Pregenerated sensors for CLN6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032245Ensembl transcript IDs: ENSMUST00000034776.13, ENSMUST00000124984.2, ENSMUST00000138276.2, ENSMUST00000141821.2
Found 100 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GCCTTCCATGTAGCTCAGAACCCAGGCCAGCTTAGAGAGCTTAGCTaGGAGAGACTGGGAGTGGGGGCCTCTGGCTCCCTGGAGACTGGG | + |
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Preference number: 1 (lower is better) Translates to: AFHVAQNPGQLRELS*ERLGVGASGSLETG Trigger: CCCAGTCTCCAGGGAGCCAGAGGCCCCCACTCCCAGTCTCTCTCAGCTAAGCTCTCTAAGCTGGCCTGGGTTCTGAGCTACATGGAAGGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034776.13 |
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| 3UTR CCA 90 bp | CTTGTGCCAAGGAGACCTATATCTGAGGCCTGGGAGGAAGTGGGCTaGGGAGGAGCCACCATGCTGGGAACAAAGGCACCAGGCAGGTGG | + |
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Preference number: 1 (lower is better) Translates to: LVPRRPISEAWEEVG*GGATMLGTKAPGRW Trigger: CCACCTGCCTGGTGCCTTTGTTCCCAGCATGGTGGCTCCTCCCCAGCCCACTTCCTCCCAGGCCTCAGATATAGGTCTCCTTGGCACAAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034776.13 |
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| 3UTR CCA 90 bp | ATGAGGTGGTGGCGCCTTGTGCCAAGGAGACCTATATCTGAGGCCTaGGAGGAAGTGGGCTGGGGAGGAGCCACCATGCTGGGAACAAAG | + |
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Preference number: 1 (lower is better) Translates to: MRWWRLVPRRPISEA*EEVGWGGATMLGTK Trigger: CTTTGTTCCCAGCATGGTGGCTCCTCCCCAGCCCACTTCCTCCCAGGCCTCAGATATAGGTCTCCTTGGCACAAGGCGCCACCACCTCAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034776.13 |
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| 3UTR CCA 90 bp | TACAGACCACTGGGCACCACCAGGAGCAGGGCAGGTCCTGGCATGTaGCTCTCAGCCTTGCAGGTGGTGAAACAGCCACTGAAGTACATG | + |
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Preference number: 1 (lower is better) Translates to: YRPLGTTRSRAGPGM*LSALQVVKQPLKYM Trigger: CATGTACTTCAGTGGCTGTTTCACCACCTGCAAGGCTGAGAGCCACATGCCAGGACCTGCCCTGCTCCTGGTGGTGCCCAGTGGTCTGTA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138276.2 |
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| 3UTR GCA 90 bp | TGGAAGGGGGCTGTGCGGTCTTTGTCCTCGGCCTTCACAGAGCCATaGCTTATAGCACTCAGGAGGCAGAGGCAGGTGGATCTCCAAGTT | + |
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Preference number: 1 (lower is better) Translates to: WKGAVRSLSSAFTEP*LIALRRQRQVDLQV Trigger: AACTTGGAGATCCACCTGCCTCTGCCTCCTGAGTGCTATAAGGCATGGCTCTGTGAAGGCCGAGGACAAAGACCGCACAGCCCCCTTCCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000141821.2 |
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| 3UTR TCA 90 bp | GCATGGCAATGGGGCGGCCAAAGTCCAGAACCCAGTTCTGCAGTGTaGAGTAGAACCAGAGGTCAAGATGGAAGGGGGCTGTGCGGTCTT | + |
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Preference number: 1 (lower is better) Translates to: AWQWGGQSPEPSSAV*SRTRGQDGRGLCGL Trigger: AAGACCGCACAGCCCCCTTCCATCTTGACCTCTGGTTCTACTTCACACTGCAGAACTGGGTTCTGGACTTTGGCCGCCCCATTGCCATGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000141821.2 |
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| 3UTR TCA 90 bp | TGGGGAGGAGCCACCATGCTGGGAACAAAGGCACCAGGCAGGTGGTaGGAGATTCAGGCTGAGATGTGCTGTCTCAAGAGTCTGACTTGT | + |
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Preference number: 1 (lower is better) Translates to: WGGATMLGTKAPGRW*EIQAEMCCLKSLTC Trigger: ACAAGTCAGACTCTTGAGACAGCACATCTCAGCCTGAATCTCTCACCACCTGCCTGGTGCCTTTGTTCCCAGCATGGTGGCTCCTCCCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034776.13 |
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| 3UTR GCA 90 bp | GGCTTGAGGTTCTTGATAATGGGGTTCTCTCTGACGGACAGGTGGTaGTGGTACCCACTGAAGAGCAGGCGATGGTTGACTGAGTCTCCC | + |
|
Preference number: 1 (lower is better) Translates to: GLRFLIMGFSLTDRW*WYPLKSRRWLTESP Trigger: GGGAGACTCAGTCAACCATCGCCTGCTCTTCAGTGGGTACCAGCACCACCTGTCCGTCAGAGAGAACCCCATTATCAAGAACCTCAAGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138276.2 |
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| 3UTR CCA 90 bp | GAGGCAAAGTCCCTGAGAACAGCAGAAAAGAGGCAGGGCCATGCATaGAGTGTCTCCAAGACTCACAGCACAGGTCAGTCAGTGCTGGCT | + |
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Preference number: 1 (lower is better) Translates to: EAKSLRTAEKRQGHA*SVSKTHSTGQSVLA Trigger: AGCCAGCACTGACTGACCTGTGCTGTGAGTCTTGGAGACACTCCATGCATGGCCCTGCCTCTTTTCTGCTGTTCTCAGGGACTTTGCCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034776.13 |
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| 3UTR CCA 90 bp | TTGAGGTTCTTGATAATGGGGTTCTCTCTGACGGACAGGTGGTGCTaGTACCCACTGAAGAGCAGGCGATGGTTGACTGAGTCTCCCACC | + |
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Preference number: 1 (lower is better) Translates to: LRFLIMGFSLTDRWC*YPLKSRRWLTESPT Trigger: GGTGGGAGACTCAGTCAACCATCGCCTGCTCTTCAGTGGGTACCAGCACCACCTGTCCGTCAGAGAGAACCCCATTATCAAGAACCTCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138276.2 |
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| 3UTR CCA 90 bp | TCCGGCTTGAGGTTCTTGATAATGGGGTTCTCTCTGACGGACAGGTaGTGCTGGTACCCACTGAAGAGCAGGCGATGGTTGACTGAGTCT | + |
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Preference number: 1 (lower is better) Translates to: SGLRFLIMGFSLTDR*CWYPLKSRRWLTES Trigger: AGACTCAGTCAACCATCGCCTGCTCTTCAGTGGGTACCAGCACCACCTGTCCGTCAGAGAGAACCCCATTATCAAGAACCTCAAGCCGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138276.2 |
