RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CLOCK (Mus musculus)

Ensembl gene IDs: ENSMUSG00000029238

Ensembl transcript IDs: ENSMUST00000075159.5, ENSMUST00000202122.2, ENSMUST00000202651.4

Found 389 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TCAGGTTCACCCTCCATCACCATCGTGATGCACAATGGATCCCAATaGTCTGTCAGTGGGGAGTCACTAGAGGGTAGGGTAGTGACTGCC +
Preference number: 1 (lower is better)
Translates to: SGSPSITIVMHNGSQ*SVSGESLEGRVVTA
Trigger: GGCAGTCACTACCCTACCCTCTAGTGACTCCCCACTGACAGATCATTGGGATCCATTGTGCATCACGATGGTGATGGAGGGTGAACCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
3UTR GCA 90 bp TGCTACCCTGAGGATAGAGCTTGGGGAATGGTCTTGGTGCTCATGTaGAAGCAAGCCCACCTACCACAGTTGCTTTCCTCTCACAGTCTC +
Preference number: 1 (lower is better)
Translates to: CYPEDRAWGMVLVLM*KQAHLPQLLSSHSL
Trigger: GAGACTGTGAGAGGAAAGCAACTGTGGTAGGTGGGCTTGCTTGCACATGAGCACCAAGACCATTCCCCAAGCTCTATCCTCAGGGTAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
3UTR CCA 90 bp GAACACAGCACTCTAAATGCTACCCTGAGGATAGAGCTTGGGGAATaGTCTTGGTGCTCATGTGCAAGCAAGCCCACCTACCACAGTTGC +
Preference number: 1 (lower is better)
Translates to: EHSTLNATLRIELGE*SWCSCASKPTYHSC
Trigger: GCAACTGTGGTAGGTGGGCTTGCTTGCACATGAGCACCAAGACCATTCCCCAAGCTCTATCCTCAGGGTAGCATTTAGAGTGCTGTGTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
3UTR CCA 90 bp GACAGCAGAACACAGCACTCTAAATGCTACCCTGAGGATAGAGCTTaGGGAATGGTCTTGGTGCTCATGTGCAAGCAAGCCCACCTACCA +
Preference number: 1 (lower is better)
Translates to: DSRTQHSKCYPEDRA*GMVLVLMCKQAHLP
Trigger: TGGTAGGTGGGCTTGCTTGCACATGAGCACCAAGACCATTCCCCAAGCTCTATCCTCAGGGTAGCATTTAGAGTGCTGTGTTCTGCTGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
3UTR CCA 90 bp AGCACTCTAAATGCTACCCTGAGGATAGAGCTTGGGGAATGGTCTTaGTGCTCATGTGCAAGCAAGCCCACCTACCACAGTTGCTTTCCT +
Preference number: 1 (lower is better)
Translates to: STLNATLRIELGEWS*CSCASKPTYHSCFP
Trigger: AGGAAAGCAACTGTGGTAGGTGGGCTTGCTTGCACATGAGCACCAAGACCATTCCCCAAGCTCTATCCTCAGGGTAGCATTTAGAGTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
3UTR TCA 90 bp TCCCTACCGTCTCATCAAGGGACTGAACACTCAAGACCACCCTCGTaGAACTGTTCAACTTCTGACCGCATGCCAACTGAGCGATTCTTT +
Preference number: 1 (lower is better)
Translates to: SLPSHQGTEHSRPPS*NCSTSDRMPTERFF
Trigger: AAAGAATCGCTCAGTTGGCATGCGGTCAGAAGTTGAACAGTTTCACGAGGGTGGTCTTGAGTGTTCAGTCCCTTGATGAGACGGTAGGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR TCA 90 bp ATCACTATGAAAATGGCAAGTGCCGTTGTGCTGTTTCTTCACCACTaGGAAGTTCCAGTCAGCTCACACCTGGCTATGCACCCTCAGCAA +
Preference number: 1 (lower is better)
Translates to: ITMKMASAVVLFLHH*EVPVSSHLAMHPQQ
Trigger: TTGCTGAGGGTGCATAGCCAGGTGTGAGCTGACTGGAACTTCTCAGTGGTGAAGAAACAGCACAACGGCACTTGCCATTTTCATAGTGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
3UTR GCA 90 bp ATCCCTAAGCCATGTCTATGTGACAGCAGAACACAGCACTCTAAATaGTACCCTGAGGATAGAGCTTGGGGAATGGTCTTGGTGCTCATG +
Preference number: 1 (lower is better)
Translates to: IPKPCLCDSRTQHSK*YPEDRAWGMVLVLM
Trigger: CATGAGCACCAAGACCATTCCCCAAGCTCTATCCTCAGGGTAGCATTTAGAGTGCTGTGTTCTGCTGTCACATAGACATGGCTTAGGGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
3UTR CCA 90 bp GTGATGCAAAAAGATAAACGAGGCACAGCTCCGACTCCGAGGACATaGAATGGCCAAAGAGAAGAAGGCAATGTGGAAGGGAGAAAAGCA +
Preference number: 1 (lower is better)
Translates to: VMQKDKRGTAPTPRT*NGQREEGNVEGRKA
Trigger: TGCTTTTCTCCCTTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCGGAGCTGTGCCTCGTTTATCTTTTTGCATCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR TCA 90 bp GTTGTTCTAAGTGTGTGCTATTCCTCCCATAAGGATCCCCAGGCATaGGAGTCTGATCTCACCTGTCTCAGAAAGCAGCAGCACTATCTT +
Preference number: 1 (lower is better)
Translates to: VVLSVCYSSHKDPQA*ESDLTCLRKQQHYL
Trigger: AAGATAGTGCTGCTGCTTTCTGAGACAGGTGAGATCAGACTCTCATGCCTGGGGATCCTTATGGGAGGAATAGCACACACTTAGAACAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
3UTR CCA 90 bp AAAGAAACTGTCAGAATTGGCTGTGTCCCTATGACCATTTCCCACTaGCTGGTATTTAATGGACATCTGAAGCACTGGGCAGCACTTCCC +
Preference number: 1 (lower is better)
Translates to: KETVRIGCVPMTISH*LVFNGHLKHWAALP
Trigger: GGGAAGTGCTGCCCAGTGCTTCAGATGTCCATTAAATACCAGCCAGTGGGAAATGGTCATAGGGACACAGCCAATTCTGACAGTTTCTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR CCA 90 bp AAGAGTTACTTAGCTTTAGAGGAAGATGCAAACAGGAAACGATTTTaGGATCCCATTCCCAGCTGTGACGCTGTCAGGCAGCCCAAGAGA +
Preference number: 1 (lower is better)
Translates to: KSYLALEEDANRKRF*DPIPSCDAVRQPKR
Trigger: TCTCTTGGGCTGCCTGACAGCGTCACAGCTGGGAATGGGATCCCAAAATCGTTTCCTGTTTGCATCTTCCTCTAAAGCTAAGTAACTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR TCA 90 bp AAAATCCATTCCCAGCAGCACATTGTTACCTCACTGAACAAACTGTaGCATCACAGCCAAAGCACGGACAAAAAGACTTGTGCCCTGGAA +
Preference number: 1 (lower is better)
Translates to: KIHSQQHIVTSLNKL*HHSQSTDKKTCALE
Trigger: TTCCAGGGCACAAGTCTTTTTGTCCGTGCTTTGGCTGTGATGTCACAGTTTGTTCAGTGAGGTAACAATGTGCTGCTGGGAATGGATTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR GCA 90 bp GCCAAAGAGAAGAAGGCAATGTGGAAGGGAGAAAAGCAATGTGGGTaGTCGACTTACATTGATTTCGTCACGTGTGCACAAACTTGCATA +
Preference number: 1 (lower is better)
Translates to: AKEKKAMWKGEKQCG*STYIDFVTCAQTCI
Trigger: TATGCAAGTTTGTGCACACGTGACGAAATCAATGTAAGTCGAGCACCCACATTGCTTTTCTCCCTTCCACATTGCCTTCTTCTCTTTGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR CCA 90 bp TCATCACGGTTCCATCATTGTCTGAACAGGGAGAGGAGTTTGGGGTaGGGACTATTAACTACTGGACTATCTTCATGGCATTCTAAGCAA +
Preference number: 1 (lower is better)
Translates to: SSRFHHCLNRERSLG*GLLTTGLSSWHSKQ
Trigger: TTGCTTAGAATGCCATGAAGATAGTCCAGTAGTTAATAGTCCCCACCCCAAACTCCTCTCCCTGTTCAGACAATGATGGAACCGTGATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR CCA 90 bp GGCTACAGAAATGAACAGGCAAAAGATGAACTTTCTTCAGAATACTaGAGTCGTGTGGGGAGCAGACAAAGACAGTTTGCCATCCAAAGG +
Preference number: 1 (lower is better)
Translates to: GYRNEQAKDELSSEY*SRVGSRQRQFAIQR
Trigger: CCTTTGGATGGCAAACTGTCTTTGTCTGCTCCCCACACGACTCCAGTATTCTGAAGAAAGTTCATCTTTTGCCTGTTCATTTCTGTAGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR TCA 90 bp GTGTTCCTTGCAGCCTCTCCTAAGTCCTGTAAATACTTACTATTATaGTTGTCTCTTGGTTCAGCACCTCAGTGTTTGCTGGTGGTGTTG +
Preference number: 1 (lower is better)
Translates to: VFLAASPKSCKYLLL*LSLGSAPQCLLVVL
Trigger: CAACACCACCAGCAAACACTGAGGTGCTGAACCAAGAGACAATCATAATAGTAAGTATTTACAGGACTTAGGAGAGGCTGCAAGGAACAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
3UTR TCA 90 bp GGCAATGTGGAAGGGAGAAAAGCAATGTGGGTGCTCGACTTACATTaGTTTCGTCACGTGTGCACAAACTTGCATAAATGTGTATTCTCA +
Preference number: 1 (lower is better)
Translates to: GNVEGRKAMWVLDLH*FRHVCTNLHKCVFS
Trigger: TGAGAATACACATTTATGCAAGTTTGTGCACACGTGACGAAATCAATGTAAGTCGAGCACCCACATTGCTTTTCTCCCTTCCACATTGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR TCA 90 bp GACTGCTTCAGTGCTCCCAACTTCCAAGAGACTGCTTTAAGGCAATaGCCAACTACTATACAGCACACAGAATTCAAACACTTGCTAGTT +
Preference number: 1 (lower is better)
Translates to: DCFSAPNFQETALRQ*PTTIQHTEFKHLLV
Trigger: AACTAGCAAGTGTTTGAATTCTGTGTGCTGTATAGTAGTTGGTCATTGCCTTAAAGCAGTCTCTTGGAAGTTGGGAGCACTGAAGCAGTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
3UTR GCA 90 bp TGTTTCTTCACCACTGAGAAGTTCCAGTCAGCTCACACCTGGCTATaGACCCTCAGCAATATTAATATCCAGTGTTTACACTTTCCATTG +
Preference number: 1 (lower is better)
Translates to: CFFTTEKFQSAHTWL*TLSNINIQCLHFPL
Trigger: CAATGGAAAGTGTAAACACTGGATATTAATATTGCTGAGGGTGCATAGCCAGGTGTGAGCTGACTGGAACTTCTCAGTGGTGAAGAAACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
3UTR CCA 90 bp ATGAACAGGCAAAAGATGAACTTTCTTCAGAATACTGGAGTCGTGTaGGGAGCAGACAAAGACAGTTTGCCATCCAAAGGAACCAAGAAT +
Preference number: 1 (lower is better)
Translates to: MNRQKMNFLQNTGVV*GADKDSLPSKGTKN
Trigger: ATTCTTGGTTCCTTTGGATGGCAAACTGTCTTTGTCTGCTCCCCACACGACTCCAGTATTCTGAAGAAAGTTCATCTTTTGCCTGTTCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR TCA 90 bp CACTCAATCCAGACAAACTTAGAAGGTCTCTTTATGCAATCACTATaGAAATGGCAAGTGCCGTTGTGCTGTTTCTTCACCACTGAGAAG +
Preference number: 1 (lower is better)
Translates to: HSIQTNLEGLFMQSL*KWQVPLCCFFTTEK
Trigger: CTTCTCAGTGGTGAAGAAACAGCACAACGGCACTTGCCATTTTCATAGTGATTGCATAAAGAGACCTTCTAAGTTTGTCTGGATTGAGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
3UTR GCA 90 bp CAAAGGGGTAAACACCTGAAAGAGTGTAAGTCTCAATTCAATGTTTaGTTTAGGAGGGGAGGAATTCTCATCTGGAGATACACAGCCATA +
Preference number: 1 (lower is better)
Translates to: QRGKHLKECKSQFNV*FRRGGILIWRYTAI
Trigger: TATGGCTGTGTATCTCCAGATGAGAATTCCTCCCCTCCTAAAGCAAACATTGAATTGAGACTTACACTCTTTCAGGTGTTTACCCCTTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
3UTR CCA 90 bp TCTAAATACACAGCCATTTTATTTAGGAGACCCAGAGAACTGCTTTaGGAACAAGTGTTCCTTGCAGCCTCTCCTAAGTCCTGTAAATAC +
Preference number: 1 (lower is better)
Translates to: SKYTAILFRRPRELL*EQVFLAASPKSCKY
Trigger: GTATTTACAGGACTTAGGAGAGGCTGCAAGGAACACTTGTTCCCAAAGCAGTTCTCTGGGTCTCCTAAATAAAATGGCTGTGTATTTAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
3UTR TCA 90 bp CAGTTTGTACATGGTGTCAAACCTAATGAAATGCACTCATACCTGTaGGGGACAGATAATGCTTTCTGTATCAAAGTGGCTTTCTCTCCT +
Preference number: 1 (lower is better)
Translates to: QFVHGVKPNEMHSYL*GTDNAFCIKVAFSP
Trigger: AGGAGAGAAAGCCACTTTGATACAGAAAGCATTATCTGTCCCTCACAGGTATGAGTGCATTTCATTAGGTTTGACACCATGTACAAACTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR GCA 90 bp CAGGAACAGCACAGCAAGACCACACGGAACTTAAGAGAAATCTGGTaGATGTTTGTACAACTACCAACTGATTTAACAGAGTTTACAAAG +
Preference number: 1 (lower is better)
Translates to: QEQHSKTTRNLREIW*MFVQLPTDLTEFTK
Trigger: CTTTGTAAACTCTGTTAAATCAGTTGGTAGTTGTACAAACATGCACCAGATTTCTCTTAAGTTCCGTGTGGTCTTGCTGTGCTGTTCCTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
3UTR CCA 90 bp CTTCTTCAAAGGGTAACTTTGATAAACAAGTATATCCAATTGTACTaGACCCAATTACAACGGCAATATGCAGCTGGTAGCAAGAGTCTG +
Preference number: 1 (lower is better)
Translates to: LLQRVTLINKYIQLY*TQLQRQYAAGSKSL
Trigger: CAGACTCTTGCTACCAGCTGCATATTGCCGTTGTAATTGGGTCCAGTACAATTGGATATACTTGTTTATCAAAGTTACCCTTTGAAGAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
3UTR TCA 90 bp TTCTGGTATTCGTATGAATGTCAGCTAGAAGAACTCTGTGATATGTaGGTTACTGACTGGTATCTAGACACACTTCTTATGCAGAAGAGT +
Preference number: 1 (lower is better)
Translates to: FWYSYECQLEELCDM*VTDWYLDTLLMQKS
Trigger: ACTCTTCTGCATAAGAAGTGTGTCTAGATACCAGTCAGTAACTCACATATCACAGAGTTCTTCTAGCTGACATTCATACGAATACCAGAA
39% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR TCA 90 bp TATGATTGTCTCTTGGTTCAGCACCTCAGTGTTTGCTGGTGGTGTTaGTGGAATCTCAATAGTCTCCACAAACTATATATAGCTATAACT +
Preference number: 1 (lower is better)
Translates to: YDCLLVQHLSVCWWC*WNLNSLHKLYIAIT
Trigger: AGTTATAGCTATATATAGTTTGTGGAGACTATTGAGATTCCATCAACACCACCAGCAAACACTGAGGTGCTGAACCAAGAGACAATCATA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
3UTR GCA 90 bp AGAGAGGTTGTTATCAGTTTGTACATGGTGTCAAACCTAATGAAATaGACTCATACCTGTGAGGGACAGATAATGCTTTCTGTATCAAAG +
Preference number: 1 (lower is better)
Translates to: REVVISLYMVSNLMK*THTCEGQIMLSVSK
Trigger: CTTTGATACAGAAAGCATTATCTGTCCCTCACAGGTATGAGTGCATTTCATTAGGTTTGACACCATGTACAAACTGATAACAACCTCTCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR CCA 90 bp CATATTCCTAGACCTCTGAAAATAAACAGGCTCATTGGTCTCTTTTaGTGTCCACACAATAGGCAAGATAGGTTTACAATAGTGTTTAAA +
Preference number: 1 (lower is better)
Translates to: HIPRPLKINRLIGLF*CPHNRQDRFTIVFK
Trigger: TTTAAACACTATTGTAAACCTATCTTGCCTATTGTGTGGACACCAAAAGAGACCAATGAGCCTGTTTATTTTCAGAGGTCTAGGAATATG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
3UTR-3UTR CCA 90 bp GAAGATGCAAACAGGAAACGATTTTGGGATCCCATTCCCAGCTGTGACGCTGTCCTGAGCGATTCTTTCTaGCCATCCCCTTCCTCTCGC +
Preference number: 2 (lower is better)
Translates to: EDANRKRFWDPIPSCDAVLSDSF*PSPSSR
Trigger: GCGAGAGGAAGGGGATGGCCAGAAAGAATCGCTCAG...GACAGCGTCACAGCTGGGAATGGGATCCCAAAATCGTTTCCTGTTTGCATCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR-3UTR CCA 90 bp CCGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAAGGGAGAGCAAACCCCTGGCAGTaGTGTGCCCTCTGTAATATT +
Preference number: 2 (lower is better)
Translates to: PTPRTWNGQREEGNVEGRANPWQ*CALCNI
Trigger: AATATTACAGAGGGCACACCACTGCCAGGGGTTTGC...TCTCCCTTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR-3UTR TCA 90 bp GTGCTCATGTGCAAGCAAGCCCACCTACCACAGTTGCTTTCCTCTCACAGTCTCCAGGGAGATGAACTGTaGAGAACAGCAGGCATTACA +
Preference number: 2 (lower is better)
Translates to: VLMCKQAHLPQLLSSHSLQGDEL*RTAGIT
Trigger: TGTAATGCCTGCTGTTCTTCACAGTTCATCTCCCTG...GAGACTGTGAGAGGAAAGCAACTGTGGTAGGTGGGCTTGCTTGCACATGAGCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR-3UTR CCA 90 bp CCCCAAGTCACCCCATACAGAAGCAGTCCAGAGCAAGGTACCTGCAGGGCAATGCTTTCTGTATCAAAGTaGCTTTCTCTCCTCCATCCA +
Preference number: 2 (lower is better)
Translates to: PQVTPYRSSPEQGTCRAMLSVSK*LSLLHP
Trigger: TGGATGGAGGAGAGAAAGCCACTTTGATACAGAAAG...CATTGCCCTGCAGGTACCTTGCTCTGGACTGCTTCTGTATGGGGTGACTTGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR-3UTR CCA 90 bp GTGCTCATGTGCAAGCAAGCCCACCTACCACAGTTGCTTTCCTCTCACAGTCTCTCCGAGGACATGGAATaGCCAAAGAGAAGAAGGCAA +
Preference number: 2 (lower is better)
Translates to: VLMCKQAHLPQLLSSHSLSEDME*PKRRRQ
Trigger: TTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGA...GAGACTGTGAGAGGAAAGCAACTGTGGTAGGTGGGCTTGCTTGCACATGAGCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR CAA 90 bp GGCTTGAACAAGGCTCATCTCCCTCAACGTGATGCCCATATATGGTaGGACTGCTTCAGTGCTCCCAACTTCCAAGAGACTGCTTTAAGG +
Preference number: 2 (lower is better)
Translates to: GLNKAHLPQRDAHIW*DCFSAPNFQETALR
Trigger: CCTTAAAGCAGTCTCTTGGAAGTTGGGAGCACTGAAGCAGTCCAACCATATATGGGCATCACGTTGAGGGAGATGAGCCTTGTTCAAGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
3UTR-3UTR TCA 90 bp ACAGCTCCGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAATCACTGAACAAACTGTaGCATCACAGCCAAAGCACG +
Preference number: 2 (lower is better)
Translates to: TAPTPRTWNGQREEGNVESLNKL*HHSQST
Trigger: CGTGCTTTGGCTGTGATGTCACAGTTTGTTCAGTGA...TTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCGGAGCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR-3UTR TCA 90 bp CGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAAGGGAGAAGGTTATCTGCACTGCTaGAACCAGTTTAGCACCTCA +
Preference number: 2 (lower is better)
Translates to: RLRGHGMAKEKKAMWKGEGYLHC*NQFSTS
Trigger: TGAGGTGCTAAACTGGTTTCAGCAGTGCAGATAACC...TTCTCCCTTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR-3UTR CCA 90 bp AGGCAATGTGGAAGGGAGAAAAGCAATGTGGGTGCTCGACTTACATTGATTTCGCTGAGCGATTCTTTCTaGCCATCCCCTTCCTCTCGC +
Preference number: 2 (lower is better)
Translates to: RQCGREKSNVGARLTLISLSDSF*PSPSSR
Trigger: GCGAGAGGAAGGGGATGGCCAGAAAGAATCGCTCAG...CGAAATCAATGTAAGTCGAGCACCCACATTGCTTTTCTCCCTTCCACATTGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR-3UTR CCA 90 bp AGGCAATGTGGAAGGGAGAAAAGCAATGTGGGTGCTCGACTTACATTGATTTCGGGACATCTGAAGCACTaGGCAGCACTTCCCTACCGT +
Preference number: 2 (lower is better)
Translates to: RQCGREKSNVGARLTLISGHLKH*AALPYR
Trigger: ACGGTAGGGAAGTGCTGCCCAGTGCTTCAGATGTCC...CGAAATCAATGTAAGTCGAGCACCCACATTGCTTTTCTCCCTTCCACATTGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR-3UTR CCA 90 bp GTGCTCATGTGCAAGCAAGCCCACCTACCACAGTTGCTTTCCTCTCACAGTCTCAACAGGAAACGATTTTaGGATCCCATTCCCAGCTGT +
Preference number: 2 (lower is better)
Translates to: VLMCKQAHLPQLLSSHSLNRKRF*DPIPSC
Trigger: ACAGCTGGGAATGGGATCCCAAAATCGTTTCCTGTT...GAGACTGTGAGAGGAAAGCAACTGTGGTAGGTGGGCTTGCTTGCACATGAGCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR-3UTR TCA 90 bp TCATGTGCAAGCAAGCCCACCTACCACAGTTGCTTTCCTCTCACAGTCTCGTCTTATTTAATGGACATCTaGAGCACTGGGCAGCACTTC +
Preference number: 2 (lower is better)
Translates to: SCASKPTYHSCFPLTVSSYLMDI*STGQHF
Trigger: GAAGTGCTGCCCAGTGCTTCAGATGTCCATTAAATA...AGACGAGACTGTGAGAGGAAAGCAACTGTGGTAGGTGGGCTTGCTTGCACATGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR-3UTR TCA 90 bp AAGTGGCTTTCTCTCCTCCATCCAGACACAGAGACACTACAGCATCTGTACACAGGTTCCATCATTGTCTaGACAGGGAGAGGAGTTTGG +
Preference number: 2 (lower is better)
Translates to: KWLSLLHPDTETLQHLYTGSIIV*TGRGVW
Trigger: CCAAACTCCTCTCCCTGTTCAGACAATGATGGAACC...TGTGTACAGATGCTGTAGTGTCTCTGTGTCTGGATGGAGGAGAGAAAGCCACTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR-3UTR TCA 90 bp CGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAAGGGAGAAATGCACTCATACCTGTaGGGGACAGATAATGCTTTC +
Preference number: 2 (lower is better)
Translates to: RLRGHGMAKEKKAMWKGEMHSYL*GTDNAF
Trigger: GAAAGCATTATCTGTCCCTCACAGGTATGAGTGCAT...TTCTCCCTTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR-3UTR TCA 90 bp GCAAGCAAGCCCACCTACCACAGTTGCTTTCCTCTCACAGTCTCGTCTCTAAGGACATTGTTACCTCACTaGACAAACTGTGACATCACA +
Preference number: 2 (lower is better)
Translates to: ASKPTYHSCFPLTVSSLRTLLPH*TNCDIT
Trigger: TGTGATGTCACAGTTTGTTCAGTGAGGTAACAATGT...CCTTAGAGACGAGACTGTGAGAGGAAAGCAACTGTGGTAGGTGGGCTTGCTTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR-3UTR CCA 90 bp GCAAGCAAGCCCACCTACCACAGTTGCTTTCCTCTCACAGTCTCGTCTCTAAGGATGACCATTTCCCACTaGCTGGTATTTAATGGACAT +
