
Preference number: 4 (lower is better)
Translates to: LIPESVQNDFCVCEIHIRGSSNT*RDQHQQ
Trigger: CTGCTGGTGCTGATCCCTGCAGGTGTTGGAGCTGCC...CCTTATGTGGATTTCACATACACAAAAGTCGTTCTGTACGGACTCTGGGATCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS-3UTR CCA 90 bp TTGATCCCAGAGTCCGTACAGAACGACTTTTGTGTATGTGAAATCCACATAAGGACGGCATCCTGCATGTaGATCCAGAAGCGCAGCCGC +
Preference number: 4 (lower is better)
Translates to: LIPESVQNDFCVCEIHIRTASCM*IQKRSR
Trigger: GCGGCTGCGCTTCTGGATCCACATGCAGGATGCCGT...CCTTATGTGGATTTCACATACACAAAAGTCGTTCTGTACGGACTCTGGGATCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS-3UTR GCA 90 bp TGGTTCCTTCTGAAACACGAGAAGAGAGGGTGCTCAGGGATACTGAGAAATGCTTCGGCTTCTATCTGTTaGTGTGTAGCAGACTCCCCA +
Preference number: 4 (lower is better)
Translates to: WFLLKHEKRGCSGILRNASASIC*CVADSP
Trigger: TGGGGAGTCTGCTACACAGCAACAGATAGAAGCCGA...AGCATTTCTCAGTATCCCTGAGCACCCTCTCTTCTCGTGTTTCAGAAGGAACCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS-3UTR GCA 90 bp TTCATGTGGGGTGTATGGTTAAGTGCTATGGTTCCTTCTGAAACACGAGAAGAGGTACCGATGCACATCTaGAGGCAGGGAGGAACCATC +
Preference number: 4 (lower is better)
Translates to: FMWGVWLSAMVPSETREEVPMHI*RQGGTI
Trigger: GATGGTTCCTCCCTGCCTGCAGATGTGCATCGGTAC...CTCTTCTCGTGTTTCAGAAGGAACCATAGCACTTAACCATACACCCCACATGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS-3UTR GCA 90 bp TTCATGTGGGGTGTATGGTTAAGTGCTATGGTTCCTTCTGAAACACGAGAAGAGGAAAACCCGAACTGCTaGAGGGAGTACACGGCATCC +
Preference number: 4 (lower is better)
Translates to: FMWGVWLSAMVPSETREEENPNC*REYTAS
Trigger: GGATGCCGTGTACTCCCTGCAGCAGTTCGGGTTTTC...CTCTTCTCGTGTTTCAGAAGGAACCATAGCACTTAACCATACACCCCACATGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS-3UTR CCA 90 bp TTCATGTGGGGTGTATGGTTAAGTGCTATGGTTCCTTCTGAAACACGAGAAGAGACCCGGTTGCTCAGCTaGTCAATGAACAGGATGGGG +
Preference number: 4 (lower is better)
Translates to: FMWGVWLSAMVPSETREETRLLS*SMNRMG
Trigger: CCCCATCCTGTTCATTGACCAGCTGAGCAACCGGGT...CTCTTCTCGTGTTTCAGAAGGAACCATAGCACTTAACCATACACCCCACATGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS-3UTR TCA 90 bp TGCTCAGGGATACTGAGAAATGCTCAGAGGGATTTGGCAACGCAGAAGATGTGGATCTGCATCTTTTTCTaGAAACCCGAACTGCTGCAG +
Preference number: 4 (lower is better)
Translates to: CSGILRNAQRDLATQKMWICIFF*KPELLQ
Trigger: CTGCAGCAGTTCGGGTTTTCAGAAAAAGATGCAGAT...CCACATCTTCTGCGTTGCCAAATCCCTCTGAGCATTTCTCAGTATCCCTGAGCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS-3UTR TCA 90 bp TGGTTAAGTGCTATGGTTCCTTCTGAAACACGAGAAGAGAGGGTGCTCAGGGATACTCCCCAAATTCATTaGCCCTGCTCTTATCCACAG +