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| 3UTR TCA 90 bp | CATGCTGGGAACAAAGGCACCAGGCAGGTGGTGAGAGATTCAGGCTaGGATGTGCTGTCTCAAGAGTCTGACTTGTATTGTCTCAGACCC | + |
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Preference number: 1 (lower is better) Translates to: HAGNKGTRQVVRDSG*DVLSQESDLYCLRP Trigger: GGGTCTGAGACAATACAAGTCAGACTCTTGAGACAGCACATCTCAGCCTGAATCTCTCACCACCTGCCTGGTGCCTTTGTTCCCAGCATG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034776.13 |
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| 3UTR TCA 90 bp | GCAGGTGGTGAGAGATTCAGGCTGAGATGTGCTGTCTCAAGAGTCTaGCTTGTATTGTCTCAGACCCTTACAAGGGGTTTCGGGGGAAAC | + |
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Preference number: 1 (lower is better) Translates to: AGGERFRLRCAVSRV*LVLSQTLTRGFGGN Trigger: GTTTCCCCCGAAACCCCTTGTAAGGGTCTGAGACAATACAAGTCAGACTCTTGAGACAGCACATCTCAGCCTGAATCTCTCACCACCTGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034776.13 |
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| 3UTR GCA 90 bp | CAGTTGAGTCTCTCAACAGCACACTCTGTCCATCCCTGCCACCAGTaGATAGTTCACATTACCACGGTGCATGTATGCACACATGTACAA | + |
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Preference number: 1 (lower is better) Translates to: QLSLSTAHSVHPCHQ*IVHITTVHVCTHVQ Trigger: TTGTACATGTGTGCATACATGCACCGTGGTAATGTGAACTATGCACTGGTGGCAGGGATGGACAGAGTGTGCTGTTGAGAGACTCAACTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034776.13 ENSMUST00000124984.2 |
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| 3UTR-3UTR TCA 90 bp | ACAGACCACTGGGCACCACCAGGAGCAGGGCAGGTCCTGGCATGTGGCTCTCAGCAGGCGATGGTTGACTaGGTCTCCCACCAGGTGGAT | + |
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Preference number: 2 (lower is better) Translates to: TDHWAPPGAGQVLACGSQQAMVD*VSHQVD Trigger: ATCCACCTGGTGGGAGACTCAGTCAACCATCGCCTG...CTGAGAGCCACATGCCAGGACCTGCCCTGCTCCTGGTGGTGCCCAGTGGTCTGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138276.2 |
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| 3UTR CAA 90 bp | GGCACCACCAGGAGCAGGGCAGGTCCTGGCATGTGGCTCTCAGCCTaGCAGGTGGTGAAACAGCCACTGAAGTACATGAAGAGGATGAGG | + |
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Preference number: 2 (lower is better) Translates to: GTTRSRAGPGMWLSA*QVVKQPLKYMKRMR Trigger: CCTCATCCTCTTCATGTACTTCAGTGGCTGTTTCACCACCTGCAAGGCTGAGAGCCACATGCCAGGACCTGCCCTGCTCCTGGTGGTGCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138276.2 |
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| 3UTR-3UTR CCA 90 bp | GAGAGGAAACCACTGGATCGGGAATACCAGCATGGCAATGGGGCGGCCAAAGTCGGAGGCAGAGGCAGGTaGATCTCCAAGTTTGAGGCC | + |
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Preference number: 2 (lower is better) Translates to: ERKPLDREYQHGNGAAKVGGRGR*ISKFEA Trigger: GGCCTCAAACTTGGAGATCCACCTGCCTCTGCCTCC...GACTTTGGCCGCCCCATTGCCATGCTGGTATTCCCGATCCAGTGGTTTCCTCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000141821.2 |
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| 3UTR-3UTR CCA 90 bp | CCTGGCATGTGGCTCTCAGCCTTGCAGGTGGTGAAACAGCCACTGAAGTACATGCTGAAGAGCAGGCGATaGTTGACTGAGTCTCCCACC | + |
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Preference number: 2 (lower is better) Translates to: PGMWLSALQVVKQPLKYMLKSRR*LTESPT Trigger: GGTGGGAGACTCAGTCAACCATCGCCTGCTCTTCAG...CATGTACTTCAGTGGCTGTTTCACCACCTGCAAGGCTGAGAGCCACATGCCAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138276.2 |
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| 3UTR-3UTR TCA 90 bp | GAGAGGAAACCACTGGATCGGGAATACCAGCATGGCAATGGGGCGGCCAAAGTCCCCAGTTCTGCAGTGTaGAGTAGAACCAGAGGTCAA | + |
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Preference number: 2 (lower is better) Translates to: ERKPLDREYQHGNGAAKVPSSAV*SRTRGQ Trigger: TTGACCTCTGGTTCTACTTCACACTGCAGAACTGGG...GACTTTGGCCGCCCCATTGCCATGCTGGTATTCCCGATCCAGTGGTTTCCTCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000141821.2 |
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| 3UTR-3UTR TCA 90 bp | CTCAAAGGAGTCGATCAGAGTCTCCGGCTTGAGGTTCTTGATAATGGGGTTCTCAGAGCAGGCGATGGTTaGCTGAGTCTCCCACCAGGT | + |
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Preference number: 2 (lower is better) Translates to: LKGVDQSLRLEVLDNGVLRAGDG*LSLPPG Trigger: ACCTGGTGGGAGACTCAGTCAACCATCGCCTGCTCT...GAGAACCCCATTATCAAGAACCTCAAGCCGGAGACTCTGATCGACTCCTTTGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138276.2 |
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| 3UTR-3UTR GCA 90 bp | CTGCAGTGTGAAGTAGAACCAGAGGTCAAGATGGAAGGGGGCTGTGCGGTCTTTGCCTTCACAGAGCCATaGCTTATAGCACTCAGGAGG | + |
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Preference number: 2 (lower is better) Translates to: LQCEVEPEVKMEGGCAVFAFTEP*LIALRR Trigger: CCTCCTGAGTGCTATAAGGCATGGCTCTGTGAAGGC...AAAGACCGCACAGCCCCCTTCCATCTTGACCTCTGGTTCTACTTCACACTGCAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000141821.2 |
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| 3UTR-3UTR CCA 90 bp | CTCCCTAAGGGAATCAGCAACCACCAGTCCCCAGAGCCACATAAACTATGGAGCCATGTACAAACACCATaGCCTGGTGCCCCCAGTAAG | + |
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Preference number: 2 (lower is better) Translates to: LPKGISNHQSPEPHKLWSHVQTP*PGAPSK Trigger: CTTACTGGGGGCACCAGGCCATGGTGTTTGTACATG...GCTCCATAGTTTATGTGGCTCTGGGGACTGGTGGTTGCTGATTCCCTTAGGGAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034776.13 |
