RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CLPS (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024225

Ensembl transcript IDs: ENSMUST00000025062.5, ENSMUST00000114785.3

Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AGCAAGGACAGGCAGAGACGGACAAGGTTGCAAGTGGGTTTTAATTaGCAACAGCTGGCTGGCTCAGATGGGACAGAGGGAGAAAGAGAA +
Preference number: 1 (lower is better)
Translates to: SKDRQRRTRLQVGFN*QQLAGSDGTEGERE
Trigger: TTCTCTTTCTCCCTCTGTCCCATCTGAGCCAGCCAGCTGTTGGCAATTAAAACCCACTTGCAACCTTGTCCGTCTCTGCCTGTCCTTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025062.5
3UTR CCA 90 bp TTTACTTGCAGAGCAAGGACAGGCAGAGACGGACAAGGTTGCAAGTaGGTTTTAATTGCCAACAGCTGGCTGGCTCAGATGGGACAGAGG +
Preference number: 1 (lower is better)
Translates to: FTCRARTGRDGQGCK*VLIANSWLAQMGQR
Trigger: CCTCTGTCCCATCTGAGCCAGCCAGCTGTTGGCAATTAAAACCCACTTGCAACCTTGTCCGTCTCTGCCTGTCCTTGCTCTGCAAGTAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025062.5
3UTR GCA 90 bp GAGACTTTTACTTGCAGAGCAAGGACAGGCAGAGACGGACAAGGTTaGAAGTGGGTTTTAATTGCCAACAGCTGGCTGGCTCAGATGGGA +
Preference number: 1 (lower is better)
Translates to: ETFTCRARTGRDGQG*KWVLIANSWLAQMG
Trigger: TCCCATCTGAGCCAGCCAGCTGTTGGCAATTAAAACCCACTTGCAACCTTGTCCGTCTCTGCCTGTCCTTGCTCTGCAAGTAAAAGTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025062.5
3UTR-3UTR CCA 90 bp TACTTGCAGAGCAAGGACAGGCAGAGACGGACAAGGTTGCAAGTGGGTTTTAATGCTGGCTGGCTCAGATaGGACAGAGGGAGAAAGAGA +
Preference number: 2 (lower is better)
Translates to: YLQSKDRQRRTRLQVGFNAGWLR*DRGRKR
Trigger: TCTCTTTCTCCCTCTGTCCCATCTGAGCCAGCCAGC...ATTAAAACCCACTTGCAACCTTGTCCGTCTCTGCCTGTCCTTGCTCTGCAAGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025062.5
3UTR GCA 72 bp ACTTGCAGAGCAAGGACAGGCAGAGACGGACAAGGTTaGAAGTGGGTTTTAATTGCCAACAGCTGGCTGGCT +
Preference number: 3 (lower is better)
Translates to: TCRARTGRDGQG*KWVLIANSWLA
Trigger: AGCCAGCCAGCTGTTGGCAATTAAAACCCACTTGCAACCTTGTCCGTCTCTGCCTGTCCTTGCTCTGCAAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025062.5
3UTR CCA 72 bp AGAGCAAGGACAGGCAGAGACGGACAAGGTTGCAAGTaGGTTTTAATTGCCAACAGCTGGCTGGCTCAGATG +
Preference number: 3 (lower is better)
Translates to: RARTGRDGQGCK*VLIANSWLAQM
Trigger: CATCTGAGCCAGCCAGCTGTTGGCAATTAAAACCCACTTGCAACCTTGTCCGTCTCTGCCTGTCCTTGCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025062.5
3UTR CCA 72 bp GGACAAGGTTGCAAGTGGGTTTTAATTGCCAACAGCTaGCTGGCTCAGATGGGACAGAGGGAGAAAGAGAAG +
Preference number: 3 (lower is better)
Translates to: GQGCKWVLIANS*LAQMGQREKEK
Trigger: CTTCTCTTTCTCCCTCTGTCCCATCTGAGCCAGCCAGCTGTTGGCAATTAAAACCCACTTGCAACCTTGTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025062.5
CDS-3UTR CCA 90 bp AATTGCCAACAGCTGGCTGGCTCAGATGGGACAGAGGGAGAAAGAGAAGAAGGTACTGCTTGGAGCGCCTaGAGTCGAGGCAGATGCCAT +
Preference number: 4 (lower is better)
Translates to: NCQQLAGSDGTEGEREEGTAWSA*SRGRCH
