Pregenerated sensors for CLP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027079Ensembl transcript IDs: ENSMUST00000028475.9, ENSMUST00000165219.8
Found 94 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ATGAACAGGGGCTATAGAGATGGTTTAGCAGTTAAGAGCACTGGGTaGTCTTCCAAAGGTCCTGAGTTCAATTCCCAGCAATCACATGGT | + |
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Preference number: 1 (lower is better) Translates to: MNRGYRDGLAVKSTG*SSKGPEFNSQQSHG Trigger: ACCATGTGATTGCTGGGAATTGAACTCAGGACCTTTGGAAGAGCACCCAGTGCTCTTAACTGCTAAACCATCTCTATAGCCCCTGTTCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165219.8 |
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| 3UTR CCA 90 bp | CTCACAACCATCTGTGATGGGATCCCAGTCCCTGATGCACTCTTGTaGCATTCAAACATATGTGCAGACAGAGCACTCACACACAAAATA | + |
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Preference number: 1 (lower is better) Translates to: LTTICDGIPVPDALL*HSNICADRALTHKI Trigger: TATTTTGTGTGTGAGTGCTCTGTCTGCACATATGTTTGAATGCCACAAGAGTGCATCAGGGACTGGGATCCCATCACAGATGGTTGTGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165219.8 |
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| 3UTR TCA 72 bp | ATCCCAGCACTCGGGAGGCAGAGGCAGGCAGACTTCTaGGTTCGAGGCCATCCTAGTCTACAAAGTGAGTTC | + |
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Preference number: 3 (lower is better) Translates to: IPALGRQRQADF*VRGHPSLQSEF Trigger: GAACTCACTTTGTAGACTAGGATGGCCTCGAACTCAGAAGTCTGCCTGCCTCTGCCTCCCGAGTGCTGGGAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165219.8 |
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| 3UTR CCA 72 bp | AGTTCAGACAAGAAGCACCAAAATGGACAAGCATGGTaGCGCACGCCTTTGATCCCAGCACTCGGGAGGCAG | + |
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Preference number: 3 (lower is better) Translates to: SSDKKHQNGQAW*RTPLIPALGRQ Trigger: CTGCCTCCCGAGTGCTGGGATCAAAGGCGTGCGCCACCATGCTTGTCCATTTTGGTGCTTCTTGTCTGAACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165219.8 |
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| 3UTR CCA 72 bp | ATCTGTGATGGGATCCCAGTCCCTGATGCACTCTTGTaGCATTCAAACATATGTGCAGACAGAGCACTCACA | + |
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Preference number: 3 (lower is better) Translates to: ICDGIPVPDALL*HSNICADRALT Trigger: TGTGAGTGCTCTGTCTGCACATATGTTTGAATGCCACAAGAGTGCATCAGGGACTGGGATCCCATCACAGAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165219.8 |
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| 3UTR CCA 72 bp | CAGAGATACAAGAAAGTGGTAACAAGAAAACCCACATaGAAGCACATGTGGAAGACGTGGAATTTTCTAGGG | + |
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Preference number: 3 (lower is better) Translates to: QRYKKVVTRKPT*KHMWKTWNFLG Trigger: CCCTAGAAAATTCCACGTCTTCCACATGTGCTTCCATGTGGGTTTTCTTGTTACCACTTTCTTGTATCTCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
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| CDS-3UTR GCA 90 bp | TCCCAGCACTCGGGAGGCAGAGGCAGGCAGACTTCTGAGTTCGAGGCCATCCTATTCTGGTCAGCTCTGTaGCAAAGATCTCCGCCATGC | + |
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Preference number: 4 (lower is better) Translates to: SQHSGGRGRQTSEFEAILFWSAL*QRSPPC Trigger: GCATGGCGGAGATCTTTGGCACAGAGCTGACCAGAA...TAGGATGGCCTCGAACTCAGAAGTCTGCCTGCCTCTGCCTCCCGAGTGCTGGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165219.8 |
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| CDS-3UTR CCA 90 bp | TCCCAGCACTCGGGAGGCAGAGGCAGGCAGACTTCTGAGTTCGAGGCCATCCTAATGGACACAGAGCCCTaGCCTACATCTAACTCCACG | + |
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Preference number: 4 (lower is better) Translates to: SQHSGGRGRQTSEFEAILMDTEP*PTSNST Trigger: CGTGGAGTTAGATGTAGGCCAGGGCTCTGTGTCCAT...TAGGATGGCCTCGAACTCAGAAGTCTGCCTGCCTCTGCCTCCCGAGTGCTGGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165219.8 |
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| CDS-3UTR CCA 90 bp | TCCATTCCATCTGCCTTTGGTGATGACCAGAACTCTATGGCCCAGAAAGTGAGGTGTACAGGGCCCCCATaGTACCAGGGATGGACACAG | + |
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Preference number: 4 (lower is better) Translates to: SIPSAFGDDQNSMAQKVRCTGPP*YQGWTQ Trigger: CTGTGTCCATCCCTGGTACCATGGGGGCCCTGTACA...CCTCACTTTCTGGGCCATAGAGTTCTGGTCATCACCAAAGGCAGATGGAATGGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
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| CDS-3UTR CCA 90 bp | TGCTATAGTCCATTCCATCTGCCTTTGGTGATGACCAGAACTCTATGGCCCAGACCCGCCGGAAGTCCTTaGAACGTTCTACCACACCCC | + |
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Preference number: 4 (lower is better) Translates to: CYSPFHLPLVMTRTLWPRPAGSP*NVLPHP Trigger: GGGGTGTGGTAGAACGTTCCAAGGACTTCCGGCGGG...TCTGGGCCATAGAGTTCTGGTCATCACCAAAGGCAGATGGAATGGACTATAGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
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| CDS-3UTR GCA 90 bp | TCCATTCCATCTGCCTTTGGTGATGACCAGAACTCTATGGCCCAGAAAGTGAGGTCTTCCTTTTCTGCCTaGCTCCGCATCTGCTCCAAG | + |