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| 3UTR-3UTR CCA 90 bp | ACAGCACACTCTGTCCATCCCTGCCACCAGTGCATAGTTCACATTACCACGGTGCATGTACAAACACCATaGCCTGGTGCCCCCAGTAAG | + |
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Preference number: 2 (lower is better) Translates to: TAHSVHPCHQCIVHITTVHVQTP*PGAPSK Trigger: CTTACTGGGGGCACCAGGCCATGGTGTTTGTACATG...CACCGTGGTAATGTGAACTATGCACTGGTGGCAGGGATGGACAGAGTGTGCTGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034776.13 ENSMUST00000124984.2 |
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| 3UTR-3UTR CCA 90 bp | AAGGAGTCGATCAGAGTCTCCGGCTTGAGGTTCTTGATAATGGGGTTCTCTCTGACGGACAGGTGGTGCTaGTACCCACTGAAGAGCAGG | + |
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Preference number: 2 (lower is better) Translates to: KESIRVSGLRFLIMGFSLTDRWC*YPLKSR Trigger: CCTGCTCTTCAGTGGGTACCAGCACCACCTGTCCGT...CAGAGAGAACCCCATTATCAAGAACCTCAAGCCGGAGACTCTGATCGACTCCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138276.2 |
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| 3UTR-3UTR CCA 90 bp | ACTTGGCTTGTTGAGAGGAAACCACTGGATCGGGAATACCAGCATGGCAATGGGAACCAGAGGTCAAGATaGAAGGGGGCTGTGCGGTCT | + |
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Preference number: 2 (lower is better) Translates to: TWLVERKPLDREYQHGNGNQRSR*KGAVRS Trigger: AGACCGCACAGCCCCCTTCCATCTTGACCTCTGGTT...CCCATTGCCATGCTGGTATTCCCGATCCAGTGGTTTCCTCTCAACAAGCCAAGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000141821.2 |
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| 3UTR CAA 90 bp | TACAACAGCTCAAAGGAGTCGATCAGAGTCTCCGGCTTGAGGTTCTaGATAATGGGGTTCTCTCTGACGGACAGGTGGTGCTGGTACCCA | + |
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Preference number: 2 (lower is better) Translates to: YNSSKESIRVSGLRF*IMGFSLTDRWCWYP Trigger: TGGGTACCAGCACCACCTGTCCGTCAGAGAGAACCCCATTATCAAGAACCTCAAGCCGGAGACTCTGATCGACTCCTTTGAGCTGTTGTA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138276.2 |
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| 3UTR-3UTR TCA 90 bp | AGCCCAGAGATGGAACTGCTCTGTTTAAAGCACAAAAGAAGTTGTGACCCAGAAAGGCCAGCCCAGTCCTaGGAGATAGGGGTGTTATTC | + |
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Preference number: 2 (lower is better) Translates to: SPEMELLCLKHKRSCDPERPAQS*EIGVLF Trigger: GAATAACACCCCTATCTCTCAGGACTGGGCTGGCCT...TTCTGGGTCACAACTTCTTTTGTGCTTTAAACAGAGCAGTTCCATCTCTGGGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034776.13 |
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| 3UTR-3UTR GCA 90 bp | ATTCAGGCACCTCTAATAGTAATGAAATACAGGGGAGGGCAGGGGCCGGGATCTACCACGGTGCATGTATaGACACATGTACAAACACCA | + |
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Preference number: 2 (lower is better) Translates to: IQAPLIVMKYRGGQGPGSTTVHV*THVQTP Trigger: TGGTGTTTGTACATGTGTGCATACATGCACCGTGGT...AGATCCCGGCCCCTGCCCTCCCCTGTATTTCATTACTATTAGAGGTGCCTGAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034776.13 ENSMUST00000124984.2 |
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| 3UTR-3UTR GCA 90 bp | TGTTATTCAGGCACCTCTAATAGTAATGAAATACAGGGGAGGGCAGGGGCCGGGACCACGGTGCATGTATaGACACATGTACAAACACCA | + |
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Preference number: 2 (lower is better) Translates to: CYSGTSNSNEIQGRAGAGTTVHV*THVQTP Trigger: TGGTGTTTGTACATGTGTGCATACATGCACCGTGGT...CCCGGCCCCTGCCCTCCCCTGTATTTCATTACTATTAGAGGTGCCTGAATAACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034776.13 ENSMUST00000124984.2 |
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| 3UTR-3UTR TCA 90 bp | CTAATAGTAATGAAATACAGGGGAGGGCAGGGGCCGGGATCTTGGCCTTCATATAACAAACTCAGAACCTaGCCAGAACAGTTGAGTCTC | + |
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Preference number: 2 (lower is better) Translates to: LIVMKYRGGQGPGSWPSYNKLRT*PEQLSL Trigger: GAGACTCAACTGTTCTGGTCAGGTTCTGAGTTTGTT...ATATGAAGGCCAAGATCCCGGCCCCTGCCCTCCCCTGTATTTCATTACTATTAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034776.13 ENSMUST00000124984.2 |
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| 3UTR-3UTR GCA 90 bp | AGCCCAGAGATGGAACTGCTCTGTTTAAAGCACAAAAGAAGTTGTGACCCAGAATTCACATTACCACGGTaGATGTATGCACACATGTAC | + |
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Preference number: 2 (lower is better) Translates to: SPEMELLCLKHKRSCDPEFTLPR*MYAHMY Trigger: GTACATGTGTGCATACATGCACCGTGGTAATGTGAA...TTCTGGGTCACAACTTCTTTTGTGCTTTAAACAGAGCAGTTCCATCTCTGGGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034776.13 |
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| 3UTR CCA 72 bp | ACCCAGGCCAGCTTAGAGAGCTTAGCTGAGAGAGACTaGGAGTGGGGGCCTCTGGCTCCCTGGAGACTGGGT | + |
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Preference number: 3 (lower is better) Translates to: TQASLESLAERD*EWGPLAPWRLG Trigger: ACCCAGTCTCCAGGGAGCCAGAGGCCCCCACTCCCAGTCTCTCTCAGCTAAGCTCTCTAAGCTGGCCTGGGT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034776.13 |
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| 3UTR TCA 72 bp | GTGCTGGTACCCACTGAAGAGCAGGCGATGGTTGACTaGGTCTCCCACCAGGTGGATGCTGGCTCCCATGAT | + |
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Preference number: 3 (lower is better) Translates to: VLVPTEEQAMVD*VSHQVDAGSHD Trigger: ATCATGGGAGCCAGCATCCACCTGGTGGGAGACTCAGTCAACCATCGCCTGCTCTTCAGTGGGTACCAGCAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138276.2 |
