Pregenerated sensors for CLNS1A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025439Ensembl transcript IDs: ENSMUST00000026506.5
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGTCAAGGACCTAACCTAGGAGAACATAACAGAGCTGATGGTACATaGAGAATAACAGAAGCTAGCACACAAGTATTGCGAGATGTGGCT | + |
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Preference number: 1 (lower is better) Translates to: SQGPNLGEHNRADGT*RITEASTQVLRDVA Trigger: AGCCACATCTCGCAATACTTGTGTGCTAGCTTCTGTTATTCTTCATGTACCATCAGCTCTGTTATGTTCTCCTAGGTTAGGTCCTTGACT 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026506.5 |
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| 3UTR-3UTR GCA 90 bp | GCAGACTTCATTTCAGATTATTTATTCTGTGACAGAAAGCGAACGTTAAGAGGGTTTGGAGAAGAAAAATaGCTTTCACCAGCCCCATTC | + |
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Preference number: 2 (lower is better) Translates to: ADFISDYLFCDRKRTLRGFGEEK*LSPAPF Trigger: GAATGGGGCTGGTGAAAGGCATTTTTCTTCTCCAAA...CCCTCTTAACGTTCGCTTTCTGTCACAGAATAAATAATCTGAAATGAAGTCTGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026506.5 |
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| 3UTR TCA 72 bp | CATGCCTCTGTGGAAAATGCTAGCGGCTGCTCCCTCTaGGGCCTCTGCTTTTTAATCTCAGGGATAAGAGTT | + |
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Preference number: 3 (lower is better) Translates to: HASVENASGCSL*GLCFLISGIRV Trigger: AACTCTTATCCCTGAGATTAAAAAGCAGAGGCCTCAGAGGGAGCAGCCGCTAGCATTTTCCACAGAGGCATG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026506.5 |
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| 3UTR-3UTR CAA 90 bp | GACTTCATTTCAGATTATTTATTCTGTGACAGAAAGCGAACGTTAAGAGGGTGGGCTAGCACACAAGTATaGCGAGATGTGGCTGAGCCC | + |
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Preference number: 3 (lower is better) Translates to: DFISDYLFCDRKRTLRGWASTQV*RDVAEP Trigger: GGGCTCAGCCACATCTCGCAATACTTGTGTGCTAGC...CCACCCTCTTAACGTTCGCTTTCTGTCACAGAATAAATAATCTGAAATGAAGTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026506.5 |
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| 3UTR TCA 72 bp | CCTAACCTAGGAGAACATAACAGAGCTGATGGTACATaGAGAATAACAGAAGCTAGCACACAAGTATTGCGA | + |
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Preference number: 3 (lower is better) Translates to: PNLGEHNRADGT*RITEASTQVLR Trigger: TCGCAATACTTGTGTGCTAGCTTCTGTTATTCTTCATGTACCATCAGCTCTGTTATGTTCTCCTAGGTTAGG 42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026506.5 |
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| CDS-3UTR GCA 90 bp | TGCCTTTCACCAGCCCCATTCTGGAGTGAAGAGGCACCACGTTCTTGCCTACAGTGTAAAGCGTGCCGGTaGCGAGCCCCTTCCCGTTCA | + |
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Preference number: 4 (lower is better) Translates to: CLSPAPFWSEEAPRSCLQCKACR*RAPSRS Trigger: TGAACGGGAAGGGGCTCGGCACCGGCACGCTTTACA...CTGTAGGCAAGAACGTGGTGCCTCTTCACTCCAGAATGGGGCTGGTGAAAGGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026506.5 |
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| CDS-3UTR GCA 90 bp | TGCCTTTCACCAGCCCCATTCTGGAGTGAAGAGGCACCACGTTCTTGCCTACAGCTGGCACTCACACATTaGTGTGAACATCGCCTCCAA | + |
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Preference number: 4 (lower is better) Translates to: CLSPAPFWSEEAPRSCLQLALTH*CEHRLQ Trigger: TTGGAGGCGATGTTCACAGCAATGTGTGAGTGCCAG...CTGTAGGCAAGAACGTGGTGCCTCTTCACTCCAGAATGGGGCTGGTGAAAGGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026506.5 |
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| CDS-3UTR CCA 90 bp | GCAGACTTCATTTCAGATTATTTATTCTGTGACAGAAAGCGAACGTTAAGAGGGCACAGCCTCGGTGTCTaGCTGCTGCAGCCGGAGCCC | + |
|
Preference number: 4 (lower is better) Translates to: ADFISDYLFCDRKRTLRGHSLGV*LLQPEP Trigger: GGGCTCCGGCTGCAGCAGCCAGACACCGAGGCTGTG...CCCTCTTAACGTTCGCTTTCTGTCACAGAATAAATAATCTGAAATGAAGTCTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026506.5 |
