Pregenerated sensors for CLPP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000002660Ensembl transcript IDs: ENSMUST00000002735.9
Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 72 bp | GCAACCTCAATCCACATCTCCTCTAGGGGTTGTTCTTaGGCCCAGCAGAGGAAGTTTCAGTCTGGTCTCCAC | + |
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Preference number: 3 (lower is better) Translates to: ATSIHISSRGCS*AQQRKFQSGLH Trigger: GTGGAGACCAGACTGAAACTTCCTCTGCTGGGCCCAAGAACAACCCCTAGAGGAGATGTGGATTGAGGTTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS-3UTR GCA 90 bp | TTAAATCACAGTGTCTCAGGCAGTCTGCCCTGCTCTGAGGGCAACCTCAATCCAGGCGCATGCCCGGGCTaGCAGCAGCGAGGAGCAGGG | + |
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Preference number: 4 (lower is better) Translates to: LNHSVSGSLPCSEGNLNPGACPG*QQRGAG Trigger: CCCTGCTCCTCGCTGCTGGCAGCCCGGGCATGCGCC...TGGATTGAGGTTGCCCTCAGAGCAGGGCAGACTGCCTGAGACACTGTGATTTAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS-3UTR TCA 90 bp | GTCTGCCCTGCTCTGAGGGCAACCTCAATCCACATCTCCTCTAGGGGTTGTTCTGCTCCTCCGCAGGGGTaGGCAGCTCACAGCAGTCCA | + |
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Preference number: 4 (lower is better) Translates to: VCPALRATSIHISSRGCSAPPQG*AAHSSP Trigger: TGGACTGCTGTGAGCTGCTCACCCCTGCGGAGGAGC...AGAACAACCCCTAGAGGAGATGTGGATTGAGGTTGCCCTCAGAGCAGGGCAGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS-3UTR CCA 90 bp | ACAGTGTCTCAGGCAGTCTGCCCTGCTCTGAGGGCAACCTCAATCCACATCTCCGCAGGGAGCCCATGCTaGCAGCCTGTCCAACACACC | + |
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Preference number: 4 (lower is better) Translates to: TVSQAVCPALRATSIHISAGSPC*QPVQHT Trigger: GGTGTGTTGGACAGGCTGCCAGCATGGGCTCCCTGC...GGAGATGTGGATTGAGGTTGCCCTCAGAGCAGGGCAGACTGCCTGAGACACTGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS-3UTR GCA 90 bp | TGCCCTGCTCTGAGGGCAACCTCAATCCACATCTCCTCTAGGGGTTGTTCTTGGGGAGCAGGGAGCCCATaGTGGCAGCCTGTCCAACAC | + |
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Preference number: 4 (lower is better) Translates to: CPALRATSIHISSRGCSWGAGSP*WQPVQH Trigger: GTGTTGGACAGGCTGCCAGCATGGGCTCCCTGCTCC...CCAAGAACAACCCCTAGAGGAGATGTGGATTGAGGTTGCCCTCAGAGCAGGGCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS-3UTR CCA 90 bp | AATCACAGTGTCTCAGGCAGTCTGCCCTGCTCTGAGGGCAACCTCAATCCACATCTGTGGCTTGGCCCCTaGCTCCTCCAGAGGGCTGGT | + |
|
Preference number: 4 (lower is better) Translates to: NHSVSGSLPCSEGNLNPHLWLGP*LLQRAG Trigger: ACCAGCCCTCTGGAGGAGCCAGGGGCCAAGCCACAG...ATGTGGATTGAGGTTGCCCTCAGAGCAGGGCAGACTGCCTGAGACACTGTGATT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS-3UTR CCA 90 bp | ACAGTGTCTCAGGCAGTCTGCCCTGCTCTGAGGGCAACCTCAATCCACATCTCCACTCTTGGGCCTCCATaGGGCTCATGTAGCGGTCCC | + |
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Preference number: 4 (lower is better) Translates to: TVSQAVCPALRATSIHISTLGPP*GSCSGP Trigger: GGGACCGCTACATGAGCCCCATGGAGGCCCAAGAGT...GGAGATGTGGATTGAGGTTGCCCTCAGAGCAGGGCAGACTGCCTGAGACACTGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS-3UTR CCA 90 bp | ACAGTGTCTCAGGCAGTCTGCCCTGCTCTGAGGGCAACCTCAATCCACATCTCCCTCCCCGTCCTGAGGTaGGTGGACCAAGACCTTGTC | + |