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| 3UTR GCA 72 bp | GCTGTGCGGTCTTTGTCCTCGGCCTTCACAGAGCCATaGCTTATAGCACTCAGGAGGCAGAGGCAGGTGGAT | + |
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Preference number: 3 (lower is better) Translates to: AVRSLSSAFTEP*LIALRRQRQVD Trigger: ATCCACCTGCCTCTGCCTCCTGAGTGCTATAAGGCATGGCTCTGTGAAGGCCGAGGACAAAGACCGCACAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000141821.2 |
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| 3UTR CCA 72 bp | CACAGGTCAGTCAGTGCTGGCTGCCAAATGAGGTGGTaGCGCCTTGTGCCAAGGAGACCTATATCTGAGGCC | + |
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Preference number: 3 (lower is better) Translates to: HRSVSAGCQMRW*RLVPRRPISEA Trigger: GGCCTCAGATATAGGTCTCCTTGGCACAAGGCGCCACCACCTCATTTGGCAGCCAGCACTGACTGACCTGTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034776.13 |
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| 3UTR-3UTR CAA 90 bp | GTACCAGTAGTACAGACCACTGGGCACCACCAGGAGCAGGGCAGGTCCTGGCATTCCGGCTTGAGGTTCTaGATAATGGGGTTCTCTCTG | + |
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Preference number: 3 (lower is better) Translates to: VPVVQTTGHHQEQGRSWHSGLRF*IMGFSL Trigger: CAGAGAGAACCCCATTATCAAGAACCTCAAGCCGGA...ATGCCAGGACCTGCCCTGCTCCTGGTGGTGCCCAGTGGTCTGTACTACTGGTAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138276.2 |
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| 3UTR TCA 72 bp | TGGGGCGGCCAAAGTCCAGAACCCAGTTCTGCAGTGTaGAGTAGAACCAGAGGTCAAGATGGAAGGGGGCTG | + |
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Preference number: 3 (lower is better) Translates to: WGGQSPEPSSAV*SRTRGQDGRGL Trigger: CAGCCCCCTTCCATCTTGACCTCTGGTTCTACTTCACACTGCAGAACTGGGTTCTGGACTTTGGCCGCCCCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000141821.2 |
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| 3UTR CCA 72 bp | CAGCACAGGTCAGTCAGTGCTGGCTGCCAAATGAGGTaGTGGCGCCTTGTGCCAAGGAGACCTATATCTGAG | + |
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Preference number: 3 (lower is better) Translates to: QHRSVSAGCQMR*WRLVPRRPISE Trigger: CTCAGATATAGGTCTCCTTGGCACAAGGCGCCACCACCTCATTTGGCAGCCAGCACTGACTGACCTGTGCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034776.13 |
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| 3UTR CCA 72 bp | GAGGAAACCACTGGATCGGGAATACCAGCATGGCAATaGGGCGGCCAAAGTCCAGAACCCAGTTCTGCAGTG | + |
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Preference number: 3 (lower is better) Translates to: EETTGSGIPAWQ*GGQSPEPSSAV Trigger: CACTGCAGAACTGGGTTCTGGACTTTGGCCGCCCCATTGCCATGCTGGTATTCCCGATCCAGTGGTTTCCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000141821.2 |
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| 3UTR TCA 72 bp | ACTCACAGCACAGGTCAGTCAGTGCTGGCTGCCAAATaGGGTGGTGGCGCCTTGTGCCAAGGAGACCTATAT | + |
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Preference number: 3 (lower is better) Translates to: THSTGQSVLAAK*GGGALCQGDLY Trigger: ATATAGGTCTCCTTGGCACAAGGCGCCACCACCTCATTTGGCAGCCAGCACTGACTGACCTGTGCTGTGAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034776.13 |
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| 3UTR CCA 72 bp | AAGAGCAGGCGATGGTTGACTGAGTCTCCCACCAGGTaGATGCTGGCTCCCATGATGAAAGTGATGATGCTG | + |
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Preference number: 3 (lower is better) Translates to: KSRRWLTESPTR*MLAPMMKVMML Trigger: CAGCATCATCACTTTCATCATGGGAGCCAGCATCCACCTGGTGGGAGACTCAGTCAACCATCGCCTGCTCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138276.2 |
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| 3UTR CCA 72 bp | TTGATAATGGGGTTCTCTCTGACGGACAGGTGGTGCTaGTACCCACTGAAGAGCAGGCGATGGTTGACTGAG | + |
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Preference number: 3 (lower is better) Translates to: LIMGFSLTDRWC*YPLKSRRWLTE Trigger: CTCAGTCAACCATCGCCTGCTCTTCAGTGGGTACCAGCACCACCTGTCCGTCAGAGAGAACCCCATTATCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138276.2 |
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| 3UTR-3UTR CAA 90 bp | CCTGGCATGTGGCTCTCAGCCTTGCAGGTGGTGAAACAGCCACTGAAGTACATGATCAGAGTCTCCGGCTaGAGGTTCTTGATAATGGGG | + |
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Preference number: 3 (lower is better) Translates to: PGMWLSALQVVKQPLKYMIRVSG*RFLIMG Trigger: CCCCATTATCAAGAACCTCAAGCCGGAGACTCTGAT...CATGTACTTCAGTGGCTGTTTCACCACCTGCAAGGCTGAGAGCCACATGCCAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138276.2 |
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| 3UTR GCA 72 bp | CACCAGTGCATAGTTCACATTACCACGGTGCATGTATaGACACATGTACAAACACCATGGCCTGGTGCCCCC | + |
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Preference number: 3 (lower is better) Translates to: HQCIVHITTVHV*THVQTPWPGAP Trigger: GGGGGCACCAGGCCATGGTGTTTGTACATGTGTGCATACATGCACCGTGGTAATGTGAACTATGCACTGGTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034776.13 ENSMUST00000124984.2 |
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| 3UTR GCA 72 bp | AAAGTCCCTGAGAACAGCAGAAAAGAGGCAGGGCCATaGATGGAGTGTCTCCAAGACTCACAGCACAGGTCA | + |
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Preference number: 3 (lower is better) Translates to: KVPENSRKEAGP*MECLQDSQHRS Trigger: TGACCTGTGCTGTGAGTCTTGGAGACACTCCATGCATGGCCCTGCCTCTTTTCTGCTGTTCTCAGGGACTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034776.13 |