Preference number: 2 (lower is better)
Translates to: ASKPTYHSCFPLTVSSLRMTISH*LVFNGH
Trigger: ATGTCCATTAAATACCAGCCAGTGGGAAATGGTCAT...CCTTAGAGACGAGACTGTGAGAGGAAAGCAACTGTGGTAGGTGGGCTTGCTTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR-3UTR CCA 90 bp CACAGCCATATCGTGCCCCTCTTTTGGAGCTGCAAGGGATGCGCTCTGCTTATTGGGACTATTAACTACTaGACTATCTTCATGGCATTC +
Preference number: 2 (lower is better)
Translates to: HSHIVPLFWSCKGCALLIGTINY*TIFMAF
Trigger: GAATGCCATGAAGATAGTCCAGTAGTTAATAGTCCC...AATAAGCAGAGCGCATCCCTTGCAGCTCCAAAAGAGGGGCACGATATGGCTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
3UTR-3UTR CCA 90 bp GCAAGCAAGCCCACCTACCACAGTTGCTTTCCTCTCACAGTCTCGTCTCTAAGGAAAAGACTTGTGCCCTaGAAAAGTAACGAGAACACT +
Preference number: 2 (lower is better)
Translates to: ASKPTYHSCFPLTVSSLRKRLVP*KSNENT
Trigger: AGTGTTCTCGTTACTTTTCCAGGGCACAAGTCTTTT...CCTTAGAGACGAGACTGTGAGAGGAAAGCAACTGTGGTAGGTGGGCTTGCTTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR-3UTR TCA 90 bp AACAAGTATATCCAATTGTACTGGACCCAATTACAACGGCAATATGCAGCTGGTCCCACTTTGGTCACGTaGGCAGGAAGGATCCTCACA +
Preference number: 2 (lower is better)
Translates to: NKYIQLYWTQLQRQYAAGPTLVT*AGRILT
Trigger: TGTGAGGATCCTTCCTGCTCACGTGACCAAAGTGGG...ACCAGCTGCATATTGCCGTTGTAATTGGGTCCAGTACAATTGGATATACTTGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
3UTR-3UTR CCA 90 bp AAACACCTGAAAGAGTGTAAGTCTCAATTCAATGTTTGCTTTAGGAGGGGAGGAGGACATCTGAAGCACTaGGCAGCACTTCCCTACCGT +
Preference number: 2 (lower is better)
Translates to: KHLKECKSQFNVCFRRGGGHLKH*AALPYR
Trigger: ACGGTAGGGAAGTGCTGCCCAGTGCTTCAGATGTCC...TCCTCCCCTCCTAAAGCAAACATTGAATTGAGACTTACACTCTTTCAGGTGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
3UTR-3UTR CCA 90 bp ACCATCACATACTTTCCTTTTAAGGTCAATTCTAATGTGCCACACTTATCCTCCCTGAGCGATTCTTTCTaGCCATCCCCTTCCTCTCGC +
Preference number: 2 (lower is better)
Translates to: TITYFPFKVNSNVPHLSSLSDSF*PSPSSR
Trigger: GCGAGAGGAAGGGGATGGCCAGAAAGAATCGCTCAG...GGAGGATAAGTGTGGCACATTAGAATTGACCTTAAAAGGAAAGTATGTGATGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR-3UTR TCA 90 bp CTACAGCATCTGTACACAGTGAATTCAAACCTGCACAACATTCTCAAAGTCATCGGTTCCATCATTGTCTaGACAGGGAGAGGAGTTTGG +
Preference number: 2 (lower is better)
Translates to: LQHLYTVNSNLHNILKVIGSIIV*TGRGVW
Trigger: CCAAACTCCTCTCCCTGTTCAGACAATGATGGAACC...GATGACTTTGAGAATGTTGTGCAGGTTTGAATTCACTGTGTACAGATGCTGTAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR-3UTR TCA 90 bp AATGATGCTCTTAAACTGTGGTATGTTGTTCTAAGTGTGTGCTATTCCTCCCATAAGGATCCCCAGGCATaGGAGTCTGATCTCACCTGT +
Preference number: 2 (lower is better)
Translates to: NDALKLWYVVLSVCYSSHKDPQA*ESDLTC
Trigger: ACAGGTGAGATCAGACTCTCATGCCTGGGGATCCTT...ATGGGAGGAATAGCACACACTTAGAACAACATACCACAGTTTAAGAGCATCATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
3UTR-3UTR GCA 90 bp AATGATGCTCTTAAACTGTGGTATGTTGTTCTAAGTGTGTGCTATTCCTCCCATCCCACCTACCACAGTTaGTTTCCTCTCACAGTCTCG +
Preference number: 2 (lower is better)
Translates to: NDALKLWYVVLSVCYSSHPTYHS*FPLTVS
Trigger: CGAGACTGTGAGAGGAAAGCAACTGTGGTAGGTGGG...ATGGGAGGAATAGCACACACTTAGAACAACATACCACAGTTTAAGAGCATCATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
3UTR-3UTR CCA 90 bp ACAGCTCCGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAAGAGCTTGTTAGCATTTaGCAATATACTCTTTCTATC +
Preference number: 2 (lower is better)
Translates to: TAPTPRTWNGQREEGNVEELVSI*QYTLSI
Trigger: GATAGAAAGAGTATATTGCCAAATGCTAACAAGCTC...TTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCGGAGCTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR-3UTR CCA 90 bp AACAAGTATATCCAATTGTACTGGACCCAATTACAACGGCAATATGCAGCTGGTGCAAACCCCTGGCAGTaGTGTGCCCTCTGTAATATT +
Preference number: 2 (lower is better)
Translates to: NKYIQLYWTQLQRQYAAGANPWQ*CALCNI
Trigger: AATATTACAGAGGGCACACCACTGCCAGGGGTTTGC...ACCAGCTGCATATTGCCGTTGTAATTGGGTCCAGTACAATTGGATATACTTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
3UTR-3UTR CCA 90 bp AGGCAATGTGGAAGGGAGAAAAGCAATGTGGGTGCTCGACTTACATTGATTTCGCTTTCTGTATCAAAGTaGCTTTCTCTCCTCCATCCA +
Preference number: 2 (lower is better)
Translates to: RQCGREKSNVGARLTLISLSVSK*LSLLHP
Trigger: TGGATGGAGGAGAGAAAGCCACTTTGATACAGAAAG...CGAAATCAATGTAAGTCGAGCACCCACATTGCTTTTCTCCCTTCCACATTGCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR-3UTR GCA 90 bp AATGATGCTCTTAAACTGTGGTATGTTGTTCTAAGTGTGTGCTATTCCTCCCATGTTGGACTGCTTCAGTaGTCCCAACTTCCAAGAGAC +
Preference number: 2 (lower is better)
Translates to: NDALKLWYVVLSVCYSSHVGLLQ*SQLPRD
Trigger: GTCTCTTGGAAGTTGGGAGCACTGAAGCAGTCCAAC...ATGGGAGGAATAGCACACACTTAGAACAACATACCACAGTTTAAGAGCATCATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
3UTR-3UTR CCA 90 bp AGGCAATGTGGAAGGGAGAAAAGCAATGTGGGTGCTCGACTTACATTGATTTCGATGACCATTTCCCACTaGCTGGTATTTAATGGACAT +
Preference number: 2 (lower is better)
Translates to: RQCGREKSNVGARLTLISMTISH*LVFNGH
Trigger: ATGTCCATTAAATACCAGCCAGTGGGAAATGGTCAT...CGAAATCAATGTAAGTCGAGCACCCACATTGCTTTTCTCCCTTCCACATTGCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR-3UTR CCA 90 bp GAAGATGCAAACAGGAAACGATTTTGGGATCCCATTCCCAGCTGTGACGCTGTCGAGCTTGTTAGCATTTaGCAATATACTCTTTCTATC +
Preference number: 2 (lower is better)
Translates to: EDANRKRFWDPIPSCDAVELVSI*QYTLSI
Trigger: GATAGAAAGAGTATATTGCCAAATGCTAACAAGCTC...GACAGCGTCACAGCTGGGAATGGGATCCCAAAATCGTTTCCTGTTTGCATCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR CAA 90 bp ACTGAACAAACTGTGACATCACAGCCAAAGCACGGACAAAAAGACTaGTGCCCTGGAAAAGTAACGAGAACACTACTGTGTTGTAAACAA +
Preference number: 2 (lower is better)
Translates to: TEQTVTSQPKHGQKD*CPGKVTRTLLCCKQ
Trigger: TTGTTTACAACACAGTAGTGTTCTCGTTACTTTTCCAGGGCACAAGTCTTTTTGTCCGTGCTTTGGCTGTGATGTCACAGTTTGTTCAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR-3UTR TCA 90 bp CTACAGCATCTGTACACAGTGAATTCAAACCTGCACAACATTCTCAAAGTCATCTATTTAATGGACATCTaGAGCACTGGGCAGCACTTC +
Preference number: 2 (lower is better)
Translates to: LQHLYTVNSNLHNILKVIYLMDI*STGQHF
Trigger: GAAGTGCTGCCCAGTGCTTCAGATGTCCATTAAATA...GATGACTTTGAGAATGTTGTGCAGGTTTGAATTCACTGTGTACAGATGCTGTAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR-3UTR TCA 90 bp AAACTACACATCTACAATCTCCTGACTCCACCACATTCAAAACAAAAGTCAGAGGGTTATCTGCACTGCTaGAACCAGTTTAGCACCTCA +
Preference number: 2 (lower is better)
Translates to: KLHIYNLLTPPHSKQKSEGYLHC*NQFSTS
Trigger: TGAGGTGCTAAACTGGTTTCAGCAGTGCAGATAACC...CTCTGACTTTTGTTTTGAATGTGGTGGAGTCAGGAGATTGTAGATGTGTAGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
3UTR-3UTR TCA 90 bp AATGATGCTCTTAAACTGTGGTATGTTGTTCTAAGTGTGTGCTATTCCTCCCATTATTTAATGGACATCTaGAGCACTGGGCAGCACTTC +
Preference number: 2 (lower is better)
Translates to: NDALKLWYVVLSVCYSSHYLMDI*STGQHF
Trigger: GAAGTGCTGCCCAGTGCTTCAGATGTCCATTAAATA...ATGGGAGGAATAGCACACACTTAGAACAACATACCACAGTTTAAGAGCATCATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
3UTR-3UTR TCA 90 bp AATAGATATTACTTTGCTAGCATTTCCCCAAATGGGCAACAGAGGCAACATGTGCTCAAATGGGAACGCTaGAATGACATGCCAACATTT +
Preference number: 2 (lower is better)
Translates to: NRYYFASISPNGQQRQHVLKWER*NDMPTF
Trigger: AAATGTTGGCATGTCATTTCAGCGTTCCCATTTGAG...CACATGTTGCCTCTGTTGCCCATTTGGGGAAATGCTAGCAAAGTAATATCTATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
3UTR-3UTR GCA 90 bp TTTGATAAACAAGTATATCCAATTGTACTGGACCCAATTACAACGGCAATATGCGGAGACCCAGAGAACTaGTTTGGGAACAAGTGTTCC +
Preference number: 2 (lower is better)
Translates to: FDKQVYPIVLDPITTAICGDPEN*FGNKCS
Trigger: GGAACACTTGTTCCCAAAGCAGTTCTCTGGGTCTCC...GCATATTGCCGTTGTAATTGGGTCCAGTACAATTGGATATACTTGTTTATCAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
3UTR-3UTR CCA 90 bp AATAGATATTACTTTGCTAGCATTTCCCCAAATGGGCAACAGAGGCAACATGTGCAGGACCACAAGTACTaGAAAGATGATAGGCTTGAA +
Preference number: 2 (lower is better)
Translates to: NRYYFASISPNGQQRQHVQDHKY*KDDRLE
Trigger: TTCAAGCCTATCATCTTTCCAGTACTTGTGGTCCTG...CACATGTTGCCTCTGTTGCCCATTTGGGGAAATGCTAGCAAAGTAATATCTATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
3UTR-3UTR TCA 90 bp TTTGATAAACAAGTATATCCAATTGTACTGGACCCAATTACAACGGCAATATGCCAGGGAGATGAACTGTaGAGAACAGCAGGCATTACA +
Preference number: 2 (lower is better)
Translates to: FDKQVYPIVLDPITTAICQGDEL*RTAGIT
Trigger: TGTAATGCCTGCTGTTCTTCACAGTTCATCTCCCTG...GCATATTGCCGTTGTAATTGGGTCCAGTACAATTGGATATACTTGTTTATCAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
3UTR-3UTR TCA 90 bp AACAAGTATATCCAATTGTACTGGACCCAATTACAACGGCAATATGCAGCTGGTTATAAAAAGTGCCCATaGATCAGAGAAGGCAACAAG +
Preference number: 2 (lower is better)
Translates to: NKYIQLYWTQLQRQYAAGYKKCP*IREGNK
Trigger: CTTGTTGCCTTCTCTGATTCATGGGCACTTTTTATA...ACCAGCTGCATATTGCCGTTGTAATTGGGTCCAGTACAATTGGATATACTTGTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
3UTR-3UTR CCA 90 bp AATGATGCTCTTAAACTGTGGTATGTTGTTCTAAGTGTGTGCTATTCCTCCCATCTTTCTGTATCAAAGTaGCTTTCTCTCCTCCATCCA +
Preference number: 2 (lower is better)
Translates to: NDALKLWYVVLSVCYSSHLSVSK*LSLLHP
Trigger: TGGATGGAGGAGAGAAAGCCACTTTGATACAGAAAG...ATGGGAGGAATAGCACACACTTAGAACAACATACCACAGTTTAAGAGCATCATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
3UTR-3UTR TCA 90 bp AACAAGTATATCCAATTGTACTGGACCCAATTACAACGGCAATATGCAGCTGGTACTGAAACCAGACAATaGATTCAAGATGGTGAGTTA +
Preference number: 2 (lower is better)
Translates to: NKYIQLYWTQLQRQYAAGTETRQ*IQDGEL
Trigger: TAACTCACCATCTTGAATTCATTGTCTGGTTTCAGT...ACCAGCTGCATATTGCCGTTGTAATTGGGTCCAGTACAATTGGATATACTTGTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
3UTR-3UTR TCA 90 bp TGCATTTTATTCAGTGCTGTATTTCCAAACATAGCTTATGAAAACCAGGGAACCACTGCTTTAAGGCAATaGCCAACTACTATACAGCAC +
Preference number: 2 (lower is better)
Translates to: CILFSAVFPNIAYENQGTTALRQ*PTTIQH
Trigger: GTGCTGTATAGTAGTTGGTCATTGCCTTAAAGCAGT...GGTTCCCTGGTTTTCATAAGCTATGTTTGGAAATACAGCACTGAATAAAATGCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
3UTR-3UTR CCA 90 bp ACCATCACATACTTTCCTTTTAAGGTCAATTCTAATGTGCCACACTTATCCTCCGGGACTATTAACTACTaGACTATCTTCATGGCATTC +
Preference number: 2 (lower is better)
Translates to: TITYFPFKVNSNVPHLSSGTINY*TIFMAF
Trigger: GAATGCCATGAAGATAGTCCAGTAGTTAATAGTCCC...GGAGGATAAGTGTGGCACATTAGAATTGACCTTAAAAGGAAAGTATGTGATGGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR CAA 90 bp TCTGGTACTAAGAACAGGACCACAAGTACTGGAAAGATGATAGGCTaGAACAACTTTTACACAAATGTCTACCAACAAACCTTTAATCAC +
Preference number: 2 (lower is better)
Translates to: SGTKNRTTSTGKMIG*NNFYTNVYQQTFNH
Trigger: GTGATTAAAGGTTTGTTGGTAGACATTTGTGTAAAAGTTGTTCAAGCCTATCATCTTTCCAGTACTTGTGGTCCTGTTCTTAGTACCAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
3UTR CAA 90 bp GTTTTACTTCTTCAAAGGGTAACTTTGATAAACAAGTATATCCAATaGTACTGGACCCAATTACAACGGCAATATGCAGCTGGTAGCAAG +
Preference number: 2 (lower is better)
Translates to: VLLLQRVTLINKYIQ*YWTQLQRQYAAGSK
Trigger: CTTGCTACCAGCTGCATATTGCCGTTGTAATTGGGTCCAGTACAATTGGATATACTTGTTTATCAAAGTTACCCTTTGAAGAAGTAAAAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
3UTR-3UTR TCA 90 bp TGCATTTTATTCAGTGCTGTATTTCCAAACATAGCTTATGAAAACCAGGGAACCTCCTTTGCATTTACTTaGGAAGCTCCTCTTAGAAGA +
Preference number: 2 (lower is better)
Translates to: CILFSAVFPNIAYENQGTSFAFT*EAPLRR
Trigger: TCTTCTAAGAGGAGCTTCTCAAGTAAATGCAAAGGA...GGTTCCCTGGTTTTCATAAGCTATGTTTGGAAATACAGCACTGAATAAAATGCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
3UTR-3UTR GCA 90 bp AAACTACACATCTACAATCTCCTGACTCCACCACATTCAAAACAAAAGTCAGAGTCAACTCTTTTCCTTTaGATTTACTTGAGAAGCTCC +
Preference number: 2 (lower is better)
Translates to: KLHIYNLLTPPHSKQKSESTLFL*IYLRSS
Trigger: GGAGCTTCTCAAGTAAATGCAAAGGAAAAGAGTTGA...CTCTGACTTTTGTTTTGAATGTGGTGGAGTCAGGAGATTGTAGATGTGTAGTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
3UTR-3UTR GCA 90 bp AAACACCTGAAAGAGTGTAAGTCTCAATTCAATGTTTGCTTTAGGAGGGGAGGATTAAGAGAAATCTGGTaGATGTTTGTACAACTACCA +
Preference number: 2 (lower is better)
Translates to: KHLKECKSQFNVCFRRGGLREIW*MFVQLP
Trigger: TGGTAGTTGTACAAACATGCACCAGATTTCTCTTAA...TCCTCCCCTCCTAAAGCAAACATTGAATTGAGACTTACACTCTTTCAGGTGTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
3UTR-3UTR CCA 90 bp TGCATTTTATTCAGTGCTGTATTTCCAAACATAGCTTATGAAAACCAGGGAACCAATAAACAGGCTCATTaGTCTCTTTTGGTGTCCACA +
Preference number: 2 (lower is better)
Translates to: CILFSAVFPNIAYENQGTNKQAH*SLLVST
Trigger: TGTGGACACCAAAAGAGACCAATGAGCCTGTTTATT...GGTTCCCTGGTTTTCATAAGCTATGTTTGGAAATACAGCACTGAATAAAATGCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
3UTR-3UTR GCA 90 bp TTTGATAAACAAGTATATCCAATTGTACTGGACCCAATTACAACGGCAATATGCTCTCAATTCAATGTTTaGTTTAGGAGGGGAGGAATT +
Preference number: 2 (lower is better)
Translates to: FDKQVYPIVLDPITTAICSQFNV*FRRGGI
Trigger: AATTCCTCCCCTCCTAAAGCAAACATTGAATTGAGA...GCATATTGCCGTTGTAATTGGGTCCAGTACAATTGGATATACTTGTTTATCAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
3UTR-3UTR CCA 90 bp TTTGATAAACAAGTATATCCAATTGTACTGGACCCAATTACAACGGCAATATGCGAGCTTGTTAGCATTTaGCAATATACTCTTTCTATC +
Preference number: 2 (lower is better)
Translates to: FDKQVYPIVLDPITTAICELVSI*QYTLSI
Trigger: GATAGAAAGAGTATATTGCCAAATGCTAACAAGCTC...GCATATTGCCGTTGTAATTGGGTCCAGTACAATTGGATATACTTGTTTATCAAA
34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
3UTR CCA 72 bp CAACTTCTGACCGCATGCCAACTGAGCGATTCTTTCTaGCCATCCCCTTCCTCTCGCATGTCAGAGAGGAAG +
Preference number: 3 (lower is better)
Translates to: QLLTACQLSDSF*PSPSSRMSERK
Trigger: CTTCCTCTCTGACATGCGAGAGGAAGGGGATGGCCAGAAAGAATCGCTCAGTTGGCATGCGGTCAGAAGTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR TCA 72 bp CCCTCCATCACCATCGTGATGCACAATGGATCCCAATaGTCTGTCAGTGGGGAGTCACTAGAGGGTAGGGTA +
Preference number: 3 (lower is better)
Translates to: PSITIVMHNGSQ*SVSGESLEGRV
Trigger: TACCCTACCCTCTAGTGACTCCCCACTGACAGATCATTGGGATCCATTGTGCATCACGATGGTGATGGAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
3UTR GCA 72 bp GAGGATAGAGCTTGGGGAATGGTCTTGGTGCTCATGTaGAAGCAAGCCCACCTACCACAGTTGCTTTCCTCT +
Preference number: 3 (lower is better)
Translates to: EDRAWGMVLVLM*KQAHLPQLLSS
Trigger: AGAGGAAAGCAACTGTGGTAGGTGGGCTTGCTTGCACATGAGCACCAAGACCATTCCCCAAGCTCTATCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
3UTR CCA 72 bp AATGCTACCCTGAGGATAGAGCTTGGGGAATGGTCTTaGTGCTCATGTGCAAGCAAGCCCACCTACCACAGT +
Preference number: 3 (lower is better)
Translates to: NATLRIELGEWS*CSCASKPTYHS
Trigger: ACTGTGGTAGGTGGGCTTGCTTGCACATGAGCACCAAGACCATTCCCCAAGCTCTATCCTCAGGGTAGCATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
3UTR-3UTR CAA 90 bp CGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAAGGGAGAAAACAGGGAGAGGAGTTaGGGGTGGGGACTATTAACT +
Preference number: 3 (lower is better)
Translates to: RLRGHGMAKEKKAMWKGENRERS*GWGLLT
Trigger: AGTTAATAGTCCCCACCCCAAACTCCTCTCCCTGTT...TTCTCCCTTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR-3UTR CAA 90 bp GTGCTCATGTGCAAGCAAGCCCACCTACCACAGTTGCTTTCCTCTCACAGTCTCGGGTTTCAGTCAGCTTaGGCTACAGAAATGAACAGG +
Preference number: 3 (lower is better)
Translates to: VLMCKQAHLPQLLSSHSLGFQSA*ATEMNR
Trigger: CCTGTTCATTTCTGTAGCCAAAGCTGACTGAAACCC...GAGACTGTGAGAGGAAAGCAACTGTGGTAGGTGGGCTTGCTTGCACATGAGCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR TCA 72 bp AGTGTGTGCTATTCCTCCCATAAGGATCCCCAGGCATaGGAGTCTGATCTCACCTGTCTCAGAAAGCAGCAG +
Preference number: 3 (lower is better)
Translates to: SVCYSSHKDPQA*ESDLTCLRKQQ
Trigger: CTGCTGCTTTCTGAGACAGGTGAGATCAGACTCTCATGCCTGGGGATCCTTATGGGAGGAATAGCACACACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
3UTR CCA 72 bp AAAGATAAACGAGGCACAGCTCCGACTCCGAGGACATaGAATGGCCAAAGAGAAGAAGGCAATGTGGAAGGG +
Preference number: 3 (lower is better)
Translates to: KDKRGTAPTPRT*NGQREEGNVEG
Trigger: CCCTTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCGGAGCTGTGCCTCGTTTATCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR CCA 72 bp AGGCTCATCTCCCTCAACGTGATGCCCATATATGGTTaGACTGCTTCAGTGCTCCCAACTTCCAAGAGACTG +
Preference number: 3 (lower is better)
Translates to: RLISLNVMPIYG*TASVLPTSKRL
Trigger: CAGTCTCTTGGAAGTTGGGAGCACTGAAGCAGTCCAACCATATATGGGCATCACGTTGAGGGAGATGAGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
3UTR TCA 72 bp TCTCATCAAGGGACTGAACACTCAAGACCACCCTCGTaGAACTGTTCAACTTCTGACCGCATGCCAACTGAG +
Preference number: 3 (lower is better)
Translates to: SHQGTEHSRPPS*NCSTSDRMPTE
Trigger: CTCAGTTGGCATGCGGTCAGAAGTTGAACAGTTTCACGAGGGTGGTCTTGAGTGTTCAGTCCCTTGATGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR CCA 72 bp CATCTGGAGATACACAGCCATATCGTGCCCCTCTTTTaGAGCTGCAAGGGATGCGCTCTGCTTATTCTTGTT +
Preference number: 3 (lower is better)
Translates to: HLEIHSHIVPLF*SCKGCALLILV
Trigger: AACAAGAATAAGCAGAGCGCATCCCTTGCAGCTCCAAAAGAGGGGCACGATATGGCTGTGTATCTCCAGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
3UTR TCA 72 bp TTTCTAAGGCTTGAACAAGGCTCATCTCCCTCAACGTaGTGCCCATATATGGTTGGACTGCTTCAGTGCTCC +
Preference number: 3 (lower is better)
Translates to: FLRLEQGSSPST*CPYMVGLLQCS