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Preference number: 4 (lower is better) Translates to: SIPSAFGDDQNSMAQKVRSSFSA*LRICSK Trigger: CTTGGAGCAGATGCGGAGGCAGGCAGAAAAGGAAGA...CCTCACTTTCTGGGCCATAGAGTTCTGGTCATCACCAAAGGCAGATGGAATGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
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| CDS-3UTR TCA 90 bp | GCCTTTGGTGATGACCAGAACTCTATGGCCCAGAAAGTGAGGCTTCTTGCAATTAACAGCCATGCCAAGTaGAAACAGCCACCTTGGCAC | + |
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Preference number: 4 (lower is better) Translates to: AFGDDQNSMAQKVRLLAINSHAK*KQPPWH Trigger: GTGCCAAGGTGGCTGTTTTCACTTGGCATGGCTGTT...AATTGCAAGAAGCCTCACTTTCTGGGCCATAGAGTTCTGGTCATCACCAAAGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
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| CDS-3UTR TCA 90 bp | TGCTATAGTCCATTCCATCTGCCTTTGGTGATGACCAGAACTCTATGGCCCAGAAACGCACTGCGTAGTTaGGTAGCAGTCGACACACAG | + |
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Preference number: 4 (lower is better) Translates to: CYSPFHLPLVMTRTLWPRNALRS*VAVDTQ Trigger: CTGTGTGTCGACTGCTACTCAACTACGCAGTGCGTT...TCTGGGCCATAGAGTTCTGGTCATCACCAAAGGCAGATGGAATGGACTATAGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
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| CDS-3UTR GCA 90 bp | TCCATTCCATCTGCCTTTGGTGATGACCAGAACTCTATGGCCCAGAAAGTGAGGCAAAGATCTCCGCCATaGCAGCCAACAACTCCAACT | + |
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Preference number: 4 (lower is better) Translates to: SIPSAFGDDQNSMAQKVRQRSPP*QPTTPT Trigger: AGTTGGAGTTGTTGGCTGGCATGGCGGAGATCTTTG...CCTCACTTTCTGGGCCATAGAGTTCTGGTCATCACCAAAGGCAGATGGAATGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
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| CDS-3UTR GCA 90 bp | GCCTTTGGTGATGACCAGAACTCTATGGCCCAGAAAGTGAGGCTTCTTGCAATTTTCTGGTCAGCTCTGTaGCAAAGATCTCCGCCATGC | + |
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Preference number: 4 (lower is better) Translates to: AFGDDQNSMAQKVRLLAIFWSAL*QRSPPC Trigger: GCATGGCGGAGATCTTTGGCACAGAGCTGACCAGAA...AATTGCAAGAAGCCTCACTTTCTGGGCCATAGAGTTCTGGTCATCACCAAAGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
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| CDS-3UTR GCA 90 bp | TCCATTCCATCTGCCTTTGGTGATGACCAGAACTCTATGGCCCAGAAAGTGAGGAAAGGTTCTCTTCTGTaGCCTCAGCAGTGCTCACAC | + |
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Preference number: 4 (lower is better) Translates to: SIPSAFGDDQNSMAQKVRKGSLL*PQQCSH Trigger: GTGTGAGCACTGCTGAGGGCACAGAAGAGAACCTTT...CCTCACTTTCTGGGCCATAGAGTTCTGGTCATCACCAAAGGCAGATGGAATGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
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| CDS-3UTR CCA 90 bp | GCCTTTGGTGATGACCAGAACTCTATGGCCCAGAAAGTGAGGCTTCTTGCAATTATGGACACAGAGCCCTaGCCTACATCTAACTCCACG | + |
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Preference number: 4 (lower is better) Translates to: AFGDDQNSMAQKVRLLAIMDTEP*PTSNST Trigger: CGTGGAGTTAGATGTAGGCCAGGGCTCTGTGTCCAT...AATTGCAAGAAGCCTCACTTTCTGGGCCATAGAGTTCTGGTCATCACCAAAGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
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| CDS-3UTR CCA 90 bp | TCCATTCCATCTGCCTTTGGTGATGACCAGAACTCTATGGCCCAGAAAGTGAGGCAAGAGGGGCCTGGATaGAGAAACCTTCTTCCACAT | + |
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Preference number: 4 (lower is better) Translates to: SIPSAFGDDQNSMAQKVRQEGPG*RNLLPH Trigger: ATGTGGAAGAAGGTTTCTCCATCCAGGCCCCTCTTG...CCTCACTTTCTGGGCCATAGAGTTCTGGTCATCACCAAAGGCAGATGGAATGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
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| CDS-3UTR CCA 90 bp | TCCATTCCATCTGCCTTTGGTGATGACCAGAACTCTATGGCCCAGAAAGTGAGGTGGTGCCAGGCGTGGTaGAGCCAAAATGATACACAA | + |
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Preference number: 4 (lower is better) Translates to: SIPSAFGDDQNSMAQKVRWCQAW*SQNDTQ Trigger: TTGTGTATCATTTTGGCTCCACCACGCCTGGCACCA...CCTCACTTTCTGGGCCATAGAGTTCTGGTCATCACCAAAGGCAGATGGAATGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
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| CDS-3UTR CCA 90 bp | TCCATTCCATCTGCCTTTGGTGATGACCAGAACTCTATGGCCCAGAAAGTGAGGTGTTGGTGCCAGGCGTaGTGGAGCCAAAATGATACA | + |
|
Preference number: 4 (lower is better) Translates to: SIPSAFGDDQNSMAQKVRCWCQA*WSQNDT Trigger: TGTATCATTTTGGCTCCACCACGCCTGGCACCAACA...CCTCACTTTCTGGGCCATAGAGTTCTGGTCATCACCAAAGGCAGATGGAATGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
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| 3UTR CAA 72 bp | ACCATCTGTGATGGGATCCCAGTCCCTGATGCACTCTaGTGGCATTCAAACATATGTGCAGACAGAGCACTC | + |
|
Preference number: 4 (lower is better) Translates to: TICDGIPVPDAL*WHSNICADRAL Trigger: GAGTGCTCTGTCTGCACATATGTTTGAATGCCACAAGAGTGCATCAGGGACTGGGATCCCATCACAGATGGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165219.8 |