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| 3UTR GCA 72 bp | TTCTTGATAATGGGGTTCTCTCTGACGGACAGGTGGTaGTGGTACCCACTGAAGAGCAGGCGATGGTTGACT | + |
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Preference number: 3 (lower is better) Translates to: FLIMGFSLTDRW*WYPLKSRRWLT Trigger: AGTCAACCATCGCCTGCTCTTCAGTGGGTACCAGCACCACCTGTCCGTCAGAGAGAACCCCATTATCAAGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138276.2 |
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| 3UTR CCA 72 bp | GGCTCCCTGGAGACTGGGTTCTCAACAGCATATAAATaGGGTGTGAAGTTGGACAAGAGGCTGGGAGAAACA | + |
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Preference number: 3 (lower is better) Translates to: GSLETGFSTAYK*GVKLDKRLGET Trigger: TGTTTCTCCCAGCCTCTTGTCCAACTTCACACCCCATTTATATGCTGTTGAGAACCCAGTCTCCAGGGAGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034776.13 |
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| 3UTR TCA 72 bp | CATGGGCTAACCCACAGAAAGATCACAAGGGGAAACTaGGGCAAAGTCCCTGAGAACAGCAGAAAAGAGGCA | + |
|
Preference number: 3 (lower is better) Translates to: HGLTHRKITRGN*GKVPENSRKEA Trigger: TGCCTCTTTTCTGCTGTTCTCAGGGACTTTGCCTCAGTTTCCCCTTGTGATCTTTCTGTGGGTTAGCCCATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034776.13 |
||
| 3UTR TCA 72 bp | AACAAAGGCACCAGGCAGGTGGTGAGAGATTCAGGCTaGGATGTGCTGTCTCAAGAGTCTGACTTGTATTGT | + |
|
Preference number: 3 (lower is better) Translates to: NKGTRQVVRDSG*DVLSQESDLYC Trigger: ACAATACAAGTCAGACTCTTGAGACAGCACATCTCAGCCTGAATCTCTCACCACCTGCCTGGTGCCTTTGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034776.13 |
||
| 3UTR TCA 72 bp | GAGAGATTCAGGCTGAGATGTGCTGTCTCAAGAGTCTaGCTTGTATTGTCTCAGACCCTTACAAGGGGTTTC | + |
|
Preference number: 3 (lower is better) Translates to: ERFRLRCAVSRV*LVLSQTLTRGF Trigger: GAAACCCCTTGTAAGGGTCTGAGACAATACAAGTCAGACTCTTGAGACAGCACATCTCAGCCTGAATCTCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034776.13 |
||
| CDS-3UTR GCA 90 bp | GTGGGGGCCTCTGGCTCCCTGGAGACTGGGTTCTCAACAGCATATAAATGGGGTCCAGGAAGAGGCGCCTaGGCTTCTGGTGCAAGACGA | + |
|
Preference number: 4 (lower is better) Translates to: VGASGSLETGFSTAYKWGPGRGA*ASGARR Trigger: TCGTCTTGCACCAGAAGCGCAGGCGCCTCTTCCTGG...ACCCCATTTATATGCTGTTGAGAACCCAGTCTCCAGGGAGCCAGAGGCCCCCAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034776.13 |
||
| CDS-3UTR CCA 90 bp | GCACACTCTGTCCATCCCTGCCACCAGTGCATAGTTCACATTACCACGGTGCATACAGCTTCACACGCCTaGCCAGGGGCTGTCCCCACC | + |
|
Preference number: 4 (lower is better) Translates to: AHSVHPCHQCIVHITTVHTASHA*PGAVPT Trigger: GGTGGGGACAGCCCCTGGCCAGGCGTGTGAAGCTGT...ATGCACCGTGGTAATGTGAACTATGCACTGGTGGCAGGGATGGACAGAGTGTGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000124984.2 |
||
| CDS-3UTR TCA 90 bp | GCACCTCTAATAGTAATGAAATACAGGGGAGGGCAGGGGCCGGGATCTTGGCCTCAGGCGATGGTTGACTaGGTCTCCCACCAGGTGGAT | + |
|
Preference number: 4 (lower is better) Translates to: APLIVMKYRGGQGPGSWPQAMVD*VSHQVD Trigger: ATCCACCTGGTGGGAGACTCAGTCAACCATCGCCTG...AGGCCAAGATCCCGGCCCCTGCCCTCCCCTGTATTTCATTACTATTAGAGGTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034776.13 ENSMUST00000124984.2 |
||
| CDS-3UTR TCA 90 bp | GTGGGGGCCTCTGGCTCCCTGGAGACTGGGTTCTCAACAGCATATAAATGGGGTAGATCTGGCCCTCGGTaGCCAGGTACCAGTAGTACA | + |
|
Preference number: 4 (lower is better) Translates to: VGASGSLETGFSTAYKWGRSGPR*PGTSST Trigger: TGTACTACTGGTACCTGGTCACCGAGGGCCAGATCT...ACCCCATTTATATGCTGTTGAGAACCCAGTCTCCAGGGAGCCAGAGGCCCCCAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034776.13 |
||
| CDS-3UTR GCA 90 bp | CACCCGCTTGTCACCAGAAGATATCTCCATAAGGCCAGCCCAGTCCTGAGAGATCGCCTGCGCTTCTGGTaGAAGACGAGAGCCAGCATG | + |
|
Preference number: 4 (lower is better) Translates to: HPLVTRRYLHKASPVLRDRLRFW*KTRASM Trigger: CATGCTGGCTCTCGTCTTGCACCAGAAGCGCAGGCG...ATCTCTCAGGACTGGGCTGGCCTTATGGAGATATCTTCTGGTGACAAGCGGGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034776.13 |
||
| CDS-3UTR CCA 90 bp | GCACCTCTAATAGTAATGAAATACAGGGGAGGGCAGGGGCCGGGATCTTGGCCTAGTAGTACAGACCACTaGGCACCACCAGGAGCAGGG | + |
|
Preference number: 4 (lower is better) Translates to: APLIVMKYRGGQGPGSWPSSTDH*APPGAG Trigger: CCCTGCTCCTGGTGGTGCCCAGTGGTCTGTACTACT...AGGCCAAGATCCCGGCCCCTGCCCTCCCCTGTATTTCATTACTATTAGAGGTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034776.13 |
||
| 3UTR CAA 72 bp | AGGAGCAGGGCAGGTCCTGGCATGTGGCTCTCAGCCTaGCAGGTGGTGAAACAGCCACTGAAGTACATGAAG | + |
|
Preference number: 4 (lower is better) Translates to: RSRAGPGMWLSA*QVVKQPLKYMK Trigger: CTTCATGTACTTCAGTGGCTGTTTCACCACCTGCAAGGCTGAGAGCCACATGCCAGGACCTGCCCTGCTCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138276.2 |
||
| CDS-3UTR TCA 90 bp | GCACACTCTGTCCATCCCTGCCACCAGTGCATAGTTCACATTACCACGGTGCATAGAGCAGGCGATGGTTaGCTGAGTCTCCCACCAGGT | + |
|
Preference number: 4 (lower is better) Translates to: AHSVHPCHQCIVHITTVHRAGDG*LSLPPG Trigger: ACCTGGTGGGAGACTCAGTCAACCATCGCCTGCTCT...ATGCACCGTGGTAATGTGAACTATGCACTGGTGGCAGGGATGGACAGAGTGTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034776.13 ENSMUST00000124984.2 |
||
| CDS-3UTR GCA 90 bp | TTGAGTCTCTCAACAGCACACTCTGTCCATCCCTGCCACCAGTGCATAGTTCACCGCCTGCGCTTCTGGTaGAAGACGAGAGCCAGCATG | + |
|
Preference number: 4 (lower is better) Translates to: LSLSTAHSVHPCHQCIVHRLRFW*KTRASM Trigger: CATGCTGGCTCTCGTCTTGCACCAGAAGCGCAGGCG...GTGAACTATGCACTGGTGGCAGGGATGGACAGAGTGTGCTGTTGAGAGACTCAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034776.13 ENSMUST00000124984.2 |