Preference number: 4 (lower is better)
Translates to: WLSAMVPSETREERVLRDTPQIH*PCSYPQ
Trigger: CTGTGGATAAGAGCAGGGTCAATGAATTTGGGGAGT...ATCCCTGAGCACCCTCTCTTCTCGTGTTTCAGAAGGAACCATAGCACTTAACCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS-3UTR GCA 90 bp TTCATGTGGGGTGTATGGTTAAGTGCTATGGTTCCTTCTGAAACACGAGAAGAGTCTGAAAACCCGAACTaGTGCAGGGAGTACACGGCA +
Preference number: 4 (lower is better)
Translates to: FMWGVWLSAMVPSETREESENPN*CREYTA
Trigger: TGCCGTGTACTCCCTGCAGCAGTTCGGGTTTTCAGA...CTCTTCTCGTGTTTCAGAAGGAACCATAGCACTTAACCATACACCCCACATGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS-3UTR CCA 90 bp TTCATGTGGGGTGTATGGTTAAGTGCTATGGTTCCTTCTGAAACACGAGAAGAGTCTCTGCACCAAGGCTaGACCGTGTGGTGGTGTAAA +
Preference number: 4 (lower is better)
Translates to: FMWGVWLSAMVPSETREESLHQG*TVWWCK
Trigger: TTTACACCACCACACGGTCCAGCCTTGGTGCAGAGA...CTCTTCTCGTGTTTCAGAAGGAACCATAGCACTTAACCATACACCCCACATGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS-3UTR CCA 90 bp TTGATCCCAGAGTCCGTACAGAACGACTTTTGTGTATGTGAAATCCACATAAGGGATGGGGCTTCCGCTTaGGCTGCTCCTCATAAGACT +
Preference number: 4 (lower is better)
Translates to: LIPESVQNDFCVCEIHIRDGASA*AAPHKT
Trigger: AGTCTTATGAGGAGCAGCCCAAGCGGAAGCCCCATC...CCTTATGTGGATTTCACATACACAAAAGTCGTTCTGTACGGACTCTGGGATCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS-3UTR TCA 90 bp TGGTTCCTTCTGAAACACGAGAAGAGAGGGTGCTCAGGGATACTGAGAAATGCTACTGTCTTCCCAAGCTaGATCATCTTCATGTACCGA +
Preference number: 4 (lower is better)
Translates to: WFLLKHEKRGCSGILRNATVFPS*IIFMYR
Trigger: TCGGTACATGAAGATGATTCAGCTTGGGAAGACAGT...AGCATTTCTCAGTATCCCTGAGCACCCTCTCTTCTCGTGTTTCAGAAGGAACCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS-3UTR TCA 90 bp GGGAAAAAGAGCCATTTGATCCCAGAGTCCGTACAGAACGACTTTTGTGTATGTCTATGGGTACCAAACTaGAACACAGGTCTCAAGCCC +
Preference number: 4 (lower is better)
Translates to: GKKSHLIPESVQNDFCVCLWVPN*NTGLKP
Trigger: GGGCTTGAGACCTGTGTTTCAGTTTGGTACCCATAG...ACATACACAAAAGTCGTTCTGTACGGACTCTGGGATCAAATGGCTCTTTTTCCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS-3UTR CCA 90 bp TTCATGTGGGGTGTATGGTTAAGTGCTATGGTTCCTTCTGAAACACGAGAAGAGCTTTCCAAAGCTCAATaGCAGCTCCAACACCTGCAG +
Preference number: 4 (lower is better)
Translates to: FMWGVWLSAMVPSETREELSKAQ*QLQHLQ
Trigger: CTGCAGGTGTTGGAGCTGCCATTGAGCTTTGGAAAG...CTCTTCTCGTGTTTCAGAAGGAACCATAGCACTTAACCATACACCCCACATGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS-3UTR GCA 90 bp GGGAAAAAGAGCCATTTGATCCCAGAGTCCGTACAGAACGACTTTTGTGTATGTGCAACGCCAGAGCACTaGTTTGGTAGACATTCCAAT +