Trigger: GGAGCACTGAAGCAGTCCAACCATATATGGGCATCACGTTGAGGGAGATGAGCCTTGTTCAAGCCTTAGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
3UTR GCA 72 bp CATCTCCCTCAACGTGATGCCCATATATGGTTGGACTaGTTCAGTGCTCCCAACTTCCAAGAGACTGCTTTA +
Preference number: 3 (lower is better)
Translates to: HLPQRDAHIWLD*FSAPNFQETAL
Trigger: TAAAGCAGTCTCTTGGAAGTTGGGAGCACTGAAGCAGTCCAACCATATATGGGCATCACGTTGAGGGAGATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
3UTR CCA 72 bp TTAGCTTTAGAGGAAGATGCAAACAGGAAACGATTTTaGGATCCCATTCCCAGCTGTGACGCTGTCAGGCAG +
Preference number: 3 (lower is better)
Translates to: LALEEDANRKRF*DPIPSCDAVRQ
Trigger: CTGCCTGACAGCGTCACAGCTGGGAATGGGATCCCAAAATCGTTTCCTGTTTGCATCTTCCTCTAAAGCTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR-3UTR CAA 90 bp CCGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAAGGGAGAAAAATTAAAGACAACTaGTCCCTTGTCTCTGAGCAA +
Preference number: 3 (lower is better)
Translates to: PTPRTWNGQREEGNVEGRKIKDN*SLVSEQ
Trigger: TTGCTCAGAGACAAGGGACAAGTTGTCTTTAATTTT...TCTCCCTTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR-3UTR CAA 90 bp CGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAAGGGAGAACACGTGTGCACAAACTaGCATAAATGTGTATTCTCA +
Preference number: 3 (lower is better)
Translates to: RLRGHGMAKEKKAMWKGEHVCTN*HKCVFS
Trigger: TGAGAATACACATTTATGCAAGTTTGTGCACACGTG...TTCTCCCTTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR TCA 72 bp TACGTTAAAGCTGTGCATGTCATACAGCAGGAGGCCTaGGTGAAGGCATGCTGGTGTACCAGTTTTACTTCT +
Preference number: 3 (lower is better)
Translates to: YVKAVHVIQQEA*VKACWCTSFTS
Trigger: AGAAGTAAAACTGGTACACCAGCATGCCTTCACTCAGGCCTCCTGCTGTATGACATGCACAGCTTTAACGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
3UTR CCA 72 bp ACAGCCATTTTATTTAGGAGACCCAGAGAACTGCTTTaGGAACAAGTGTTCCTTGCAGCCTCTCCTAAGTCC +
Preference number: 3 (lower is better)
Translates to: TAILFRRPRELL*EQVFLAASPKS
Trigger: GGACTTAGGAGAGGCTGCAAGGAACACTTGTTCCCAAAGCAGTTCTCTGGGTCTCCTAAATAAAATGGCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
3UTR TCA 72 bp TGGGCAAAGAAACTGTCAGAATTGGCTGTGTCCCTATaGCCATTTCCCACTGGCTGGTATTTAATGGACATC +
Preference number: 3 (lower is better)
Translates to: WAKKLSELAVSL*PFPTGWYLMDI
Trigger: GATGTCCATTAAATACCAGCCAGTGGGAAATGGTCATAGGGACACAGCCAATTCTGACAGTTTCTTTGCCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR TCA 72 bp TCCCAGCAGCACATTGTTACCTCACTGAACAAACTGTaGCATCACAGCCAAAGCACGGACAAAAAGACTTGT +
Preference number: 3 (lower is better)
Translates to: SQQHIVTSLNKL*HHSQSTDKKTC
Trigger: ACAAGTCTTTTTGTCCGTGCTTTGGCTGTGATGTCACAGTTTGTTCAGTGAGGTAACAATGTGCTGCTGGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR TCA 72 bp TTAAAGCTGTGCATGTCATACAGCAGGAGGCCTGAGTaGAGGCATGCTGGTGTACCAGTTTTACTTCTTCAA +
Preference number: 3 (lower is better)
Translates to: LKLCMSYSRRPE*RHAGVPVLLLQ
Trigger: TTGAAGAAGTAAAACTGGTACACCAGCATGCCTTCACTCAGGCCTCCTGCTGTATGACATGCACAGCTTTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
3UTR GCA 72 bp GTGACATCACAGCCAAAGCACGGACAAAAAGACTTGTaGCCTGGAAAAGTAACGAGAACACTACTGTGTTGT +
Preference number: 3 (lower is better)
Translates to: VTSQPKHGQKDL*PGKVTRTLLCC
Trigger: ACAACACAGTAGTGTTCTCGTTACTTTTCCAGGGCACAAGTCTTTTTGTCCGTGCTTTGGCTGTGATGTCAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR GCA 72 bp AAGAAGGCAATGTGGAAGGGAGAAAAGCAATGTGGGTaGTCGACTTACATTGATTTCGTCACGTGTGCACAA +
Preference number: 3 (lower is better)
Translates to: KKAMWKGEKQCG*STYIDFVTCAQ
Trigger: TTGTGCACACGTGACGAAATCAATGTAAGTCGAGCACCCACATTGCTTTTCTCCCTTCCACATTGCCTTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR GCA 72 bp ATACTGGAGTCGTGTGGGGAGCAGACAAAGACAGTTTaGCATCCAAAGGAACCAAGAATTAAGGAGCTAAGA +
Preference number: 3 (lower is better)
Translates to: ILESCGEQTKTV*HPKEPRIKELR
Trigger: TCTTAGCTCCTTAATTCTTGGTTCCTTTGGATGGCAAACTGTCTTTGTCTGCTCCCCACACGACTCCAGTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR CCA 72 bp TTCTTCACCACTGAGAAGTTCCAGTCAGCTCACACCTaGCTATGCACCCTCAGCAATATTAATATCCAGTGT +
Preference number: 3 (lower is better)
Translates to: FFTTEKFQSAHT*LCTLSNINIQC
Trigger: ACACTGGATATTAATATTGCTGAGGGTGCATAGCCAGGTGTGAGCTGACTGGAACTTCTCAGTGGTGAAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
3UTR-3UTR CAA 90 bp GTGTCAAACCTAATGAAATGCACTCATACCTGTGAGGGACAGATAATGCTTTCTAACAGGGAGAGGAGTTaGGGGTGGGGACTATTAACT +
Preference number: 3 (lower is better)
Translates to: VSNLMKCTHTCEGQIMLSNRERS*GWGLLT
Trigger: AGTTAATAGTCCCCACCCCAAACTCCTCTCCCTGTT...AGAAAGCATTATCTGTCCCTCACAGGTATGAGTGCATTTCATTAGGTTTGACAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR CCA 72 bp AATGAACAGGCAAAAGATGAACTTTCTTCAGAATACTaGAGTCGTGTGGGGAGCAGACAAAGACAGTTTGCC +
Preference number: 3 (lower is better)
Translates to: NEQAKDELSSEY*SRVGSRQRQFA
Trigger: GGCAAACTGTCTTTGTCTGCTCCCCACACGACTCCAGTATTCTGAAGAAAGTTCATCTTTTGCCTGTTCATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR-3UTR CAA 90 bp AAACTACACATCTACAATCTCCTGACTCCACCACATTCAAAACAAAAGTCAGAGAACAGGGAGAGGAGTTaGGGGTGGGGACTATTAACT +
Preference number: 3 (lower is better)
Translates to: KLHIYNLLTPPHSKQKSENRERS*GWGLLT
Trigger: AGTTAATAGTCCCCACCCCAAACTCCTCTCCCTGTT...CTCTGACTTTTGTTTTGAATGTGGTGGAGTCAGGAGATTGTAGATGTGTAGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
3UTR TCA 72 bp CAGACAAACTTAGAAGGTCTCTTTATGCAATCACTATaGAAATGGCAAGTGCCGTTGTGCTGTTTCTTCACC +
Preference number: 3 (lower is better)
Translates to: QTNLEGLFMQSL*KWQVPLCCFFT
Trigger: GGTGAAGAAACAGCACAACGGCACTTGCCATTTTCATAGTGATTGCATAAAGAGACCTTCTAAGTTTGTCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
3UTR TCA 72 bp CTCTTGGTTCAGCACCTCAGTGTTTGCTGGTGGTGTTaGTGGAATCTCAATAGTCTCCACAAACTATATATA +
Preference number: 3 (lower is better)
Translates to: LLVQHLSVCWWC*WNLNSLHKLYI
Trigger: TATATATAGTTTGTGGAGACTATTGAGATTCCATCAACACCACCAGCAAACACTGAGGTGCTGAACCAAGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
3UTR GCA 72 bp CACAGCAAGACCACACGGAACTTAAGAGAAATCTGGTaGATGTTTGTACAACTACCAACTGATTTAACAGAG +
Preference number: 3 (lower is better)
Translates to: HSKTTRNLREIW*MFVQLPTDLTE
Trigger: CTCTGTTAAATCAGTTGGTAGTTGTACAAACATGCACCAGATTTCTCTTAAGTTCCGTGTGGTCTTGCTGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
3UTR-3UTR CAA 90 bp AACAAGTATATCCAATTGTACTGGACCCAATTACAACGGCAATATGCAGCTGGTCACGTGTGCACAAACTaGCATAAATGTGTATTCTCA +
Preference number: 3 (lower is better)
Translates to: NKYIQLYWTQLQRQYAAGHVCTN*HKCVFS
Trigger: TGAGAATACACATTTATGCAAGTTTGTGCACACGTG...ACCAGCTGCATATTGCCGTTGTAATTGGGTCCAGTACAATTGGATATACTTGTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
3UTR-3UTR CAA 90 bp AACAAGTATATCCAATTGTACTGGACCCAATTACAACGGCAATATGCAGCTGGTTGTTTACACTTTCCATaGTGGACTCTGGTACTAAGA +
Preference number: 3 (lower is better)
Translates to: NKYIQLYWTQLQRQYAAGCLHFP*WTLVLR
Trigger: TCTTAGTACCAGAGTCCACAATGGAAAGTGTAAACA...ACCAGCTGCATATTGCCGTTGTAATTGGGTCCAGTACAATTGGATATACTTGTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
3UTR TCA 72 bp TCGTATGAATGTCAGCTAGAAGAACTCTGTGATATGTaGGTTACTGACTGGTATCTAGACACACTTCTTATG +
Preference number: 3 (lower is better)
Translates to: SYECQLEELCDM*VTDWYLDTLLM
Trigger: CATAAGAAGTGTGTCTAGATACCAGTCAGTAACTCACATATCACAGAGTTCTTCTAGCTGACATTCATACGA
39% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR TCA 72 bp AATCATTCCCATAAACCTGCTACGGTTCACTGGACCTaGACATTTCTCAGAAATGTGTCGTTTATCATTTCA +
Preference number: 3 (lower is better)
Translates to: NHSHKPATVHWT*TFLRNVSFIIS
Trigger: TGAAATGATAAACGACACATTTCTGAGAAATGTTCAGGTCCAGTGAACCGTAGCAGGTTTATGGGAATGATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
3UTR TCA 72 bp CATTCAAAACAAAAGTCAGAGTTTATTTGGCTACCTTaGAATCATTCCCATAAACCTGCTACGGTTCACTGG +
Preference number: 3 (lower is better)
Translates to: HSKQKSEFIWLP*NHSHKPATVHW
Trigger: CCAGTGAACCGTAGCAGGTTTATGGGAATGATTTCAAGGTAGCCAAATAAACTCTGACTTTTGTTTTGAATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
3UTR GCA 72 bp TACAAGAGCAACTCAAATGGGAACGCTGAAATGACATaGCAACATTTCAGGGCACATTTAAAACACTCAATA +
Preference number: 3 (lower is better)
Translates to: YKSNSNGNAEMT*QHFRAHLKHSI
Trigger: TATTGAGTGTTTTAAATGTGCCCTGAAATGTTGGCATGTCATTTCAGCGTTCCCATTTGAGTTGCTCTTGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
3UTR-3UTR CAA 90 bp AAACTACACATCTACAATCTCCTGACTCCACCACATTCAAAACAAAAGTCAGAGAAAATTAAAGACAACTaGTCCCTTGTCTCTGAGCAA +
Preference number: 3 (lower is better)
Translates to: KLHIYNLLTPPHSKQKSEKIKDN*SLVSEQ
Trigger: TTGCTCAGAGACAAGGGACAAGTTGTCTTTAATTTT...CTCTGACTTTTGTTTTGAATGTGGTGGAGTCAGGAGATTGTAGATGTGTAGTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
3UTR TCA 72 bp GCAAAAATATTACAAGAGCAACTCAAATGGGAACGCTaGAATGACATGCCAACATTTCAGGGCACATTTAAA +
Preference number: 3 (lower is better)
Translates to: AKILQEQLKWER*NDMPTFQGTFK
Trigger: TTTAAATGTGCCCTGAAATGTTGGCATGTCATTTCAGCGTTCCCATTTGAGTTGCTCTTGTAATATTTTTGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
3UTR-3UTR CAA 90 bp TGCATTTTATTCAGTGCTGTATTTCCAAACATAGCTTATGAAAACCAGGGAACCACAGAATTCAAACACTaGCTAGTTAGCCTAGAGTTT +
Preference number: 3 (lower is better)
Translates to: CILFSAVFPNIAYENQGTTEFKH*LVSLEF
Trigger: AAACTCTAGGCTAACTAGCAAGTGTTTGAATTCTGT...GGTTCCCTGGTTTTCATAAGCTATGTTTGGAAATACAGCACTGAATAAAATGCA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
3UTR-3UTR CAA 90 bp AATCCAGACAAACTTAGAAGGTCTCTTTATGCAATCACTATGAAAATGGCAAGTTTGATATTTTCAATATaGAGGCTCTGGTTTAACGCC +
Preference number: 3 (lower is better)
Translates to: NPDKLRRSLYAITMKMASLIFSI*RLWFNA
Trigger: GGCGTTAAACCAGAGCCTCAATATTGAAAATATCAA...ACTTGCCATTTTCATAGTGATTGCATAAAGAGACCTTCTAAGTTTGTCTGGATT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
3UTR GCA 72 bp TCGACTTACATTGATTTCGTCACGTGTGCACAAACTTaGATAAATGTGTATTCTCACAACTATTTCTGGTAT +
Preference number: 3 (lower is better)
Translates to: STYIDFVTCAQT*INVYSHNYFWY
Trigger: ATACCAGAAATAGTTGTGAGAATACACATTTATGCAAGTTTGTGCACACGTGACGAAATCAATGTAAGTCGA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR GCA 72 bp ATGGTATATTTTGAATTTATGCCCCTCAGAGTTAGATaGCTCTTAAGTAATAAACCCAGTTTGTGTCTGACA +
Preference number: 3 (lower is better)
Translates to: MVYFEFMPLRVR*LLSNKPSLCLT
Trigger: TGTCAGACACAAACTGGGTTTATTACTTAAGAGGCATCTAACTCTGAGGGGCATAAATTCAAAATATACCAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
3UTR TCA 72 bp CTTCATATTTCTAGTTTTGGCAAAGGGGTAAACACCTaGAAGAGTGTAAGTCTCAATTCAATGTTTGCTTTA +
Preference number: 3 (lower is better)
Translates to: LHISSFGKGVNT*KSVSLNSMFAL
Trigger: TAAAGCAAACATTGAATTGAGACTTACACTCTTTCAGGTGTTTACCCCTTTGCCAAAACTAGAAATATGAAG
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp GCAGCTAGTGCTGACAACTGTTGCCCAGCATGCATCTCCGTGTGGACAGCAGCCAGCTGGCTGCTGAACTaGAGGAAGCTGCTGTTCCTG +
Preference number: 4 (lower is better)
Translates to: AASADNCCPACISVWTAASWLLN*RKLLFL
Trigger: CAGGAACAGCAGCTTCCTTCAGTTCAGCAGCCAGCT...GGCTGCTGTCCACACGGAGATGCATGCTGGGCAACAGTTGTCAGCACTAGCTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp GCAGCTAGTGCTGACAACTGTTGCCCAGCATGCATCTCCGTGTGGACAGCAGCCTGTGCTGGCCTGTGCTaGTATGTCCACTCTGAACCT +
Preference number: 4 (lower is better)
Translates to: AASADNCCPACISVWTAACAGLC*YVHSEP
Trigger: AGGTTCAGAGTGGACATATCAGCACAGGCCAGCACA...GGCTGCTGTCCACACGGAGATGCATGCTGGGCAACAGTTGTCAGCACTAGCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp CCCCAAGTCACCCCATACAGAAGCAGTCCAGAGCAAGGTACCTGCAGGGCAATGTGGGAGTTTATGGACTaGCTGCTGAAGGACGACCTC +
Preference number: 4 (lower is better)
Translates to: PQVTPYRSSPEQGTCRAMWEFMD*LLKDDL
Trigger: GAGGTCGTCCTTCAGCAGTCAGTCCATAAACTCCCA...CATTGCCCTGCAGGTACCTTGCTCTGGACTGCTTCTGTATGGGGTGACTTGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp CCCCAAGTCACCCCATACAGAAGCAGTCCAGAGCAAGGTACCTGCAGGGCAATGGGATCTTTGTCGGTGTaGAGGAAGGGTCTGAGACTG +
Preference number: 4 (lower is better)
Translates to: PQVTPYRSSPEQGTCRAMGSLSV*RKGLRL
Trigger: CAGTCTCAGACCCTTCCTCCACACCGACAAAGATCC...CATTGCCCTGCAGGTACCTTGCTCTGGACTGCTTCTGTATGGGGTGACTTGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp CGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAAGGGAGAATGTACAGTGGGGCTGTaGGAGTGCTCGGTGTCTGAC +
Preference number: 4 (lower is better)
Translates to: RLRGHGMAKEKKAMWKGECTVGL*ECSVSD
Trigger: GTCAGACACCGAGCACTCTCACAGCCCCACTGTACA...TTCTCCCTTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR GCA 90 bp GTGCTCATGTGCAAGCAAGCCCACCTACCACAGTTGCTTTCCTCTCACAGTCTCGACCATGCTCCCAGCTaGAGGCTGGGAAATCACCAT +
Preference number: 4 (lower is better)
Translates to: VLMCKQAHLPQLLSSHSLDHAPS*RLGNHH
Trigger: ATGGTGATTTCCCAGCCTGCAGCTGGGAGCATGGTC...GAGACTGTGAGAGGAAAGCAACTGTGGTAGGTGGGCTTGCTTGCACATGAGCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR GCA 90 bp TCATGTGCAAGCAAGCCCACCTACCACAGTTGCTTTCCTCTCACAGTCTCGTCTATGGAATCTGGACCATaGTCCCAGCTGCAGGCTGGG +
Preference number: 4 (lower is better)
Translates to: SCASKPTYHSCFPLTVSSMESGP*SQLQAG
Trigger: CCCAGCCTGCAGCTGGGAGCATGGTCCAGATTCCAT...AGACGAGACTGTGAGAGGAAAGCAACTGTGGTAGGTGGGCTTGCTTGCACATGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR GCA 90 bp GCAGCTAGTGCTGACAACTGTTGCCCAGCATGCATCTCCGTGTGGACAGCAGCCTGTTCCTGGGAACTCTaGTGTTGTTGTTGCTGTTGC +
Preference number: 4 (lower is better)
Translates to: AASADNCCPACISVWTAACSWEL*CCCCCC
Trigger: GCAACAGCAACAACAACAGCAGAGTTCCCAGGAACA...GGCTGCTGTCCACACGGAGATGCATGCTGGGCAACAGTTGTCAGCACTAGCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp TCTGACCGCATGCCAACTGAGCGATTCTTTCTGGCCATCCCCTTCCTCTCGCATCATCGTATTGTACAGTaGGGCTGTGAGAGTGCTCGG +
Preference number: 4 (lower is better)
Translates to: SDRMPTERFFLAIPFLSHHRIVQ*GCESAR
Trigger: CCGAGCACTCTCACAGCCCCACTGTACAATACGATG...ATGCGAGAGGAAGGGGATGGCCAGAAAGAATCGCTCAGTTGGCATGCGGTCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp TCTGACCGCATGCCAACTGAGCGATTCTTTCTGGCCATCCCCTTCCTCTCGCATCTGATATGTCCACTCTaGACCTGGTTAGCAGGGACA +
Preference number: 4 (lower is better)
Translates to: SDRMPTERFFLAIPFLSHLICPL*TWLAGT
Trigger: TGTCCCTGCTAACCAGGTTCAGAGTGGACATATCAG...ATGCGAGAGGAAGGGGATGGCCAGAAAGAATCGCTCAGTTGGCATGCGGTCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp CAAACCCCTGGCAGTGGTGTGCCCTCTGTAATATTTGATGCAGGCACAGACCCATGTGCTGGCCTGTGCTaGTATGTCCACTCTGAACCT +
Preference number: 4 (lower is better)
Translates to: QTPGSGVPSVIFDAGTDPCAGLC*YVHSEP
Trigger: AGGTTCAGAGTGGACATATCAGCACAGGCCAGCACA...TGGGTCTGTGCCTGCATCAAATATTACAGAGGGCACACCACTGCCAGGGGTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp TCTGACCGCATGCCAACTGAGCGATTCTTTCTGGCCATCCCCTTCCTCTCGCATGGAAGAGACGTCTGCTaGCTGTGTCCACTCATTACA +
Preference number: 4 (lower is better)
Translates to: SDRMPTERFFLAIPFLSHGRDVC*LCPLIT
Trigger: TGTAATGAGTGGACACAGTCAGCAGACGTCTCTTCC...ATGCGAGAGGAAGGGGATGGCCAGAAAGAATCGCTCAGTTGGCATGCGGTCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp GCAGCTAGTGCTGACAACTGTTGCCCAGCATGCATCTCCGTGTGGACAGCAGCCCTTATCTGTCTGTCCTaGGTGAACGTAGTGACTGTA +
Preference number: 4 (lower is better)
Translates to: AASADNCCPACISVWTAALICLS*VNVVTV
Trigger: TACAGTCACTACGTTCACTCAGGACAGACAGATAAG...GGCTGCTGTCCACACGGAGATGCATGCTGGGCAACAGTTGTCAGCACTAGCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp ACAGCTCCGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAATGGTACTTGGTACCATaGCGGCCCCACAAGCTACAG +
Preference number: 4 (lower is better)
Translates to: TAPTPRTWNGQREEGNVEWYLVP*RPHKLQ
Trigger: CTGTAGCTTGTGGGGCCGTCATGGTACCAAGTACCA...TTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCGGAGCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR GCA 90 bp ACAGCTCCGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAAGACCATGCTCCCAGCTaGAGGCTGGGAAATCACCAT +
Preference number: 4 (lower is better)
Translates to: TAPTPRTWNGQREEGNVEDHAPS*RLGNHH
Trigger: ATGGTGATTTCCCAGCCTGCAGCTGGGAGCATGGTC...TTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCGGAGCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR GCA 90 bp CAAACCCCTGGCAGTGGTGTGCCCTCTGTAATATTTGATGCAGGCACAGACCCACTCTGCTGTTGTTGTTaGTGTTGCTGTGGTGGCTGC +
Preference number: 4 (lower is better)
Translates to: QTPGSGVPSVIFDAGTDPLCCCC*CCCGGC
Trigger: GCAGCCACCACAGCAACAGCAACAACAACAGCAGAG...TGGGTCTGTGCCTGCATCAAATATTACAGAGGGCACACCACTGCCAGGGGTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR GCA 90 bp CCGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAAGGGAGACTCTGCTGTTGTTGTTaGTGTTGCTGTGGTGGCTGC +
Preference number: 4 (lower is better)
Translates to: PTPRTWNGQREEGNVEGRLCCCC*CCCGGC
Trigger: GCAGCCACCACAGCAACAGCAACAACAACAGCAGAG...TCTCCCTTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp CCGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAAGGGAGAGGATCTTTGTCGGTGTaGAGGAAGGGTCTGAGACTG +
Preference number: 4 (lower is better)
Translates to: PTPRTWNGQREEGNVEGRGSLSV*RKGLRL
Trigger: CAGTCTCAGACCCTTCCTCCACACCGACAAAGATCC...TCTCCCTTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp GCAAGCAAGCCCACCTACCACAGTTGCTTTCCTCTCACAGTCTCGTCTCTAAGGCATCGTATTGTACAGTaGGGCTGTGAGAGTGCTCGG +