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Preference number: 4 (lower is better) Translates to: TVSQAVCPALRATSIHISLPVLR*VDQDLV Trigger: GACAAGGTCTTGGTCCACCCACCTCAGGACGGGGAG...GGAGATGTGGATTGAGGTTGCCCTCAGAGCAGGGCAGACTGCCTGAGACACTGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS-3UTR TCA 90 bp | AATCACAGTGTCTCAGGCAGTCTGCCCTGCTCTGAGGGCAACCTCAATCCACATCGTCAATCGGGCCCATaGCGCACACGATGCGTTCCC | + |
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Preference number: 4 (lower is better) Translates to: NHSVSGSLPCSEGNLNPHRQSGP*RTRCVP Trigger: GGGAACGCATCGTGTGCGTCATGGGCCCGATTGACG...ATGTGGATTGAGGTTGCCCTCAGAGCAGGGCAGACTGCCTGAGACACTGTGATT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS-3UTR CCA 90 bp | AATCACAGTGTCTCAGGCAGTCTGCCCTGCTCTGAGGGCAACCTCAATCCACATGCGATGTCTGTGGCTTaGCCCCTGGCTCCTCCAGAG | + |
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Preference number: 4 (lower is better) Translates to: NHSVSGSLPCSEGNLNPHAMSVA*PLAPPE Trigger: CTCTGGAGGAGCCAGGGGCCAAGCCACAGACATCGC...ATGTGGATTGAGGTTGCCCTCAGAGCAGGGCAGACTGCCTGAGACACTGTGATT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS-3UTR CCA 90 bp | AGTGTCTCAGGCAGTCTGCCCTGCTCTGAGGGCAACCTCAATCCACATCTCCTCCTTCTGTACCAGTTCTaGCTCATCCTCCCCGTCCTG | + |
|
Preference number: 4 (lower is better) Translates to: SVSGSLPCSEGNLNPHLLLLYQF*LILPVL Trigger: CAGGACGGGGAGGATGAGCCAGAACTGGTACAGAAG...GAGGAGATGTGGATTGAGGTTGCCCTCAGAGCAGGGCAGACTGCCTGAGACACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS-3UTR CCA 90 bp | TCCTCTAGGGGTTGTTCTTGGGCCCAGCAGAGGAAGTTTCAGTCTGGTCTCCACTTTCCTCTGCCTGGATaGCGATGTCTGTGGCTTGGC | + |
|
Preference number: 4 (lower is better) Translates to: SSRGCSWAQQRKFQSGLHFPLPG*RCLWLG Trigger: GCCAAGCCACAGACATCGCCATCCAGGCAGAGGAAA...GTGGAGACCAGACTGAAACTTCCTCTGCTGGGCCCAAGAACAACCCCTAGAGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS-3UTR CCA 90 bp | ACAGTGTCTCAGGCAGTCTGCCCTGCTCTGAGGGCAACCTCAATCCACATCTCCAAGATGCCAAACTCTTaGGCCTCCATGGGGCTCATG | + |
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Preference number: 4 (lower is better) Translates to: TVSQAVCPALRATSIHISKMPNS*ASMGLM Trigger: CATGAGCCCCATGGAGGCCCAAGAGTTTGGCATCTT...GGAGATGTGGATTGAGGTTGCCCTCAGAGCAGGGCAGACTGCCTGAGACACTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS-3UTR TCA 90 bp | TGCCCTGCTCTGAGGGCAACCTCAATCCACATCTCCTCTAGGGGTTGTTCTTGGAGGGCTGGTGGATCATaGTTCTGGAATTGGGCAGTG | + |
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Preference number: 4 (lower is better) Translates to: CPALRATSIHISSRGCSWRAGGS*FWNWAV Trigger: CACTGCCCAATTCCAGAATCATGATCCACCAGCCCT...CCAAGAACAACCCCTAGAGGAGATGTGGATTGAGGTTGCCCTCAGAGCAGGGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS-3UTR CCA 90 bp | ACAGTGTCTCAGGCAGTCTGCCCTGCTCTGAGGGCAACCTCAATCCACATCTCCCCTCCAGAGGGCTGGTaGATCATGATTCTGGAATTG | + |
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Preference number: 4 (lower is better) Translates to: TVSQAVCPALRATSIHISPPEGW*IMILEL Trigger: CAATTCCAGAATCATGATCCACCAGCCCTCTGGAGG...GGAGATGTGGATTGAGGTTGCCCTCAGAGCAGGGCAGACTGCCTGAGACACTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS-3UTR CCA 90 bp | ACAGTGTCTCAGGCAGTCTGCCCTGCTCTGAGGGCAACCTCAATCCACATCTCCATGATTTCCTCTGCCTaGATGGCGATGTCTGTGGCT | + |