Preference number: 4 (lower is better)
Translates to: GKKSHLIPESVQNDFCVCATPEH*FGRHSN
Trigger: ATTGGAATGTCTACCAAAGCAGTGCTCTGGCGTTGC...ACATACACAAAAGTCGTTCTGTACGGACTCTGGGATCAAATGGCTCTTTTTCCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS-3UTR CCA 90 bp TGCTCAGGGATACTGAGAAATGCTCAGAGGGATTTGGCAACGCAGAAGATGTGGAAGACAAGTACTTCATaGCCTGAGCATCATACTTCT +
Preference number: 4 (lower is better)
Translates to: CSGILRNAQRDLATQKMWKTSTS*PEHHTS
Trigger: AGAAGTATGATGCTCAGGCCATGAAGTACTTGTCTT...CCACATCTTCTGCGTTGCCAAATCCCTCTGAGCATTTCTCAGTATCCCTGAGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS-3UTR TCA 90 bp TGGTTCCTTCTGAAACACGAGAAGAGAGGGTGCTCAGGGATACTGAGAAATGCTACTTCATCTTGTAATTaGCAAAAAGCTGGGGCAACA +
Preference number: 4 (lower is better)
Translates to: WFLLKHEKRGCSGILRNATSSCN*QKAGAT
Trigger: TGTTGCCCCAGCTTTTTGTCAATTACAAGATGAAGT...AGCATTTCTCAGTATCCCTGAGCACCCTCTCTTCTCGTGTTTCAGAAGGAACCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS-3UTR GCA 90 bp GGGAAAAAGAGCCATTTGATCCCAGAGTCCGTACAGAACGACTTTTGTGTATGTAAGAAGGTGAAAGGCTaGAACAAAGAAGGTCAATGC +
Preference number: 4 (lower is better)
Translates to: GKKSHLIPESVQNDFCVCKKVKG*NKEGQC
Trigger: GCATTGACCTTCTTTGTTGCAGCCTTTCACCTTCTT...ACATACACAAAAGTCGTTCTGTACGGACTCTGGGATCAAATGGCTCTTTTTCCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS-3UTR TCA 90 bp TTCATGTGGGGTGTATGGTTAAGTGCTATGGTTCCTTCTGAAACACGAGAAGAGGGTAGAATCCCAGCATaGTGTAGGAAAATATATGCA +
Preference number: 4 (lower is better)
Translates to: FMWGVWLSAMVPSETREEGRIPA*CRKIYA
Trigger: TGCATATATTTTCCTACATCATGCTGGGATTCTACC...CTCTTCTCGTGTTTCAGAAGGAACCATAGCACTTAACCATACACCCCACATGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS-3UTR CCA 90 bp TGGTTCCTTCTGAAACACGAGAAGAGAGGGTGCTCAGGGATACTGAGAAATGCTCTGTCCTTTCAAATTTaGAATCCACATCAAAGTCTT +
Preference number: 4 (lower is better)
Translates to: WFLLKHEKRGCSGILRNALSFQI*NPHQSL
Trigger: AAGACTTTGATGTGGATTCCAAATTTGAAAGGACAG...AGCATTTCTCAGTATCCCTGAGCACCCTCTCTTCTCGTGTTTCAGAAGGAACCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS-3UTR TCA 90 bp TTGATCCCAGAGTCCGTACAGAACGACTTTTGTGTATGTGAAATCCACATAAGGAAATCAAAAAGAAGGTaGAAGGCTGCAACAAAGAAG +
Preference number: 4 (lower is better)
Translates to: LIPESVQNDFCVCEIHIRKSKRR*KAATKK