Trigger: ATGGCATCTGCCTCGACTCCAGGCGCTCCAAGCAGT...ACCTTCTTCTCTTTCTCCCTCTGTCCCATCTGAGCCAGCCAGCTGTTGGCAATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025062.5
ENSMUST00000114785.3
CDS-3UTR CCA 90 bp AATTGCCAACAGCTGGCTGGCTCAGATGGGACAGAGGGAGAAAGAGAAGAAGGTGGGCAATGCCCAGGATaGTGTCATGTTGGCAGCATC +
Preference number: 4 (lower is better)
Translates to: NCQQLAGSDGTEGEREEGGQCPG*CHVGSI
Trigger: GATGCTGCCAACATGACACCATCCTGGGCATTGCCC...ACCTTCTTCTCTTTCTCCCTCTGTCCCATCTGAGCCAGCCAGCTGTTGGCAATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025062.5
3UTR CAA 72 bp TACTTGCAGAGCAAGGACAGGCAGAGACGGACAAGGTaGCAAGTGGGTTTTAATTGCCAACAGCTGGCTGGC +
Preference number: 4 (lower is better)
Translates to: YLQSKDRQRRTR*QVGFNCQQLAG
Trigger: GCCAGCCAGCTGTTGGCAATTAAAACCCACTTGCAACCTTGTCCGTCTCTGCCTGTCCTTGCTCTGCAAGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025062.5
CDS-3UTR GCA 90 bp GTTTTAATTGCCAACAGCTGGCTGGCTCAGATGGGACAGAGGGAGAAAGAGAAGAGCTGCATAGGCCACTaGAAGGAGGGACACAAGCAG +
Preference number: 4 (lower is better)
Translates to: VLIANSWLAQMGQREKEKSCIGH*KEGHKQ
Trigger: CTGCTTGTGTCCCTCCTTGCAGTGGCCTATGCAGCT...CTTCTCTTTCTCCCTCTGTCCCATCTGAGCCAGCCAGCTGTTGGCAATTAAAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025062.5
ENSMUST00000114785.3
CDS-3UTR GCA 90 bp GGTAGACAAAGGTTTATGAGACTTTTACTTGCAGAGCAAGGACAGGCAGAGACGCCATGGCCTTGTGTGTaGAACGGGCAATGCCCAGGA +
Preference number: 4 (lower is better)
Translates to: GRQRFMRLLLAEQGQAETPWPCV*NGQCPG
Trigger: TCCTGGGCATTGCCCGTTGCACACACAAGGCCATGG...CGTCTCTGCCTGTCCTTGCTCTGCAAGTAAAAGTCTCATAAACCTTTGTCTACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025062.5
CDS-3UTR GCA 90 bp CCTGGTAGACAAAGGTTTATGAGACTTTTACTTGCAGAGCAAGGACAGGCAGAGAGCTGCATAGGCCACTaGAAGGAGGGACACAAGCAG +
Preference number: 4 (lower is better)
Translates to: PGRQRFMRLLLAEQGQAESCIGH*KEGHKQ
Trigger: CTGCTTGTGTCCCTCCTTGCAGTGGCCTATGCAGCT...CTCTGCCTGTCCTTGCTCTGCAAGTAAAAGTCTCATAAACCTTTGTCTACCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025062.5
CDS-3UTR GCA 90 bp ATTGCCAACAGCTGGCTGGCTCAGATGGGACAGAGGGAGAAAGAGAAGAAGGTACATGTTGGCAGCATCTaGTCTTACACTGCATACTGT +
Preference number: 4 (lower is better)
Translates to: IANSWLAQMGQREKEKKVHVGSI*SYTAYC
Trigger: ACAGTATGCAGTGTAAGAGCAGATGCTGCCAACATG...TACCTTCTTCTCTTTCTCCCTCTGTCCCATCTGAGCCAGCCAGCTGTTGGCAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025062.5
CDS GCA 90 bp CTCACCGTCCTCCAGGTTGATAATAAGACCCCGGGGTCCGGGAGCTaGATAGGCCACTGCAAGGAGGGACACAAGCAGAAGAACAAGGAC +
Preference number: 5 (lower is better)
Translates to: LTVLQVDNKTPGSGS*IGHCKEGHKQKNKD
Trigger: GTCCTTGTTCTTCTGCTTGTGTCCCTCCTTGCAGTGGCCTATGCAGCTCCCGGACCCCGGGGTCTTATTATCAACCTGGAGGACGGTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025062.5
CDS GCA 90 bp AGAGGGTCTTTGGGGAGCACTCGCTGTTCTCCATGGCCTTGTGTGTaGAACGGGCAATGCCCAGGATGGTGTCATGTTGGCAGCATCTGC +