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Preference number: 4 (lower is better) Translates to: TVSQAVCPALRATSIHISMISSA*MAMSVA Trigger: AGCCACAGACATCGCCATCCAGGCAGAGGAAATCAT...GGAGATGTGGATTGAGGTTGCCCTCAGAGCAGGGCAGACTGCCTGAGACACTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS-3UTR CCA 90 bp | TCTCAGGCAGTCTGCCCTGCTCTGAGGGCAACCTCAATCCACATCTCCTCTAGGCCTGTAGGCTCTGCTTaGTGTGTTTGGCGTAGATGT | + |
|
Preference number: 4 (lower is better) Translates to: SQAVCPALRATSIHISSRPVGSA*CVWRRC Trigger: ACATCTACGCCAAACACACCAAGCAGAGCCTACAGG...CCTAGAGGAGATGTGGATTGAGGTTGCCCTCAGAGCAGGGCAGACTGCCTGAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS-3UTR GCA 90 bp | TCTCAGGCAGTCTGCCCTGCTCTGAGGGCAACCTCAATCCACATCTCCTCTAGGCTTCATGATTTCCTCTaGCTGGATGGCGATGTCTGT | + |
|
Preference number: 4 (lower is better) Translates to: SQAVCPALRATSIHISSRLHDFL*LDGDVC Trigger: ACAGACATCGCCATCCAGGCAGAGGAAATCATGAAG...CCTAGAGGAGATGTGGATTGAGGTTGCCCTCAGAGCAGGGCAGACTGCCTGAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS-3UTR CCA 90 bp | TCCTCTAGGGGTTGTTCTTGGGCCCAGCAGAGGAAGTTTCAGTCTGGTCTCCACTGTAAGAACAACAGCTaGGCAATGACCAGACTGGCC | + |
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Preference number: 4 (lower is better) Translates to: SSRGCSWAQQRKFQSGLHCKNNS*AMTRLA Trigger: GGCCAGTCTGGTCATTGCCCAGCTGTTGTTCTTACA...GTGGAGACCAGACTGAAACTTCCTCTGCTGGGCCCAAGAACAACCCCTAGAGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS-3UTR CCA 90 bp | TTAAATCACAGTGTCTCAGGCAGTCTGCCCTGCTCTGAGGGCAACCTCAATCCAGCATTGTGTCGTAGATaGCCAGGCCCGCAGTTACCA | + |
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Preference number: 4 (lower is better) Translates to: LNHSVSGSLPCSEGNLNPALCRR*PGPQLP Trigger: TGGTAACTGCGGGCCTGGCCATCTACGACACAATGC...TGGATTGAGGTTGCCCTCAGAGCAGGGCAGACTGCCTGAGACACTGTGATTTAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS-3UTR CCA 90 bp | ACATCTCCTCTAGGGGTTGTTCTTGGGCCCAGCAGAGGAAGTTTCAGTCTGGTCTCTGCTTGGTGTGTTTaGCGTAGATGTTGTATAGCT | + |
|
Preference number: 4 (lower is better) Translates to: TSPLGVVLGPSRGSFSLVSAWCV*RRCCIA Trigger: AGCTATACAACATCTACGCCAAACACACCAAGCAGA...GACCAGACTGAAACTTCCTCTGCTGGGCCCAAGAACAACCCCTAGAGGAGATGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS GCA 90 bp | AATGGCGCATGCCCGGGCTGCCAGCAGCGAGGAGCAGGGAGCCCATaGTGGCAGCCTGTCCAACACACCACGTGCAGATGGGGTTCAGGA | + |
|
Preference number: 5 (lower is better) Translates to: NGACPGCQQRGAGSP*WQPVQHTTCRWGSG Trigger: TCCTGAACCCCATCTGCACGTGGTGTGTTGGACAGGCTGCCAGCATGGGCTCCCTGCTCCTCGCTGCTGGCAGCCCGGGCATGCGCCATT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS TCA 90 bp | CGGGAAAGCTCGCGTCGCAGTTCCATGCAGGCTCCTCCGCAGGGGTaGGCAGCTCACAGCAGTCCATGGCGGGGAGAAATGCACGGCAAG | + |