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| CDS-3UTR TCA 90 bp | TTGGGCCTTGTCAGCTGCCTTAATAAGATTGCTATAGTCCATTCCATCTGCCTTGTGGTGGAGCCAAAATaGTACACAAGAGGGGCCTGG | + |
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Preference number: 4 (lower is better) Translates to: LGLVSCLNKIAIVHSICLVVEPK*YTRGAW Trigger: CCAGGCCCCTCTTGTGTATCATTTTGGCTCCACCAC...AAGGCAGATGGAATGGACTATAGCAATCTTATTAAGGCAGCTGACAAGGCCCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
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| CDS-3UTR TCA 90 bp | TCCATTCCATCTGCCTTTGGTGATGACCAGAACTCTATGGCCCAGAAAGTGAGGCTTCACACCTTTGGTTaGACACATCTGCTAAGCGAG | + |
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Preference number: 4 (lower is better) Translates to: SIPSAFGDDQNSMAQKVRLHTFG*THLLSE Trigger: CTCGCTTAGCAGATGTGTTCAACCAAAGGTGTGAAG...CCTCACTTTCTGGGCCATAGAGTTCTGGTCATCACCAAAGGCAGATGGAATGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
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| CDS-3UTR TCA 90 bp | AGCACTGGGTGCTCTTCCAAAGGTCCTGAGTTCAATTCCCAGCAATCACATGGTTTGTACAGTCGCTCTTaGTCCAGAACCACAACCACA | + |
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Preference number: 4 (lower is better) Translates to: STGCSSKGPEFNSQQSHGLYSRS*SRTTTT Trigger: TGTGGTTGTGGTTCTGGATCAAGAGCGACTGTACAA...ACCATGTGATTGCTGGGAATTGAACTCAGGACCTTTGGAAGAGCACCCAGTGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165219.8 |
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| CDS-3UTR CCA 90 bp | TGCTATAGTCCATTCCATCTGCCTTTGGTGATGACCAGAACTCTATGGCCCAGATACACAAGAGGGGCCTaGATGGAGAAACCTTCTTCC | + |
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Preference number: 4 (lower is better) Translates to: CYSPFHLPLVMTRTLWPRYTRGA*MEKPSS Trigger: GGAAGAAGGTTTCTCCATCCAGGCCCCTCTTGTGTA...TCTGGGCCATAGAGTTCTGGTCATCACCAAAGGCAGATGGAATGGACTATAGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
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| CDS-3UTR CCA 90 bp | GATTGGCTCACAAGTAATTTCTTAGTTTTCCCTTCCTCCCAGCACTTTAGCAATCCCGCCGGAAGTCCTTaGAACGTTCTACCACACCCC | + |
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Preference number: 4 (lower is better) Translates to: DWLTSNFLVFPSSQHFSNPAGSP*NVLPHP Trigger: GGGGTGTGGTAGAACGTTCCAAGGACTTCCGGCGGG...ATTGCTAAAGTGCTGGGAGGAAGGGAAAACTAAGAAATTACTTGTGAGCCAATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165219.8 |
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| CDS-3UTR TCA 90 bp | GCCTTTGGTGATGACCAGAACTCTATGGCCCAGAAAGTGAGGCTTCTTGCAATTTCTTATTGTAAAGCTTaGTGTTGGTGCCAGGCGTGG | + |
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Preference number: 4 (lower is better) Translates to: AFGDDQNSMAQKVRLLAISYCKA*CWCQAW Trigger: CCACGCCTGGCACCAACATCAAGCTTTACAATAAGA...AATTGCAAGAAGCCTCACTTTCTGGGCCATAGAGTTCTGGTCATCACCAAAGGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
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| CDS-3UTR TCA 90 bp | TGCTATAGTCCATTCCATCTGCCTTTGGTGATGACCAGAACTCTATGGCCCAGATCTTATTGTAAAGCTTaGTGTTGGTGCCAGGCGTGG | + |
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Preference number: 4 (lower is better) Translates to: CYSPFHLPLVMTRTLWPRSYCKA*CWCQAW Trigger: CCACGCCTGGCACCAACATCAAGCTTTACAATAAGA...TCTGGGCCATAGAGTTCTGGTCATCACCAAAGGCAGATGGAATGGACTATAGCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
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| CDS-3UTR TCA 90 bp | GCCTTTGGTGATGACCAGAACTCTATGGCCCAGAAAGTGAGGCTTCTTGCAATTTTGTACAGTCGCTCTTaGTCCAGAACCACAACCACA | + |
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Preference number: 4 (lower is better) Translates to: AFGDDQNSMAQKVRLLAILYSRS*SRTTTT Trigger: TGTGGTTGTGGTTCTGGATCAAGAGCGACTGTACAA...AATTGCAAGAAGCCTCACTTTCTGGGCCATAGAGTTCTGGTCATCACCAAAGGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
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| CDS-3UTR CCA 90 bp | TGCTATAGTCCATTCCATCTGCCTTTGGTGATGACCAGAACTCTATGGCCCAGACTCACACTCAGGAGATaGTGCACCATATCTCTACCA | + |
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Preference number: 4 (lower is better) Translates to: CYSPFHLPLVMTRTLWPRLTLRR*CTISLP Trigger: TGGTAGAGATATGGTGCACCATCTCCTGAGTGTGAG...TCTGGGCCATAGAGTTCTGGTCATCACCAAAGGCAGATGGAATGGACTATAGCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
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| CDS-3UTR GCA 90 bp | TTGGGCCTTGTCAGCTGCCTTAATAAGATTGCTATAGTCCATTCCATCTGCCTTCAAAGATCTCCGCCATaGCAGCCAACAACTCCAACT | + |
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Preference number: 4 (lower is better) Translates to: LGLVSCLNKIAIVHSICLQRSPP*QPTTPT Trigger: AGTTGGAGTTGTTGGCTGGCATGGCGGAGATCTTTG...AAGGCAGATGGAATGGACTATAGCAATCTTATTAAGGCAGCTGACAAGGCCCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
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| CDS-3UTR CCA 90 bp | TTGGGCCTTGTCAGCTGCCTTAATAAGATTGCTATAGTCCATTCCATCTGCCTTTGTTGGTGCCAGGCGTaGTGGAGCCAAAATGATACA | + |
