Pregenerated sensors for CLPSL2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024224Ensembl transcript IDs: ENSMUST00000025061.6
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | TGCCCAGGAGTCGATGTGGAGTTGGCGATGGGGGTGACACCTGTGGAGGGGAAGTGCGGGACTTGGGGGTaGAGAAGGCTCCGCTTCTCT | + |
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Preference number: 4 (lower is better) Translates to: CPGVDVELAMGVTPVEGKCGTWG*RRLRFS Trigger: AGAGAAGCGGAGCCTTCTGCACCCCCAAGTCCCGCA...CTTCCCCTCCACAGGTGTCACCCCCATCGCCAACTCCACATCGACTCCTGGGCA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000025061.6 |
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| CDS-3UTR CCA 90 bp | TGCCCAGGAGTCGATGTGGAGTTGGCGATGGGGGTGACACCTGTGGAGGGGAAGTGTTCAGGCTCCCCTTaGTCTGTGGCAAGCACCCCA | + |
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Preference number: 4 (lower is better) Translates to: CPGVDVELAMGVTPVEGKCSGSP*SVASTP Trigger: TGGGGTGCTTGCCACAGACCAAGGGGAGCCTGAACA...CTTCCCCTCCACAGGTGTCACCCCCATCGCCAACTCCACATCGACTCCTGGGCA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000025061.6 |
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| CDS-3UTR CCA 90 bp | TGCCCAGGAGTCGATGTGGAGTTGGCGATGGGGGTGACACCTGTGGAGGGGAAGTTCACTGTGTCTGTGTaGCAGGGTCCCAGCAAGCAA | + |
|
Preference number: 4 (lower is better) Translates to: CPGVDVELAMGVTPVEGKFTVSV*QGPSKQ Trigger: TTGCTTGCTGGGACCCTGCCACACAGACACAGTGAA...CTTCCCCTCCACAGGTGTCACCCCCATCGCCAACTCCACATCGACTCCTGGGCA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025061.6 |
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| CDS-3UTR TCA 90 bp | TGCCCAGGAGTCGATGTGGAGTTGGCGATGGGGGTGACACCTGTGGAGGGGAAGGGCCTTTTTGGGAGGTaGGTTTTCACTGTGTCTGTG | + |
|
Preference number: 4 (lower is better) Translates to: CPGVDVELAMGVTPVEGKGLFGR*VFTVSV Trigger: CACAGACACAGTGAAAACTCACCTCCCAAAAAGGCC...CTTCCCCTCCACAGGTGTCACCCCCATCGCCAACTCCACATCGACTCCTGGGCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000025061.6 |
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| CDS-3UTR TCA 90 bp | TGCCCAGGAGTCGATGTGGAGTTGGCGATGGGGGTGACACCTGTGGAGGGGAAGGTGGGGTCCTTAGAATaGCAATTCAAGCCAGATCGA | + |
|
Preference number: 4 (lower is better) Translates to: CPGVDVELAMGVTPVEGKVGSLE*QFKPDR Trigger: TCGATCTGGCTTGAATTGTCATTCTAAGGACCCCAC...CTTCCCCTCCACAGGTGTCACCCCCATCGCCAACTCCACATCGACTCCTGGGCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000025061.6 |
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| CDS-3UTR CCA 90 bp | TGCCCAGGAGTCGATGTGGAGTTGGCGATGGGGGTGACACCTGTGGAGGGGAAGCTCCGTTGGCCTTTTTaGGAGGTGAGTTTTCACTGT | + |
|
Preference number: 4 (lower is better) Translates to: CPGVDVELAMGVTPVEGKLRWPF*EVSFHC Trigger: ACAGTGAAAACTCACCTCCCAAAAAGGCCAACGGAG...CTTCCCCTCCACAGGTGTCACCCCCATCGCCAACTCCACATCGACTCCTGGGCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000025061.6 |
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| CDS-3UTR CAA 90 bp | TGCCCAGGAGTCGATGTGGAGTTGGCGATGGGGGTGACACCTGTGGAGGGGAAGACACACTTGTCTCCGTaGGCCTTTTTGGGAGGTGAG | + |
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Preference number: 5 (lower is better) Translates to: CPGVDVELAMGVTPVEGKTHLSP*AFLGGE Trigger: CTCACCTCCCAAAAAGGCCAACGGAGACAAGTGTGT...CTTCCCCTCCACAGGTGTCACCCCCATCGCCAACTCCACATCGACTCCTGGGCA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000025061.6 |
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| CDS TCA 90 bp | TGCGGGACTTGGGGGTGCAGAAGGCTCCGCTTCTCTCCAGGTCTATaGGGCAACAGTCACTGGAGCACTGAGTGTGGTGGACACACTTGT | + |
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Preference number: 5 (lower is better) Translates to: CGTWGCRRLRFSPGL*GNSHWSTECGGHTC Trigger: ACAAGTGTGTCCACCACACTCAGTGCTCCAGTGACTGTTGCCTCATAGACCTGGAGAGAAGCGGAGCCTTCTGCACCCCCAAGTCCCGCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025061.6 |