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Preference number: 5 (lower is better) Translates to: RESSRRSSMQAPPQG*AAHSSPWRGEMHGK Trigger: CTTGCCGTGCATTTCTCCCCGCCATGGACTGCTGTGAGCTGCTCACCCCTGCGGAGGAGCCTGCATGGAACTGCGACGCGAGCTTTCCCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS TCA 90 bp | CATAAGCGCGCTCGCCTCGACCCGTCTGCTCCACCACTATGGGGATaGGCGGGAAAGCTCGCGTCGCAGTTCCATGCAGGCTCCTCCGCA | + |
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Preference number: 5 (lower is better) Translates to: HKRARLDPSAPPLWG*AGKLASQFHAGSSA Trigger: TGCGGAGGAGCCTGCATGGAACTGCGACGCGAGCTTTCCCGCTCATCCCCATAGTGGTGGAGCAGACGGGTCGAGGCGAGCGCGCTTATG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS TCA 90 bp | GGCTCCTCCAGAGGGCTGGTGGATCATGATTCTGGAATTGGGCAGTaGATGGCGCATGCCCGGGCTGCCAGCAGCGAGGAGCAGGGAGCC | + |
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Preference number: 5 (lower is better) Translates to: GSSRGLVDHDSGIGQ*MAHARAASSEEQGA Trigger: GGCTCCCTGCTCCTCGCTGCTGGCAGCCCGGGCATGCGCCATTCACTGCCCAATTCCAGAATCATGATCCACCAGCCCTCTGGAGGAGCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS GCA 90 bp | TCCACCACTATGGGGATGAGCGGGAAAGCTCGCGTCGCAGTTCCATaGAGGCTCCTCCGCAGGGGTGAGCAGCTCACAGCAGTCCATGGC | + |
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Preference number: 5 (lower is better) Translates to: STTMGMSGKARVAVP*RLLRRGEQLTAVHG Trigger: GCCATGGACTGCTGTGAGCTGCTCACCCCTGCGGAGGAGCCTGCATGGAACTGCGACGCGAGCTTTCCCGCTCATCCCCATAGTGGTGGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS CCA 90 bp | CCTCCAGAGGGCTGGTGGATCATGATTCTGGAATTGGGCAGTGAATaGCGCATGCCCGGGCTGCCAGCAGCGAGGAGCAGGGAGCCCATG | + |
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Preference number: 5 (lower is better) Translates to: PPEGWWIMILELGSE*RMPGLPAARSREPM Trigger: CATGGGCTCCCTGCTCCTCGCTGCTGGCAGCCCGGGCATGCGCCATTCACTGCCCAATTCCAGAATCATGATCCACCAGCCCTCTGGAGG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS TCA 90 bp | TGTCTGTGGCTTGGCCCCTGGCTCCTCCAGAGGGCTGGTGGATCATaGTTCTGGAATTGGGCAGTGAATGGCGCATGCCCGGGCTGCCAG | + |
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Preference number: 5 (lower is better) Translates to: CLWLGPWLLQRAGGS*FWNWAVNGACPGCQ Trigger: CTGGCAGCCCGGGCATGCGCCATTCACTGCCCAATTCCAGAATCATGATCCACCAGCCCTCTGGAGGAGCCAGGGGCCAAGCCACAGACA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS CCA 90 bp | GCAGGGAGCCCATGCTGGCAGCCTGTCCAACACACCACGTGCAGATaGGGTTCAGGATGTACTGCATTGTGTCGTAGATGGCCAGGCCCG | + |
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Preference number: 5 (lower is better) Translates to: AGSPCWQPVQHTTCR*GSGCTALCRRWPGP Trigger: CGGGCCTGGCCATCTACGACACAATGCAGTACATCCTGAACCCCATCTGCACGTGGTGTGTTGGACAGGCTGCCAGCATGGGCTCCCTGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS CCA 90 bp | ATGGCGATGTCTGTGGCTTGGCCCCTGGCTCCTCCAGAGGGCTGGTaGATCATGATTCTGGAATTGGGCAGTGAATGGCGCATGCCCGGG | + |
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Preference number: 5 (lower is better) Translates to: MAMSVAWPLAPPEGW*IMILELGSEWRMPG Trigger: CCCGGGCATGCGCCATTCACTGCCCAATTCCAGAATCATGATCCACCAGCCCTCTGGAGGAGCCAGGGGCCAAGCCACAGACATCGCCAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS GCA 90 bp | CATCCTCCCCGTCCTGAGGTGGGTGGACCAAGACCTTGTCCAAGATaGCAAACTCTTGGGCCTCCATGGGGCTCATGTAGCGGTCCCTCT | + |