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Preference number: 4 (lower is better) Translates to: LGLVSCLNKIAIVHSICLCWCQA*WSQNDT Trigger: TGTATCATTTTGGCTCCACCACGCCTGGCACCAACA...AAGGCAGATGGAATGGACTATAGCAATCTTATTAAGGCAGCTGACAAGGCCCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
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| CDS-3UTR CCA 90 bp | GCCTTTGGTGATGACCAGAACTCTATGGCCCAGAAAGTGAGGCTTCTTGCAATTAGGAATCTGGAATGGTaGGTGCTCCAACTTTGTAGA | + |
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Preference number: 4 (lower is better) Translates to: AFGDDQNSMAQKVRLLAIRNLEW*VLQLCR Trigger: TCTACAAAGTTGGAGCACCCACCATTCCAGATTCCT...AATTGCAAGAAGCCTCACTTTCTGGGCCATAGAGTTCTGGTCATCACCAAAGGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
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| CDS-3UTR CCA 90 bp | GCCTTTGGTGATGACCAGAACTCTATGGCCCAGAAAGTGAGGCTTCTTGCAATTAACAGGAATCTGGAATaGTGGGTGCTCCAACTTTGT | + |
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Preference number: 4 (lower is better) Translates to: AFGDDQNSMAQKVRLLAINRNLE*WVLQLC Trigger: ACAAAGTTGGAGCACCCACCATTCCAGATTCCTGTT...AATTGCAAGAAGCCTCACTTTCTGGGCCATAGAGTTCTGGTCATCACCAAAGGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
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| CDS-3UTR CCA 90 bp | TGCTATAGTCCATTCCATCTGCCTTTGGTGATGACCAGAACTCTATGGCCCAGAAACAGGAATCTGGAATaGTGGGTGCTCCAACTTTGT | + |
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Preference number: 4 (lower is better) Translates to: CYSPFHLPLVMTRTLWPRNRNLE*WVLQLC Trigger: ACAAAGTTGGAGCACCCACCATTCCAGATTCCTGTT...TCTGGGCCATAGAGTTCTGGTCATCACCAAAGGCAGATGGAATGGACTATAGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
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| CDS-3UTR TCA 90 bp | TCCATTCCATCTGCCTTTGGTGATGACCAGAACTCTATGGCCCAGAAAGTGAGGCACCAGCATCAAAAGTaGATTTCTTGTTTCTGGTCA | + |
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Preference number: 4 (lower is better) Translates to: SIPSAFGDDQNSMAQKVRHQHQK*ISCFWS Trigger: TGACCAGAAACAAGAAATTCACTTTTGATGCTGGTG...CCTCACTTTCTGGGCCATAGAGTTCTGGTCATCACCAAAGGCAGATGGAATGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
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| CDS-3UTR TCA 90 bp | CTTACTAAAGTTCAGACAAGAAGCACCAAAATGGACAAGCATGGTGGCGCACGCCACCAGCATCAAAAGTaGATTTCTTGTTTCTGGTCA | + |
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Preference number: 4 (lower is better) Translates to: LTKVQTRSTKMDKHGGARHQHQK*ISCFWS Trigger: TGACCAGAAACAAGAAATTCACTTTTGATGCTGGTG...GCGTGCGCCACCATGCTTGTCCATTTTGGTGCTTCTTGTCTGAACTTTAGTAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165219.8 |
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| CDS-3UTR GCA 90 bp | GCCTTTGGTGATGACCAGAACTCTATGGCCCAGAAAGTGAGGCTTCTTGCAATTATCTGGAATGGTGGGTaGTCCAACTTTGTAGATTTT | + |
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Preference number: 4 (lower is better) Translates to: AFGDDQNSMAQKVRLLAIIWNGG*SNFVDF Trigger: AAAATCTACAAAGTTGGAGCACCCACCATTCCAGAT...AATTGCAAGAAGCCTCACTTTCTGGGCCATAGAGTTCTGGTCATCACCAAAGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
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| CDS-3UTR CCA 90 bp | AGCACTGGGTGCTCTTCCAAAGGTCCTGAGTTCAATTCCCAGCAATCACATGGTTTCAAACTTAGTCGTTaGCTTCTTGTCATCATTGGA | + |
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Preference number: 4 (lower is better) Translates to: STGCSSKGPEFNSQQSHGFKLSR*LLVIIG Trigger: TCCAATGATGACAAGAAGCCAACGACTAAGTTTGAA...ACCATGTGATTGCTGGGAATTGAACTCAGGACCTTTGGAAGAGCACCCAGTGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165219.8 |
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| CDS-3UTR CCA 90 bp | TGCTATAGTCCATTCCATCTGCCTTTGGTGATGACCAGAACTCTATGGCCCAGATTCACTTCACACCTTTaGTTGAACACATCTGCTAAG | + |
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Preference number: 4 (lower is better) Translates to: CYSPFHLPLVMTRTLWPRFTSHL*LNTSAK Trigger: CTTAGCAGATGTGTTCAACCAAAGGTGTGAAGTGAA...TCTGGGCCATAGAGTTCTGGTCATCACCAAAGGCAGATGGAATGGACTATAGCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
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| CDS-3UTR CCA 90 bp | TTGGGCCTTGTCAGCTGCCTTAATAAGATTGCTATAGTCCATTCCATCTGCCTTAGGACAGTAAACACTTaGTGTTCCACATCCACACTG | + |
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Preference number: 4 (lower is better) Translates to: LGLVSCLNKIAIVHSICLRTVNT*CSTSTL Trigger: CAGTGTGGATGTGGAACACCAAGTGTTTACTGTCCT...AAGGCAGATGGAATGGACTATAGCAATCTTATTAAGGCAGCTGACAAGGCCCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
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| CDS-3UTR CCA 90 bp | GCCTTTGGTGATGACCAGAACTCTATGGCCCAGAAAGTGAGGCTTCTTGCAATTTTCAAACTTAGTCGTTaGCTTCTTGTCATCATTGGA | + |