||
| CDS-3UTR GCA 90 bp | TTGAGTCTCTCAACAGCACACTCTGTCCATCCCTGCCACCAGTGCATAGTTCACCCAGGAAGAGGCGCCTaGGCTTCTGGTGCAAGACGA | + |
|
Preference number: 4 (lower is better) Translates to: LSLSTAHSVHPCHQCIVHPGRGA*ASGARR Trigger: TCGTCTTGCACCAGAAGCGCAGGCGCCTCTTCCTGG...GTGAACTATGCACTGGTGGCAGGGATGGACAGAGTGTGCTGTTGAGAGACTCAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034776.13 ENSMUST00000124984.2 |
||
| CDS-3UTR CCA 90 bp | CACCCGCTTGTCACCAGAAGATATCTCCATAAGGCCAGCCCAGTCCTGAGAGATACGGACAGGTGGTGCTaGTACCCACTGAAGAGCAGG | + |
|
Preference number: 4 (lower is better) Translates to: HPLVTRRYLHKASPVLRDTDRWC*YPLKSR Trigger: CCTGCTCTTCAGTGGGTACCAGCACCACCTGTCCGT...ATCTCTCAGGACTGGGCTGGCCTTATGGAGATATCTTCTGGTGACAAGCGGGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034776.13 |
||
| CDS-3UTR CCA 90 bp | AGCACACTCTGTCCATCCCTGCCACCAGTGCATAGTTCACATTACCACGGTGCAACGGACAGGTGGTGCTaGTACCCACTGAAGAGCAGG | + |
|
Preference number: 4 (lower is better) Translates to: STLCPSLPPVHSSHYHGATDRWC*YPLKSR Trigger: CCTGCTCTTCAGTGGGTACCAGCACCACCTGTCCGT...TGCACCGTGGTAATGTGAACTATGCACTGGTGGCAGGGATGGACAGAGTGTGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034776.13 ENSMUST00000124984.2 |
||
| CDS-3UTR CCA 90 bp | TGTTATTCAGGCACCTCTAATAGTAATGAAATACAGGGGAGGGCAGGGGCCGGGGAGCAGGGCAGGTCCTaGCATGTGGCTCTCAGCCTT | + |
|
Preference number: 4 (lower is better) Translates to: CYSGTSNSNEIQGRAGAGEQGRS*HVALSL Trigger: AAGGCTGAGAGCCACATGCCAGGACCTGCCCTGCTC...CCCGGCCCCTGCCCTCCCCTGTATTTCATTACTATTAGAGGTGCCTGAATAACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034776.13 |
||
| CDS-3UTR TCA 90 bp | TTGAGTCTCTCAACAGCACACTCTGTCCATCCCTGCCACCAGTGCATAGTTCACCAGGCGATGGTTGACTaGGTCTCCCACCAGGTGGAT | + |
|
Preference number: 4 (lower is better) Translates to: LSLSTAHSVHPCHQCIVHQAMVD*VSHQVD Trigger: ATCCACCTGGTGGGAGACTCAGTCAACCATCGCCTG...GTGAACTATGCACTGGTGGCAGGGATGGACAGAGTGTGCTGTTGAGAGACTCAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034776.13 ENSMUST00000124984.2 |
||
| CDS-3UTR TCA 90 bp | TATTCAGGCACCTCTAATAGTAATGAAATACAGGGGAGGGCAGGGGCCGGGATCAGATCTGGCCCTCGGTaGCCAGGTACCTGTGACAGA | + |
|
Preference number: 4 (lower is better) Translates to: YSGTSNSNEIQGRAGAGIRSGPR*PGTCDR Trigger: TCTGTCACAGGTACCTGGTCACCGAGGGCCAGATCT...GATCCCGGCCCCTGCCCTCCCCTGTATTTCATTACTATTAGAGGTGCCTGAATA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000124984.2 |
||
| CDS-3UTR CCA 90 bp | ACCTCTAATAGTAATGAAATACAGGGGAGGGCAGGGGCCGGGATCTTGGCCTTCCTGAAGAGCAGGCGATaGTTGACTGAGTCTCCCACC | + |
|
Preference number: 4 (lower is better) Translates to: TSNSNEIQGRAGAGILAFLKSRR*LTESPT Trigger: GGTGGGAGACTCAGTCAACCATCGCCTGCTCTTCAG...GAAGGCCAAGATCCCGGCCCCTGCCCTCCCCTGTATTTCATTACTATTAGAGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034776.13 ENSMUST00000124984.2 |
||
| 3UTR CAA 72 bp | TCAAAGGAGTCGATCAGAGTCTCCGGCTTGAGGTTCTaGATAATGGGGTTCTCTCTGACGGACAGGTGGTGC | + |
|
Preference number: 4 (lower is better) Translates to: SKESIRVSGLRF*IMGFSLTDRWC Trigger: GCACCACCTGTCCGTCAGAGAGAACCCCATTATCAAGAACCTCAAGCCGGAGACTCTGATCGACTCCTTTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138276.2 |
||
| CDS-3UTR CCA 90 bp | TATTCAGGCACCTCTAATAGTAATGAAATACAGGGGAGGGCAGGGGCCGGGATCATACCAGCATGGCAATaGGGCGGCCAAAGTCCAGAA | + |
|
Preference number: 4 (lower is better) Translates to: YSGTSNSNEIQGRAGAGIIPAWQ*GGQSPE Trigger: TTCTGGACTTTGGCCGCCCCATTGCCATGCTGGTAT...GATCCCGGCCCCTGCCCTCCCCTGTATTTCATTACTATTAGAGGTGCCTGAATA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034776.13 |
||
| CDS-3UTR TCA 90 bp | GTTATTCAGGCACCTCTAATAGTAATGAAATACAGGGGAGGGCAGGGGCCGGGACCCAGTTCTGCAGTGTaGAGTAGAACCAGAGGTCAA | + |
|
Preference number: 4 (lower is better) Translates to: VIQAPLIVMKYRGGQGPGPSSAV*SRTRGQ Trigger: TTGACCTCTGGTTCTACTTCACACTGCAGAACTGGG...TCCCGGCCCCTGCCCTCCCCTGTATTTCATTACTATTAGAGGTGCCTGAATAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034776.13 |
||
| CDS-3UTR TCA 90 bp | AGCACACTCTGTCCATCCCTGCCACCAGTGCATAGTTCACATTACCACGGTGCAGCTCAGGAACATAGATaGCACCAGGGTACTTCTTTC | + |
|
Preference number: 4 (lower is better) Translates to: STLCPSLPPVHSSHYHGAAQEHR*HQGTSF Trigger: GAAAGAAGTACCCTGGTGTCATCTATGTTCCTGAGC...TGCACCGTGGTAATGTGAACTATGCACTGGTGGCAGGGATGGACAGAGTGTGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034776.13 ENSMUST00000124984.2 |
||
| CDS-3UTR CCA 90 bp | AGCCCAGAGATGGAACTGCTCTGTTTAAAGCACAAAAGAAGTTGTGACCCAGAATCACAGAGCCATGCCTaGCCTGCACGAACGCGACAC | + |
|
Preference number: 4 (lower is better) Translates to: SPEMELLCLKHKRSCDPESQSHA*PARTRH Trigger: GTGTCGCGTTCGTGCAGGCCAGGCATGGCTCTGTGA...TTCTGGGTCACAACTTCTTTTGTGCTTTAAACAGAGCAGTTCCATCTCTGGGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034776.13 |
||
| CDS-3UTR CCA 90 bp | CCCTGCCACCAGTGCATAGTTCACATTACCACGGTGCATGTATGCACACATGTAAAGAGGATGAAGATCTaGCCCTCGGTGACCAGGTAC | + |
|
Preference number: 4 (lower is better) Translates to: PCHQCIVHITTVHVCTHVKRMKI*PSVTRY Trigger: GTACCTGGTCACCGAGGGCCAGATCTTCATCCTCTT...TACATGTGTGCATACATGCACCGTGGTAATGTGAACTATGCACTGGTGGCAGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034776.13 ENSMUST00000124984.2 |
||
| CDS-3UTR TCA 90 bp | ATTCAGGCACCTCTAATAGTAATGAAATACAGGGGAGGGCAGGGGCCGGGATCTCAGGGTACTTCTTTCTaGGTACAGGGTCATTCCACA | + |
|
Preference number: 4 (lower is better) Translates to: IQAPLIVMKYRGGQGPGSQGTSF*VQGHST Trigger: TGTGGAATGACCCTGTACTCAGAAAGAAGTACCCTG...AGATCCCGGCCCCTGCCCTCCCCTGTATTTCATTACTATTAGAGGTGCCTGAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034776.13 ENSMUST00000124984.2 |