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| CDS-3UTR GCA 90 bp | GCAGACTTCATTTCAGATTATTTATTCTGTGACAGAAAGCGAACGTTAAGAGGGCCGCGATGTAAAGCGTaGCGGTGCCGAGCCCCTTCC | + |
|
Preference number: 4 (lower is better) Translates to: ADFISDYLFCDRKRTLRGPRCKA*RCRAPS Trigger: GGAAGGGGCTCGGCACCGGCACGCTTTACATCGCGG...CCCTCTTAACGTTCGCTTTCTGTCACAGAATAAATAATCTGAAATGAAGTCTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026506.5 |
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| CDS-3UTR GCA 90 bp | GAAAAATGCCTTTCACCAGCCCCATTCTGGAGTGAAGAGGCACCACGTTCTTGCTTGTCCTTGTTCATGTaGCTCCACATCATACTCCTC | + |
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Preference number: 4 (lower is better) Translates to: EKCLSPAPFWSEEAPRSCLSLFM*LHIILL Trigger: GAGGAGTATGATGTGGAGGCACATGAACAAGGACAA...GCAAGAACGTGGTGCCTCTTCACTCCAGAATGGGGCTGGTGAAAGGCATTTTTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026506.5 |
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| CDS-3UTR TCA 90 bp | GAAAAATGCCTTTCACCAGCCCCATTCTGGAGTGAAGAGGCACCACGTTCTTGCTTCATAATTTCTTACTaGGTCTTCTGTTCGGACGCC | + |
|
Preference number: 4 (lower is better) Translates to: EKCLSPAPFWSEEAPRSCFIISY*VFCSDA Trigger: GGCGTCCGAACAGAAGACTCAGTAAGAAATTATGAA...GCAAGAACGTGGTGCCTCTTCACTCCAGAATGGGGCTGGTGAAAGGCATTTTTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026506.5 |
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| CDS-3UTR CCA 90 bp | GCAGACTTCATTTCAGATTATTTATTCTGTGACAGAAAGCGAACGTTAAGAGGGTTCATCCTCAGGGTCTaGATGCAAGGCCTGGCACTC | + |
|
Preference number: 4 (lower is better) Translates to: ADFISDYLFCDRKRTLRGFILRV*MQGLAL Trigger: GAGTGCCAGGCCTTGCATCCAGACCCTGAGGATGAA...CCCTCTTAACGTTCGCTTTCTGTCACAGAATAAATAATCTGAAATGAAGTCTGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026506.5 |
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| CDS-3UTR TCA 90 bp | GACTTCATTTCAGATTATTTATTCTGTGACAGAAAGCGAACGTTAAGAGGGTGGACTCACACATTGCTGTaGACATCGCCTCCAATGCTG | + |
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Preference number: 4 (lower is better) Translates to: DFISDYLFCDRKRTLRGWTHTLL*TSPPML Trigger: CAGCATTGGAGGCGATGTTCACAGCAATGTGTGAGT...CCACCCTCTTAACGTTCGCTTTCTGTCACAGAATAAATAATCTGAAATGAAGTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026506.5 |
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| CDS-3UTR TCA 90 bp | GCAGACTTCATTTCAGATTATTTATTCTGTGACAGAAAGCGAACGTTAAGAGGGAGAGAGAGGTTCTTTTaGTTCTTCTCCAAGCTTGGC | + |
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Preference number: 4 (lower is better) Translates to: ADFISDYLFCDRKRTLRGRERFF*FFSKLG Trigger: GCCAAGCTTGGAGAAGAATCAAAAGAACCTCTCTCT...CCCTCTTAACGTTCGCTTTCTGTCACAGAATAAATAATCTGAAATGAAGTCTGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026506.5 |
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| CDS-3UTR CAA 90 bp | AGAATAACAGAAGCTAGCACACAAGTATTGCGAGATGTGGCTGAGCCCCAAGTAGGCGGCGGGAAGCTTTaGAGGAAGCTCATTGCCGGG | + |
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Preference number: 5 (lower is better) Translates to: RITEASTQVLRDVAEPQVGGGKL*RKLIAG Trigger: CCCGGCAATGAGCTTCCTCAAAAGCTTCCCGCCGCC...TACTTGGGGCTCAGCCACATCTCGCAATACTTGTGTGCTAGCTTCTGTTATTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026506.5 |
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| CDS-3UTR CAA 90 bp | GAAAAATGCCTTTCACCAGCCCCATTCTGGAGTGAAGAGGCACCACGTTCTTGCAACATACAAATGCTCTaGAGGGTAAGCGTTTGGATC | + |
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Preference number: 5 (lower is better) Translates to: EKCLSPAPFWSEEAPRSCNIQML*RVSVWI Trigger: GATCCAAACGCTTACCCTCAAGAGCATTTGTATGTT...GCAAGAACGTGGTGCCTCTTCACTCCAGAATGGGGCTGGTGAAAGGCATTTTTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026506.5 |
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