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Preference number: 5 (lower is better) Translates to: HPPRPEVGGPRPCPR*QTLGPPWGSCSGPS Trigger: AGAGGGACCGCTACATGAGCCCCATGGAGGCCCAAGAGTTTGGCATCTTGGACAAGGTCTTGGTCCACCCACCTCAGGACGGGGAGGATG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS-3UTR CAA 90 bp | TGCCCTGCTCTGAGGGCAACCTCAATCCACATCTCCTCTAGGGGTTGTTCTTGGGGCGATGTCTGTGGCTaGGCCCCTGGCTCCTCCAGA | + |
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Preference number: 5 (lower is better) Translates to: CPALRATSIHISSRGCSWGDVCG*APGSSR Trigger: TCTGGAGGAGCCAGGGGCCAAGCCACAGACATCGCC...CCAAGAACAACCCCTAGAGGAGATGTGGATTGAGGTTGCCCTCAGAGCAGGGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS GCA 90 bp | CGAGGAGCAGGGAGCCCATGCTGGCAGCCTGTCCAACACACCACGTaGAGATGGGGTTCAGGATGTACTGCATTGTGTCGTAGATGGCCA | + |
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Preference number: 5 (lower is better) Translates to: RGAGSPCWQPVQHTT*RWGSGCTALCRRWP Trigger: TGGCCATCTACGACACAATGCAGTACATCCTGAACCCCATCTGCACGTGGTGTGTTGGACAGGCTGCCAGCATGGGCTCCCTGCTCCTCG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS TCA 90 bp | GTGGCAGTCTCCTTCTGTACCAGTTCTGGCTCATCCTCCCCGTCCTaGGGTGGGTGGACCAAGACCTTGTCCAAGATGCCAAACTCTTGG | + |
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Preference number: 5 (lower is better) Translates to: VAVSFCTSSGSSSPS*GGWTKTLSKMPNSW Trigger: CCAAGAGTTTGGCATCTTGGACAAGGTCTTGGTCCACCCACCTCAGGACGGGGAGGATGAGCCAGAACTGGTACAGAAGGAGACTGCCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS CCA 90 bp | GGTGGACCAAGACCTTGTCCAAGATGCCAAACTCTTGGGCCTCCATaGGGCTCATGTAGCGGTCCCTCTCCATTGCTGACTCGATCACCT | + |
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Preference number: 5 (lower is better) Translates to: GGPRPCPRCQTLGPP*GSCSGPSPLLTRSP Trigger: AGGTGATCGAGTCAGCAATGGAGAGGGACCGCTACATGAGCCCCATGGAGGCCCAAGAGTTTGGCATCTTGGACAAGGTCTTGGTCCACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS CCA 90 bp | AGTCTCCTTCTGTACCAGTTCTGGCTCATCCTCCCCGTCCTGAGGTaGGTGGACCAAGACCTTGTCCAAGATGCCAAACTCTTGGGCCTC | + |
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Preference number: 5 (lower is better) Translates to: SLLLYQFWLILPVLR*VDQDLVQDAKLLGL Trigger: GAGGCCCAAGAGTTTGGCATCTTGGACAAGGTCTTGGTCCACCCACCTCAGGACGGGGAGGATGAGCCAGAACTGGTACAGAAGGAGACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS-3UTR CAA 90 bp | TCCTCTAGGGGTTGTTCTTGGGCCCAGCAGAGGAAGTTTCAGTCTGGTCTCCACAGCGGTCCCTCTCCATaGCTGACTCGATCACCTGTA | + |
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Preference number: 5 (lower is better) Translates to: SSRGCSWAQQRKFQSGLHSGPSP*LTRSPV Trigger: TACAGGTGATCGAGTCAGCAATGGAGAGGGACCGCT...GTGGAGACCAGACTGAAACTTCCTCTGCTGGGCCCAAGAACAACCCCTAGAGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS-3UTR CAA 90 bp | TCCTCTAGGGGTTGTTCTTGGGCCCAGCAGAGGAAGTTTCAGTCTGGTCTCCACTCAGGATGTACTGCATaGTGTCGTAGATGGCCAGGC | + |