Trigger: CTTCTTTGTTGCAGCCTTTCACCTTCTTTTTGATTT...CCTTATGTGGATTTCACATACACAAAAGTCGTTCTGTACGGACTCTGGGATCAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS CCA 90 bp CACCAAGGCTGGACCGTGTGGTGGTGTAAACACTCAGCTGCAGTTTaGGCCGCAGGGCCAGATAGGGCTGGATGCAGTTGGAGTCACCCG +
Preference number: 5 (lower is better)
Translates to: HQGWTVWWCKHSAAV*AAGPDRAGCSWSHP
Trigger: CGGGTGACTCCAACTGCATCCAGCCCTATCTGGCCCTGCGGCCCAAACTGCAGCTGAGTGTTTACACCACCACACGGTCCAGCCTTGGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS TCA 90 bp AGTTGGAGTCACCCGAGCACGGACGGGTATAGACGATACCGTACATaGCCCAGCAGGTATGCACCACGTACACCAGGAACACGCCCACCA +
Preference number: 5 (lower is better)
Translates to: SWSHPSTDGYRRYRT*PSRYAPRTPGTRPP
Trigger: TGGTGGGCGTGTTCCTGGTGTACGTGGTGCATACCTGCTGGGTCATGTACGGTATCGTCTATACCCGTCCGTGCTCGGGTGACTCCAACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS TCA 90 bp GTACACGGCATCCTGCATGTGGATCCAGAAGCGCAGCCGCCCCAATaGGATCTTGTCGTAGGACACAGTGAGTGGCAGCTCGGTGGTAGA +
Preference number: 5 (lower is better)
Translates to: VHGILHVDPEAQPPQ*DLVVGHSEWQLGGR
Trigger: TCTACCACCGAGCTGCCACTCACTGTGTCCTACGACAAGATCTCATTGGGGCGGCTGCGCTTCTGGATCCACATGCAGGATGCCGTGTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS-3UTR CAA 90 bp TGCTCCCTACCCTTGCGTGCTAAGGTGTCCACTGGCTGCCATGGGACACTCATGTCAGCACCAGCAGGCTaGTCTGTTCATCCAGCAGGA +
Preference number: 5 (lower is better)
Translates to: CSLPLRAKVSTGCHGTLMSAPAG*SVHPAG
Trigger: TCCTGCTGGATGAACAGACAAGCCTGCTGGTGCTGA...CATGAGTGTCCCATGGCAGCCAGTGGACACCTTAGCACGCAAGGGTAGGGAGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS CCA 90 bp AGATCAGGTCCACATTGTTCTCTGCACCAAGGCTGGACCGTGTGGTaGTGTAAACACTCAGCTGCAGTTTGGGCCGCAGGGCCAGATAGG +
Preference number: 5 (lower is better)
Translates to: RSGPHCSLHQGWTVW*CKHSAAVWAAGPDR
Trigger: CCTATCTGGCCCTGCGGCCCAAACTGCAGCTGAGTGTTTACACCACCACACGGTCCAGCCTTGGTGCAGAGAACAATGTGGACCTGATCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS TCA 90 bp GGTCAGCCTTGGTCGCCAGTGAGAGACGGGTTCATCCAGGGCGTTTaGTGGCTTCTTCTCGGCTTCTATCTGTTGCTGTGTAGCAGACTC +
Preference number: 5 (lower is better)
Translates to: GQPWSPVRDGFIQGV*WLLLGFYLLLCSRL
Trigger: GAGTCTGCTACACAGCAACAGATAGAAGCCGAGAAGAAGCCATCAAACGCCCTGGATGAACCCGTCTCTCACTGGCGACCAAGGCTGACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS-3UTR CAA 90 bp AGGTGTCCACTGGCTGCCATGGGACACTCATGCACTGAGAGCTACCCTTGGGTGAAGATCAGGTCCACATaGTTCTCTGCACCAAGGCTG +
Preference number: 5 (lower is better)
Translates to: RCPLAAMGHSCTESYPWVKIRST*FSAPRL