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Preference number: 4 (lower is better) Translates to: AFGDDQNSMAQKVRLLAIFKLSR*LLVIIG Trigger: TCCAATGATGACAAGAAGCCAACGACTAAGTTTGAA...AATTGCAAGAAGCCTCACTTTCTGGGCCATAGAGTTCTGGTCATCACCAAAGGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
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| CDS-3UTR CCA 90 bp | GATTGGCTCACAAGTAATTTCTTAGTTTTCCCTTCCTCCCAGCACTTTAGCAATCTCACACTCAGGAGATaGTGCACCATATCTCTACCA | + |
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Preference number: 4 (lower is better) Translates to: DWLTSNFLVFPSSQHFSNLTLRR*CTISLP Trigger: TGGTAGAGATATGGTGCACCATCTCCTGAGTGTGAG...ATTGCTAAAGTGCTGGGAGGAAGGGAAAACTAAGAAATTACTTGTGAGCCAATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165219.8 |
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| CDS-3UTR TCA 90 bp | TCAAGGAAATTAGGTATGATATCATCCCAAATTATCTCTAGCCTCTTATCTCTGAACAGCCATGCCAAGTaGAAACAGCCACCTTGGCAC | + |
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Preference number: 4 (lower is better) Translates to: SRKLGMISSQIISSLLSLNSHAK*KQPPWH Trigger: GTGCCAAGGTGGCTGTTTTCACTTGGCATGGCTGTT...CAGAGATAAGAGGCTAGAGATAATTTGGGATGATATCATACCTAATTTCCTTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165219.8 |
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| CDS-3UTR CCA 90 bp | CAAATTATCTCTAGCCTCTTATCTCTGAATACCCTAGGAACTAGAAACAGGTTTTGGTGCCAGGCGTGGTaGAGCCAAAATGATACACAA | + |
|
Preference number: 4 (lower is better) Translates to: QIISSLLSLNTLGTRNRFWCQAW*SQNDTQ Trigger: TTGTGTATCATTTTGGCTCCACCACGCCTGGCACCA...AAACCTGTTTCTAGTTCCTAGGGTATTCAGAGATAAGAGGCTAGAGATAATTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165219.8 |
||
| CDS-3UTR TCA 90 bp | CAAATTATCTCTAGCCTCTTATCTCTGAATACCCTAGGAACTAGAAACAGGTTTCTTCACACCTTTGGTTaGACACATCTGCTAAGCGAG | + |
|
Preference number: 4 (lower is better) Translates to: QIISSLLSLNTLGTRNRFLHTFG*THLLSE Trigger: CTCGCTTAGCAGATGTGTTCAACCAAAGGTGTGAAG...AAACCTGTTTCTAGTTCCTAGGGTATTCAGAGATAAGAGGCTAGAGATAATTTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165219.8 |
||
| CDS-3UTR CCA 90 bp | TCAAGGAAATTAGGTATGATATCATCCCAAATTATCTCTAGCCTCTTATCTCTGTACACAAGAGGGGCCTaGATGGAGAAACCTTCTTCC | + |
|
Preference number: 4 (lower is better) Translates to: SRKLGMISSQIISSLLSLYTRGA*MEKPSS Trigger: GGAAGAAGGTTTCTCCATCCAGGCCCCTCTTGTGTA...CAGAGATAAGAGGCTAGAGATAATTTGGGATGATATCATACCTAATTTCCTTGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165219.8 |
||
| CDS-3UTR CCA 90 bp | TCAAGGAAATTAGGTATGATATCATCCCAAATTATCTCTAGCCTCTTATCTCTGAGGAATCTGGAATGGTaGGTGCTCCAACTTTGTAGA | + |
|
Preference number: 4 (lower is better) Translates to: SRKLGMISSQIISSLLSLRNLEW*VLQLCR Trigger: TCTACAAAGTTGGAGCACCCACCATTCCAGATTCCT...CAGAGATAAGAGGCTAGAGATAATTTGGGATGATATCATACCTAATTTCCTTGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165219.8 |
||
| CDS-3UTR CCA 90 bp | TCAAGGAAATTAGGTATGATATCATCCCAAATTATCTCTAGCCTCTTATCTCTGAGGACAGTAAACACTTaGTGTTCCACATCCACACTG | + |
|
Preference number: 4 (lower is better) Translates to: SRKLGMISSQIISSLLSLRTVNT*CSTSTL Trigger: CAGTGTGGATGTGGAACACCAAGTGTTTACTGTCCT...CAGAGATAAGAGGCTAGAGATAATTTGGGATGATATCATACCTAATTTCCTTGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165219.8 |
||
| CDS-3UTR CCA 90 bp | CAAATTATCTCTAGCCTCTTATCTCTGAATACCCTAGGAACTAGAAACAGGTTTTTCACTTCACACCTTTaGTTGAACACATCTGCTAAG | + |
|
Preference number: 4 (lower is better) Translates to: QIISSLLSLNTLGTRNRFFTSHL*LNTSAK Trigger: CTTAGCAGATGTGTTCAACCAAAGGTGTGAAGTGAA...AAACCTGTTTCTAGTTCCTAGGGTATTCAGAGATAAGAGGCTAGAGATAATTTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000165219.8 |
||
| CDS-3UTR CAA 90 bp | TCCCAGCACTCGGGAGGCAGAGGCAGGCAGACTTCTGAGTTCGAGGCCATCCTATCCCGCCGGAAGTCCTaGGAACGTTCTACCACACCC | + |
|
Preference number: 5 (lower is better) Translates to: SQHSGGRGRQTSEFEAILSRRKS*ERSTTP Trigger: GGGTGTGGTAGAACGTTCCAAGGACTTCCGGCGGGA...TAGGATGGCCTCGAACTCAGAAGTCTGCCTGCCTCTGCCTCCCGAGTGCTGGGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165219.8 |
||
| CDS GCA 90 bp | CTCTTGATCCAGAACCACAACCACATCCACCTCAAAGGCCGACGCTaGGTGCACCAGGGCTTGGTAACCATAGCCCTTGACCCAGCCACA | + |
|
Preference number: 5 (lower is better) Translates to: LLIQNHNHIHLKGRR*VHQGLVTIALDPAT Trigger: TGTGGCTGGGTCAAGGGCTATGGTTACCAAGCCCTGGTGCACGCAGCGTCGGCCTTTGAGGTGGATGTGGTTGTGGTTCTGGATCAAGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
||
| CDS CCA 90 bp | AACCTTCTTCCACATCTGCTGGACGCTCAATGTACAGGGCCCCCATaGTACCAGGGATGGACACAGAGCCCTGGCCTACATCTAACTCCA | + |
|
Preference number: 5 (lower is better) Translates to: NLLPHLLDAQCTGPP*YQGWTQSPGLHLTP Trigger: TGGAGTTAGATGTAGGCCAGGGCTCTGTGTCCATCCCTGGTACCATGGGGGCCCTGTACATTGAGCGTCCAGCAGATGTGGAAGAAGGTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
||
| CDS CCA 90 bp | ATACACAAGAGGGGCCTGGATGGAGAAACCTTCTTCCACATCTGCTaGACGCTCAATGTACAGGGCCCCCATGGTACCAGGGATGGACAC | + |
|
Preference number: 5 (lower is better) Translates to: IHKRGLDGETFFHIC*TLNVQGPHGTRDGH Trigger: GTGTCCATCCCTGGTACCATGGGGGCCCTGTACATTGAGCGTCCAGCAGATGTGGAAGAAGGTTTCTCCATCCAGGCCCCTCTTGTGTAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