Preference number: 4 (lower is better)
Translates to: ASKPTYHSCFPLTVSSLRHRIVQ*GCESAR
Trigger: CCGAGCACTCTCACAGCCCCACTGTACAATACGATG...CCTTAGAGACGAGACTGTGAGAGGAAAGCAACTGTGGTAGGTGGGCTTGCTTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp GTGCTCATGTGCAAGCAAGCCCACCTACCACAGTTGCTTTCCTCTCACAGTCTCCTCCCAGCTGCAGGCTaGGAAATCACCATCGTATTG +
Preference number: 4 (lower is better)
Translates to: VLMCKQAHLPQLLSSHSLLPAAG*EITIVL
Trigger: CAATACGATGGTGATTTCCCAGCCTGCAGCTGGGAG...GAGACTGTGAGAGGAAAGCAACTGTGGTAGGTGGGCTTGCTTGCACATGAGCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp CGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAAGGGAGAATGGGAGTTTATGGACTaGCTGCTGAAGGACGACCTC +
Preference number: 4 (lower is better)
Translates to: RLRGHGMAKEKKAMWKGEWEFMD*LLKDDL
Trigger: GAGGTCGTCCTTCAGCAGTCAGTCCATAAACTCCCA...TTCTCCCTTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp CCGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAAGGGAGAGGAAGAGACGTCTGCTaGCTGTGTCCACTCATTACA +
Preference number: 4 (lower is better)
Translates to: PTPRTWNGQREEGNVEGRGRDVC*LCPLIT
Trigger: TGTAATGAGTGGACACAGTCAGCAGACGTCTCTTCC...TCTCCCTTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp GAAGATGCAAACAGGAAACGATTTTGGGATCCCATTCCCAGCTGTGACGCTGTCAGCTGGCTGCTGAACTaGAGGAAGCTGCTGTTCCTG +
Preference number: 4 (lower is better)
Translates to: EDANRKRFWDPIPSCDAVSWLLN*RKLLFL
Trigger: CAGGAACAGCAGCTTCCTTCAGTTCAGCAGCCAGCT...GACAGCGTCACAGCTGGGAATGGGATCCCAAAATCGTTTCCTGTTTGCATCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR GCA 90 bp CCCCAAGTCACCCCATACAGAAGCAGTCCAGAGCAAGGTACCTGCAGGGCAATGTGTTGCTGTATCATGTaGTGGCCTGTGCTGATATGT +
Preference number: 4 (lower is better)
Translates to: PQVTPYRSSPEQGTCRAMCCCIM*WPVLIC
Trigger: ACATATCAGCACAGGCCAGCACATGATACAGCAACA...CATTGCCCTGCAGGTACCTTGCTCTGGACTGCTTCTGTATGGGGTGACTTGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR GCA 90 bp GCAAGCAAGCCCACCTACCACAGTTGCTTTCCTCTCACAGTCTCGTCTCTAAGGGCGAAGGAGGGAAAGTaGTCTGTTGTAGTGGAAAGG +
Preference number: 4 (lower is better)
Translates to: ASKPTYHSCFPLTVSSLRAKEGK*SVVVER
Trigger: CCTTTCCACTACAACAGAGCACTTTCCCTCCTTCGC...CCTTAGAGACGAGACTGTGAGAGGAAAGCAACTGTGGTAGGTGGGCTTGCTTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp GTGCTCATGTGCAAGCAAGCCCACCTACCACAGTTGCTTTCCTCTCACAGTCTCGGTGGATGGCTCCTTTaGGTCTATTGTTCCTCGAAG +
Preference number: 4 (lower is better)
Translates to: VLMCKQAHLPQLLSSHSLGGWLL*VYCSSK
Trigger: CTTCGAGGAACAATAGACCCAAAGGAGCCATCCACC...GAGACTGTGAGAGGAAAGCAACTGTGGTAGGTGGGCTTGCTTGCACATGAGCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp GCAAGCAAGCCCACCTACCACAGTTGCTTTCCTCTCACAGTCTCGTCTCTAAGGGGTGGATGGCTCCTTTaGGTCTATTGTTCCTCGAAG +
Preference number: 4 (lower is better)
Translates to: ASKPTYHSCFPLTVSSLRGGWLL*VYCSSK
Trigger: CTTCGAGGAACAATAGACCCAAAGGAGCCATCCACC...CCTTAGAGACGAGACTGTGAGAGGAAAGCAACTGTGGTAGGTGGGCTTGCTTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp CCCCAAGTCACCCCATACAGAAGCAGTCCAGAGCAAGGTACCTGCAGGGCAATGTCCACTGCTGGCCTTTaGTCAGGAATCTATAGTAAC +
Preference number: 4 (lower is better)
Translates to: PQVTPYRSSPEQGTCRAMSTAGL*SGIYSN
Trigger: GTTACTATAGATTCCTGACCAAAGGCCAGCAGTGGA...CATTGCCCTGCAGGTACCTTGCTCTGGACTGCTTCTGTATGGGGTGACTTGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp CAAACCCCTGGCAGTGGTGTGCCCTCTGTAATATTTGATGCAGGCACAGACCCAGGAGGCAGAAGGAGTTaGGCTGTGATCAAACCTTTC +
Preference number: 4 (lower is better)
Translates to: QTPGSGVPSVIFDAGTDPGGRRS*AVIKPF
Trigger: GAAAGGTTTGATCACAGCCCAACTCCTTCTGCCTCC...TGGGTCTGTGCCTGCATCAAATATTACAGAGGGCACACCACTGCCAGGGGTTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp CCGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAAGGGAGAGGAGGCAGAAGGAGTTaGGCTGTGATCAAACCTTTC +
Preference number: 4 (lower is better)
Translates to: PTPRTWNGQREEGNVEGRGGRRS*AVIKPF
Trigger: GAAAGGTTTGATCACAGCCCAACTCCTTCTGCCTCC...TCTCCCTTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp ACAGCTCCGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAAGGATCTTTGTCGGTGTaGAGGAAGGGTCTGAGACTG +
Preference number: 4 (lower is better)
Translates to: TAPTPRTWNGQREEGNVEGSLSV*RKGLRL
Trigger: CAGTCTCAGACCCTTCCTCCACACCGACAAAGATCC...TTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCGGAGCTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp TCTGACCGCATGCCAACTGAGCGATTCTTTCTGGCCATCCCCTTCCTCTCGCATCATCTTTTCATGAGCTaGCAAATGCTGTCTGGGAGG +
Preference number: 4 (lower is better)
Translates to: SDRMPTERFFLAIPFLSHHLFMS*QMLSGR
Trigger: CCTCCCAGACAGCATTTGCCAGCTCATGAAAAGATG...ATGCGAGAGGAAGGGGATGGCCAGAAAGAATCGCTCAGTTGGCATGCGGTCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp TCATGTGCAAGCAAGCCCACCTACCACAGTTGCTTTCCTCTCACAGTCTCGTCTCTCCCAGCTGCAGGCTaGGAAATCACCATCGTATTG +
Preference number: 4 (lower is better)
Translates to: SCASKPTYHSCFPLTVSSLPAAG*EITIVL
Trigger: CAATACGATGGTGATTTCCCAGCCTGCAGCTGGGAG...AGACGAGACTGTGAGAGGAAAGCAACTGTGGTAGGTGGGCTTGCTTGCACATGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp GCAGCTAGTGCTGACAACTGTTGCCCAGCATGCATCTCCGTGTGGACAGCAGCCGAGCAGTCACTAATTTaGTCACAAGTTGCTGACCTT +
Preference number: 4 (lower is better)
Translates to: AASADNCCPACISVWTAAEQSLI*SQVADL
Trigger: AAGGTCAGCAACTTGTGACCAAATTAGTGACTGCTC...GGCTGCTGTCCACACGGAGATGCATGCTGGGCAACAGTTGTCAGCACTAGCTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp GCAAGCAAGCCCACCTACCACAGTTGCTTTCCTCTCACAGTCTCGTCTCTAAGGGTCGAAGGATTCCCGTaGAGCAACCTAGATGTCTGT +
Preference number: 4 (lower is better)
Translates to: ASKPTYHSCFPLTVSSLRVEGFP*SNLDVC
Trigger: ACAGACATCTAGGTTGCTCCACGGGAATCCTTCGAC...CCTTAGAGACGAGACTGTGAGAGGAAAGCAACTGTGGTAGGTGGGCTTGCTTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp CCGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAAGGGAGAGTCGAAGGATTCCCGTaGAGCAACCTAGATGTCTGT +
Preference number: 4 (lower is better)
Translates to: PTPRTWNGQREEGNVEGRVEGFP*SNLDVC
Trigger: ACAGACATCTAGGTTGCTCCACGGGAATCCTTCGAC...TCTCCCTTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp GCAGCTAGTGCTGACAACTGTTGCCCAGCATGCATCTCCGTGTGGACAGCAGCCATTTCCTTGATGAACTaGGGTGTAGCTAATCTGACA +
Preference number: 4 (lower is better)
Translates to: AASADNCCPACISVWTAAISLMN*GVANLT
Trigger: TGTCAGATTAGCTACACCTCAGTTCATCAAGGAAAT...GGCTGCTGTCCACACGGAGATGCATGCTGGGCAACAGTTGTCAGCACTAGCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp TCATGTGCAAGCAAGCCCACCTACCACAGTTGCTTTCCTCTCACAGTCTCGTCTCTGATATGTCCACTCTaGACCTGGTTAGCAGGGACA +
Preference number: 4 (lower is better)
Translates to: SCASKPTYHSCFPLTVSSLICPL*TWLAGT
Trigger: TGTCCCTGCTAACCAGGTTCAGAGTGGACATATCAG...AGACGAGACTGTGAGAGGAAAGCAACTGTGGTAGGTGGGCTTGCTTGCACATGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp AGGCAATGTGGAAGGGAGAAAAGCAATGTGGGTGCTCGACTTACATTGATTTCGTGTACAGTGGGGCTGTaGGAGTGCTCGGTGTCTGAC +
Preference number: 4 (lower is better)
Translates to: RQCGREKSNVGARLTLISCTVGL*ECSVSD
Trigger: GTCAGACACCGAGCACTCTCACAGCCCCACTGTACA...CGAAATCAATGTAAGTCGAGCACCCACATTGCTTTTCTCCCTTCCACATTGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp TCTGACCGCATGCCAACTGAGCGATTCTTTCTGGCCATCCCCTTCCTCTCGCATCTTATCTGTCTGTCCTaGGTGAACGTAGTGACTGTA +
Preference number: 4 (lower is better)
Translates to: SDRMPTERFFLAIPFLSHLICLS*VNVVTV
Trigger: TACAGTCACTACGTTCACTCAGGACAGACAGATAAG...ATGCGAGAGGAAGGGGATGGCCAGAAAGAATCGCTCAGTTGGCATGCGGTCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR GCA 90 bp CCCCAAGTCACCCCATACAGAAGCAGTCCAGAGCAAGGTACCTGCAGGGCAATGATCAAACCTTTCCAGTaGTTCCTTGAGACTCACTGT +
Preference number: 4 (lower is better)
Translates to: PQVTPYRSSPEQGTCRAMIKPFQ*FLETHC
Trigger: ACAGTGAGTCTCAAGGAAGCACTGGAAAGGTTTGAT...CATTGCCCTGCAGGTACCTTGCTCTGGACTGCTTCTGTATGGGGTGACTTGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR GCA 90 bp CCGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAAGGGAGAATCATCCGTGTCCGCTaGTCTAGCTGGTCTTTTAGA +
Preference number: 4 (lower is better)
Translates to: PTPRTWNGQREEGNVEGRIIRVR*SSWSFR
Trigger: TCTAAAAGACCAGCTAGAGCAGCGGACACGGATGAT...TCTCCCTTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR GCA 90 bp CACAGCCATATCGTGCCCCTCTTTTGGAGCTGCAAGGGATGCGCTCTGCTTATTATCATCCGTGTCCGCTaGTCTAGCTGGTCTTTTAGA +
Preference number: 4 (lower is better)
Translates to: HSHIVPLFWSCKGCALLIIIRVR*SSWSFR
Trigger: TCTAAAAGACCAGCTAGAGCAGCGGACACGGATGAT...AATAAGCAGAGCGCATCCCTTGCAGCTCCAAAAGAGGGGCACGATATGGCTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
CDS-3UTR GCA 90 bp CAAACCCCTGGCAGTGGTGTGCCCTCTGTAATATTTGATGCAGGCACAGACCCATGCTGCTGCTGCTGCTaGTGTTGTGTTACCGATAAT +
Preference number: 4 (lower is better)
Translates to: QTPGSGVPSVIFDAGTDPCCCCC*CCVTDN
Trigger: ATTATCGGTAACACAACAGCAGCAGCAGCAGCAGCA...TGGGTCTGTGCCTGCATCAAATATTACAGAGGGCACACCACTGCCAGGGGTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR GCA 90 bp CAAACCCCTGGCAGTGGTGTGCCCTCTGTAATATTTGATGCAGGCACAGACCCATGTTCCTGGGAACTCTaGTGTTGTTGTTGCTGTTGC +
Preference number: 4 (lower is better)
Translates to: QTPGSGVPSVIFDAGTDPCSWEL*CCCCCC
Trigger: GCAACAGCAACAACAACAGCAGAGTTCCCAGGAACA...TGGGTCTGTGCCTGCATCAAATATTACAGAGGGCACACCACTGCCAGGGGTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp CCCCAAGTCACCCCATACAGAAGCAGTCCAGAGCAAGGTACCTGCAGGGCAATGCTTTTAGATGCTGCATaGCTCCTAACTGAGCTGAAA +
Preference number: 4 (lower is better)
Translates to: PQVTPYRSSPEQGTCRAMLLDAA*LLTELK
Trigger: TTTCAGCTCAGTTAGGAGCCATGCAGCATCTAAAAG...CATTGCCCTGCAGGTACCTTGCTCTGGACTGCTTCTGTATGGGGTGACTTGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp ACAGCTCCGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAAGTCCGCTGCTCTAGCTaGTCTTTTAGATGCTGCATG +
Preference number: 4 (lower is better)
Translates to: TAPTPRTWNGQREEGNVEVRCSS*SFRCCM
Trigger: CATGCAGCATCTAAAAGACCAGCTAGAGCAGCGGAC...TTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCGGAGCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp CCGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAAGGGAGATGCTGTATCATGTGCTaGCCTGTGCTGATATGTCCA +
Preference number: 4 (lower is better)
Translates to: PTPRTWNGQREEGNVEGRCCIMC*PVLICP
Trigger: TGGACATATCAGCACAGGCCAGCACATGATACAGCA...TCTCCCTTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp CCGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAAGGGAGACTGGGTACTGTTCTGTaGCATACTGGATGGAATCTG +
Preference number: 4 (lower is better)
Translates to: PTPRTWNGQREEGNVEGRLGTVL*HTGWNL
Trigger: CAGATTCCATCCAGTATGCCACAGAACAGTACCCAG...TCTCCCTTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp CACAGCCATATCGTGCCCCTCTTTTGGAGCTGCAAGGGATGCGCTCTGCTTATTCTGGGTACTGTTCTGTaGCATACTGGATGGAATCTG +
Preference number: 4 (lower is better)
Translates to: HSHIVPLFWSCKGCALLILGTVL*HTGWNL
Trigger: CAGATTCCATCCAGTATGCCACAGAACAGTACCCAG...AATAAGCAGAGCGCATCCCTTGCAGCTCCAAAAGAGGGGCACGATATGGCTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp CCCCAAGTCACCCCATACAGAAGCAGTCCAGAGCAAGGTACCTGCAGGGCAATGTATCTTATAAACCTCTaGATGTTCTCCCTCTGGGAT +
Preference number: 4 (lower is better)
Translates to: PQVTPYRSSPEQGTCRAMYLINL*MFSLWD
Trigger: ATCCCAGAGGGAGAACATTCAGAGGTTTATAAGATA...CATTGCCCTGCAGGTACCTTGCTCTGGACTGCTTCTGTATGGGGTGACTTGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp CCCCAAGTCACCCCATACAGAAGCAGTCCAGAGCAAGGTACCTGCAGGGCAATGATTTCCTTGATGAACTaGGGTGTAGCTAATCTGACA +
Preference number: 4 (lower is better)
Translates to: PQVTPYRSSPEQGTCRAMISLMN*GVANLT
Trigger: TGTCAGATTAGCTACACCTCAGTTCATCAAGGAAAT...CATTGCCCTGCAGGTACCTTGCTCTGGACTGCTTCTGTATGGGGTGACTTGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp ACAGCTCCGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAAGGTAAATTTGCAGCTTaGGACATCGCTGGCTGTGTT +
Preference number: 4 (lower is better)
Translates to: TAPTPRTWNGQREEGNVEGKFAA*DIAGCV
Trigger: AACACAGCCAGCGATGTCTCAAGCTGCAAATTTACC...TTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCGGAGCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp AGGCAATGTGGAAGGGAGAAAAGCAATGTGGGTGCTCGACTTACATTGATTTCGAGCTGGCTGCTGAACTaGAGGAAGCTGCTGTTCCTG +
Preference number: 4 (lower is better)
Translates to: RQCGREKSNVGARLTLISSWLLN*RKLLFL
Trigger: CAGGAACAGCAGCTTCCTTCAGTTCAGCAGCCAGCT...CGAAATCAATGTAAGTCGAGCACCCACATTGCTTTTCTCCCTTCCACATTGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR GCA 90 bp GCAAGCAAGCCCACCTACCACAGTTGCTTTCCTCTCACAGTCTCGTCTCTAAGGGAAGAGACTCTTCAATaGCAAGTTCTCGCCGTCTTT +
Preference number: 4 (lower is better)
Translates to: ASKPTYHSCFPLTVSSLREETLQ*QVLAVF
Trigger: AAAGACGGCGAGAACTTGGCATTGAAGAGTCTCTTC...CCTTAGAGACGAGACTGTGAGAGGAAAGCAACTGTGGTAGGTGGGCTTGCTTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR GCA 90 bp ACAGCTCCGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAAATCATCCGTGTCCGCTaGTCTAGCTGGTCTTTTAGA +
Preference number: 4 (lower is better)
Translates to: TAPTPRTWNGQREEGNVEIIRVR*SSWSFR
Trigger: TCTAAAAGACCAGCTAGAGCAGCGGACACGGATGAT...TTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCGGAGCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR GCA 90 bp GCAAGCAAGCCCACCTACCACAGTTGCTTTCCTCTCACAGTCTCGTCTCTAAGGTGTTGCTGTATCATGTaGTGGCCTGTGCTGATATGT +
Preference number: 4 (lower is better)
Translates to: ASKPTYHSCFPLTVSSLRCCCIM*WPVLIC
Trigger: ACATATCAGCACAGGCCAGCACATGATACAGCAACA...CCTTAGAGACGAGACTGTGAGAGGAAAGCAACTGTGGTAGGTGGGCTTGCTTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR GCA 90 bp TCTGACCGCATGCCAACTGAGCGATTCTTTCTGGCCATCCCCTTCCTCTCGCATCTTTGTAAAGTCTGTTaGTGTATCATGTGCTGGCCT +
Preference number: 4 (lower is better)
Translates to: SDRMPTERFFLAIPFLSHLCKVC*CIMCWP
Trigger: AGGCCAGCACATGATACAGCAACAGACTTTACAAAG...ATGCGAGAGGAAGGGGATGGCCAGAAAGAATCGCTCAGTTGGCATGCGGTCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR GCA 90 bp GAAGATGCAAACAGGAAACGATTTTGGGATCCCATTCCCAGCTGTGACGCTGTCGCGAAGGAGGGAAAGTaGTCTGTTGTAGTGGAAAGG +
Preference number: 4 (lower is better)
Translates to: EDANRKRFWDPIPSCDAVAKEGK*SVVVER
Trigger: CCTTTCCACTACAACAGAGCACTTTCCCTCCTTCGC...GACAGCGTCACAGCTGGGAATGGGATCCCAAAATCGTTTCCTGTTTGCATCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp CAAACCCCTGGCAGTGGTGTGCCCTCTGTAATATTTGATGCAGGCACAGACCCACATCTGACTGTGCAGTaGTCTCTTTATGTTTGCGCA +
Preference number: 4 (lower is better)
Translates to: QTPGSGVPSVIFDAGTDPHLTVQ*SLYVCA
Trigger: TGCGCAAACATAAAGAGACCACTGCACAGTCAGATG...TGGGTCTGTGCCTGCATCAAATATTACAGAGGGCACACCACTGCCAGGGGTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp CCGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAAGGGAGATCCACTGCTGGCCTTTaGTCAGGAATCTATAGTAAC +
Preference number: 4 (lower is better)
Translates to: PTPRTWNGQREEGNVEGRSTAGL*SGIYSN
Trigger: GTTACTATAGATTCCTGACCAAAGGCCAGCAGTGGA...TCTCCCTTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp CACAGCCATATCGTGCCCCTCTTTTGGAGCTGCAAGGGATGCGCTCTGCTTATTTTAGCAGGGACAACCTaGCCTTGCATATTTACAGGT +
Preference number: 4 (lower is better)
Translates to: HSHIVPLFWSCKGCALLILAGTT*PCIFTG
Trigger: ACCTGTAAATATGCAAGGCCAGGTTGTCCCTGCTAA...AATAAGCAGAGCGCATCCCTTGCAGCTCCAAAAGAGGGGCACGATATGGCTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp TCATGTGCAAGCAAGCCCACCTACCACAGTTGCTTTCCTCTCACAGTCTCGTCTTGTTCTGTGGCATACTaGATGGAATCTGGACCATGC +
Preference number: 4 (lower is better)
Translates to: SCASKPTYHSCFPLTVSSCSVAY*MESGPC
Trigger: GCATGGTCCAGATTCCATCCAGTATGCCACAGAACA...AGACGAGACTGTGAGAGGAAAGCAACTGTGGTAGGTGGGCTTGCTTGCACATGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp GAAGATGCAAACAGGAAACGATTTTGGGATCCCATTCCCAGCTGTGACGCTGTCGGAAGCTGCTGTTCCTaGGAACTCTGCTGTTGTTGT +
Preference number: 4 (lower is better)
Translates to: EDANRKRFWDPIPSCDAVGSCCS*ELCCCC
Trigger: ACAACAACAGCAGAGTTCCCAGGAACAGCAGCTTCC...GACAGCGTCACAGCTGGGAATGGGATCCCAAAATCGTTTCCTGTTTGCATCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp CCCCAAGTCACCCCATACAGAAGCAGTCCAGAGCAAGGTACCTGCAGGGCAATGATCTCTGTCAACAATTaGGCTCATTTTACTACAGCT +
Preference number: 4 (lower is better)
Translates to: PQVTPYRSSPEQGTCRAMISVNN*AHFTTA
Trigger: AGCTGTAGTAAAATGAGCTCAATTGTTGACAGAGAT...CATTGCCCTGCAGGTACCTTGCTCTGGACTGCTTCTGTATGGGGTGACTTGGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp CGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAAGGGAGAAAATCTCACTAGCATCTaGCTGTGCAGTGGTCTCTTT +
Preference number: 4 (lower is better)
Translates to: RLRGHGMAKEKKAMWKGENLTSI*LCSGLF
Trigger: AAAGAGACCACTGCACAGTCAGATGCTAGTGAGATT...TTCTCCCTTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp CAAACCCCTGGCAGTGGTGTGCCCTCTGTAATATTTGATGCAGGCACAGACCCATGTGAGTACAAACAATaGACTCTGGCCTTGAATTCC +
Preference number: 4 (lower is better)
Translates to: QTPGSGVPSVIFDAGTDPCEYKQ*TLALNS