Preference number: 5 (lower is better)
Translates to: RGSLGSTRCSPWPCV*NGQCPGWCHVGSIC
Trigger: GCAGATGCTGCCAACATGACACCATCCTGGGCATTGCCCGTTGCACACACAAGGCCATGGAGAACAGCGAGTGCTCCCCAAAGACCCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025062.5
CDS GCA 90 bp CCCATAGAGGGTCAGGTTGATAATAAGACCCCGGGGTCCGGGAGCTaGATAGGCCACTGCAAGGAGGGACACAAGCAGAAGAACAAGGAC +
Preference number: 5 (lower is better)
Translates to: PIEGQVDNKTPGSGS*IGHCKEGHKQKNKD
Trigger: GTCCTTGTTCTTCTGCTTGTGTCCCTCCTTGCAGTGGCCTATGCAGCTCCCGGACCCCGGGGTCTTATTATCAACCTGACCCTCTATGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114785.3
CDS CCA 90 bp AGTAGATCCCATAGAGGGTCTTTGGGGAGCACTCGCTGTTCTCCATaGCCTTGTGTGTGCAACGGGCAATGCCCAGGATGGTGTCATGTT +
Preference number: 5 (lower is better)
Translates to: SRSHRGSLGSTRCSP*PCVCNGQCPGWCHV
Trigger: AACATGACACCATCCTGGGCATTGCCCGTTGCACACACAAGGCCATGGAGAACAGCGAGTGCTCCCCAAAGACCCTCTATGGGATCTACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025062.5
CDS-3UTR CAA 90 bp GACTTTTACTTGCAGAGCAAGGACAGGCAGAGACGGACAAGGTTGCAAGTGGGTTCCCATAGAGGGTCTTaGGGGAGCACTCGCTGTTCT +
Preference number: 5 (lower is better)
Translates to: DFYLQSKDRQRRTRLQVGSHRGS*GSTRCS
Trigger: AGAACAGCGAGTGCTCCCCAAAGACCCTCTATGGGA...ACCCACTTGCAACCTTGTCCGTCTCTGCCTGTCCTTGCTCTGCAAGTAAAAGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025062.5
CDS-3UTR CAA 90 bp GGTTTTAATTGCCAACAGCTGGCTGGCTCAGATGGGACAGAGGGAGAAAGAGAATCACCGTCCTCCAGGTaGATAATAAGACCCCGGGGT +
Preference number: 5 (lower is better)
Translates to: GFNCQQLAGSDGTEGERESPSSR*IIRPRG
Trigger: ACCCCGGGGTCTTATTATCAACCTGGAGGACGGTGA...TTCTCTTTCTCCCTCTGTCCCATCTGAGCCAGCCAGCTGTTGGCAATTAAAACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000025062.5
CDS CCA 90 bp ATGGCCTTGTGTGTGCAACGGGCAATGCCCAGGATGGTGTCATGTTaGCAGCATCTGCTCTTACACTGCATACTGTTCAAACAGATCTCA +
Preference number: 5 (lower is better)
Translates to: MALCVQRAMPRMVSC*QHLLLHCILFKQIS
Trigger: TGAGATCTGTTTGAACAGTATGCAGTGTAAGAGCAGATGCTGCCAACATGACACCATCCTGGGCATTGCCCGTTGCACACACAAGGCCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025062.5
CDS GCA 90 bp GCAATGCCCAGGATGGTGTCATGTTGGCAGCATCTGCTCTTACACTaGATACTGTTCAAACAGATCTCACCGTCCTCCAGGTTGATAATA +
Preference number: 5 (lower is better)
Translates to: AMPRMVSCWQHLLLH*ILFKQISPSSRLII
Trigger: TATTATCAACCTGGAGGACGGTGAGATCTGTTTGAACAGTATGCAGTGTAAGAGCAGATGCTGCCAACATGACACCATCCTGGGCATTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025062.5
CDS GCA 72 bp CTCCAGGTTGATAATAAGACCCCGGGGTCCGGGAGCTaGATAGGCCACTGCAAGGAGGGACACAAGCAGAAG +
Preference number: 6 (lower is better)
Translates to: LQVDNKTPGSGS*IGHCKEGHKQK
Trigger: CTTCTGCTTGTGTCCCTCCTTGCAGTGGCCTATGCAGCTCCCGGACCCCGGGGTCTTATTATCAACCTGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025062.5
CDS GCA 72 bp TTGGGGAGCACTCGCTGTTCTCCATGGCCTTGTGTGTaGAACGGGCAATGCCCAGGATGGTGTCATGTTGGC +