||
| CDS-3UTR CCA 90 bp | CCACCACAGCAAAAGAAGCCCAGAGATGGAACTGCTCTGTTTAAAGCACAAAAGAACCAGAGGTCAAGATaGAAGGGGGCTGTGCGGTCT | + |
|
Preference number: 4 (lower is better) Translates to: PPQQKKPRDGTALFKAQKNQRSR*KGAVRS Trigger: AGACCGCACAGCCCCCTTCCATCTTGACCTCTGGTT...CTTTTGTGCTTTAAACAGAGCAGTTCCATCTCTGGGCTTCTTTTGCTGTGGTGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000034776.13 |
||
| 3UTR CAA 72 bp | TACAACAGCTCAAAGGAGTCGATCAGAGTCTCCGGCTaGAGGTTCTTGATAATGGGGTTCTCTCTGACGGAC | + |
|
Preference number: 4 (lower is better) Translates to: YNSSKESIRVSG*RFLIMGFSLTD Trigger: GTCCGTCAGAGAGAACCCCATTATCAAGAACCTCAAGCCGGAGACTCTGATCGACTCCTTTGAGCTGTTGTA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138276.2 |
||
| CDS-3UTR CCA 90 bp | AGCCCAGAGATGGAACTGCTCTGTTTAAAGCACAAAAGAAGTTGTGACCCAGAAAAGAGGATGAAGATCTaGCCCTCGGTGACCAGGTAC | + |
|
Preference number: 4 (lower is better) Translates to: SPEMELLCLKHKRSCDPEKRMKI*PSVTRY Trigger: GTACCTGGTCACCGAGGGCCAGATCTTCATCCTCTT...TTCTGGGTCACAACTTCTTTTGTGCTTTAAACAGAGCAGTTCCATCTCTGGGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034776.13 |
||
| CDS-3UTR TCA 90 bp | AGCCCAGAGATGGAACTGCTCTGTTTAAAGCACAAAAGAAGTTGTGACCCAGAAGCTCAGGAACATAGATaGCACCAGGGTACTTCTTTC | + |
|
Preference number: 4 (lower is better) Translates to: SPEMELLCLKHKRSCDPEAQEHR*HQGTSF Trigger: GAAAGAAGTACCCTGGTGTCATCTATGTTCCTGAGC...TTCTGGGTCACAACTTCTTTTGTGCTTTAAACAGAGCAGTTCCATCTCTGGGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034776.13 |
||
| CDS-3UTR CCA 90 bp | AGCCCAGAGATGGAACTGCTCTGTTTAAAGCACAAAAGAAGTTGTGACCCAGAATTGAGAGGAAACCACTaGATCGGGAATACCAGCATG | + |
|
Preference number: 4 (lower is better) Translates to: SPEMELLCLKHKRSCDPELRGNH*IGNTSM Trigger: CATGCTGGTATTCCCGATCCAGTGGTTTCCTCTCAA...TTCTGGGTCACAACTTCTTTTGTGCTTTAAACAGAGCAGTTCCATCTCTGGGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034776.13 |
||
| CDS-3UTR TCA 90 bp | AAAAGAAGCCCAGAGATGGAACTGCTCTGTTTAAAGCACAAAAGAAGTTGTGACCAGGGTACTTCTTTCTaGGTACAGGGTCATTCCACA | + |
|
Preference number: 4 (lower is better) Translates to: KRSPEMELLCLKHKRSCDQGTSF*VQGHST Trigger: TGTGGAATGACCCTGTACTCAGAAAGAAGTACCCTG...GTCACAACTTCTTTTGTGCTTTAAACAGAGCAGTTCCATCTCTGGGCTTCTTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034776.13 |
||
| CDS CCA 90 bp | GATGGAGTTCCAGGACAGCCAGGACTATGTAATAGAGTCCCTGTCTaGCCTGCACGAACGCGACACCGGGGCCGCCCGCCGCTCCGAGGA | + |
|
Preference number: 5 (lower is better) Translates to: DGVPGQPGLCNRVPV*PARTRHRGRPPLRG Trigger: TCCTCGGAGCGGCGGGCGGCCCCGGTGTCGCGTTCGTGCAGGCCAGACAGGGACTCTATTACATAGTCCTGGCTGTCCTGGAACTCCATC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000141821.2 |
||
| CDS TCA 90 bp | AAGATGAAGAGGATGAAGATCTGGCCCTCGGTGACCAGGTACCTGTaGCAGAGAGGCAACAGCTTCACACGCCTGGCCAGGGGCTGTCCC | + |
|
Preference number: 5 (lower is better) Translates to: KMKRMKIWPSVTRYL*QRGNSFTRLARGCP Trigger: GGGACAGCCCCTGGCCAGGCGTGTGAAGCTGTTGCCTCTCTGTCACAGGTACCTGGTCACCGAGGGCCAGATCTTCATCCTCTTCATCTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124984.2 |
||
| CDS-3UTR CAA 90 bp | GTGGGGGCCTCTGGCTCCCTGGAGACTGGGTTCTCAACAGCATATAAATGGGGTATGTGGCTCTCAGCCTaGCAGGTGGTGAAACAGCCA | + |
|
Preference number: 5 (lower is better) Translates to: VGASGSLETGFSTAYKWGMWLSA*QVVKQP Trigger: TGGCTGTTTCACCACCTGCAAGGCTGAGAGCCACAT...ACCCCATTTATATGCTGTTGAGAACCCAGTCTCCAGGGAGCCAGAGGCCCCCAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034776.13 |
||
| CDS GCA 90 bp | ACCACCTTCCCACTGGTCCTAGTGTGTCACCGTGTTGGCATGTCATaGACACTGCTCTACTTCCAGCCTTTTCTGCCCACATGCAGTGGC | + |
|
Preference number: 5 (lower is better) Translates to: TTFPLVLVCHRVGMS*TLLYFQPFLPTCSG Trigger: GCCACTGCATGTGGGCAGAAAAGGCTGGAAGTAGAGCAGTGTGCATGACATGCCAACACGGTGACACACTAGGACCAGTGGGAAGGTGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124984.2 |
||
| CDS GCA 90 bp | GGCATGTCATGCACACTGCTCTACTTCCAGCCTTTTCTGCCCACATaGAGTGGCCCAGGTACTCGTCATAGTAGTACAACAGCTCAAAGG | + |
|
Preference number: 5 (lower is better) Translates to: GMSCTLLYFQPFLPT*SGPGTRHSSTTAQR Trigger: CCTTTGAGCTGTTGTACTACTATGACGAGTACCTGGGCCACTGCATGTGGGCAGAAAAGGCTGGAAGTAGAGCAGTGTGCATGACATGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124984.2 |
||
| CDS GCA 90 bp | ACCGTGTTGGCATGTCATGCACACTGCTCTACTTCCAGCCTTTTCTaGCCACATGCAGTGGCCCAGGTACTCGTCATAGTAGTACAACAG | + |
|
Preference number: 5 (lower is better) Translates to: TVLACHAHCSTSSLF*PHAVAQVLVIVVQQ Trigger: CTGTTGTACTACTATGACGAGTACCTGGGCCACTGCATGTGGGCAGAAAAGGCTGGAAGTAGAGCAGTGTGCATGACATGCCAACACGGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124984.2 |
||
| CDS CCA 90 bp | GGGCGTGATGATGTTGTAGGTCATGTGAAAGTAGTCCCCGACACTTaGCTTGTTGAGAGGAAACCACTGGATCGGGAATACCAGCATGGC | + |
|
Preference number: 5 (lower is better) Translates to: GRDDVVGHVKVVPDT*LVERKPLDREYQHG Trigger: GCCATGCTGGTATTCCCGATCCAGTGGTTTCCTCTCAACAAGCCAAGTGTCGGGGACTACTTTCACATGACCTACAACATCATCACGCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034776.13 |
||
| CDS-3UTR CAA 90 bp | CTCAACAGCACACTCTGTCCATCCCTGCCACCAGTGCATAGTTCACATTACCACCCGACACTTGGCTTGTaGAGAGGAAACCACTGGATC | + |
|
Preference number: 5 (lower is better) Translates to: LNSTLCPSLPPVHSSHYHPTLGL*RGNHWI Trigger: GATCCAGTGGTTTCCTCTCAACAAGCCAAGTGTCGG...GTGGTAATGTGAACTATGCACTGGTGGCAGGGATGGACAGAGTGTGCTGTTGAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034776.13 |