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| CDS CCA 90 bp | TGGAGCACTGAGTGTGGTGGACACACTTGTCTCCGTTGGCCTTTTTaGGAGGTGAGTTTTCACTGTGTCTGTGTGGCAGGGTCCCAGCAA | + |
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Preference number: 5 (lower is better) Translates to: WSTECGGHTCLRWPF*EVSFHCVCVAGSQQ Trigger: TTGCTGGGACCCTGCCACACAGACACAGTGAAAACTCACCTCCCAAAAAGGCCAACGGAGACAAGTGTGTCCACCACACTCAGTGCTCCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025061.6 |
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| CDS CCA 90 bp | AACAGTCACTGGAGCACTGAGTGTGGTGGACACACTTGTCTCCGTTaGCCTTTTTGGGAGGTGAGTTTTCACTGTGTCTGTGTGGCAGGG | + |
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Preference number: 5 (lower is better) Translates to: NSHWSTECGGHTCLR*PFWEVSFHCVCVAG Trigger: CCCTGCCACACAGACACAGTGAAAACTCACCTCCCAAAAAGGCCAACGGAGACAAGTGTGTCCACCACACTCAGTGCTCCAGTGACTGTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025061.6 |
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| CDS CAA 72 bp | TTGGTCTGTGGCAAGCACCCCATGCCTATGCGGGACTaGGGGGTGCAGAAGGCTCCGCTTCTCTCCAGGTCT | + |
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Preference number: 6 (lower is better) Translates to: LVCGKHPMPMRD*GVQKAPLLSRS Trigger: AGACCTGGAGAGAAGCGGAGCCTTCTGCACCCCCAAGTCCCGCATAGGCATGGGGTGCTTGCCACAGACCAA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025061.6 |
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| CDS CAA 72 bp | CCAGATCGACAGGGACACATGATGTTCAGGCTCCCCTaGGTCTGTGGCAAGCACCCCATGCCTATGCGGGAC | + |
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Preference number: 6 (lower is better) Translates to: PDRQGHMMFRLP*VCGKHPMPMRD Trigger: GTCCCGCATAGGCATGGGGTGCTTGCCACAGACCAAGGGGAGCCTGAACATCATGTGTCCCTGTCGATCTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025061.6 |
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| CDS TCA 72 bp | TGGGGGTGCAGAAGGCTCCGCTTCTCTCCAGGTCTATaGGGCAACAGTCACTGGAGCACTGAGTGTGGTGGA | + |
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Preference number: 6 (lower is better) Translates to: WGCRRLRFSPGL*GNSHWSTECGG Trigger: TCCACCACACTCAGTGCTCCAGTGACTGTTGCCTCATAGACCTGGAGAGAAGCGGAGCCTTCTGCACCCCCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025061.6 |
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| CDS TCA 72 bp | GTGGACACACTTGTCTCCGTTGGCCTTTTTGGGAGGTaGGTTTTCACTGTGTCTGTGTGGCAGGGTCCCAGC | + |
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Preference number: 6 (lower is better) Translates to: VDTLVSVGLFGR*VFTVSVWQGPS Trigger: GCTGGGACCCTGCCACACAGACACAGTGAAAACTCACCTCCCAAAAAGGCCAACGGAGACAAGTGTGTCCAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025061.6 |
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| CDS TCA 72 bp | CTCTCCAGGTCTATGAGGCAACAGTCACTGGAGCACTaGGTGTGGTGGACACACTTGTCTCCGTTGGCCTTT | + |
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Preference number: 6 (lower is better) Translates to: LSRSMRQQSLEH*VWWTHLSPLAF Trigger: AAAGGCCAACGGAGACAAGTGTGTCCACCACACTCAGTGCTCCAGTGACTGTTGCCTCATAGACCTGGAGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025061.6 |
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| CDS CCA 72 bp | TGGAGCACTGAGTGTGGTGGACACACTTGTCTCCGTTaGCCTTTTTGGGAGGTGAGTTTTCACTGTGTCTGT | + |
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Preference number: 6 (lower is better) Translates to: WSTECGGHTCLR*PFWEVSFHCVC Trigger: ACAGACACAGTGAAAACTCACCTCCCAAAAAGGCCAACGGAGACAAGTGTGTCCACCACACTCAGTGCTCCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025061.6 |
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