Preference number: 6 (lower is better)
Translates to: LGSTRCSPWPCV*NGQCPGWCHVG
Trigger: GCCAACATGACACCATCCTGGGCATTGCCCGTTGCACACACAAGGCCATGGAGAACAGCGAGTGCTCCCCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025062.5
CDS GCA 72 bp GGTCAGGTTGATAATAAGACCCCGGGGTCCGGGAGCTaGATAGGCCACTGCAAGGAGGGACACAAGCAGAAG +
Preference number: 6 (lower is better)
Translates to: GQVDNKTPGSGS*IGHCKEGHKQK
Trigger: CTTCTGCTTGTGTCCCTCCTTGCAGTGGCCTATGCAGCTCCCGGACCCCGGGGTCTTATTATCAACCTGACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114785.3
CDS CCA 72 bp CATAGAGGGTCTTTGGGGAGCACTCGCTGTTCTCCATaGCCTTGTGTGTGCAACGGGCAATGCCCAGGATGG +
Preference number: 6 (lower is better)
Translates to: HRGSLGSTRCSP*PCVCNGQCPGW
Trigger: CCATCCTGGGCATTGCCCGTTGCACACACAAGGCCATGGAGAACAGCGAGTGCTCCCCAAAGACCCTCTATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025062.5
CDS GCA 72 bp AATAAGACCCCGGGGTCCGGGAGCTGCATAGGCCACTaGAAGGAGGGACACAAGCAGAAGAACAAGGACCTT +
Preference number: 6 (lower is better)
Translates to: NKTPGSGSCIGH*KEGHKQKNKDL
Trigger: AAGGTCCTTGTTCTTCTGCTTGTGTCCCTCCTTGCAGTGGCCTATGCAGCTCCCGGACCCCGGGGTCTTATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025062.5
ENSMUST00000114785.3
CDS GCA 72 bp CGCTGTTCTCCATGGCCTTGTGTGTGCAACGGGCAATaGCCAGGATGGTGTCATGTTGGCAGCATCTGCTCT +
Preference number: 6 (lower is better)
Translates to: RCSPWPCVCNGQ*PGWCHVGSICS
Trigger: AGAGCAGATGCTGCCAACATGACACCATCCTGGGCATTGCCCGTTGCACACACAAGGCCATGGAGAACAGCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025062.5
CDS CCA 72 bp ACAGGGACACCGGTAGTAGATCCCATAGAGGGTCTTTaGGGAGCACTCGCTGTTCTCCATGGCCTTGTGTGT +
Preference number: 6 (lower is better)
Translates to: TGTPVVDPIEGL*GALAVLHGLVC
Trigger: ACACACAAGGCCATGGAGAACAGCGAGTGCTCCCCAAAGACCCTCTATGGGATCTACTACCGGTGTCCCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025062.5
CDS CAA 90 bp CATGGCCTTGTGTGTGCAACGGGCAATGCCCAGGATGGTGTCATGTaGGCAGCATCTGCTCTTACACTGCATACTGTTCAAACAGATCTC +
Preference number: 6 (lower is better)
Translates to: HGLVCATGNAQDGVM*AASALTLHTVQTDL
Trigger: GAGATCTGTTTGAACAGTATGCAGTGTAAGAGCAGATGCTGCCAACATGACACCATCCTGGGCATTGCCCGTTGCACACACAAGGCCATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025062.5
CDS CAA 72 bp GTGTGTGCAACGGGCAATGCCCAGGATGGTGTCATGTaGGCAGCATCTGCTCTTACACTGCATACTGTTCAA +
Preference number: 6 (lower is better)
Translates to: VCATGNAQDGVM*AASALTLHTVQ
Trigger: TTGAACAGTATGCAGTGTAAGAGCAGATGCTGCCAACATGACACCATCCTGGGCATTGCCCGTTGCACACAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025062.5
CDS CCA 72 bp TGTGTGCAACGGGCAATGCCCAGGATGGTGTCATGTTaGCAGCATCTGCTCTTACACTGCATACTGTTCAAA +
Preference number: 6 (lower is better)
Translates to: CVQRAMPRMVSC*QHLLLHCILFK
Trigger: TTTGAACAGTATGCAGTGTAAGAGCAGATGCTGCCAACATGACACCATCCTGGGCATTGCCCGTTGCACACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025062.5