Trigger: CAGCCTTGGTGCAGAGAACAATGTGGACCTGATCTT...CACCCAAGGGTAGCTCTCAGTGCATGAGTGTCCCATGGCAGCCAGTGGACACCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS TCA 90 bp GGGGCTTCCGCTTGGGCTGCTCCTCATAAGACTCCCCAAATTCATTaGCCCTGCTCTTATCCACAGGGTAAAGCCACCGCTGGTAAAGGT +
Preference number: 5 (lower is better)
Translates to: GASAWAAPHKTPQIH*PCSYPQGKATAGKG
Trigger: ACCTTTACCAGCGGTGGCTTTACCCTGTGGATAAGAGCAGGGTCAATGAATTTGGGGAGTCTTATGAGGAGCAGCCCAAGCGGAAGCCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS-3UTR CAA 90 bp AGGTGTCCACTGGCTGCCATGGGACACTCATGCACTGAGAGCTACCCTTGGGTGCCATTCACAAAGCTGTaGATGAGCCAGGAGTACCAA +
Preference number: 5 (lower is better)
Translates to: RCPLAAMGHSCTESYPWVPFTKL*MSQEYQ
Trigger: TTGGTACTCCTGGCTCATCAACAGCTTTGTGAATGG...CACCCAAGGGTAGCTCTCAGTGCATGAGTGTCCCATGGCAGCCAGTGGACACCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS-3UTR CAA 90 bp CACGAGAAGAGAGGGTGCTCAGGGATACTGAGAAATGCTCAGAGGGATTTGGCAGTTCATCCAGGGCGTTaGATGGCTTCTTCTCGGCTT +
Preference number: 5 (lower is better)
Translates to: HEKRGCSGILRNAQRDLAVHPGR*MASSRL
Trigger: AAGCCGAGAAGAAGCCATCAAACGCCCTGGATGAAC...TGCCAAATCCCTCTGAGCATTTCTCAGTATCCCTGAGCACCCTCTCTTCTCGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS TCA 90 bp GGTTTATCACCATCAGGTCTTTCACCCGGTTGCTCAGCTGGTCAATaGACAGGATGGGGAGGTAGTGCACTGTCTTCCCAAGCTGAATCA +
Preference number: 5 (lower is better)
Translates to: GLSPSGLSPGCSAGQ*TGWGGSALSSQAES
Trigger: TGATTCAGCTTGGGAAGACAGTGCACTACCTCCCCATCCTGTTCATTGACCAGCTGAGCAACCGGGTGAAAGACCTGATGGTGATAAACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS GCA 90 bp CACATCAAAGTCTTCCACGTTCAAGATCAGGTCCACATTGTTCTCTaGACCAAGGCTGGACCGTGTGGTGGTGTAAACACTCAGCTGCAG +
Preference number: 5 (lower is better)
Translates to: HIKVFHVQDQVHIVL*TKAGPCGGVNTQLQ
Trigger: CTGCAGCTGAGTGTTTACACCACCACACGGTCCAGCCTTGGTGCAGAGAACAATGTGGACCTGATCTTGAACGTGGAAGACTTTGATGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS-3UTR CAA 90 bp GTGCTAAGGTGTCCACTGGCTGCCATGGGACACTCATGCACTGAGAGCTACCCTGCTAAGAGATATAAGTaGGTGTCTACGAAAATTCCC +
Preference number: 5 (lower is better)
Translates to: VLRCPLAAMGHSCTESYPAKRYK*VSTKIP
Trigger: GGGAATTTTCGTAGACACCAACTTATATCTCTTAGC...AGGGTAGCTCTCAGTGCATGAGTGTCCCATGGCAGCCAGTGGACACCTTAGCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS GCA 90 bp CACTGTCTTCCCAAGCTGAATCATCTTCATGTACCGATGCACATCTaGAGGCAGGGAGGAACCATCAAAGACAAAGTCATCCACCATCAC +
Preference number: 5 (lower is better)
Translates to: HCLPKLNHLHVPMHI*RQGGTIKDKVIHHH