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Preference number: 5 (lower is better) Translates to: SSRGCSWAQQRKFQSGLHSGCTA*CRRWPG Trigger: GCCTGGCCATCTACGACACAATGCAGTACATCCTGA...GTGGAGACCAGACTGAAACTTCCTCTGCTGGGCCCAAGAACAACCCCTAGAGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS-3UTR CAA 90 bp | AATCACAGTGTCTCAGGCAGTCTGCCCTGCTCTGAGGGCAACCTCAATCCACATGGGTGGACCAAGACCTaGTCCAAGATGCCAAACTCT | + |
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Preference number: 5 (lower is better) Translates to: NHSVSGSLPCSEGNLNPHGWTKT*SKMPNS Trigger: AGAGTTTGGCATCTTGGACAAGGTCTTGGTCCACCC...ATGTGGATTGAGGTTGCCCTCAGAGCAGGGCAGACTGCCTGAGACACTGTGATT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS-3UTR CAA 90 bp | ACATCTCCTCTAGGGGTTGTTCTTGGGCCCAGCAGAGGAAGTTTCAGTCTGGTCATCATGATTCTGGAATaGGGCAGTGAATGGCGCATG | + |
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Preference number: 5 (lower is better) Translates to: TSPLGVVLGPSRGSFSLVIMILE*GSEWRM Trigger: CATGCGCCATTCACTGCCCAATTCCAGAATCATGAT...GACCAGACTGAAACTTCCTCTGCTGGGCCCAAGAACAACCCCTAGAGGAGATGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS CCA 90 bp | AGCGGTCCCTCTCCATTGCTGACTCGATCACCTGTAGGCTCTGCTTaGTGTGTTTGGCGTAGATGTTGTATAGCTGCTTTTTCAGCTTCA | + |
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Preference number: 5 (lower is better) Translates to: SGPSPLLTRSPVGSA*CVWRRCCIAAFSAS Trigger: TGAAGCTGAAAAAGCAGCTATACAACATCTACGCCAAACACACCAAGCAGAGCCTACAGGTGATCGAGTCAGCAATGGAGAGGGACCGCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS TCA 72 bp | TCGCGTCGCAGTTCCATGCAGGCTCCTCCGCAGGGGTaGGCAGCTCACAGCAGTCCATGGCGGGGAGAAATG | + |
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Preference number: 6 (lower is better) Translates to: SRRSSMQAPPQG*AAHSSPWRGEM Trigger: CATTTCTCCCCGCCATGGACTGCTGTGAGCTGCTCACCCCTGCGGAGGAGCCTGCATGGAACTGCGACGCGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS GCA 72 bp | ATGGGGATGAGCGGGAAAGCTCGCGTCGCAGTTCCATaGAGGCTCCTCCGCAGGGGTGAGCAGCTCACAGCA | + |
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Preference number: 6 (lower is better) Translates to: MGMSGKARVAVP*RLLRRGEQLTA Trigger: TGCTGTGAGCTGCTCACCCCTGCGGAGGAGCCTGCATGGAACTGCGACGCGAGCTTTCCCGCTCATCCCCAT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS CCA 72 bp | GGCTGGTGGATCATGATTCTGGAATTGGGCAGTGAATaGCGCATGCCCGGGCTGCCAGCAGCGAGGAGCAGG | + |
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Preference number: 6 (lower is better) Translates to: GWWIMILELGSE*RMPGLPAARSR Trigger: CCTGCTCCTCGCTGCTGGCAGCCCGGGCATGCGCCATTCACTGCCCAATTCCAGAATCATGATCCACCAGCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS CCA 72 bp | CGTCGGCGCTGTGGCAGTCTCCTTCTGTACCAGTTCTaGCTCATCCTCCCCGTCCTGAGGTGGGTGGACCAA | + |
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Preference number: 6 (lower is better) Translates to: RRRCGSLLLYQF*LILPVLRWVDQ Trigger: TTGGTCCACCCACCTCAGGACGGGGAGGATGAGCCAGAACTGGTACAGAAGGAGACTGCCACAGCGCCGACG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS TCA 72 bp | AGAGGGCTGGTGGATCATGATTCTGGAATTGGGCAGTaGATGGCGCATGCCCGGGCTGCCAGCAGCGAGGAG | + |