||
| CDS GCA 90 bp | ATGATACACAAGAGGGGCCTGGATGGAGAAACCTTCTTCCACATCTaGTGGACGCTCAATGTACAGGGCCCCCATGGTACCAGGGATGGA | + |
|
Preference number: 5 (lower is better) Translates to: MIHKRGLDGETFFHI*WTLNVQGPHGTRDG Trigger: TCCATCCCTGGTACCATGGGGGCCCTGTACATTGAGCGTCCAGCAGATGTGGAAGAAGGTTTCTCCATCCAGGCCCCTCTTGTGTATCAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
||
| CDS CCA 90 bp | TGCCAGGCGTGGTGGAGCCAAAATGATACACAAGAGGGGCCTGGATaGAGAAACCTTCTTCCACATCTGCTGGACGCTCAATGTACAGGG | + |
|
Preference number: 5 (lower is better) Translates to: CQAWWSQNDTQEGPG*RNLLPHLLDAQCTG Trigger: CCCTGTACATTGAGCGTCCAGCAGATGTGGAAGAAGGTTTCTCCATCCAGGCCCCTCTTGTGTATCATTTTGGCTCCACCACGCCTGGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
||
| CDS CCA 90 bp | GAAAGGTTCTCTTCTGTGCCCTCAGCAGTGCTCACACTCAGGAGATaGTGCACCATATCTCTACCAGGGGTGACAGGCACTAACTTGAGC | + |
|
Preference number: 5 (lower is better) Translates to: ERFSSVPSAVLTLRR*CTISLPGVTGTNLS Trigger: GCTCAAGTTAGTGCCTGTCACCCCTGGTAGAGATATGGTGCACCATCTCCTGAGTGTGAGCACTGCTGAGGGCACAGAAGAGAACCTTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
||
| CDS-3UTR CAA 90 bp | GCCTTTGGTGATGACCAGAACTCTATGGCCCAGAAAGTGAGGCTTCTTGCAATTTCCCGCCGGAAGTCCTaGGAACGTTCTACCACACCC | + |
|
Preference number: 5 (lower is better) Translates to: AFGDDQNSMAQKVRLLAISRRKS*ERSTTP Trigger: GGGTGTGGTAGAACGTTCCAAGGACTTCCGGCGGGA...AATTGCAAGAAGCCTCACTTTCTGGGCCATAGAGTTCTGGTCATCACCAAAGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
||
| CDS-3UTR CAA 90 bp | TCCATTCCATCTGCCTTTGGTGATGACCAGAACTCTATGGCCCAGAAAGTGAGGCGACACACAGTGGACTaGCCCACATCAGTAGGACCT | + |
|
Preference number: 5 (lower is better) Translates to: SIPSAFGDDQNSMAQKVRRHTVD*PTSVGP Trigger: AGGTCCTACTGATGTGGGCAAGTCCACTGTGTGTCG...CCTCACTTTCTGGGCCATAGAGTTCTGGTCATCACCAAAGGCAGATGGAATGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
||
| CDS TCA 90 bp | TCTCTACCAGGGGTGACAGGCACTAACTTGAGCTGGTTGTCTTCCTaGGACATACCCAGAGGTAAACAGGAATCTGGAATGGTGGGTGCT | + |
|
Preference number: 5 (lower is better) Translates to: SLPGVTGTNLSWLSS*DIPRGKQESGMVGA Trigger: AGCACCCACCATTCCAGATTCCTGTTTACCTCTGGGTATGTCTCAGGAAGACAACCAGCTCAAGTTAGTGCCTGTCACCCCTGGTAGAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
||
| CDS-3UTR CAA 90 bp | TGCTATAGTCCATTCCATCTGCCTTTGGTGATGACCAGAACTCTATGGCCCAGAACCCAGCCACAGGTGTaGATGACACAGCCACTCACA | + |
|
Preference number: 5 (lower is better) Translates to: CYSPFHLPLVMTRTLWPRTQPQV*MTQPLT Trigger: TGTGAGTGGCTGTGTCATCAACACCTGTGGCTGGGT...TCTGGGCCATAGAGTTCTGGTCATCACCAAAGGCAGATGGAATGGACTATAGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
||
| CDS-3UTR CAA 90 bp | GCCTTTGGTGATGACCAGAACTCTATGGCCCAGAAAGTGAGGCTTCTTGCAATTCTCCAACTGAACCGATaGAGAGGCCTCCACCTCAAA | + |
|
Preference number: 5 (lower is better) Translates to: AFGDDQNSMAQKVRLLAILQLNR*RGLHLK Trigger: TTTGAGGTGGAGGCCTCTCAATCGGTTCAGTTGGAG...AATTGCAAGAAGCCTCACTTTCTGGGCCATAGAGTTCTGGTCATCACCAAAGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
||
| CDS-3UTR CAA 90 bp | CTTACTAAAGTTCAGACAAGAAGCACCAAAATGGACAAGCATGGTGGCGCACGCCTCCAACTGAACCGATaGAGAGGCCTCCACCTCAAA | + |
|
Preference number: 5 (lower is better) Translates to: LTKVQTRSTKMDKHGGARLQLNR*RGLHLK Trigger: TTTGAGGTGGAGGCCTCTCAATCGGTTCAGTTGGAG...GCGTGCGCCACCATGCTTGTCCATTTTGGTGCTTCTTGTCTGAACTTTAGTAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165219.8 |
||
| CDS CCA 90 bp | AATACTCACGGATACGTTCATCTCTACATTCCCGCCGGAAGTCCTTaGAACGTTCTACCACACCCCCTGATTTTGGAAGCAACACAGTTC | + |
|
Preference number: 5 (lower is better) Translates to: NTHGYVHLYIPAGSP*NVLPHPLILEATQF Trigger: GAACTGTGTTGCTTCCAAAATCAGGGGGTGTGGTAGAACGTTCCAAGGACTTCCGGCGGGAATGTAGAGATGAACGTATCCGTGAGTATT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
||
| CDS-3UTR CAA 90 bp | TGCTATAGTCCATTCCATCTGCCTTTGGTGATGACCAGAACTCTATGGCCCAGAGTGAAAACAGCCACCTaGGCACCAGCATCAAAAGTG | + |
|
Preference number: 5 (lower is better) Translates to: CYSPFHLPLVMTRTLWPRVKTAT*APASKV Trigger: CACTTTTGATGCTGGTGCCAAGGTGGCTGTTTTCAC...TCTGGGCCATAGAGTTCTGGTCATCACCAAAGGCAGATGGAATGGACTATAGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
||
| CDS-3UTR CAA 90 bp | TGCTATAGTCCATTCCATCTGCCTTTGGTGATGACCAGAACTCTATGGCCCAGAGTTGTACAGTCGCTCTaGATCCAGAACCACAACCAC | + |
|
Preference number: 5 (lower is better) Translates to: CYSPFHLPLVMTRTLWPRVVQSL*IQNHNH Trigger: GTGGTTGTGGTTCTGGATCAAGAGCGACTGTACAAC...TCTGGGCCATAGAGTTCTGGTCATCACCAAAGGCAGATGGAATGGACTATAGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
||
| CDS-3UTR CAA 90 bp | TGCTATAGTCCATTCCATCTGCCTTTGGTGATGACCAGAACTCTATGGCCCAGAACTTCACACCTTTGGTaGAACACATCTGCTAAGCGA | + |
|
Preference number: 5 (lower is better) Translates to: CYSPFHLPLVMTRTLWPRTSHLW*NTSAKR Trigger: TCGCTTAGCAGATGTGTTCAACCAAAGGTGTGAAGT...TCTGGGCCATAGAGTTCTGGTCATCACCAAAGGCAGATGGAATGGACTATAGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
||