Trigger: GGAATTCAAGGCCAGAGTTCATTGTTTGTACTCACA...TGGGTCTGTGCCTGCATCAAATATTACAGAGGGCACACCACTGCCAGGGGTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp GAAGATGCAAACAGGAAACGATTTTGGGATCCCATTCCCAGCTGTGACGCTGTCGGTAAATTTGCAGCTTaGGACATCGCTGGCTGTGTT +
Preference number: 4 (lower is better)
Translates to: EDANRKRFWDPIPSCDAVGKFAA*DIAGCV
Trigger: AACACAGCCAGCGATGTCTCAAGCTGCAAATTTACC...GACAGCGTCACAGCTGGGAATGGGATCCCAAAATCGTTTCCTGTTTGCATCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp CGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAAGGGAGAACTTATCTGTCTGTCCTaGGTGAACGTAGTGACTGTA +
Preference number: 4 (lower is better)
Translates to: RLRGHGMAKEKKAMWKGELICLS*VNVVTV
Trigger: TACAGTCACTACGTTCACTCAGGACAGACAGATAAG...TTCTCCCTTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR GCA 90 bp TCTGACCGCATGCCAACTGAGCGATTCTTTCTGGCCATCCCCTTCCTCTCGCATTTCAGCCCTAACTTCTaGATAACTTACTACAGTGTG +
Preference number: 4 (lower is better)
Translates to: SDRMPTERFFLAIPFLSHFSPNF*ITYYSV
Trigger: CACACTGTAGTAAGTTATGCAGAAGTTAGGGCTGAA...ATGCGAGAGGAAGGGGATGGCCAGAAAGAATCGCTCAGTTGGCATGCGGTCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR GCA 90 bp CCCCAAGTCACCCCATACAGAAGCAGTCCAGAGCAAGGTACCTGCAGGGCAATGACTGAAACTGTGACATaGCTTGTGGAATTGGTAAAT +
Preference number: 4 (lower is better)
Translates to: PQVTPYRSSPEQGTCRAMTETVT*LVELVN
Trigger: ATTTACCAATTCCACAAGGCATGTCACAGTTTCAGT...CATTGCCCTGCAGGTACCTTGCTCTGGACTGCTTCTGTATGGGGTGACTTGGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR GCA 90 bp CGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAAGGGAGAACCAGGGTTTGATTGCTaGAAAAACATCTGTAGCCCT +
Preference number: 4 (lower is better)
Translates to: RLRGHGMAKEKKAMWKGEPGFDC*KNICSP
Trigger: AGGGCTACAGATGTTTTTGCAGCAATCAAACCCTGG...TTCTCCCTTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR GCA 90 bp GAAGATGCAAACAGGAAACGATTTTGGGATCCCATTCCCAGCTGTGACGCTGTCTGTTCCTGGGAACTCTaGTGTTGTTGTTGCTGTTGC +
Preference number: 4 (lower is better)
Translates to: EDANRKRFWDPIPSCDAVCSWEL*CCCCCC
Trigger: GCAACAGCAACAACAACAGCAGAGTTCCCAGGAACA...GACAGCGTCACAGCTGGGAATGGGATCCCAAAATCGTTTCCTGTTTGCATCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp ACAGCTCCGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAACATCTGACTGTGCAGTaGTCTCTTTATGTTTGCGCA +
Preference number: 4 (lower is better)
Translates to: TAPTPRTWNGQREEGNVEHLTVQ*SLYVCA
Trigger: TGCGCAAACATAAAGAGACCACTGCACAGTCAGATG...TTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCGGAGCTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp GCAAGCAAGCCCACCTACCACAGTTGCTTTCCTCTCACAGTCTCGTCTCTAAGGTCACATATTCATAGGTaGATGGCTCCTTTGGGTCTA +
Preference number: 4 (lower is better)
Translates to: ASKPTYHSCFPLTVSSLRSHIHR*MAPLGL
Trigger: TAGACCCAAAGGAGCCATCCACCTATGAATATGTGA...CCTTAGAGACGAGACTGTGAGAGGAAAGCAACTGTGGTAGGTGGGCTTGCTTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp CCCCAAGTCACCCCATACAGAAGCAGTCCAGAGCAAGGTACCTGCAGGGCAATGTCCCAAGACTTCAAATaGCAAATAGCCTATTATTGG +
Preference number: 4 (lower is better)
Translates to: PQVTPYRSSPEQGTCRAMSQDFK*QIAYYW
Trigger: CCAATAATAGGCTATTTGCCATTTGAAGTCTTGGGA...CATTGCCCTGCAGGTACCTTGCTCTGGACTGCTTCTGTATGGGGTGACTTGGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp GTGCTCATGTGCAAGCAAGCCCACCTACCACAGTTGCTTTCCTCTCACAGTCTCCTTTTAGATGCTGCATaGCTCCTAACTGAGCTGAAA +
Preference number: 4 (lower is better)
Translates to: VLMCKQAHLPQLLSSHSLLLDAA*LLTELK
Trigger: TTTCAGCTCAGTTAGGAGCCATGCAGCATCTAAAAG...GAGACTGTGAGAGGAAAGCAACTGTGGTAGGTGGGCTTGCTTGCACATGAGCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp AAGTGGCTTTCTCTCCTCCATCCAGACACAGAGACACTACAGCATCTGTACACAGTCCGCTGCTCTAGCTaGTCTTTTAGATGCTGCATG +
Preference number: 4 (lower is better)
Translates to: KWLSLLHPDTETLQHLYTVRCSS*SFRCCM
Trigger: CATGCAGCATCTAAAAGACCAGCTAGAGCAGCGGAC...TGTGTACAGATGCTGTAGTGTCTCTGTGTCTGGATGGAGGAGAGAAAGCCACTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp GTGCTCATGTGCAAGCAAGCCCACCTACCACAGTTGCTTTCCTCTCACAGTCTCGAGCAGTCACTAATTTaGTCACAAGTTGCTGACCTT +
Preference number: 4 (lower is better)
Translates to: VLMCKQAHLPQLLSSHSLEQSLI*SQVADL
Trigger: AAGGTCAGCAACTTGTGACCAAATTAGTGACTGCTC...GAGACTGTGAGAGGAAAGCAACTGTGGTAGGTGGGCTTGCTTGCACATGAGCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp GAAGATGCAAACAGGAAACGATTTTGGGATCCCATTCCCAGCTGTGACGCTGTCAATCTCACTAGCATCTaGCTGTGCAGTGGTCTCTTT +
Preference number: 4 (lower is better)
Translates to: EDANRKRFWDPIPSCDAVNLTSI*LCSGLF
Trigger: AAAGAGACCACTGCACAGTCAGATGCTAGTGAGATT...GACAGCGTCACAGCTGGGAATGGGATCCCAAAATCGTTTCCTGTTTGCATCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp CCGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAAGGGAGATATCTTATAAACCTCTaGATGTTCTCCCTCTGGGAT +
Preference number: 4 (lower is better)
Translates to: PTPRTWNGQREEGNVEGRYLINL*MFSLWD
Trigger: ATCCCAGAGGGAGAACATTCAGAGGTTTATAAGATA...TCTCCCTTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp GCAAGCAAGCCCACCTACCACAGTTGCTTTCCTCTCACAGTCTCGTCTCTAAGGATTGGTGGTGCCCTGTaGTCTAAAAATAGAAACTTC +
Preference number: 4 (lower is better)
Translates to: ASKPTYHSCFPLTVSSLRIGGAL*SKNRNF
Trigger: GAAGTTTCTATTTTTAGATCACAGGGCACCACCAAT...CCTTAGAGACGAGACTGTGAGAGGAAAGCAACTGTGGTAGGTGGGCTTGCTTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp CCGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAAGGGAGAATTGGTGGTGCCCTGTaGTCTAAAAATAGAAACTTC +
Preference number: 4 (lower is better)
Translates to: PTPRTWNGQREEGNVEGRIGGAL*SKNRNF
Trigger: GAAGTTTCTATTTTTAGATCACAGGGCACCACCAAT...TCTCCCTTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp CACAGCCATATCGTGCCCCTCTTTTGGAGCTGCAAGGGATGCGCTCTGCTTATTATTGGTGGTGCCCTGTaGTCTAAAAATAGAAACTTC +
Preference number: 4 (lower is better)
Translates to: HSHIVPLFWSCKGCALLIIGGAL*SKNRNF
Trigger: GAAGTTTCTATTTTTAGATCACAGGGCACCACCAAT...AATAAGCAGAGCGCATCCCTTGCAGCTCCAAAAGAGGGGCACGATATGGCTGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp ACAGCTCCGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAATGTGAGTACAAACAATaGACTCTGGCCTTGAATTCC +
Preference number: 4 (lower is better)
Translates to: TAPTPRTWNGQREEGNVECEYKQ*TLALNS
Trigger: GGAATTCAAGGCCAGAGTTCATTGTTTGTACTCACA...TTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCGGAGCTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp CCGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAAGGGAGAATTCAATCCAGGGTTTaGTTGCTGCAAAAACATCTG +
Preference number: 4 (lower is better)
Translates to: PTPRTWNGQREEGNVEGRIQSRV*LLQKHL
Trigger: CAGATGTTTTTGCAGCAATCAAACCCTGGATTGAAT...TCTCCCTTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp GCAAGCAAGCCCACCTACCACAGTTGCTTTCCTCTCACAGTCTCGTCTCTAAGGATTCAATCCAGGGTTTaGTTGCTGCAAAAACATCTG +
Preference number: 4 (lower is better)
Translates to: ASKPTYHSCFPLTVSSLRIQSRV*LLQKHL
Trigger: CAGATGTTTTTGCAGCAATCAAACCCTGGATTGAAT...CCTTAGAGACGAGACTGTGAGAGGAAAGCAACTGTGGTAGGTGGGCTTGCTTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR GCA 90 bp CACAGCCATATCGTGCCCCTCTTTTGGAGCTGCAAGGGATGCGCTCTGCTTATTTTCAGCCCTAACTTCTaGATAACTTACTACAGTGTG +
Preference number: 4 (lower is better)
Translates to: HSHIVPLFWSCKGCALLIFSPNF*ITYYSV
Trigger: CACACTGTAGTAAGTTATGCAGAAGTTAGGGCTGAA...AATAAGCAGAGCGCATCCCTTGCAGCTCCAAAAGAGGGGCACGATATGGCTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
CDS-3UTR GCA 90 bp TCATGTGCAAGCAAGCCCACCTACCACAGTTGCTTTCCTCTCACAGTCTCGTCTATCAAACCTTTCCAGTaGTTCCTTGAGACTCACTGT +
Preference number: 4 (lower is better)
Translates to: SCASKPTYHSCFPLTVSSIKPFQ*FLETHC
Trigger: ACAGTGAGTCTCAAGGAAGCACTGGAAAGGTTTGAT...AGACGAGACTGTGAGAGGAAAGCAACTGTGGTAGGTGGGCTTGCTTGCACATGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR GCA 90 bp AAGTGGCTTTCTCTCCTCCATCCAGACACAGAGACACTACAGCATCTGTACACACTGCCGATGAATATTTaGCTCTATCATCCGTGTCCG +
Preference number: 4 (lower is better)
Translates to: KWLSLLHPDTETLQHLYTLPMNI*LYHPCP
Trigger: CGGACACGGATGATAGAGGCAAATATTCATCGGCAG...TGTGTACAGATGCTGTAGTGTCTCTGTGTCTGGATGGAGGAGAGAAAGCCACTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR GCA 90 bp CCGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAAGGGAGAAATCCAGGGTTTGATTaGTGCAAAAACATCTGTAGC +
Preference number: 4 (lower is better)
Translates to: PTPRTWNGQREEGNVEGRNPGFD*CKNICS
Trigger: GCTACAGATGTTTTTGCAGCAATCAAACCCTGGATT...TCTCCCTTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR GCA 90 bp GAAGATGCAAACAGGAAACGATTTTGGGATCCCATTCCCAGCTGTGACGCTGTCTGTTGCTGTATCATGTaGTGGCCTGTGCTGATATGT +
Preference number: 4 (lower is better)
Translates to: EDANRKRFWDPIPSCDAVCCCIM*WPVLIC
Trigger: ACATATCAGCACAGGCCAGCACATGATACAGCAACA...GACAGCGTCACAGCTGGGAATGGGATCCCAAAATCGTTTCCTGTTTGCATCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR GCA 90 bp ACAGCTCCGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAACTTTGTAAAGTCTGTTaGTGTATCATGTGCTGGCCT +
Preference number: 4 (lower is better)
Translates to: TAPTPRTWNGQREEGNVELCKVC*CIMCWP
Trigger: AGGCCAGCACATGATACAGCAACAGACTTTACAAAG...TTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCGGAGCTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR GCA 90 bp AAACACCTGAAAGAGTGTAAGTCTCAATTCAATGTTTGCTTTAGGAGGGGAGGAATGGAATCTGGACCATaGTCCCAGCTGCAGGCTGGG +
Preference number: 4 (lower is better)
Translates to: KHLKECKSQFNVCFRRGGMESGP*SQLQAG
Trigger: CCCAGCCTGCAGCTGGGAGCATGGTCCAGATTCCAT...TCCTCCCCTCCTAAAGCAAACATTGAATTGAGACTTACACTCTTTCAGGTGTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp CAAACCCCTGGCAGTGGTGTGCCCTCTGTAATATTTGATGCAGGCACAGACCCAATATTCATAGGTGGATaGCTCCTTTGGGTCTATTGT +
Preference number: 4 (lower is better)
Translates to: QTPGSGVPSVIFDAGTDPIFIGG*LLWVYC
Trigger: ACAATAGACCCAAAGGAGCCATCCACCTATGAATAT...TGGGTCTGTGCCTGCATCAAATATTACAGAGGGCACACCACTGCCAGGGGTTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp AAGTGGCTTTCTCTCCTCCATCCAGACACAGAGACACTACAGCATCTGTACACACATCTTTTCATGAGCTaGCAAATGCTGTCTGGGAGG +
Preference number: 4 (lower is better)
Translates to: KWLSLLHPDTETLQHLYTHLFMS*QMLSGR
Trigger: CCTCCCAGACAGCATTTGCCAGCTCATGAAAAGATG...TGTGTACAGATGCTGTAGTGTCTCTGTGTCTGGATGGAGGAGAGAAAGCCACTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp AGGCAATGTGGAAGGGAGAAAAGCAATGTGGGTGCTCGACTTACATTGATTTCGGTCCGCTGCTCTAGCTaGTCTTTTAGATGCTGCATG +
Preference number: 4 (lower is better)
Translates to: RQCGREKSNVGARLTLISVRCSS*SFRCCM
Trigger: CATGCAGCATCTAAAAGACCAGCTAGAGCAGCGGAC...CGAAATCAATGTAAGTCGAGCACCCACATTGCTTTTCTCCCTTCCACATTGCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp AAGTGGCTTTCTCTCCTCCATCCAGACACAGAGACACTACAGCATCTGTACACATGCTGTATCATGTGCTaGCCTGTGCTGATATGTCCA +
Preference number: 4 (lower is better)
Translates to: KWLSLLHPDTETLQHLYTCCIMC*PVLICP
Trigger: TGGACATATCAGCACAGGCCAGCACATGATACAGCA...TGTGTACAGATGCTGTAGTGTCTCTGTGTCTGGATGGAGGAGAGAAAGCCACTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp ACTGTCAGAATTGGCTGTGTCCCTATGACCATTTCCCACTGGCTGGTATTTAATCATCGTATTGTACAGTaGGGCTGTGAGAGTGCTCGG +
Preference number: 4 (lower is better)
Translates to: TVRIGCVPMTISHWLVFNHRIVQ*GCESAR
Trigger: CCGAGCACTCTCACAGCCCCACTGTACAATACGATG...ATTAAATACCAGCCAGTGGGAAATGGTCATAGGGACACAGCCAATTCTGACAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp AAGTGGCTTTCTCTCCTCCATCCAGACACAGAGACACTACAGCATCTGTACACATGTTCTGTGGCATACTaGATGGAATCTGGACCATGC +
Preference number: 4 (lower is better)
Translates to: KWLSLLHPDTETLQHLYTCSVAY*MESGPC
Trigger: GCATGGTCCAGATTCCATCCAGTATGCCACAGAACA...TGTGTACAGATGCTGTAGTGTCTCTGTGTCTGGATGGAGGAGAGAAAGCCACTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp AGGCAATGTGGAAGGGAGAAAAGCAATGTGGGTGCTCGACTTACATTGATTTCGGTCGAAGGATTCCCGTaGAGCAACCTAGATGTCTGT +
Preference number: 4 (lower is better)
Translates to: RQCGREKSNVGARLTLISVEGFP*SNLDVC
Trigger: ACAGACATCTAGGTTGCTCCACGGGAATCCTTCGAC...CGAAATCAATGTAAGTCGAGCACCCACATTGCTTTTCTCCCTTCCACATTGCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp GTGCTCATGTGCAAGCAAGCCCACCTACCACAGTTGCTTTCCTCTCACAGTCTCATCTCTGTCAACAATTaGGCTCATTTTACTACAGCT +
Preference number: 4 (lower is better)
Translates to: VLMCKQAHLPQLLSSHSLISVNN*AHFTTA
Trigger: AGCTGTAGTAAAATGAGCTCAATTGTTGACAGAGAT...GAGACTGTGAGAGGAAAGCAACTGTGGTAGGTGGGCTTGCTTGCACATGAGCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp CGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAAGGGAGAATATCTTATAAACCTCTaGATGTTCTCCCTCTGGGAT +
Preference number: 4 (lower is better)
Translates to: RLRGHGMAKEKKAMWKGEYLINL*MFSLWD
Trigger: ATCCCAGAGGGAGAACATTCAGAGGTTTATAAGATA...TTCTCCCTTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp GCAAGCAAGCCCACCTACCACAGTTGCTTTCCTCTCACAGTCTCGTCTCTAAGGATAGTAATCATAGCCTaGTGTTCCCAAGACTTCAAA +
Preference number: 4 (lower is better)
Translates to: ASKPTYHSCFPLTVSSLRIVIIA*CSQDFK
Trigger: TTTGAAGTCTTGGGAACATCAGGCTATGATTACTAT...CCTTAGAGACGAGACTGTGAGAGGAAAGCAACTGTGGTAGGTGGGCTTGCTTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp ACTGTCAGAATTGGCTGTGTCCCTATGACCATTTCCCACTGGCTGGTATTTAATCTGATATGTCCACTCTaGACCTGGTTAGCAGGGACA +
Preference number: 4 (lower is better)
Translates to: TVRIGCVPMTISHWLVFNLICPL*TWLAGT
Trigger: TGTCCCTGCTAACCAGGTTCAGAGTGGACATATCAG...ATTAAATACCAGCCAGTGGGAAATGGTCATAGGGACACAGCCAATTCTGACAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp AAACTACACATCTACAATCTCCTGACTCCACCACATTCAAAACAAAAGTCAGAGTGTACAGTGGGGCTGTaGGAGTGCTCGGTGTCTGAC +
Preference number: 4 (lower is better)
Translates to: KLHIYNLLTPPHSKQKSECTVGL*ECSVSD
Trigger: GTCAGACACCGAGCACTCTCACAGCCCCACTGTACA...CTCTGACTTTTGTTTTGAATGTGGTGGAGTCAGGAGATTGTAGATGTGTAGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp AATAGATATTACTTTGCTAGCATTTCCCCAAATGGGCAACAGAGGCAACATGTGTGGTACTTGGTACCATaGCGGCCCCACAAGCTACAG +
Preference number: 4 (lower is better)
Translates to: NRYYFASISPNGQQRQHVWYLVP*RPHKLQ
Trigger: CTGTAGCTTGTGGGGCCGTCATGGTACCAAGTACCA...CACATGTTGCCTCTGTTGCCCATTTGGGGAAATGCTAGCAAAGTAATATCTATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
CDS-3UTR GCA 90 bp AGGCAATGTGGAAGGGAGAAAAGCAATGTGGGTGCTCGACTTACATTGATTTCGCTGCCGATGAATATTTaGCTCTATCATCCGTGTCCG +
Preference number: 4 (lower is better)
Translates to: RQCGREKSNVGARLTLISLPMNI*LYHPCP
Trigger: CGGACACGGATGATAGAGGCAAATATTCATCGGCAG...CGAAATCAATGTAAGTCGAGCACCCACATTGCTTTTCTCCCTTCCACATTGCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR GCA 90 bp CTACAGCATCTGTACACAGTGAATTCAAACCTGCACAACATTCTCAAAGTCATCGACCATGCTCCCAGCTaGAGGCTGGGAAATCACCAT +
Preference number: 4 (lower is better)
Translates to: LQHLYTVNSNLHNILKVIDHAPS*RLGNHH
Trigger: ATGGTGATTTCCCAGCCTGCAGCTGGGAGCATGGTC...GATGACTTTGAGAATGTTGTGCAGGTTTGAATTCACTGTGTACAGATGCTGTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR GCA 90 bp AAACTACACATCTACAATCTCCTGACTCCACCACATTCAAAACAAAAGTCAGAGATGGAATCTGGACCATaGTCCCAGCTGCAGGCTGGG +
Preference number: 4 (lower is better)
Translates to: KLHIYNLLTPPHSKQKSEMESGP*SQLQAG
Trigger: CCCAGCCTGCAGCTGGGAGCATGGTCCAGATTCCAT...CTCTGACTTTTGTTTTGAATGTGGTGGAGTCAGGAGATTGTAGATGTGTAGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
CDS-3UTR GCA 90 bp AGGCAATGTGGAAGGGAGAAAAGCAATGTGGGTGCTCGACTTACATTGATTTCGTGCTGCTGCTGCTGCTaGTGTTGTGTTACCGATAAT +
Preference number: 4 (lower is better)
Translates to: RQCGREKSNVGARLTLISCCCCC*CCVTDN
Trigger: ATTATCGGTAACACAACAGCAGCAGCAGCAGCAGCA...CGAAATCAATGTAAGTCGAGCACCCACATTGCTTTTCTCCCTTCCACATTGCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp CGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAAGGGAGAAACAGGTGTGAGTTGCTaGATATTAGAATTTCCAGAG +
Preference number: 4 (lower is better)
Translates to: RLRGHGMAKEKKAMWKGETGVSC*ILEFPE
Trigger: CTCTGGAAATTCTAATATCCAGCAACTCACACCTGT...TTCTCCCTTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp AGGCAATGTGGAAGGGAGAAAAGCAATGTGGGTGCTCGACTTACATTGATTTCGTGTTCTGTGGCATACTaGATGGAATCTGGACCATGC +
Preference number: 4 (lower is better)
Translates to: RQCGREKSNVGARLTLISCSVAY*MESGPC
Trigger: GCATGGTCCAGATTCCATCCAGTATGCCACAGAACA...CGAAATCAATGTAAGTCGAGCACCCACATTGCTTTTCTCCCTTCCACATTGCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp CGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAAGGGAGAAATCTCTGTCAACAATTaGGCTCATTTTACTACAGCT +
Preference number: 4 (lower is better)
Translates to: RLRGHGMAKEKKAMWKGEISVNN*AHFTTA
Trigger: AGCTGTAGTAAAATGAGCTCAATTGTTGACAGAGAT...TTCTCCCTTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp TCATGTGCAAGCAAGCCCACCTACCACAGTTGCTTTCCTCTCACAGTCTCGTCTATAGTAATCATAGCCTaGTGTTCCCAAGACTTCAAA +
Preference number: 4 (lower is better)
Translates to: SCASKPTYHSCFPLTVSSIVIIA*CSQDFK
Trigger: TTTGAAGTCTTGGGAACATCAGGCTATGATTACTAT...AGACGAGACTGTGAGAGGAAAGCAACTGTGGTAGGTGGGCTTGCTTGCACATGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp CTACAGCATCTGTACACAGTGAATTCAAACCTGCACAACATTCTCAAAGTCATCTGGGAGTTTATGGACTaGCTGCTGAAGGACGACCTC +
Preference number: 4 (lower is better)
Translates to: LQHLYTVNSNLHNILKVIWEFMD*LLKDDL