||
| CDS-3UTR CAA 90 bp | CTCCCTAAGGGAATCAGCAACCACCAGTCCCCAGAGCCACATAAACTATGGAGCATCAGAGTCTCCGGCTaGAGGTTCTTGATAATGGGG | + |
|
Preference number: 5 (lower is better) Translates to: LPKGISNHQSPEPHKLWSIRVSG*RFLIMG Trigger: CCCCATTATCAAGAACCTCAAGCCGGAGACTCTGAT...GCTCCATAGTTTATGTGGCTCTGGGGACTGGTGGTTGCTGATTCCCTTAGGGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034776.13 |
||
| CDS-3UTR CAA 90 bp | ACAGCACACTCTGTCCATCCCTGCCACCAGTGCATAGTTCACATTACCACGGTGATCAGAGTCTCCGGCTaGAGGTTCTTGATAATGGGG | + |
|
Preference number: 5 (lower is better) Translates to: TAHSVHPCHQCIVHITTVIRVSG*RFLIMG Trigger: CCCCATTATCAAGAACCTCAAGCCGGAGACTCTGAT...CACCGTGGTAATGTGAACTATGCACTGGTGGCAGGGATGGACAGAGTGTGCTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034776.13 ENSMUST00000124984.2 |
||
| CDS-3UTR CAA 90 bp | TTGAGTCTCTCAACAGCACACTCTGTCCATCCCTGCCACCAGTGCATAGTTCACTCCGGCTTGAGGTTCTaGATAATGGGGTTCTCTCTG | + |
|
Preference number: 5 (lower is better) Translates to: LSLSTAHSVHPCHQCIVHSGLRF*IMGFSL Trigger: CAGAGAGAACCCCATTATCAAGAACCTCAAGCCGGA...GTGAACTATGCACTGGTGGCAGGGATGGACAGAGTGTGCTGTTGAGAGACTCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034776.13 ENSMUST00000124984.2 |
||
| CDS-3UTR CAA 90 bp | CCACCAGTGCATAGTTCACATTACCACGGTGCATGTATGCACACATGTACAAACTCCGGCTTGAGGTTCTaGATAATGGGGTTCTCTCTG | + |
|
Preference number: 5 (lower is better) Translates to: PPVHSSHYHGACMHTCTNSGLRF*IMGFSL Trigger: CAGAGAGAACCCCATTATCAAGAACCTCAAGCCGGA...GTTTGTACATGTGTGCATACATGCACCGTGGTAATGTGAACTATGCACTGGTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034776.13 ENSMUST00000124984.2 |
||
| CDS GCA 72 bp | TCTTTGTCCTCGGCCTTCACAGAGCCATGCCTGGCCTaGACGAACGCGACACCGGGGCCGCCCGCCGCTCCG | + |
|
Preference number: 6 (lower is better) Translates to: SLSSAFTEPCLA*TNATPGPPAAP Trigger: CGGAGCGGCGGGCGGCCCCGGTGTCGCGTTCGTGCAGGCCAGGCATGGCTCTGTGAAGGCCGAGGACAAAGA 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034776.13 |
||
| CDS CCA 72 bp | TGCGGTCTTTGTCCTCGGCCTTCACAGAGCCATGCCTaGCCTGCACGAACGCGACACCGGGGCCGCCCGCCG | + |
|
Preference number: 6 (lower is better) Translates to: CGLCPRPSQSHA*PARTRHRGRPP Trigger: CGGCGGGCGGCCCCGGTGTCGCGTTCGTGCAGGCCAGGCATGGCTCTGTGAAGGCCGAGGACAAAGACCGCA 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034776.13 |
||
| CDS CCA 72 bp | GGTACCTGTGACAGAGAGGCAACAGCTTCACACGCCTaGCCAGGGGCTGTCCCCACCACCTTCCCACTGGTC | + |
|
Preference number: 6 (lower is better) Translates to: GTCDREATASHA*PGAVPTTFPLV Trigger: GACCAGTGGGAAGGTGGTGGGGACAGCCCCTGGCCAGGCGTGTGAAGCTGTTGCCTCTCTGTCACAGGTACC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000124984.2 |
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| CDS GCA 72 bp | AGAGGAAGAGGCCGTTGCTGTCCAGGAAGAGGCGCCTaGGCTTCTGGTGCAAGACGAGAGCCAGCATGGCGA | + |
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Preference number: 6 (lower is better) Translates to: RGRGRCCPGRGA*ASGARREPAWR Trigger: TCGCCATGCTGGCTCTCGTCTTGCACCAGAAGCGCAGGCGCCTCTTCCTGGACAGCAACGGCCTCTTCCTCT 62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034776.13 ENSMUST00000124984.2 |
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| CDS CCA 72 bp | AGGCCGTTGCTGTCCAGGAAGAGGCGCCTGCGCTTCTaGTGCAAGACGAGAGCCAGCATGGCGAAGAAGGTG | + |
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Preference number: 6 (lower is better) Translates to: RPLLSRKRRLRF*CKTRASMAKKV Trigger: CACCTTCTTCGCCATGCTGGCTCTCGTCTTGCACCAGAAGCGCAGGCGCCTCTTCCTGGACAGCAACGGCCT 62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034776.13 ENSMUST00000124984.2 |
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| CDS GCA 72 bp | CCGTTGCTGTCCAGGAAGAGGCGCCTGCGCTTCTGGTaGAAGACGAGAGCCAGCATGGCGAAGAAGGTGAAG | + |
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Preference number: 6 (lower is better) Translates to: PLLSRKRRLRFW*KTRASMAKKVK Trigger: CTTCACCTTCTTCGCCATGCTGGCTCTCGTCTTGCACCAGAAGCGCAGGCGCCTCTTCCTGGACAGCAACGG 61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034776.13 ENSMUST00000124984.2 |
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| CDS TCA 72 bp | AGGATGAAGATCTGGCCCTCGGTGACCAGGTACCTGTaGCAGAGAGGCAACAGCTTCACACGCCTGGCCAGG | + |
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Preference number: 6 (lower is better) Translates to: RMKIWPSVTRYL*QRGNSFTRLAR Trigger: CCTGGCCAGGCGTGTGAAGCTGTTGCCTCTCTGTCACAGGTACCTGGTCACCGAGGGCCAGATCTTCATCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124984.2 |
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| CDS TCA 72 bp | AGGTCATGTGAAAGTAGTCCCCGACACTTGGCTTGTTaGGAGGAAACCACTGGATCGGGAATACCAGCATGG | + |
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Preference number: 6 (lower is better) Translates to: RSCESSPRHLAC*EETTGSGIPAW Trigger: CCATGCTGGTATTCCCGATCCAGTGGTTTCCTCTCAACAAGCCAAGTGTCGGGGACTACTTTCACATGACCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034776.13 |
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| CDS GCA 72 bp | TGCACACTGCTCTACTTCCAGCCTTTTCTGCCCACATaGAGTGGCCCAGGTACTCGTCATAGTAGTACAACA | + |
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Preference number: 6 (lower is better) Translates to: CTLLYFQPFLPT*SGPGTRHSSTT Trigger: TGTTGTACTACTATGACGAGTACCTGGGCCACTGCATGTGGGCAGAAAAGGCTGGAAGTAGAGCAGTGTGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124984.2 |
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