| CDS-3UTR CAA 90 bp | TTGGGCCTTGTCAGCTGCCTTAATAAGATTGCTATAGTCCATTCCATCTGCCTTCCACACCCCCTGATTTaGGAAGCAACACAGTTCGAA | + |
|
Preference number: 5 (lower is better) Translates to: LGLVSCLNKIAIVHSICLPHPLI*EATQFE Trigger: TTCGAACTGTGTTGCTTCCAAAATCAGGGGGTGTGG...AAGGCAGATGGAATGGACTATAGCAATCTTATTAAGGCAGCTGACAAGGCCCAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
||
| CDS-3UTR CAA 90 bp | TGCTATAGTCCATTCCATCTGCCTTTGGTGATGACCAGAACTCTATGGCCCAGATTCACATCAGAAAATTaGACGTTGAAGGCATGGGGA | + |
|
Preference number: 5 (lower is better) Translates to: CYSPFHLPLVMTRTLWPRFTSEN*TLKAWG Trigger: TCCCCATGCCTTCAACGTCAAATTTTCTGATGTGAA...TCTGGGCCATAGAGTTCTGGTCATCACCAAAGGCAGATGGAATGGACTATAGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
||
| CDS-3UTR CAA 90 bp | GCCTTTGGTGATGACCAGAACTCTATGGCCCAGAAAGTGAGGCTTCTTGCAATTTTCACATCAGAAAATTaGACGTTGAAGGCATGGGGA | + |
|
Preference number: 5 (lower is better) Translates to: AFGDDQNSMAQKVRLLAIFTSEN*TLKAWG Trigger: TCCCCATGCCTTCAACGTCAAATTTTCTGATGTGAA...AATTGCAAGAAGCCTCACTTTCTGGGCCATAGAGTTCTGGTCATCACCAAAGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
||
| CDS-3UTR CAA 90 bp | TTGGGCCTTGTCAGCTGCCTTAATAAGATTGCTATAGTCCATTCCATCTGCCTTTTAGTCGTTGGCTTCTaGTCATCATTGGATTCCTCG | + |
|
Preference number: 5 (lower is better) Translates to: LGLVSCLNKIAIVHSICLLVVGF*SSLDSS Trigger: CGAGGAATCCAATGATGACAAGAAGCCAACGACTAA...AAGGCAGATGGAATGGACTATAGCAATCTTATTAAGGCAGCTGACAAGGCCCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
||
| CDS-3UTR CAA 90 bp | TTGGGCCTTGTCAGCTGCCTTAATAAGATTGCTATAGTCCATTCCATCTGCCTTACTTCACACCTTTGGTaGAACACATCTGCTAAGCGA | + |
|
Preference number: 5 (lower is better) Translates to: LGLVSCLNKIAIVHSICLTSHLW*NTSAKR Trigger: TCGCTTAGCAGATGTGTTCAACCAAAGGTGTGAAGT...AAGGCAGATGGAATGGACTATAGCAATCTTATTAAGGCAGCTGACAAGGCCCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
||
| CDS-3UTR CAA 90 bp | CAAATTATCTCTAGCCTCTTATCTCTGAATACCCTAGGAACTAGAAACAGGTTTACCCAGCCACAGGTGTaGATGACACAGCCACTCACA | + |
|
Preference number: 5 (lower is better) Translates to: QIISSLLSLNTLGTRNRFTQPQV*MTQPLT Trigger: TGTGAGTGGCTGTGTCATCAACACCTGTGGCTGGGT...AAACCTGTTTCTAGTTCCTAGGGTATTCAGAGATAAGAGGCTAGAGATAATTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165219.8 |
||
| CDS-3UTR CAA 90 bp | TCAAGGAAATTAGGTATGATATCATCCCAAATTATCTCTAGCCTCTTATCTCTGCGACACACAGTGGACTaGCCCACATCAGTAGGACCT | + |
|
Preference number: 5 (lower is better) Translates to: SRKLGMISSQIISSLLSLRHTVD*PTSVGP Trigger: AGGTCCTACTGATGTGGGCAAGTCCACTGTGTGTCG...CAGAGATAAGAGGCTAGAGATAATTTGGGATGATATCATACCTAATTTCCTTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165219.8 |
||
| CDS-3UTR CAA 90 bp | TCAAGGAAATTAGGTATGATATCATCCCAAATTATCTCTAGCCTCTTATCTCTGCCACACCCCCTGATTTaGGAAGCAACACAGTTCGAA | + |
|
Preference number: 5 (lower is better) Translates to: SRKLGMISSQIISSLLSLPHPLI*EATQFE Trigger: TTCGAACTGTGTTGCTTCCAAAATCAGGGGGTGTGG...CAGAGATAAGAGGCTAGAGATAATTTGGGATGATATCATACCTAATTTCCTTGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000165219.8 |
||
| CDS-3UTR CAA 90 bp | CCAGTAAGAACAAAATGTGATTGGCTCACAAGTAATTTCTTAGTTTTCCCTTCCTTAGTCGTTGGCTTCTaGTCATCATTGGATTCCTCG | + |
|
Preference number: 5 (lower is better) Translates to: PVRTKCDWLTSNFLVFPSLVVGF*SSLDSS Trigger: CGAGGAATCCAATGATGACAAGAAGCCAACGACTAA...GGAAGGGAAAACTAAGAAATTACTTGTGAGCCAATCACATTTTGTTCTTACTGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165219.8 |
||
| CDS CCA 72 bp | CCACATCTGCTGGACGCTCAATGTACAGGGCCCCCATaGTACCAGGGATGGACACAGAGCCCTGGCCTACAT | + |
|
Preference number: 6 (lower is better) Translates to: PHLLDAQCTGPP*YQGWTQSPGLH Trigger: ATGTAGGCCAGGGCTCTGTGTCCATCCCTGGTACCATGGGGGCCCTGTACATTGAGCGTCCAGCAGATGTGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
||
| CDS CAA 72 bp | ATCCACCTCAAAGGCCGACGCTGCGTGCACCAGGGCTaGGTAACCATAGCCCTTGACCCAGCCACAGGTGTT | + |
|
Preference number: 6 (lower is better) Translates to: IHLKGRRCVHQG*VTIALDPATGV Trigger: AACACCTGTGGCTGGGTCAAGGGCTATGGTTACCAAGCCCTGGTGCACGCAGCGTCGGCCTTTGAGGTGGAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
||
| CDS CAA 90 bp | CACAACCACATCCACCTCAAAGGCCGACGCTGCGTGCACCAGGGCTaGGTAACCATAGCCCTTGACCCAGCCACAGGTGTTGATGACACA | + |
|
Preference number: 6 (lower is better) Translates to: HNHIHLKGRRCVHQG*VTIALDPATGVDDT Trigger: TGTGTCATCAACACCTGTGGCTGGGTCAAGGGCTATGGTTACCAAGCCCTGGTGCACGCAGCGTCGGCCTTTGAGGTGGATGTGGTTGTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
||
| CDS GCA 72 bp | CAGAACCACAACCACATCCACCTCAAAGGCCGACGCTaGGTGCACCAGGGCTTGGTAACCATAGCCCTTGAC | + |
|
Preference number: 6 (lower is better) Translates to: QNHNHIHLKGRR*VHQGLVTIALD Trigger: GTCAAGGGCTATGGTTACCAAGCCCTGGTGCACGCAGCGTCGGCCTTTGAGGTGGATGTGGTTGTGGTTCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
||
| CDS CCA 72 bp | AGGGGCCTGGATGGAGAAACCTTCTTCCACATCTGCTaGACGCTCAATGTACAGGGCCCCCATGGTACCAGG | + |
|
Preference number: 6 (lower is better) Translates to: RGLDGETFFHIC*TLNVQGPHGTR Trigger: CCTGGTACCATGGGGGCCCTGTACATTGAGCGTCCAGCAGATGTGGAAGAAGGTTTCTCCATCCAGGCCCCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