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Preference number: 6 (lower is better) Translates to: RGLVDHDSGIGQ*MAHARAASSEE Trigger: CTCCTCGCTGCTGGCAGCCCGGGCATGCGCCATTCACTGCCCAATTCCAGAATCATGATCCACCAGCCCTCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS TCA 72 bp | CTTGGCCCCTGGCTCCTCCAGAGGGCTGGTGGATCATaGTTCTGGAATTGGGCAGTGAATGGCGCATGCCCG | + |
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Preference number: 6 (lower is better) Translates to: LGPWLLQRAGGS*FWNWAVNGACP Trigger: CGGGCATGCGCCATTCACTGCCCAATTCCAGAATCATGATCCACCAGCCCTCTGGAGGAGCCAGGGGCCAAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS CCA 72 bp | TCTGTGGCTTGGCCCCTGGCTCCTCCAGAGGGCTGGTaGATCATGATTCTGGAATTGGGCAGTGAATGGCGC | + |
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Preference number: 6 (lower is better) Translates to: SVAWPLAPPEGW*IMILELGSEWR Trigger: GCGCCATTCACTGCCCAATTCCAGAATCATGATCCACCAGCCCTCTGGAGGAGCCAGGGGCCAAGCCACAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS CAA 90 bp | CCTGTCCAACACACCACGTGCAGATGGGGTTCAGGATGTACTGCATaGTGTCGTAGATGGCCAGGCCCGCAGTTACCACACCACCTGGGC | + |
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Preference number: 6 (lower is better) Translates to: PVQHTTCRWGSGCTA*CRRWPGPQLPHHLG Trigger: GCCCAGGTGGTGTGGTAACTGCGGGCCTGGCCATCTACGACACAATGCAGTACATCCTGAACCCCATCTGCACGTGGTGTGTTGGACAGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS GCA 72 bp | GGGAGCCCATGCTGGCAGCCTGTCCAACACACCACGTaGAGATGGGGTTCAGGATGTACTGCATTGTGTCGT | + |
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Preference number: 6 (lower is better) Translates to: GSPCWQPVQHTT*RWGSGCTALCR Trigger: ACGACACAATGCAGTACATCCTGAACCCCATCTGCACGTGGTGTGTTGGACAGGCTGCCAGCATGGGCTCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS GCA 72 bp | CGTCCTGAGGTGGGTGGACCAAGACCTTGTCCAAGATaGCAAACTCTTGGGCCTCCATGGGGCTCATGTAGC | + |
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Preference number: 6 (lower is better) Translates to: RPEVGGPRPCPR*QTLGPPWGSCS Trigger: GCTACATGAGCCCCATGGAGGCCCAAGAGTTTGGCATCTTGGACAAGGTCTTGGTCCACCCACCTCAGGACG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS CAA 90 bp | CAAACTCTTGGGCCTCCATGGGGCTCATGTAGCGGTCCCTCTCCATaGCTGACTCGATCACCTGTAGGCTCTGCTTGGTGTGTTTGGCGT | + |
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Preference number: 6 (lower is better) Translates to: QTLGPPWGSCSGPSP*LTRSPVGSAWCVWR Trigger: ACGCCAAACACACCAAGCAGAGCCTACAGGTGATCGAGTCAGCAATGGAGAGGGACCGCTACATGAGCCCCATGGAGGCCCAAGAGTTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS TCA 72 bp | TCCTTCTGTACCAGTTCTGGCTCATCCTCCCCGTCCTaGGGTGGGTGGACCAAGACCTTGTCCAAGATGCCA | + |
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Preference number: 6 (lower is better) Translates to: SFCTSSGSSSPS*GGWTKTLSKMP Trigger: TGGCATCTTGGACAAGGTCTTGGTCCACCCACCTCAGGACGGGGAGGATGAGCCAGAACTGGTACAGAAGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS CCA 72 bp | AGATGGGGTTCAGGATGTACTGCATTGTGTCGTAGATaGCCAGGCCCGCAGTTACCACACCACCTGGGCTGT | + |
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Preference number: 6 (lower is better) Translates to: RWGSGCTALCRR*PGPQLPHHLGC Trigger: ACAGCCCAGGTGGTGTGGTAACTGCGGGCCTGGCCATCTACGACACAATGCAGTACATCCTGAACCCCATCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS CCA 72 bp | ATGTCTGTGGCTTGGCCCCTGGCTCCTCCAGAGGGCTaGTGGATCATGATTCTGGAATTGGGCAGTGAATGG | + |