Trigger: GTGATGGTGGATGACTTTGTCTTTGATGGTTCCTCCCTGCCTGCAGATGTGCATCGGTACATGAAGATGATTCAGCTTGGGAAGACAGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS GCA 90 bp CTGAAACACAGGTCTCAAGCCCCTCCAGGCTACTGTAATTTTCAATaGCTTCTTCACTTTCCAAAGCTCAATGGCAGCTCCAACACCTGC +
Preference number: 5 (lower is better)
Translates to: LKHRSQAPPGYCNFQ*LLHFPKLNGSSNTC
Trigger: GCAGGTGTTGGAGCTGCCATTGAGCTTTGGAAAGTGAAGAAGGCATTGAAAATTACAGTAGCCTGGAGGGGCTTGAGACCTGTGTTTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS-3UTR CAA 90 bp TGCTCAGGGATACTGAGAAATGCTCAGAGGGATTTGGCAACGCAGAAGATGTGGGACTCCCCAAATTCATaGACCCTGCTCTTATCCACA +
Preference number: 5 (lower is better)
Translates to: CSGILRNAQRDLATQKMWDSPNS*TLLLST
Trigger: TGTGGATAAGAGCAGGGTCAATGAATTTGGGGAGTC...CCACATCTTCTGCGTTGCCAAATCCCTCTGAGCATTTCTCAGTATCCCTGAGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS TCA 90 bp ACCACATGTACCTGTTTCCCATCTTGCCAGGGTAGAATCCCAGCATaGTGTAGGAAAATATATGCATACAGCGTCCCATTGTTTCTTGTT +
Preference number: 5 (lower is better)
Translates to: TTCTCFPSCQGRIPA*CRKIYAYSVPLFLV
Trigger: AACAAGAAACAATGGGACGCTGTATGCATATATTTTCCTACATCATGCTGGGATTCTACCCTGGCAAGATGGGAAACAGGTACATGTGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS TCA 90 bp TCATACTTCTCAGTCTTCCTCTCAGATTCACTATGGGTACCAAACTaGAACACAGGTCTCAAGCCCCTCCAGGCTACTGTAATTTTCAAT +
Preference number: 5 (lower is better)
Translates to: SYFSVFLSDSLWVPN*NTGLKPLQATVIFN
Trigger: ATTGAAAATTACAGTAGCCTGGAGGGGCTTGAGACCTGTGTTTCAGTTTGGTACCCATAGTGAATCTGAGAGGAAGACTGAGAAGTATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS-3UTR CAA 90 bp GGGAAAAAGAGCCATTTGATCCCAGAGTCCGTACAGAACGACTTTTGTGTATGTGCATACAGCGTCCCATaGTTTCTTGTTTTCTTTGGT +
Preference number: 5 (lower is better)
Translates to: GKKSHLIPESVQNDFCVCAYSVP*FLVFFG
Trigger: ACCAAAGAAAACAAGAAACAATGGGACGCTGTATGC...ACATACACAAAAGTCGTTCTGTACGGACTCTGGGATCAAATGGCTCTTTTTCCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS CCA 90 bp GGTGAAAGGCTGCAACAAAGAAGGTCAATGCTAAGAGATATAAGTTaGTGTCTACGAAAATTCCCTTCAATTCATCTGCATCTTTTTCTG +
Preference number: 5 (lower is better)
Translates to: GERLQQRRSMLRDIS*CLRKFPSIHLHLFL
Trigger: CAGAAAAAGATGCAGATGAATTGAAGGGAATTTTCGTAGACACCAACTTATATCTCTTAGCATTGACCTTCTTTGTTGCAGCCTTTCACC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS CCA 72 bp GTTTGGGCCGCAGGGCCAGATAGGGCTGGATGCAGTTaGAGTCACCCGAGCACGGACGGGTATAGACGATAC +
Preference number: 6 (lower is better)
Translates to: VWAAGPDRAGCS*SHPSTDGYRRY
Trigger: GTATCGTCTATACCCGTCCGTGCTCGGGTGACTCCAACTGCATCCAGCCCTATCTGGCCCTGCGGCCCAAAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS GCA 72 bp GAAAACCCGAACTGCTGCAGGGAGTACACGGCATCCTaGATGTGGATCCAGAAGCGCAGCCGCCCCAATGAG +