||
| CDS GCA 72 bp | AAGAGGGGCCTGGATGGAGAAACCTTCTTCCACATCTaGTGGACGCTCAATGTACAGGGCCCCCATGGTACC | + |
|
Preference number: 6 (lower is better) Translates to: KRGLDGETFFHI*WTLNVQGPHGT Trigger: GGTACCATGGGGGCCCTGTACATTGAGCGTCCAGCAGATGTGGAAGAAGGTTTCTCCATCCAGGCCCCTCTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
||
| CDS CCA 72 bp | TCTTCTGTGCCCTCAGCAGTGCTCACACTCAGGAGATaGTGCACCATATCTCTACCAGGGGTGACAGGCACT | + |
|
Preference number: 6 (lower is better) Translates to: SSVPSAVLTLRR*CTISLPGVTGT Trigger: AGTGCCTGTCACCCCTGGTAGAGATATGGTGCACCATCTCCTGAGTGTGAGCACTGCTGAGGGCACAGAAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
||
| CDS GCA 72 bp | ATCCAGCCACACTGGTCTCAGAAAGGTTCTCTTCTGTaGCCTCAGCAGTGCTCACACTCAGGAGATGGTGCA | + |
|
Preference number: 6 (lower is better) Translates to: IQPHWSQKGSLL*PQQCSHSGDGA Trigger: TGCACCATCTCCTGAGTGTGAGCACTGCTGAGGGCACAGAAGAGAACCTTTCTGAGACCAGTGTGGCTGGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
||
| CDS GCA 72 bp | TGTTTCTGGTCAGCTCTGTGCCAAAGATCTCCGCCATaGCAGCCAACAACTCCAACTGAACCGATTGAGAGG | + |
|
Preference number: 6 (lower is better) Translates to: CFWSALCQRSPP*QPTTPTEPIER Trigger: CCTCTCAATCGGTTCAGTTGGAGTTGTTGGCTGGCATGGCGGAGATCTTTGGCACAGAGCTGACCAGAAACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
||
| CDS TCA 72 bp | GGCAGGTCCCTTTTCAATTCGTTGTACAGTCGCTCTTaGTCCAGAACCACAACCACATCCACCTCAAAGGCC | + |
|
Preference number: 6 (lower is better) Translates to: GRSLFNSLYSRS*SRTTTTSTSKA Trigger: GGCCTTTGAGGTGGATGTGGTTGTGGTTCTGGATCAAGAGCGACTGTACAACGAATTGAAAAGGGACCTGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
||
| CDS CAA 90 bp | AACAAAATGAGGCAGGTCCCTTTTCAATTCGTTGTACAGTCGCTCTaGATCCAGAACCACAACCACATCCACCTCAAAGGCCGACGCTGC | + |
|
Preference number: 6 (lower is better) Translates to: NKMRQVPFQFVVQSL*IQNHNHIHLKGRRC Trigger: GCAGCGTCGGCCTTTGAGGTGGATGTGGTTGTGGTTCTGGATCAAGAGCGACTGTACAACGAATTGAAAAGGGACCTGCCTCATTTTGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
||
| CDS TCA 72 bp | GGGGTGACAGGCACTAACTTGAGCTGGTTGTCTTCCTaGGACATACCCAGAGGTAAACAGGAATCTGGAATG | + |
|
Preference number: 6 (lower is better) Translates to: GVTGTNLSWLSS*DIPRGKQESGM Trigger: CATTCCAGATTCCTGTTTACCTCTGGGTATGTCTCAGGAAGACAACCAGCTCAAGTTAGTGCCTGTCACCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
||
| CDS CAA 72 bp | AGGCAGGTCCCTTTTCAATTCGTTGTACAGTCGCTCTaGATCCAGAACCACAACCACATCCACCTCAAAGGC | + |
|
Preference number: 6 (lower is better) Translates to: RQVPFQFVVQSL*IQNHNHIHLKG Trigger: GCCTTTGAGGTGGATGTGGTTGTGGTTCTGGATCAAGAGCGACTGTACAACGAATTGAAAAGGGACCTGCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
||
| CDS CAA 72 bp | GGAAGTCCTTGGAACGTTCTACCACACCCCCTGATTTaGGAAGCAACACAGTTCGAACAAAATGAGGCAGGT | + |
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Preference number: 6 (lower is better) Translates to: GSPWNVLPHPLI*EATQFEQNEAG Trigger: ACCTGCCTCATTTTGTTCGAACTGTGTTGCTTCCAAAATCAGGGGGTGTGGTAGAACGTTCCAAGGACTTCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
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| CDS CAA 90 bp | AAATACTCACGGATACGTTCATCTCTACATTCCCGCCGGAAGTCCTaGGAACGTTCTACCACACCCCCTGATTTTGGAAGCAACACAGTT | + |
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Preference number: 6 (lower is better) Translates to: KYSRIRSSLHSRRKS*ERSTTPPDFGSNTV Trigger: AACTGTGTTGCTTCCAAAATCAGGGGGTGTGGTAGAACGTTCCAAGGACTTCCGGCGGGAATGTAGAGATGAACGTATCCGTGAGTATTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
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| CDS CCA 72 bp | CCTGAGACATACCCAGAGGTAAACAGGAATCTGGAATaGTGGGTGCTCCAACTTTGTAGATTTTCACATCAG | + |
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Preference number: 6 (lower is better) Translates to: PETYPEVNRNLE*WVLQLCRFSHQ Trigger: CTGATGTGAAAATCTACAAAGTTGGAGCACCCACCATTCCAGATTCCTGTTTACCTCTGGGTATGTCTCAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
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| CDS CCA 72 bp | CCACTCACAGAAGCCCTTCTGTTCACTTCACACCTTTaGTTGAACACATCTGCTAAGCGAGATGTAATCTTA | + |
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Preference number: 6 (lower is better) Translates to: PLTEALLFTSHL*LNTSAKRDVIL Trigger: TAAGATTACATCTCGCTTAGCAGATGTGTTCAACCAAAGGTGTGAAGTGAACAGAAGGGCTTCTGTGAGTGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
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| CDS CAA 72 bp | CTCACAGAAGCCCTTCTGTTCACTTCACACCTTTGGTaGAACACATCTGCTAAGCGAGATGTAATCTTATTG | + |
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Preference number: 6 (lower is better) Translates to: LTEALLFTSHLW*NTSAKRDVILL Trigger: CAATAAGATTACATCTCGCTTAGCAGATGTGTTCAACCAAAGGTGTGAAGTGAACAGAAGGGCTTCTGTGAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028475.9 ENSMUST00000165219.8 |
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