Trigger: GAGGTCGTCCTTCAGCAGTCAGTCCATAAACTCCCA...GATGACTTTGAGAATGTTGTGCAGGTTTGAATTCACTGTGTACAGATGCTGTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp CTACAGCATCTGTACACAGTGAATTCAAACCTGCACAACATTCTCAAAGTCATCTGTGCTGGCCTGTGCTaGTATGTCCACTCTGAACCT +
Preference number: 4 (lower is better)
Translates to: LQHLYTVNSNLHNILKVICAGLC*YVHSEP
Trigger: AGGTTCAGAGTGGACATATCAGCACAGGCCAGCACA...GATGACTTTGAGAATGTTGTGCAGGTTTGAATTCACTGTGTACAGATGCTGTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp ACCATCACATACTTTCCTTTTAAGGTCAATTCTAATGTGCCACACTTATCCTCCTGGTACTTGGTACCATaGCGGCCCCACAAGCTACAG +
Preference number: 4 (lower is better)
Translates to: TITYFPFKVNSNVPHLSSWYLVP*RPHKLQ
Trigger: CTGTAGCTTGTGGGGCCGTCATGGTACCAAGTACCA...GGAGGATAAGTGTGGCACATTAGAATTGACCTTAAAAGGAAAGTATGTGATGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR GCA 90 bp ACTGTCAGAATTGGCTGTGTCCCTATGACCATTTCCCACTGGCTGGTATTTAATCTGCCGATGAATATTTaGCTCTATCATCCGTGTCCG +
Preference number: 4 (lower is better)
Translates to: TVRIGCVPMTISHWLVFNLPMNI*LYHPCP
Trigger: CGGACACGGATGATAGAGGCAAATATTCATCGGCAG...ATTAAATACCAGCCAGTGGGAAATGGTCATAGGGACACAGCCAATTCTGACAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR GCA 90 bp AGGCAATGTGGAAGGGAGAAAAGCAATGTGGGTGCTCGACTTACATTGATTTCGCCAGGGTTTGATTGCTaGAAAAACATCTGTAGCCCT +
Preference number: 4 (lower is better)
Translates to: RQCGREKSNVGARLTLISPGFDC*KNICSP
Trigger: AGGGCTACAGATGTTTTTGCAGCAATCAAACCCTGG...CGAAATCAATGTAAGTCGAGCACCCACATTGCTTTTCTCCCTTCCACATTGCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR GCA 90 bp CTACAGCATCTGTACACAGTGAATTCAAACCTGCACAACATTCTCAAAGTCATCCTCTGCTGTTGTTGTTaGTGTTGCTGTGGTGGCTGC +
Preference number: 4 (lower is better)
Translates to: LQHLYTVNSNLHNILKVILCCCC*CCCGGC
Trigger: GCAGCCACCACAGCAACAGCAACAACAACAGCAGAG...GATGACTTTGAGAATGTTGTGCAGGTTTGAATTCACTGTGTACAGATGCTGTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp ACTGTCAGAATTGGCTGTGTCCCTATGACCATTTCCCACTGGCTGGTATTTAATTGCTGTATCATGTGCTaGCCTGTGCTGATATGTCCA +
Preference number: 4 (lower is better)
Translates to: TVRIGCVPMTISHWLVFNCCIMC*PVLICP
Trigger: TGGACATATCAGCACAGGCCAGCACATGATACAGCA...ATTAAATACCAGCCAGTGGGAAATGGTCATAGGGACACAGCCAATTCTGACAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp ACTGTCAGAATTGGCTGTGTCCCTATGACCATTTCCCACTGGCTGGTATTTAATCTGGGTACTGTTCTGTaGCATACTGGATGGAATCTG +
Preference number: 4 (lower is better)
Translates to: TVRIGCVPMTISHWLVFNLGTVL*HTGWNL
Trigger: CAGATTCCATCCAGTATGCCACAGAACAGTACCCAG...ATTAAATACCAGCCAGTGGGAAATGGTCATAGGGACACAGCCAATTCTGACAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR CAA 72 bp ACTGTGACATCACAGCCAAAGCACGGACAAAAAGACTaGTGCCCTGGAAAAGTAACGAGAACACTACTGTGT +
Preference number: 4 (lower is better)
Translates to: TVTSQPKHGQKD*CPGKVTRTLLC
Trigger: ACACAGTAGTGTTCTCGTTACTTTTCCAGGGCACAAGTCTTTTTGTCCGTGCTTTGGCTGTGATGTCACAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
3UTR CAA 72 bp GGAGACCCAGAGAACTGCTTTGGGAACAAGTGTTCCTaGCAGCCTCTCCTAAGTCCTGTAAATACTTACTAT +
Preference number: 4 (lower is better)
Translates to: GDPENCFGNKCS*QPLLSPVNTYY
Trigger: ATAGTAAGTATTTACAGGACTTAGGAGAGGCTGCAAGGAACACTTGTTCCCAAAGCAGTTCTCTGGGTCTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp CTACAGCATCTGTACACAGTGAATTCAAACCTGCACAACATTCTCAAAGTCATCGAAGGAGTTGGGCTGTaGTCAAACCTTTCCAGTGCT +
Preference number: 4 (lower is better)
Translates to: LQHLYTVNSNLHNILKVIEGVGL*SNLSSA
Trigger: AGCACTGGAAAGGTTTGATCACAGCCCAACTCCTTC...GATGACTTTGAGAATGTTGTGCAGGTTTGAATTCACTGTGTACAGATGCTGTAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp GTGTCAAACCTAATGAAATGCACTCATACCTGTGAGGGACAGATAATGCTTTCTGAAGGAGTTGGGCTGTaGTCAAACCTTTCCAGTGCT +
Preference number: 4 (lower is better)
Translates to: VSNLMKCTHTCEGQIMLSEGVGL*SNLSSA
Trigger: AGCACTGGAAAGGTTTGATCACAGCCCAACTCCTTC...AGAAAGCATTATCTGTCCCTCACAGGTATGAGTGCATTTCATTAGGTTTGACAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp AATAGATATTACTTTGCTAGCATTTCCCCAAATGGGCAACAGAGGCAACATGTGGGAGGCAGAAGGAGTTaGGCTGTGATCAAACCTTTC +
Preference number: 4 (lower is better)
Translates to: NRYYFASISPNGQQRQHVGGRRS*AVIKPF
Trigger: GAAAGGTTTGATCACAGCCCAACTCCTTCTGCCTCC...CACATGTTGCCTCTGTTGCCCATTTGGGGAAATGCTAGCAAAGTAATATCTATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp AATGATGCTCTTAAACTGTGGTATGTTGTTCTAAGTGTGTGCTATTCCTCCCATCTCCCAGCTGCAGGCTaGGAAATCACCATCGTATTG +
Preference number: 4 (lower is better)
Translates to: NDALKLWYVVLSVCYSSHLPAAG*EITIVL
Trigger: CAATACGATGGTGATTTCCCAGCCTGCAGCTGGGAG...ATGGGAGGAATAGCACACACTTAGAACAACATACCACAGTTTAAGAGCATCATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp AGGCAATGTGGAAGGGAGAAAAGCAATGTGGGTGCTCGACTTACATTGATTTCGGAGCAGTCACTAATTTaGTCACAAGTTGCTGACCTT +
Preference number: 4 (lower is better)
Translates to: RQCGREKSNVGARLTLISEQSLI*SQVADL
Trigger: AAGGTCAGCAACTTGTGACCAAATTAGTGACTGCTC...CGAAATCAATGTAAGTCGAGCACCCACATTGCTTTTCTCCCTTCCACATTGCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp ACTGTCAGAATTGGCTGTGTCCCTATGACCATTTCCCACTGGCTGGTATTTAATTGTGAGTACAAACAATaGACTCTGGCCTTGAATTCC +
Preference number: 4 (lower is better)
Translates to: TVRIGCVPMTISHWLVFNCEYKQ*TLALNS
Trigger: GGAATTCAAGGCCAGAGTTCATTGTTTGTACTCACA...ATTAAATACCAGCCAGTGGGAAATGGTCATAGGGACACAGCCAATTCTGACAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp ACCATCACATACTTTCCTTTTAAGGTCAATTCTAATGTGCCACACTTATCCTCCGAAGGAGTTGGGCTGTaGTCAAACCTTTCCAGTGCT +
Preference number: 4 (lower is better)
Translates to: TITYFPFKVNSNVPHLSSEGVGL*SNLSSA
Trigger: AGCACTGGAAAGGTTTGATCACAGCCCAACTCCTTC...GGAGGATAAGTGTGGCACATTAGAATTGACCTTAAAAGGAAAGTATGTGATGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR GCA 90 bp ACCATCACATACTTTCCTTTTAAGGTCAATTCTAATGTGCCACACTTATCCTCCGCGAAGGAGGGAAAGTaGTCTGTTGTAGTGGAAAGG +
Preference number: 4 (lower is better)
Translates to: TITYFPFKVNSNVPHLSSAKEGK*SVVVER
Trigger: CCTTTCCACTACAACAGAGCACTTTCCCTCCTTCGC...GGAGGATAAGTGTGGCACATTAGAATTGACCTTAAAAGGAAAGTATGTGATGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp ACTGTCAGAATTGGCTGTGTCCCTATGACCATTTCCCACTGGCTGGTATTTAATTCACATATTCATAGGTaGATGGCTCCTTTGGGTCTA +
Preference number: 4 (lower is better)
Translates to: TVRIGCVPMTISHWLVFNSHIHR*MAPLGL
Trigger: TAGACCCAAAGGAGCCATCCACCTATGAATATGTGA...ATTAAATACCAGCCAGTGGGAAATGGTCATAGGGACACAGCCAATTCTGACAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp GTGTCAAACCTAATGAAATGCACTCATACCTGTGAGGGACAGATAATGCTTTCTCATCTTTTCATGAGCTaGCAAATGCTGTCTGGGAGG +
Preference number: 4 (lower is better)
Translates to: VSNLMKCTHTCEGQIMLSHLFMS*QMLSGR
Trigger: CCTCCCAGACAGCATTTGCCAGCTCATGAAAAGATG...AGAAAGCATTATCTGTCCCTCACAGGTATGAGTGCATTTCATTAGGTTTGACAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp AGGCAATGTGGAAGGGAGAAAAGCAATGTGGGTGCTCGACTTACATTGATTTCGACAGGTGTGAGTTGCTaGATATTAGAATTTCCAGAG +
Preference number: 4 (lower is better)
Translates to: RQCGREKSNVGARLTLISTGVSC*ILEFPE
Trigger: CTCTGGAAATTCTAATATCCAGCAACTCACACCTGT...CGAAATCAATGTAAGTCGAGCACCCACATTGCTTTTCTCCCTTCCACATTGCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp AAACTACACATCTACAATCTCCTGACTCCACCACATTCAAAACAAAAGTCAGAGGGAAGCTGCTGTTCCTaGGAACTCTGCTGTTGTTGT +
Preference number: 4 (lower is better)
Translates to: KLHIYNLLTPPHSKQKSEGSCCS*ELCCCC
Trigger: ACAACAACAGCAGAGTTCCCAGGAACAGCAGCTTCC...CTCTGACTTTTGTTTTGAATGTGGTGGAGTCAGGAGATTGTAGATGTGTAGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp AATGATGCTCTTAAACTGTGGTATGTTGTTCTAAGTGTGTGCTATTCCTCCCATGGTAAATTTGCAGCTTaGGACATCGCTGGCTGTGTT +
Preference number: 4 (lower is better)
Translates to: NDALKLWYVVLSVCYSSHGKFAA*DIAGCV
Trigger: AACACAGCCAGCGATGTCTCAAGCTGCAAATTTACC...ATGGGAGGAATAGCACACACTTAGAACAACATACCACAGTTTAAGAGCATCATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
CDS-3UTR GCA 90 bp GTGTCAAACCTAATGAAATGCACTCATACCTGTGAGGGACAGATAATGCTTTCTCCAGGGTTTGATTGCTaGAAAAACATCTGTAGCCCT +
Preference number: 4 (lower is better)
Translates to: VSNLMKCTHTCEGQIMLSPGFDC*KNICSP
Trigger: AGGGCTACAGATGTTTTTGCAGCAATCAAACCCTGG...AGAAAGCATTATCTGTCCCTCACAGGTATGAGTGCATTTCATTAGGTTTGACAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR GCA 90 bp ACCATCACATACTTTCCTTTTAAGGTCAATTCTAATGTGCCACACTTATCCTCCTGCTGCTGCTGCTGCTaGTGTTGTGTTACCGATAAT +
Preference number: 4 (lower is better)
Translates to: TITYFPFKVNSNVPHLSSCCCCC*CCVTDN
Trigger: ATTATCGGTAACACAACAGCAGCAGCAGCAGCAGCA...GGAGGATAAGTGTGGCACATTAGAATTGACCTTAAAAGGAAAGTATGTGATGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp GTGTCAAACCTAATGAAATGCACTCATACCTGTGAGGGACAGATAATGCTTTCTCATCTGACTGTGCAGTaGTCTCTTTATGTTTGCGCA +
Preference number: 4 (lower is better)
Translates to: VSNLMKCTHTCEGQIMLSHLTVQ*SLYVCA
Trigger: TGCGCAAACATAAAGAGACCACTGCACAGTCAGATG...AGAAAGCATTATCTGTCCCTCACAGGTATGAGTGCATTTCATTAGGTTTGACAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp CTACAGCATCTGTACACAGTGAATTCAAACCTGCACAACATTCTCAAAGTCATCTTAGCAGGGACAACCTaGCCTTGCATATTTACAGGT +
Preference number: 4 (lower is better)
Translates to: LQHLYTVNSNLHNILKVILAGTT*PCIFTG
Trigger: ACCTGTAAATATGCAAGGCCAGGTTGTCCCTGCTAA...GATGACTTTGAGAATGTTGTGCAGGTTTGAATTCACTGTGTACAGATGCTGTAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp TTTGATAAACAAGTATATCCAATTGTACTGGACCCAATTACAACGGCAATATGCGGAAGAGACGTCTGCTaGCTGTGTCCACTCATTACA +
Preference number: 4 (lower is better)
Translates to: FDKQVYPIVLDPITTAICGRDVC*LCPLIT
Trigger: TGTAATGAGTGGACACAGTCAGCAGACGTCTCTTCC...GCATATTGCCGTTGTAATTGGGTCCAGTACAATTGGATATACTTGTTTATCAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
CDS-3UTR GCA 90 bp AATGATGCTCTTAAACTGTGGTATGTTGTTCTAAGTGTGTGCTATTCCTCCCATGAAGAGACTCTTCAATaGCAAGTTCTCGCCGTCTTT +
Preference number: 4 (lower is better)
Translates to: NDALKLWYVVLSVCYSSHEETLQ*QVLAVF
Trigger: AAAGACGGCGAGAACTTGGCATTGAAGAGTCTCTTC...ATGGGAGGAATAGCACACACTTAGAACAACATACCACAGTTTAAGAGCATCATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
CDS-3UTR GCA 90 bp GTGTCAAACCTAATGAAATGCACTCATACCTGTGAGGGACAGATAATGCTTTCTATCAAACCTTTCCAGTaGTTCCTTGAGACTCACTGT +
Preference number: 4 (lower is better)
Translates to: VSNLMKCTHTCEGQIMLSIKPFQ*FLETHC
Trigger: ACAGTGAGTCTCAAGGAAGCACTGGAAAGGTTTGAT...AGAAAGCATTATCTGTCCCTCACAGGTATGAGTGCATTTCATTAGGTTTGACAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR GCA 90 bp ACTGTCAGAATTGGCTGTGTCCCTATGACCATTTCCCACTGGCTGGTATTTAATACTGAAACTGTGACATaGCTTGTGGAATTGGTAAAT +
Preference number: 4 (lower is better)
Translates to: TVRIGCVPMTISHWLVFNTETVT*LVELVN
Trigger: ATTTACCAATTCCACAAGGCATGTCACAGTTTCAGT...ATTAAATACCAGCCAGTGGGAAATGGTCATAGGGACACAGCCAATTCTGACAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR GCA 90 bp AAACACCTGAAAGAGTGTAAGTCTCAATTCAATGTTTGCTTTAGGAGGGGAGGACTTTGTAAAGTCTGTTaGTGTATCATGTGCTGGCCT +
Preference number: 4 (lower is better)
Translates to: KHLKECKSQFNVCFRRGGLCKVC*CIMCWP
Trigger: AGGCCAGCACATGATACAGCAACAGACTTTACAAAG...TCCTCCCCTCCTAAAGCAAACATTGAATTGAGACTTACACTCTTTCAGGTGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp CTACAGCATCTGTACACAGTGAATTCAAACCTGCACAACATTCTCAAAGTCATCTCACATATTCATAGGTaGATGGCTCCTTTGGGTCTA +
Preference number: 4 (lower is better)
Translates to: LQHLYTVNSNLHNILKVISHIHR*MAPLGL
Trigger: TAGACCCAAAGGAGCCATCCACCTATGAATATGTGA...GATGACTTTGAGAATGTTGTGCAGGTTTGAATTCACTGTGTACAGATGCTGTAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp ACTGTCAGAATTGGCTGTGTCCCTATGACCATTTCCCACTGGCTGGTATTTAATTCCCAAGACTTCAAATaGCAAATAGCCTATTATTGG +
Preference number: 4 (lower is better)
Translates to: TVRIGCVPMTISHWLVFNSQDFK*QIAYYW
Trigger: CCAATAATAGGCTATTTGCCATTTGAAGTCTTGGGA...ATTAAATACCAGCCAGTGGGAAATGGTCATAGGGACACAGCCAATTCTGACAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR GCA 90 bp GTGTCAAACCTAATGAAATGCACTCATACCTGTGAGGGACAGATAATGCTTTCTTTCAGCCCTAACTTCTaGATAACTTACTACAGTGTG +
Preference number: 4 (lower is better)
Translates to: VSNLMKCTHTCEGQIMLSFSPNF*ITYYSV
Trigger: CACACTGTAGTAAGTTATGCAGAAGTTAGGGCTGAA...AGAAAGCATTATCTGTCCCTCACAGGTATGAGTGCATTTCATTAGGTTTGACAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR GCA 90 bp CTACAGCATCTGTACACAGTGAATTCAAACCTGCACAACATTCTCAAAGTCATCAATCCAGGGTTTGATTaGTGCAAAAACATCTGTAGC +
Preference number: 4 (lower is better)
Translates to: LQHLYTVNSNLHNILKVINPGFD*CKNICS
Trigger: GCTACAGATGTTTTTGCAGCAATCAAACCCTGGATT...GATGACTTTGAGAATGTTGTGCAGGTTTGAATTCACTGTGTACAGATGCTGTAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp GTGTCAAACCTAATGAAATGCACTCATACCTGTGAGGGACAGATAATGCTTTCTACAGGTGTGAGTTGCTaGATATTAGAATTTCCAGAG +
Preference number: 4 (lower is better)
Translates to: VSNLMKCTHTCEGQIMLSTGVSC*ILEFPE
Trigger: CTCTGGAAATTCTAATATCCAGCAACTCACACCTGT...AGAAAGCATTATCTGTCCCTCACAGGTATGAGTGCATTTCATTAGGTTTGACAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp AATGATGCTCTTAAACTGTGGTATGTTGTTCTAAGTGTGTGCTATTCCTCCCATATTTCCTTGATGAACTaGGGTGTAGCTAATCTGACA +
Preference number: 4 (lower is better)
Translates to: NDALKLWYVVLSVCYSSHISLMN*GVANLT
Trigger: TGTCAGATTAGCTACACCTCAGTTCATCAAGGAAAT...ATGGGAGGAATAGCACACACTTAGAACAACATACCACAGTTTAAGAGCATCATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
CDS-3UTR TCA 90 bp GTGTCAAACCTAATGAAATGCACTCATACCTGTGAGGGACAGATAATGCTTTCTATAGTAATCATAGCCTaGTGTTCCCAAGACTTCAAA +
Preference number: 4 (lower is better)
Translates to: VSNLMKCTHTCEGQIMLSIVIIA*CSQDFK
Trigger: TTTGAAGTCTTGGGAACATCAGGCTATGATTACTAT...AGAAAGCATTATCTGTCCCTCACAGGTATGAGTGCATTTCATTAGGTTTGACAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR GCA 90 bp AAACACCTGAAAGAGTGTAAGTCTCAATTCAATGTTTGCTTTAGGAGGGGAGGAACTGAAACTGTGACATaGCTTGTGGAATTGGTAAAT +
Preference number: 4 (lower is better)
Translates to: KHLKECKSQFNVCFRRGGTETVT*LVELVN
Trigger: ATTTACCAATTCCACAAGGCATGTCACAGTTTCAGT...TCCTCCCCTCCTAAAGCAAACATTGAATTGAGACTTACACTCTTTCAGGTGTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp AAACTACACATCTACAATCTCCTGACTCCACCACATTCAAAACAAAAGTCAGAGATATTCATAGGTGGATaGCTCCTTTGGGTCTATTGT +
Preference number: 4 (lower is better)
Translates to: KLHIYNLLTPPHSKQKSEIFIGG*LLWVYC
Trigger: ACAATAGACCCAAAGGAGCCATCCACCTATGAATAT...CTCTGACTTTTGTTTTGAATGTGGTGGAGTCAGGAGATTGTAGATGTGTAGTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp ACCATCACATACTTTCCTTTTAAGGTCAATTCTAATGTGCCACACTTATCCTCCATATTCATAGGTGGATaGCTCCTTTGGGTCTATTGT +
Preference number: 4 (lower is better)
Translates to: TITYFPFKVNSNVPHLSSIFIGG*LLWVYC
Trigger: ACAATAGACCCAAAGGAGCCATCCACCTATGAATAT...GGAGGATAAGTGTGGCACATTAGAATTGACCTTAAAAGGAAAGTATGTGATGGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp GTGTCAAACCTAATGAAATGCACTCATACCTGTGAGGGACAGATAATGCTTTCTTCCCAAGACTTCAAATaGCAAATAGCCTATTATTGG +
Preference number: 4 (lower is better)
Translates to: VSNLMKCTHTCEGQIMLSSQDFK*QIAYYW
Trigger: CCAATAATAGGCTATTTGCCATTTGAAGTCTTGGGA...AGAAAGCATTATCTGTCCCTCACAGGTATGAGTGCATTTCATTAGGTTTGACAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp TTTGATAAACAAGTATATCCAATTGTACTGGACCCAATTACAACGGCAATATGCTCCACTGCTGGCCTTTaGTCAGGAATCTATAGTAAC +
Preference number: 4 (lower is better)
Translates to: FDKQVYPIVLDPITTAICSTAGL*SGIYSN
Trigger: GTTACTATAGATTCCTGACCAAAGGCCAGCAGTGGA...GCATATTGCCGTTGTAATTGGGTCCAGTACAATTGGATATACTTGTTTATCAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
CDS-3UTR CCA 90 bp AATCCAGACAAACTTAGAAGGTCTCTTTATGCAATCACTATGAAAATGGCAAGTTTAGCAGGGACAACCTaGCCTTGCATATTTACAGGT +
Preference number: 4 (lower is better)
Translates to: NPDKLRRSLYAITMKMASLAGTT*PCIFTG
Trigger: ACCTGTAAATATGCAAGGCCAGGTTGTCCCTGCTAA...ACTTGCCATTTTCATAGTGATTGCATAAAGAGACCTTCTAAGTTTGTCTGGATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
3UTR CAA 72 bp CTTCAAAGGGTAACTTTGATAAACAAGTATATCCAATaGTACTGGACCCAATTACAACGGCAATATGCAGCT +
Preference number: 4 (lower is better)
Translates to: LQRVTLINKYIQ*YWTQLQRQYAA
Trigger: AGCTGCATATTGCCGTTGTAATTGGGTCCAGTACAATTGGATATACTTGTTTATCAAAGTTACCCTTTGAAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
3UTR CAA 72 bp GCTGGTGTACCAGTTTTACTTCTTCAAAGGGTAACTTaGATAAACAAGTATATCCAATTGTACTGGACCCAA +
Preference number: 4 (lower is better)
Translates to: AGVPVLLLQRVT*INKYIQLYWTQ
Trigger: TTGGGTCCAGTACAATTGGATATACTTGTTTATCAAAGTTACCCTTTGAAGAAGTAAAACTGGTACACCAGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
CDS-3UTR GCA 90 bp AATCCAGACAAACTTAGAAGGTCTCTTTATGCAATCACTATGAAAATGGCAAGTAATCCAGGGTTTGATTaGTGCAAAAACATCTGTAGC +
Preference number: 4 (lower is better)
Translates to: NPDKLRRSLYAITMKMASNPGFD*CKNICS
Trigger: GCTACAGATGTTTTTGCAGCAATCAAACCCTGGATT...ACTTGCCATTTTCATAGTGATTGCATAAAGAGACCTTCTAAGTTTGTCTGGATT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp CAAACCCCTGGCAGTGGTGTGCCCTCTGTAATATTTGATGCAGGCACAGACCCACTGCTGAGGCTGGTGTaGCTGGTGGTGCGAAGGAGG +
Preference number: 5 (lower is better)
Translates to: QTPGSGVPSVIFDAGTDPLLRLV*LVVRRR