Preference number: 6 (lower is better)
Translates to: ENPNCCREYTAS*MWIQKRSRPNE
Trigger: CTCATTGGGGCGGCTGCGCTTCTGGATCCACATGCAGGATGCCGTGTACTCCCTGCAGCAGTTCGGGTTTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS CCA 72 bp TGGACCGTGTGGTGGTGTAAACACTCAGCTGCAGTTTaGGCCGCAGGGCCAGATAGGGCTGGATGCAGTTGG +
Preference number: 6 (lower is better)
Translates to: WTVWWCKHSAAV*AAGPDRAGCSW
Trigger: CCAACTGCATCCAGCCCTATCTGGCCCTGCGGCCCAAACTGCAGCTGAGTGTTTACACCACCACACGGTCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS CCA 72 bp CCGAACTGCTGCAGGGAGTACACGGCATCCTGCATGTaGATCCAGAAGCGCAGCCGCCCCAATGAGATCTTG +
Preference number: 6 (lower is better)
Translates to: PNCCREYTASCM*IQKRSRPNEIL
Trigger: CAAGATCTCATTGGGGCGGCTGCGCTTCTGGATCCACATGCAGGATGCCGTGTACTCCCTGCAGCAGTTCGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS CCA 72 bp CCACATTGTTCTCTGCACCAAGGCTGGACCGTGTGGTaGTGTAAACACTCAGCTGCAGTTTGGGCCGCAGGG +
Preference number: 6 (lower is better)
Translates to: PHCSLHQGWTVW*CKHSAAVWAAG
Trigger: CCCTGCGGCCCAAACTGCAGCTGAGTGTTTACACCACCACACGGTCCAGCCTTGGTGCAGAGAACAATGTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS TCA 72 bp CACCCGAGCACGGACGGGTATAGACGATACCGTACATaGCCCAGCAGGTATGCACCACGTACACCAGGAACA +
Preference number: 6 (lower is better)
Translates to: HPSTDGYRRYRT*PSRYAPRTPGT
Trigger: TGTTCCTGGTGTACGTGGTGCATACCTGCTGGGTCATGTACGGTATCGTCTATACCCGTCCGTGCTCGGGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS TCA 72 bp ATCCTGCATGTGGATCCAGAAGCGCAGCCGCCCCAATaGGATCTTGTCGTAGGACACAGTGAGTGGCAGCTC +
Preference number: 6 (lower is better)
Translates to: ILHVDPEAQPPQ*DLVVGHSEWQL
Trigger: GAGCTGCCACTCACTGTGTCCTACGACAAGATCTCATTGGGGCGGCTGCGCTTCTGGATCCACATGCAGGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS TCA 72 bp TGGTCGCCAGTGAGAGACGGGTTCATCCAGGGCGTTTaGTGGCTTCTTCTCGGCTTCTATCTGTTGCTGTGT +
Preference number: 6 (lower is better)
Translates to: WSPVRDGFIQGV*WLLLGFYLLLC
Trigger: ACACAGCAACAGATAGAAGCCGAGAAGAAGCCATCAAACGCCCTGGATGAACCCGTCTCTCACTGGCGACCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS TCA 72 bp CCATCAGGTCTTTCACCCGGTTGCTCAGCTGGTCAATaGACAGGATGGGGAGGTAGTGCACTGTCTTCCCAA +
Preference number: 6 (lower is better)
Translates to: PSGLSPGCSAGQ*TGWGGSALSSQ
Trigger: TTGGGAAGACAGTGCACTACCTCCCCATCCTGTTCATTGACCAGCTGAGCAACCGGGTGAAAGACCTGATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS CAA 72 bp TTGGTCGCCAGTGAGAGACGGGTTCATCCAGGGCGTTaGATGGCTTCTTCTCGGCTTCTATCTGTTGCTGTG +