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Preference number: 6 (lower is better) Translates to: MSVAWPLAPPEG*WIMILELGSEW Trigger: CCATTCACTGCCCAATTCCAGAATCATGATCCACCAGCCCTCTGGAGGAGCCAGGGGCCAAGCCACAGACAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS CCA 72 bp | CTGTACCAGTTCTGGCTCATCCTCCCCGTCCTGAGGTaGGTGGACCAAGACCTTGTCCAAGATGCCAAACTC | + |
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Preference number: 6 (lower is better) Translates to: LYQFWLILPVLR*VDQDLVQDAKL Trigger: GAGTTTGGCATCTTGGACAAGGTCTTGGTCCACCCACCTCAGGACGGGGAGGATGAGCCAGAACTGGTACAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS CAA 72 bp | CACACCACGTGCAGATGGGGTTCAGGATGTACTGCATaGTGTCGTAGATGGCCAGGCCCGCAGTTACCACAC | + |
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Preference number: 6 (lower is better) Translates to: HTTCRWGSGCTA*CRRWPGPQLPH Trigger: GTGTGGTAACTGCGGGCCTGGCCATCTACGACACAATGCAGTACATCCTGAACCCCATCTGCACGTGGTGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS CCA 72 bp | CCATGCTGGCAGCCTGTCCAACACACCACGTGCAGATaGGGTTCAGGATGTACTGCATTGTGTCGTAGATGG | + |
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Preference number: 6 (lower is better) Translates to: PCWQPVQHTTCR*GSGCTALCRRW Trigger: CCATCTACGACACAATGCAGTACATCCTGAACCCCATCTGCACGTGGTGTGTTGGACAGGCTGCCAGCATGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS CCA 72 bp | AGACCTTGTCCAAGATGCCAAACTCTTGGGCCTCCATaGGGCTCATGTAGCGGTCCCTCTCCATTGCTGACT | + |
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Preference number: 6 (lower is better) Translates to: RPCPRCQTLGPP*GSCSGPSPLLT Trigger: AGTCAGCAATGGAGAGGGACCGCTACATGAGCCCCATGGAGGCCCAAGAGTTTGGCATCTTGGACAAGGTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS CCA 72 bp | GGCTTCTTGTTGCTTTCAGACTGTAAGAACAACAGCTaGGCAATGACCAGACTGGCCACACTGTCGTCAATC | + |
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Preference number: 6 (lower is better) Translates to: GFLLLSDCKNNS*AMTRLATLSSI Trigger: GATTGACGACAGTGTGGCCAGTCTGGTCATTGCCCAGCTGTTGTTCTTACAGTCTGAAAGCAACAAGAAGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS TCA 72 bp | TGGCGTAGATGTTGTATAGCTGCTTTTTCAGCTTCATaGTTTCCTCTGCCTGGATGGCGATGTCTGTGGCTT | + |
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Preference number: 6 (lower is better) Translates to: WRRCCIAAFSAS*FPLPGWRCLWL Trigger: AAGCCACAGACATCGCCATCCAGGCAGAGGAAATCATGAAGCTGAAAAAGCAGCTATACAACATCTACGCCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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| CDS CCA 72 bp | TCTCCATTGCTGACTCGATCACCTGTAGGCTCTGCTTaGTGTGTTTGGCGTAGATGTTGTATAGCTGCTTTT | + |
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Preference number: 6 (lower is better) Translates to: SPLLTRSPVGSA*CVWRRCCIAAF Trigger: AAAAGCAGCTATACAACATCTACGCCAAACACACCAAGCAGAGCCTACAGGTGATCGAGTCAGCAATGGAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002735.9 |
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