Trigger: CCTCCTTCGCACCACCAGCAACACCAGCCTCAGCAG...TGGGTCTGTGCCTGCATCAAATATTACAGAGGGCACACCACTGCCAGGGGTTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS CCA 90 bp CATGCTCCCAGCTGCAGGCTGGGAAATCACCATCGTATTGTACAGTaGGGCTGTGAGAGTGCTCGGTGTCTGACTTGGAAGAGACGTCTG +
Preference number: 5 (lower is better)
Translates to: HAPSCRLGNHHRIVQ*GCESARCLTWKRRL
Trigger: CAGACGTCTCTTCCAAGTCAGACACCGAGCACTCTCACAGCCCCACTGTACAATACGATGGTGATTTCCCAGCCTGCAGCTGGGAGCATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp GCAGCTAGTGCTGACAACTGTTGCCCAGCATGCATCTCCGTGTGGACAGCAGCCGCTCCTTTGGGTCTATaGTTCCTCGAAGCATGTGAC +
Preference number: 5 (lower is better)
Translates to: AASADNCCPACISVWTAAAPLGL*FLEACD
Trigger: GTCACATGCTTCGAGGAACAATAGACCCAAAGGAGC...GGCTGCTGTCCACACGGAGATGCATGCTGGGCAACAGTTGTCAGCACTAGCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp GAAGATGCAAACAGGAAACGATTTTGGGATCCCATTCCCAGCTGTGACGCTGTCCTGCTGAGGCTGGTGTaGCTGGTGGTGCGAAGGAGG +
Preference number: 5 (lower is better)
Translates to: EDANRKRFWDPIPSCDAVLLRLV*LVVRRR
Trigger: CCTCCTTCGCACCACCAGCAACACCAGCCTCAGCAG...GACAGCGTCACAGCTGGGAATGGGATCCCAAAATCGTTTCCTGTTTGCATCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS TCA 90 bp GTAGGGATCTTTGTCGGTGTGGAGGAAGGGTCTGAGACTGCGGTGTaGGATGACTTTCGTGAGCTTCTAGAGGAGGCAGAAGGAGTTGGG +
Preference number: 5 (lower is better)
Translates to: VGIFVGVEEGSETAV*DDFRELLEEAEGVG
Trigger: CCCAACTCCTTCTGCCTCCTCTAGAAGCTCACGAAAGTCATCTCACACCGCAGTCTCAGACCCTTCCTCCACACCGACAAAGATCCCTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS TCA 90 bp CAGCTGCAGGCTGGGAAATCACCATCGTATTGTACAGTGGGGCTGTaGGAGTGCTCGGTGTCTGACTTGGAAGAGACGTCTGCTGACTGT +
Preference number: 5 (lower is better)
Translates to: QLQAGKSPSYCTVGL*ECSVSDLEETSADC
Trigger: ACAGTCAGCAGACGTCTCTTCCAAGTCAGACACCGAGCACTCTCACAGCCCCACTGTACAATACGATGGTGATTTCCCAGCCTGCAGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS CCA 90 bp TGTGGCATACTGGATGGAATCTGGACCATGCTCCCAGCTGCAGGCTaGGAAATCACCATCGTATTGTACAGTGGGGCTGTGAGAGTGCTC +
Preference number: 5 (lower is better)
Translates to: CGILDGIWTMLPAAG*EITIVLYSGAVRVL
Trigger: GAGCACTCTCACAGCCCCACTGTACAATACGATGGTGATTTCCCAGCCTGCAGCTGGGAGCATGGTCCAGATTCCATCCAGTATGCCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS CCA 90 bp GTCCTGAGTGAACGTAGTGACTGTAGCACTCTGGGTACTGTTCTGTaGCATACTGGATGGAATCTGGACCATGCTCCCAGCTGCAGGCTG +
Preference number: 5 (lower is better)
Translates to: VLSERSDCSTLGTVL*HTGWNLDHAPSCRL
Trigger: CAGCCTGCAGCTGGGAGCATGGTCCAGATTCCATCCAGTATGCCACAGAACAGTACCCAGAGTGCTACAGTCACTACGTTCACTCAGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp ACAGCTCCGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAATACTGTGGCTGGACCTaGGAAGGGTCAGTCAGGCTG +
Preference number: 5 (lower is better)
Translates to: TAPTPRTWNGQREEGNVEYCGWT*EGSVRL
Trigger: CAGCCTGACTGACCCTTCCAAGGTCCAGCCACAGTA...TTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCGGAGCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS GCA 90 bp ACTGTTCTGTGGCATACTGGATGGAATCTGGACCATGCTCCCAGCTaGAGGCTGGGAAATCACCATCGTATTGTACAGTGGGGCTGTGAG +
Preference number: 5 (lower is better)
Translates to: TVLWHTGWNLDHAPS*RLGNHHRIVQWGCE
Trigger: CTCACAGCCCCACTGTACAATACGATGGTGATTTCCCAGCCTGCAGCTGGGAGCATGGTCCAGATTCCATCCAGTATGCCACAGAACAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS CCA 90 bp CGTAGTGACTGTAGCACTCTGGGTACTGTTCTGTGGCATACTGGATaGAATCTGGACCATGCTCCCAGCTGCAGGCTGGGAAATCACCAT +
Preference number: 5 (lower is better)
Translates to: RSDCSTLGTVLWHTG*NLDHAPSCRLGNHH
Trigger: ATGGTGATTTCCCAGCCTGCAGCTGGGAGCATGGTCCAGATTCCATCCAGTATGCCACAGAACAGTACCCAGAGTGCTACAGTCACTACG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS CCA 90 bp ACTGTAGCACTCTGGGTACTGTTCTGTGGCATACTGGATGGAATCTaGACCATGCTCCCAGCTGCAGGCTGGGAAATCACCATCGTATTG +
Preference number: 5 (lower is better)
Translates to: TVALWVLFCGILDGI*TMLPAAGWEITIVL
Trigger: CAATACGATGGTGATTTCCCAGCCTGCAGCTGGGAGCATGGTCCAGATTCCATCCAGTATGCCACAGAACAGTACCCAGAGTGCTACAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp GCAAGCAAGCCCACCTACCACAGTTGCTTTCCTCTCACAGTCTCGTCTCTAAGGGCTCCTTTGGGTCTATaGTTCCTCGAAGCATGTGAC +
Preference number: 5 (lower is better)
Translates to: ASKPTYHSCFPLTVSSLRAPLGL*FLEACD
Trigger: GTCACATGCTTCGAGGAACAATAGACCCAAAGGAGC...CCTTAGAGACGAGACTGTGAGAGGAAAGCAACTGTGGTAGGTGGGCTTGCTTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp GCAAGCAAGCCCACCTACCACAGTTGCTTTCCTCTCACAGTCTCGTCTCTAAGGAGGTGGATGGCTCCTTaGGGTCTATTGTTCCTCGAA +
Preference number: 5 (lower is better)
Translates to: ASKPTYHSCFPLTVSSLRRWMAP*GLLFLE
Trigger: TTCGAGGAACAATAGACCCAAAGGAGCCATCCACCT...CCTTAGAGACGAGACTGTGAGAGGAAAGCAACTGTGGTAGGTGGGCTTGCTTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp CCCCAAGTCACCCCATACAGAAGCAGTCCAGAGCAAGGTACCTGCAGGGCAATGGCAAATAGCCTATTATaGGTGGTGCCCTGTGATCTA +
Preference number: 5 (lower is better)
Translates to: PQVTPYRSSPEQGTCRAMANSLL*VVPCDL
Trigger: TAGATCACAGGGCACCACCAATAATAGGCTATTTGC...CATTGCCCTGCAGGTACCTTGCTCTGGACTGCTTCTGTATGGGGTGACTTGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp GCAGCTAGTGCTGACAACTGTTGCCCAGCATGCATCTCCGTGTGGACAGCAGCCAGTGCTCGTGACATTTaGCCAGATTTTCTAGGTCAT +
Preference number: 5 (lower is better)
Translates to: AASADNCCPACISVWTAASARDI*PDFLGH
Trigger: ATGACCTAGAAAATCTGGCAAAATGTCACGAGCACT...GGCTGCTGTCCACACGGAGATGCATGCTGGGCAACAGTTGTCAGCACTAGCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp GCAAGCAAGCCCACCTACCACAGTTGCTTTCCTCTCACAGTCTCGTCTCTAAGGCCAGAATCTTGGCTTTaGTCAGCAGCTGTCTCAGGA +
Preference number: 5 (lower is better)
Translates to: ASKPTYHSCFPLTVSSLRPESWL*SAAVSG
Trigger: TCCTGAGACAGCTGCTGACAAAAGCCAAGATTCTGG...CCTTAGAGACGAGACTGTGAGAGGAAAGCAACTGTGGTAGGTGGGCTTGCTTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp CAAACCCCTGGCAGTGGTGTGCCCTCTGTAATATTTGATGCAGGCACAGACCCACCAGAATCTTGGCTTTaGTCAGCAGCTGTCTCAGGA +
Preference number: 5 (lower is better)
Translates to: QTPGSGVPSVIFDAGTDPPESWL*SAAVSG
Trigger: TCCTGAGACAGCTGCTGACAAAAGCCAAGATTCTGG...TGGGTCTGTGCCTGCATCAAATATTACAGAGGGCACACCACTGCCAGGGGTTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp GTGCTCATGTGCAAGCAAGCCCACCTACCACAGTTGCTTTCCTCTCACAGTCTCAGGAGGCAGAAGGAGTaGGGCTGTGATCAAACCTTT +
Preference number: 5 (lower is better)
Translates to: VLMCKQAHLPQLLSSHSLRRQKE*GCDQTF
Trigger: AAAGGTTTGATCACAGCCCAACTCCTTCTGCCTCCT...GAGACTGTGAGAGGAAAGCAACTGTGGTAGGTGGGCTTGCTTGCACATGAGCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp CCGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAAGGGAGAAGGAGGCAGAAGGAGTaGGGCTGTGATCAAACCTTT +
Preference number: 5 (lower is better)
Translates to: PTPRTWNGQREEGNVEGRRRQKE*GCDQTF
Trigger: AAAGGTTTGATCACAGCCCAACTCCTTCTGCCTCCT...TCTCCCTTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp CCGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAAGGGAGAGCTGCCGATGAATATTaGCCTCTATCATCCGTGTCC +
Preference number: 5 (lower is better)
Translates to: PTPRTWNGQREEGNVEGRAADEY*PLSSVS
Trigger: GGACACGGATGATAGAGGCAAATATTCATCGGCAGC...TCTCCCTTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp CGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAAGGGAGAAGGAACTCTGCTGTTGTaGTTGCTGTTGCTGTGGTGG +
Preference number: 5 (lower is better)
Translates to: RLRGHGMAKEKKAMWKGEGTLLL*LLLLWW
Trigger: CCACCACAGCAACAGCAACAACAACAGCAGAGTTCC...TTCTCCCTTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp ACTGTCAGAATTGGCTGTGTCCCTATGACCATTTCCCACTGGCTGGTATTTAATCTGCTGAGGCTGGTGTaGCTGGTGGTGCGAAGGAGG +
Preference number: 5 (lower is better)
Translates to: TVRIGCVPMTISHWLVFNLLRLV*LVVRRR
Trigger: CCTCCTTCGCACCACCAGCAACACCAGCCTCAGCAG...ATTAAATACCAGCCAGTGGGAAATGGTCATAGGGACACAGCCAATTCTGACAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS CCA 90 bp CTGACTGCTGAAGGACGACCTCCGCTGTGTCATCTTTTCATGAGCTaGCAAATGCTGTCTGGGAGGAGTGCTAGTATCAGTAGGGATCTT +
Preference number: 5 (lower is better)
Translates to: LTAEGRPPLCHLFMS*QMLSGRSASISRDL
Trigger: AAGATCCCTACTGATACTAGCACTCCTCCCAGACAGCATTTGCCAGCTCATGAAAAGATGACACAGCGGAGGTCGTCCTTCAGCAGTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS CCA 90 bp CATCGTATTGTACAGTGGGGCTGTGAGAGTGCTCGGTGTCTGACTTaGAAGAGACGTCTGCTGACTGTGTCCACTCATTACACTCTGTTG +
Preference number: 5 (lower is better)
Translates to: HRIVQWGCESARCLT*KRRLLTVSTHYTLL
Trigger: CAACAGAGTGTAATGAGTGGACACAGTCAGCAGACGTCTCTTCCAAGTCAGACACCGAGCACTCTCACAGCCCCACTGTACAATACGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp GCAGCTAGTGCTGACAACTGTTGCCCAGCATGCATCTCCGTGTGGACAGCAGCCCTTTTTGCTTTGTCCTaGTCATCTTCTTCCACCAAT +
Preference number: 5 (lower is better)
Translates to: AASADNCCPACISVWTAALFALS*SSSSTN
Trigger: ATTGGTGGAAGAAGATGACAAGGACAAAGCAAAAAG...GGCTGCTGTCCACACGGAGATGCATGCTGGGCAACAGTTGTCAGCACTAGCTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp ACAGCTCCGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAAAGGTGGATGGCTCCTTaGGGTCTATTGTTCCTCGAA +
Preference number: 5 (lower is better)
Translates to: TAPTPRTWNGQREEGNVERWMAP*GLLFLE
Trigger: TTCGAGGAACAATAGACCCAAAGGAGCCATCCACCT...TTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCGGAGCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp CGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAAGGGAGAACCAGAATCTTGGCTTTaGTCAGCAGCTGTCTCAGGA +
Preference number: 5 (lower is better)
Translates to: RLRGHGMAKEKKAMWKGEPESWL*SAAVSG
Trigger: TCCTGAGACAGCTGCTGACAAAAGCCAAGATTCTGG...TTCTCCCTTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS TCA 90 bp GTCTGTTGCTGTATCATGTGCTGGCCTGTGCTGATATGTCCACTCTaGACCTGGTTAGCAGGGACAACCTGGCCTTGCATATTTACAGGT +
Preference number: 5 (lower is better)
Translates to: VCCCIMCWPVLICPL*TWLAGTTWPCIFTG
Trigger: ACCTGTAAATATGCAAGGCCAGGTTGTCCCTGCTAACCAGGTTCAGAGTGGACATATCAGCACAGGCCAGCACATGATACAGCAACAGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp TCTGACCGCATGCCAACTGAGCGATTCTTTCTGGCCATCCCCTTCCTCTCGCATTGTAGAACAGTAGACTaGTCCATCTTTCTCGCGTTA +
Preference number: 5 (lower is better)
Translates to: SDRMPTERFFLAIPFLSHCRTVD*SIFLAL
Trigger: TAACGCGAGAAAGATGGACAAGTCTACTGTTCTACA...ATGCGAGAGGAAGGGGATGGCCAGAAAGAATCGCTCAGTTGGCATGCGGTCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp GCAGCTAGTGCTGACAACTGTTGCCCAGCATGCATCTCCGTGTGGACAGCAGCCGTTCCTTCAAAACCATaGTGTGTTGAAGTTGATACA +
Preference number: 5 (lower is better)
Translates to: AASADNCCPACISVWTAAVPSKP*CVEVDT
Trigger: TGTATCAACTTCAACACACAATGGTTTTGAAGGAAC...GGCTGCTGTCCACACGGAGATGCATGCTGGGCAACAGTTGTCAGCACTAGCTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp GCAAGCAAGCCCACCTACCACAGTTGCTTTCCTCTCACAGTCTCGTCTCTAAGGGCAAATAGCCTATTATaGGTGGTGCCCTGTGATCTA +
Preference number: 5 (lower is better)
Translates to: ASKPTYHSCFPLTVSSLRANSLL*VVPCDL
Trigger: TAGATCACAGGGCACCACCAATAATAGGCTATTTGC...CCTTAGAGACGAGACTGTGAGAGGAAAGCAACTGTGGTAGGTGGGCTTGCTTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp GAAGATGCAAACAGGAAACGATTTTGGGATCCCATTCCCAGCTGTGACGCTGTCGCTGCCGATGAATATTaGCCTCTATCATCCGTGTCC +
Preference number: 5 (lower is better)
Translates to: EDANRKRFWDPIPSCDAVAADEY*PLSSVS
Trigger: GGACACGGATGATAGAGGCAAATATTCATCGGCAGC...GACAGCGTCACAGCTGGGAATGGGATCCCAAAATCGTTTCCTGTTTGCATCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp TCATGTGCAAGCAAGCCCACCTACCACAGTTGCTTTCCTCTCACAGTCTCGTCTGAAATCACCATCGTATaGTACAGTGGGGCTGTGAGA +
Preference number: 5 (lower is better)
Translates to: SCASKPTYHSCFPLTVSSEITIV*YSGAVR
Trigger: TCTCACAGCCCCACTGTACAATACGATGGTGATTTC...AGACGAGACTGTGAGAGGAAAGCAACTGTGGTAGGTGGGCTTGCTTGCACATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp ACAGCTCCGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAAGAAATCACCATCGTATaGTACAGTGGGGCTGTGAGA +
Preference number: 5 (lower is better)
Translates to: TAPTPRTWNGQREEGNVEEITIV*YSGAVR
Trigger: TCTCACAGCCCCACTGTACAATACGATGGTGATTTC...TTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCGGAGCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS GCA 90 bp TCTAGAGGAGGCAGAAGGAGTTGGGCTGTGATCAAACCTTTCCAGTaGTTCCTTGAGACTCACTGTGTTGATACGATTGTCAGACCCAGA +
Preference number: 5 (lower is better)
Translates to: SRGGRRSWAVIKPFQ*FLETHCVDTIVRPR
Trigger: TCTGGGTCTGACAATCGTATCAACACAGTGAGTCTCAAGGAAGCACTGGAAAGGTTTGATCACAGCCCAACTCCTTCTGCCTCCTCTAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp AAGTGGCTTTCTCTCCTCCATCCAGACACAGAGACACTACAGCATCTGTACACAGCTCCTTTGGGTCTATaGTTCCTCGAAGCATGTGAC +
Preference number: 5 (lower is better)
Translates to: KWLSLLHPDTETLQHLYTAPLGL*FLEACD
Trigger: GTCACATGCTTCGAGGAACAATAGACCCAAAGGAGC...TGTGTACAGATGCTGTAGTGTCTCTGTGTCTGGATGGAGGAGAGAAAGCCACTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp ACAGCTCCGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAAAGGCCTATGTGTGCGTaGTATAGTTCCTTCAAAACC +
Preference number: 5 (lower is better)
Translates to: TAPTPRTWNGQREEGNVERPMCA*YSSFKT
Trigger: GGTTTTGAAGGAACTATACAACGCACACATAGGCCT...TTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCGGAGCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp CGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAAGGGAGAAAGGCCTATGTGTGCGTaGTATAGTTCCTTCAAAACC +
Preference number: 5 (lower is better)
Translates to: RLRGHGMAKEKKAMWKGERPMCA*YSSFKT
Trigger: GGTTTTGAAGGAACTATACAACGCACACATAGGCCT...TTCTCCCTTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp CAAACCCCTGGCAGTGGTGTGCCCTCTGTAATATTTGATGCAGGCACAGACCCAAGTGCTCGTGACATTTaGCCAGATTTTCTAGGTCAT +
Preference number: 5 (lower is better)
Translates to: QTPGSGVPSVIFDAGTDPSARDI*PDFLGH
Trigger: ATGACCTAGAAAATCTGGCAAAATGTCACGAGCACT...TGGGTCTGTGCCTGCATCAAATATTACAGAGGGCACACCACTGCCAGGGGTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp CGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAAGGGAGAAACTGTGTTGATACGATaGTCAGACCCAGAATCTTGG +
Preference number: 5 (lower is better)
Translates to: RLRGHGMAKEKKAMWKGETVLIR*SDPESW
Trigger: CCAAGATTCTGGGTCTGACAATCGTATCAACACAGT...TTCTCCCTTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS TCA 90 bp GATGACTTTCGTGAGCTTCTAGAGGAGGCAGAAGGAGTTGGGCTGTaGTCAAACCTTTCCAGTGCTTCCTTGAGACTCACTGTGTTGATA +
Preference number: 5 (lower is better)
Translates to: DDFRELLEEAEGVGL*SNLSSASLRLTVLI
Trigger: TATCAACACAGTGAGTCTCAAGGAAGCACTGGAAAGGTTTGATCACAGCCCAACTCCTTCTGCCTCCTCTAGAAGCTCACGAAAGTCATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp TCATGTGCAAGCAAGCCCACCTACCACAGTTGCTTTCCTCTCACAGTCTCGTCTTGTAGAACAGTAGACTaGTCCATCTTTCTCGCGTTA +
Preference number: 5 (lower is better)
Translates to: SCASKPTYHSCFPLTVSSCRTVD*SIFLAL
Trigger: TAACGCGAGAAAGATGGACAAGTCTACTGTTCTACA...AGACGAGACTGTGAGAGGAAAGCAACTGTGGTAGGTGGGCTTGCTTGCACATGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp GAAGATGCAAACAGGAAACGATTTTGGGATCCCATTCCCAGCTGTGACGCTGTCACTGTGTTGATACGATaGTCAGACCCAGAATCTTGG +
Preference number: 5 (lower is better)
Translates to: EDANRKRFWDPIPSCDAVTVLIR*SDPESW
Trigger: CCAAGATTCTGGGTCTGACAATCGTATCAACACAGT...GACAGCGTCACAGCTGGGAATGGGATCCCAAAATCGTTTCCTGTTTGCATCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp ACAGCTCCGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAACATCTCTGTCAACAATaGAGCTCATTTTACTACAGC +
Preference number: 5 (lower is better)
Translates to: TAPTPRTWNGQREEGNVEHLCQQ*SSFYYS
Trigger: GCTGTAGTAAAATGAGCTCAATTGTTGACAGAGATG...TTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCGGAGCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp GCAAGCAAGCCCACCTACCACAGTTGCTTTCCTCTCACAGTCTCGTCTCTAAGGAATTCAATCCAGGGTTaGATTGCTGCAAAAACATCT +
Preference number: 5 (lower is better)
Translates to: ASKPTYHSCFPLTVSSLRNSIQG*IAAKTS
Trigger: AGATGTTTTTGCAGCAATCAAACCCTGGATTGAATT...CCTTAGAGACGAGACTGTGAGAGGAAAGCAACTGTGGTAGGTGGGCTTGCTTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp CCGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAAGGGAGAAATTCAATCCAGGGTTaGATTGCTGCAAAAACATCT +
Preference number: 5 (lower is better)
Translates to: PTPRTWNGQREEGNVEGRNSIQG*IAAKTS
Trigger: AGATGTTTTTGCAGCAATCAAACCCTGGATTGAATT...TCTCCCTTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp CAAACCCCTGGCAGTGGTGTGCCCTCTGTAATATTTGATGCAGGCACAGACCCAATTTACAGGTGTGAGTaGCTGGATATTAGAATTTCC +
Preference number: 5 (lower is better)
Translates to: QTPGSGVPSVIFDAGTDPIYRCE*LDIRIS
Trigger: GGAAATTCTAATATCCAGCAACTCACACCTGTAAAT...TGGGTCTGTGCCTGCATCAAATATTACAGAGGGCACACCACTGCCAGGGGTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp CGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAAGGGAGAAGTTGACTCTGCTGAGTaGATGTACTTTGTAAAGTCT +
Preference number: 5 (lower is better)
Translates to: RLRGHGMAKEKKAMWKGEVDSAE*MYFVKS
Trigger: AGACTTTACAAAGTACATCAACTCAGCAGAGTCAAC...TTCTCCCTTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp CGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAAGGGAGAACACAAGTTGCTGACCTaGAGAAAATCTTATCTGTCT +