Preference number: 6 (lower is better)
Translates to: LVASERRVHPGR*MASSRLLSVAV
Trigger: CACAGCAACAGATAGAAGCCGAGAAGAAGCCATCAAACGCCCTGGATGAACCCGTCTCTCACTGGCGACCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS GCA 72 bp GTCTTCCACGTTCAAGATCAGGTCCACATTGTTCTCTaGACCAAGGCTGGACCGTGTGGTGGTGTAAACACT +
Preference number: 6 (lower is better)
Translates to: VFHVQDQVHIVL*TKAGPCGGVNT
Trigger: AGTGTTTACACCACCACACGGTCCAGCCTTGGTGCAGAGAACAATGTGGACCTGATCTTGAACGTGGAAGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS CAA 72 bp ACATCAAAGTCTTCCACGTTCAAGATCAGGTCCACATaGTTCTCTGCACCAAGGCTGGACCGTGTGGTGGTG +
Preference number: 6 (lower is better)
Translates to: TSKSSTFKIRST*FSAPRLDRVVV
Trigger: CACCACCACACGGTCCAGCCTTGGTGCAGAGAACAATGTGGACCTGATCTTGAACGTGGAAGACTTTGATGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS TCA 72 bp TCAGTCTTCCTCTCAGATTCACTATGGGTACCAAACTaGAACACAGGTCTCAAGCCCCTCCAGGCTACTGTA +
Preference number: 6 (lower is better)
Translates to: SVFLSDSLWVPN*NTGLKPLQATV
Trigger: TACAGTAGCCTGGAGGGGCTTGAGACCTGTGTTTCAGTTTGGTACCCATAGTGAATCTGAGAGGAAGACTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS GCA 72 bp AATTCATCTGCATCTTTTTCTGAAAACCCGAACTGCTaGAGGGAGTACACGGCATCCTGCATGTGGATCCAG +
Preference number: 6 (lower is better)
Translates to: NSSASFSENPNC*REYTASCMWIQ
Trigger: CTGGATCCACATGCAGGATGCCGTGTACTCCCTGCAGCAGTTCGGGTTTTCAGAAAAAGATGCAGATGAATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS TCA 72 bp CTTGTAGGTAAAGGCCTTCCAAGGCAGGTGTGCCACTaGCTTCATCTTGTAATTGACAAAAAGCTGGGGCAA +
Preference number: 6 (lower is better)
Translates to: LVGKGLPRQVCH*LHLVIDKKLGQ
Trigger: TTGCCCCAGCTTTTTGTCAATTACAAGATGAAGTCAGTGGCACACCTGCCTTGGAAGGCCTTTACCTACAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS CAA 72 bp GCTGCAACAAAGAAGGTCAATGCTAAGAGATATAAGTaGGTGTCTACGAAAATTCCCTTCAATTCATCTGCA +
Preference number: 6 (lower is better)
Translates to: AATKKVNAKRYK*VSTKIPFNSSA
Trigger: TGCAGATGAATTGAAGGGAATTTTCGTAGACACCAACTTATATCTCTTAGCATTGACCTTCTTTGTTGCAGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9
CDS CCA 72 bp CTGCAACAAAGAAGGTCAATGCTAAGAGATATAAGTTaGTGTCTACGAAAATTCCCTTCAATTCATCTGCAT +
Preference number: 6 (lower is better)
Translates to: LQQRRSMLRDIS*CLRKFPSIHLH
Trigger: ATGCAGATGAATTGAAGGGAATTTTCGTAGACACCAACTTATATCTCTTAGCATTGACCTTCTTTGTTGCAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022102.9