Preference number: 5 (lower is better)
Translates to: RLRGHGMAKEKKAMWKGEHKLLT*RKSYLS
Trigger: AGACAGATAAGATTTTCTCAAGGTCAGCAACTTGTG...TTCTCCCTTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp AATGATGCTCTTAAACTGTGGTATGTTGTTCTAAGTGTGTGCTATTCCTCCCATTACTGTGGCTGGACCTaGGAAGGGTCAGTCAGGCTG +
Preference number: 5 (lower is better)
Translates to: NDALKLWYVVLSVCYSSHYCGWT*EGSVRL
Trigger: CAGCCTGACTGACCCTTCCAAGGTCCAGCCACAGTA...ATGGGAGGAATAGCACACACTTAGAACAACATACCACAGTTTAAGAGCATCATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp GTGCTCATGTGCAAGCAAGCCCACCTACCACAGTTGCTTTCCTCTCACAGTCTCTCTGTTGACTCTGAGTaGATGTACTTTGTAAAGTCT +
Preference number: 5 (lower is better)
Translates to: VLMCKQAHLPQLLSSHSLSVDSE*MYFVKS
Trigger: AGACTTTACAAAGTACATCAACTCAGAGTCAACAGA...GAGACTGTGAGAGGAAAGCAACTGTGGTAGGTGGGCTTGCTTGCACATGAGCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202122.2
CDS-3UTR CAA 90 bp CGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAAGGGAGAAAATTCAATCCAGGGTTaGATTGCTGCAAAAACATCT +
Preference number: 5 (lower is better)
Translates to: RLRGHGMAKEKKAMWKGENSIQG*IAAKTS
Trigger: AGATGTTTTTGCAGCAATCAAACCCTGGATTGAATT...TTCTCCCTTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp ACAGCTCCGACTCCGAGGACATGGAATGGCCAAAGAGAAGAAGGCAATGTGGAAATTTACAGGTGTGAGTaGCTGGATATTAGAATTTCC +
Preference number: 5 (lower is better)
Translates to: TAPTPRTWNGQREEGNVEIYRCE*LDIRIS
Trigger: GGAAATTCTAATATCCAGCAACTCACACCTGTAAAT...TTCCACATTGCCTTCTTCTCTTTGGCCATTCCATGTCCTCGGAGTCGGAGCTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp ACTGTCAGAATTGGCTGTGTCCCTATGACCATTTCCCACTGGCTGGTATTTAATGAAATCACCATCGTATaGTACAGTGGGGCTGTGAGA +
Preference number: 5 (lower is better)
Translates to: TVRIGCVPMTISHWLVFNEITIV*YSGAVR
Trigger: TCTCACAGCCCCACTGTACAATACGATGGTGATTTC...ATTAAATACCAGCCAGTGGGAAATGGTCATAGGGACACAGCCAATTCTGACAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp AAGTGGCTTTCTCTCCTCCATCCAGACACAGAGACACTACAGCATCTGTACACACATCTCTGTCAACAATaGAGCTCATTTTACTACAGC +
Preference number: 5 (lower is better)
Translates to: KWLSLLHPDTETLQHLYTHLCQQ*SSFYYS
Trigger: GCTGTAGTAAAATGAGCTCAATTGTTGACAGAGATG...TGTGTACAGATGCTGTAGTGTCTCTGTGTCTGGATGGAGGAGAGAAAGCCACTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp GTGTCAAACCTAATGAAATGCACTCATACCTGTGAGGGACAGATAATGCTTTCTAGGTGGATGGCTCCTTaGGGTCTATTGTTCCTCGAA +
Preference number: 5 (lower is better)
Translates to: VSNLMKCTHTCEGQIMLSRWMAP*GLLFLE
Trigger: TTCGAGGAACAATAGACCCAAAGGAGCCATCCACCT...AGAAAGCATTATCTGTCCCTCACAGGTATGAGTGCATTTCATTAGGTTTGACAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp ACTGTCAGAATTGGCTGTGTCCCTATGACCATTTCCCACTGGCTGGTATTTAATGTGGAATTGGTAAATTaGCAGCTTGAGACATCGCTG +
Preference number: 5 (lower is better)
Translates to: TVRIGCVPMTISHWLVFNVELVN*QLETSL
Trigger: CAGCGATGTCTCAAGCTGCAAATTTACCAATTCCAC...ATTAAATACCAGCCAGTGGGAAATGGTCATAGGGACACAGCCAATTCTGACAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp AAGTGGCTTTCTCTCCTCCATCCAGACACAGAGACACTACAGCATCTGTACACACACAAGTTGCTGACCTaGAGAAAATCTTATCTGTCT +
Preference number: 5 (lower is better)
Translates to: KWLSLLHPDTETLQHLYTHKLLT*RKSYLS
Trigger: AGACAGATAAGATTTTCTCAAGGTCAGCAACTTGTG...TGTGTACAGATGCTGTAGTGTCTCTGTGTCTGGATGGAGGAGAGAAAGCCACTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp AAACTACACATCTACAATCTCCTGACTCCACCACATTCAAAACAAAAGTCAGAGAGGAGGCAGAAGGAGTaGGGCTGTGATCAAACCTTT +
Preference number: 5 (lower is better)
Translates to: KLHIYNLLTPPHSKQKSERRQKE*GCDQTF
Trigger: AAAGGTTTGATCACAGCCCAACTCCTTCTGCCTCCT...CTCTGACTTTTGTTTTGAATGTGGTGGAGTCAGGAGATTGTAGATGTGTAGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp AAACTACACATCTACAATCTCCTGACTCCACCACATTCAAAACAAAAGTCAGAGGCTGCCGATGAATATTaGCCTCTATCATCCGTGTCC +
Preference number: 5 (lower is better)
Translates to: KLHIYNLLTPPHSKQKSEAADEY*PLSSVS
Trigger: GGACACGGATGATAGAGGCAAATATTCATCGGCAGC...CTCTGACTTTTGTTTTGAATGTGGTGGAGTCAGGAGATTGTAGATGTGTAGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp GTGTCAAACCTAATGAAATGCACTCATACCTGTGAGGGACAGATAATGCTTTCTACTGTGTTGATACGATaGTCAGACCCAGAATCTTGG +
Preference number: 5 (lower is better)
Translates to: VSNLMKCTHTCEGQIMLSTVLIR*SDPESW
Trigger: CCAAGATTCTGGGTCTGACAATCGTATCAACACAGT...AGAAAGCATTATCTGTCCCTCACAGGTATGAGTGCATTTCATTAGGTTTGACAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp CTACAGCATCTGTACACAGTGAATTCAAACCTGCACAACATTCTCAAAGTCATCGTGGAATTGGTAAATTaGCAGCTTGAGACATCGCTG +
Preference number: 5 (lower is better)
Translates to: LQHLYTVNSNLHNILKVIVELVN*QLETSL
Trigger: CAGCGATGTCTCAAGCTGCAAATTTACCAATTCCAC...GATGACTTTGAGAATGTTGTGCAGGTTTGAATTCACTGTGTACAGATGCTGTAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp AATCCAGACAAACTTAGAAGGTCTCTTTATGCAATCACTATGAAAATGGCAAGTGGAACTCTGCTGTTGTaGTTGCTGTTGCTGTGGTGG +
Preference number: 5 (lower is better)
Translates to: NPDKLRRSLYAITMKMASGTLLL*LLLLWW
Trigger: CCACCACAGCAACAGCAACAACAACAGCAGAGTTCC...ACTTGCCATTTTCATAGTGATTGCATAAAGAGACCTTCTAAGTTTGTCTGGATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp ACTGTCAGAATTGGCTGTGTCCCTATGACCATTTCCCACTGGCTGGTATTTAATATTTACAGGTGTGAGTaGCTGGATATTAGAATTTCC +
Preference number: 5 (lower is better)
Translates to: TVRIGCVPMTISHWLVFNIYRCE*LDIRIS
Trigger: GGAAATTCTAATATCCAGCAACTCACACCTGTAAAT...ATTAAATACCAGCCAGTGGGAAATGGTCATAGGGACACAGCCAATTCTGACAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp AAACTACACATCTACAATCTCCTGACTCCACCACATTCAAAACAAAAGTCAGAGCATCTCTGTCAACAATaGAGCTCATTTTACTACAGC +
Preference number: 5 (lower is better)
Translates to: KLHIYNLLTPPHSKQKSEHLCQQ*SSFYYS
Trigger: GCTGTAGTAAAATGAGCTCAATTGTTGACAGAGATG...CTCTGACTTTTGTTTTGAATGTGGTGGAGTCAGGAGATTGTAGATGTGTAGTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp ACCATCACATACTTTCCTTTTAAGGTCAATTCTAATGTGCCACACTTATCCTCCCTTTTTGCTTTGTCCTaGTCATCTTCTTCCACCAAT +
Preference number: 5 (lower is better)
Translates to: TITYFPFKVNSNVPHLSSLFALS*SSSSTN
Trigger: ATTGGTGGAAGAAGATGACAAGGACAAAGCAAAAAG...GGAGGATAAGTGTGGCACATTAGAATTGACCTTAAAAGGAAAGTATGTGATGGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp TGCATTTTATTCAGTGCTGTATTTCCAAACATAGCTTATGAAAACCAGGGAACCTGTAGAACAGTAGACTaGTCCATCTTTCTCGCGTTA +
Preference number: 5 (lower is better)
Translates to: CILFSAVFPNIAYENQGTCRTVD*SIFLAL
Trigger: TAACGCGAGAAAGATGGACAAGTCTACTGTTCTACA...GGTTCCCTGGTTTTCATAAGCTATGTTTGGAAATACAGCACTGAATAAAATGCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp GTGTCAAACCTAATGAAATGCACTCATACCTGTGAGGGACAGATAATGCTTTCTGTTCCTTCAAAACCATaGTGTGTTGAAGTTGATACA +
Preference number: 5 (lower is better)
Translates to: VSNLMKCTHTCEGQIMLSVPSKP*CVEVDT
Trigger: TGTATCAACTTCAACACACAATGGTTTTGAAGGAAC...AGAAAGCATTATCTGTCCCTCACAGGTATGAGTGCATTTCATTAGGTTTGACAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp TTTGATAAACAAGTATATCCAATTGTACTGGACCCAATTACAACGGCAATATGCGCAAATAGCCTATTATaGGTGGTGCCCTGTGATCTA +
Preference number: 5 (lower is better)
Translates to: FDKQVYPIVLDPITTAICANSLL*VVPCDL
Trigger: TAGATCACAGGGCACCACCAATAATAGGCTATTTGC...GCATATTGCCGTTGTAATTGGGTCCAGTACAATTGGATATACTTGTTTATCAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp AATCCAGACAAACTTAGAAGGTCTCTTTATGCAATCACTATGAAAATGGCAAGTGTGGAATTGGTAAATTaGCAGCTTGAGACATCGCTG +
Preference number: 5 (lower is better)
Translates to: NPDKLRRSLYAITMKMASVELVN*QLETSL
Trigger: CAGCGATGTCTCAAGCTGCAAATTTACCAATTCCAC...ACTTGCCATTTTCATAGTGATTGCATAAAGAGACCTTCTAAGTTTGTCTGGATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp AATCCAGACAAACTTAGAAGGTCTCTTTATGCAATCACTATGAAAATGGCAAGTAGTGCTCGTGACATTTaGCCAGATTTTCTAGGTCAT +
Preference number: 5 (lower is better)
Translates to: NPDKLRRSLYAITMKMASSARDI*PDFLGH
Trigger: ATGACCTAGAAAATCTGGCAAAATGTCACGAGCACT...ACTTGCCATTTTCATAGTGATTGCATAAAGAGACCTTCTAAGTTTGTCTGGATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp AATCCAGACAAACTTAGAAGGTCTCTTTATGCAATCACTATGAAAATGGCAAGTGTTGACTCTGCTGAGTaGATGTACTTTGTAAAGTCT +
Preference number: 5 (lower is better)
Translates to: NPDKLRRSLYAITMKMASVDSAE*MYFVKS
Trigger: AGACTTTACAAAGTACATCAACTCAGCAGAGTCAAC...ACTTGCCATTTTCATAGTGATTGCATAAAGAGACCTTCTAAGTTTGTCTGGATT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075159.5
ENSMUST00000202651.4
CDS-3UTR CAA 90 bp TTTGATAAACAAGTATATCCAATTGTACTGGACCCAATTACAACGGCAATATGCGTTCCTTCAAAACCATaGTGTGTTGAAGTTGATACA +
Preference number: 5 (lower is better)
Translates to: FDKQVYPIVLDPITTAICVPSKP*CVEVDT
Trigger: TGTATCAACTTCAACACACAATGGTTTTGAAGGAAC...GCATATTGCCGTTGTAATTGGGTCCAGTACAATTGGATATACTTGTTTATCAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202651.4
CDS CCA 72 bp CTGGATGGAATCTGGACCATGCTCCCAGCTGCAGGCTaGGAAATCACCATCGTATTGTACAGTGGGGCTGTG +
Preference number: 6 (lower is better)
Translates to: LDGIWTMLPAAG*EITIVLYSGAV
Trigger: CACAGCCCCACTGTACAATACGATGGTGATTTCCCAGCCTGCAGCTGGGAGCATGGTCCAGATTCCATCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS CCA 72 bp AGCTGCAGGCTGGGAAATCACCATCGTATTGTACAGTaGGGCTGTGAGAGTGCTCGGTGTCTGACTTGGAAG +
Preference number: 6 (lower is better)
Translates to: SCRLGNHHRIVQ*GCESARCLTWK
Trigger: CTTCCAAGTCAGACACCGAGCACTCTCACAGCCCCACTGTACAATACGATGGTGATTTCCCAGCCTGCAGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS CCA 72 bp ATAGGCAGTCACCACCTGACCCATAAGCATGGTACTTaGTACCATGACGGCCCCACAAGCTACAGGAGCAGT +
Preference number: 6 (lower is better)
Translates to: IGSHHLTHKHGT*YHDGPTSYRSS
Trigger: ACTGCTCCTGTAGCTTGTGGGGCCGTCATGGTACCAAGTACCATGCTTATGGGTCAGGTGGTGACTGCCTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS TCA 72 bp TTTGTCGGTGTGGAGGAAGGGTCTGAGACTGCGGTGTaGGATGACTTTCGTGAGCTTCTAGAGGAGGCAGAA +
Preference number: 6 (lower is better)
Translates to: FVGVEEGSETAV*DDFRELLEEAE
Trigger: TTCTGCCTCCTCTAGAAGCTCACGAAAGTCATCTCACACCGCAGTCTCAGACCCTTCCTCCACACCGACAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS TCA 72 bp CTGCTGAAGGACGACCTCCGCTGTGTCATCTTTTCATaGGCTGGCAAATGCTGTCTGGGAGGAGTGCTAGTA +
Preference number: 6 (lower is better)
Translates to: LLKDDLRCVIFS*AGKCCLGGVLV
Trigger: TACTAGCACTCCTCCCAGACAGCATTTGCCAGCTCATGAAAAGATGACACAGCGGAGGTCGTCCTTCAGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS TCA 72 bp GCTGGGAAATCACCATCGTATTGTACAGTGGGGCTGTaGGAGTGCTCGGTGTCTGACTTGGAAGAGACGTCT +
Preference number: 6 (lower is better)
Translates to: AGKSPSYCTVGL*ECSVSDLEETS
Trigger: AGACGTCTCTTCCAAGTCAGACACCGAGCACTCTCACAGCCCCACTGTACAATACGATGGTGATTTCCCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS GCA 72 bp TGGCATACTGGATGGAATCTGGACCATGCTCCCAGCTaGAGGCTGGGAAATCACCATCGTATTGTACAGTGG +
Preference number: 6 (lower is better)
Translates to: WHTGWNLDHAPS*RLGNHHRIVQW
Trigger: CCACTGTACAATACGATGGTGATTTCCCAGCCTGCAGCTGGGAGCATGGTCCAGATTCCATCCAGTATGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS CCA 72 bp GAACGTAGTGACTGTAGCACTCTGGGTACTGTTCTGTaGCATACTGGATGGAATCTGGACCATGCTCCCAGC +
Preference number: 6 (lower is better)
Translates to: ERSDCSTLGTVL*HTGWNLDHAPS
Trigger: GCTGGGAGCATGGTCCAGATTCCATCCAGTATGCCACAGAACAGTACCCAGAGTGCTACAGTCACTACGTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS CCA 72 bp GCAGCAGAGAGGATGAGCTGTGTCGAAGGATTCCCGTaGAGCAACCTAGATGTCTGTAAGAACTGCTGTGGT +
Preference number: 6 (lower is better)
Translates to: AAERMSCVEGFP*SNLDVCKNCCG
Trigger: ACCACAGCAGTTCTTACAGACATCTAGGTTGCTCCACGGGAATCCTTCGACACAGCTCATCCTCTCTGCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS TCA 72 bp CGTGAGCTTCTAGAGGAGGCAGAAGGAGTTGGGCTGTaGTCAAACCTTTCCAGTGCTTCCTTGAGACTCACT +
Preference number: 6 (lower is better)
Translates to: RELLEEAEGVGL*SNLSSASLRLT
Trigger: AGTGAGTCTCAAGGAAGCACTGGAAAGGTTTGATCACAGCCCAACTCCTTCTGCCTCCTCTAGAAGCTCACG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS CCA 72 bp GAAGGACGACCTCCGCTGTGTCATCTTTTCATGAGCTaGCAAATGCTGTCTGGGAGGAGTGCTAGTATCAGT +
Preference number: 6 (lower is better)
Translates to: EGRPPLCHLFMS*QMLSGRSASIS
Trigger: ACTGATACTAGCACTCCTCCCAGACAGCATTTGCCAGCTCATGAAAAGATGACACAGCGGAGGTCGTCCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS TCA 72 bp ATGGACCAACTGACTGGGAGTTTATGGACTGACTGCTaGAGGACGACCTCCGCTGTGTCATCTTTTCATGAG +
Preference number: 6 (lower is better)
Translates to: MDQLTGSLWTDC*RTTSAVSSFHE
Trigger: CTCATGAAAAGATGACACAGCGGAGGTCGTCCTTCAGCAGTCAGTCCATAAACTCCCAGTCAGTTGGTCCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS GCA 72 bp GGCAGAAGGAGTTGGGCTGTGATCAAACCTTTCCAGTaGTTCCTTGAGACTCACTGTGTTGATACGATTGTC +
Preference number: 6 (lower is better)
Translates to: GRRSWAVIKPFQ*FLETHCVDTIV
Trigger: GACAATCGTATCAACACAGTGAGTCTCAAGGAAGCACTGGAAAGGTTTGATCACAGCCCAACTCCTTCTGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS CAA 72 bp TCCACTCTGAACCTGGTTAGCAGGGACAACCTGGCCTaGCATATTTACAGGTGTGAGTTGCTGGATATTAGA +
Preference number: 6 (lower is better)
Translates to: STLNLVSRDNLA*HIYRCELLDIR
Trigger: TCTAATATCCAGCAACTCACACCTGTAAATATGCAAGGCCAGGTTGTCCCTGCTAACCAGGTTCAGAGTGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS TCA 72 bp TGTGGGTTTCCAGTCCTGTCGAATCTCACTAGCATCTaGCTGTGCAGTGGTCTCTTTATGTTTGCGCAAAAA +
Preference number: 6 (lower is better)
Translates to: CGFPVLSNLTSI*LCSGLFMFAQK
Trigger: TTTTTGCGCAAACATAAAGAGACCACTGCACAGTCAGATGCTAGTGAGATTCGACAGGACTGGAAACCCACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS CAA 90 bp GAGCTGAAAACTGAAACTGTGACATGCCTTGTGGAATTGGTAAATTaGCAGCTTGAGACATCGCTGGCTGTGTTAATGATGGACCAACTG +
Preference number: 6 (lower is better)
Translates to: ELKTETVTCLVELVN*QLETSLAVLMMDQL
Trigger: CAGTTGGTCCATCATTAACACAGCCAGCGATGTCTCAAGCTGCAAATTTACCAATTCCACAAGGCATGTCACAGTTTCAGTTTTCAGCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS CAA 72 bp TCAAACCTTTCCAGTGCTTCCTTGAGACTCACTGTGTaGATACGATTGTCAGACCCAGAATCTTGGCTTTTG +
Preference number: 6 (lower is better)
Translates to: SNLSSASLRLTV*IRLSDPESWLL
Trigger: CAAAAGCCAAGATTCTGGGTCTGACAATCGTATCAACACAGTGAGTCTCAAGGAAGCACTGGAAAGGTTTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS CAA 72 bp ACTGAAACTGTGACATGCCTTGTGGAATTGGTAAATTaGCAGCTTGAGACATCGCTGGCTGTGTTAATGATG +
Preference number: 6 (lower is better)
Translates to: TETVTCLVELVN*QLETSLAVLMM
Trigger: CATCATTAACACAGCCAGCGATGTCTCAAGCTGCAAATTTACCAATTCCACAAGGCATGTCACAGTTTCAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS CAA 72 bp TCACATATTCATAGGTGGATGGCTCCTTTGGGTCTATaGTTCCTCGAAGCATGTGACAACAGAATTCTAACT +
Preference number: 6 (lower is better)
Translates to: SHIHRWMAPLGL*FLEACDNRILT
Trigger: AGTTAGAATTCTGTTGTCACATGCTTCGAGGAACAATAGACCCAAAGGAGCCATCCACCTATGAATATGTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS CAA 90 bp AATTTCCAGAGGAAAGTTGAACAGAACCAAAATTCAATCCAGGGTTaGATTGCTGCAAAAACATCTGTAGCCCTTGACCATGGACCATCT +
Preference number: 6 (lower is better)
Translates to: NFQRKVEQNQNSIQG*IAAKTSVALDHGPS
Trigger: AGATGGTCCATGGTCAAGGGCTACAGATGTTTTTGCAGCAATCAAACCCTGGATTGAATTTTGGTTCTGTTCAACTTTCCTCTGGAAATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS CCA 72 bp TATAAATCTCACATATTCATAGGTGGATGGCTCCTTTaGGTCTATTGTTCCTCGAAGCATGTGACAACAGAA +
Preference number: 6 (lower is better)
Translates to: YKSHIFIGGWLL*VYCSSKHVTTE
Trigger: TTCTGTTGTCACATGCTTCGAGGAACAATAGACCCAAAGGAGCCATCCACCTATGAATATGTGAGATTTATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS CAA 72 bp AGGAAAGTTGAACAGAACCAAAATTCAATCCAGGGTTaGATTGCTGCAAAAACATCTGTAGCCCTTGACCAT +
Preference number: 6 (lower is better)
Translates to: RKVEQNQNSIQG*IAAKTSVALDH
Trigger: ATGGTCAAGGGCTACAGATGTTTTTGCAGCAATCAAACCCTGGATTGAATTTTGGTTCTGTTCAACTTTCCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS TCA 72 bp GTGAGTTGCTGGATATTAGAATTTCCAGAGGAAAGTTaGACAGAACCAAAATTCAATCCAGGGTTTGATTGC +
Preference number: 6 (lower is better)
Translates to: VSCWILEFPEES*TEPKFNPGFDC
Trigger: GCAATCAAACCCTGGATTGAATTTTGGTTCTGTTCAACTTTCCTCTGGAAATTCTAATATCCAGCAACTCAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS CAA 72 bp ATGTTCCCAAGACTTCAAATGGCAAATAGCCTATTATaGGTGGTGCCCTGTGATCTAAAAATAGAAACTTCC +
Preference number: 6 (lower is better)
Translates to: MFPRLQMANSLL*VVPCDLKIETS
Trigger: GGAAGTTTCTATTTTTAGATCACAGGGCACCACCAATAATAGGCTATTTGCCATTTGAAGTCTTGGGAACAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS CAA 72 bp TGCCTTTTCCATATTGCATTAAGTGCTCGTGACATTTaGCCAGATTTTCTAGGTCATCCACATGATAGTAAT +
Preference number: 6 (lower is better)
Translates to: CLFHIALSARDI*PDFLGHPHDSN
Trigger: ATTACTATCATGTGGATGACCTAGAAAATCTGGCAAAATGTCACGAGCACTTAATGCAATATGGAAAAGGCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4
CDS TCA 72 bp TTCCAGCAGATGAGTAGAGAGTATCTTATAAACCTCTaGATGTTCTCCCTCTGGGATAAAATTAAATATACT +
Preference number: 6 (lower is better)
Translates to: FQQMSREYLINL*MFSLWDKIKYT
Trigger: AGTATATTTAATTTTATCCCAGAGGGAGAACATTCAGAGGTTTATAAGATACTCTCTACTCATCTGCTGGAA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075159.5
ENSMUST00000202122.2
ENSMUST00000202651.4