Pregenerated sensors for CLN5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022125Ensembl transcript IDs: ENSMUST00000022721.8, ENSMUST00000227117.2
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CAGAAGGACACTTCACCTAGCCATGTCTGGAGCCAGAAGCTTCCATaGCCTGTACTAAAGAAGCAATGTGTACTGTGCCAGCTCAAAGTC | + |
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Preference number: 1 (lower is better) Translates to: QKDTSPSHVWSQKLP*PVLKKQCVLCQLKV Trigger: GACTTTGAGCTGGCACAGTACACATTGCTTCTTTAGTACAGGCCATGGAAGCTTCTGGCTCCAGACATGGCTAGGTGAAGTGTCCTTCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022721.8 |
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| 3UTR TCA 90 bp | ACTGGTAACATTTGGTGCACAGATACCGGTCTAAAGGCCACAATCTaGAGAGTGCTGGAAAGCCTCCAGTGTATCCTGAGTGAGAACCTA | + |
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Preference number: 1 (lower is better) Translates to: TGNIWCTDTGLKATI*RVLESLQCILSENL Trigger: TAGGTTCTCACTCAGGATACACTGGAGGCTTTCCAGCACTCTTCAGATTGTGGCCTTTAGACCGGTATCTGTGCACCAAATGTTACCAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022721.8 |
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| 3UTR-3UTR CCA 90 bp | TCTGCAAGAGTCTTGAAATGTCCAGATACTGCACTTCCAACAGTGAGCCCCAGGAGCCCTGGAAGAACATaGATGCTGCTGTCTGGAGAG | + |
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Preference number: 2 (lower is better) Translates to: SARVLKCPDTALPTVSPRSPGRT*MLLSGE Trigger: CTCTCCAGACAGCAGCATCCATGTTCTTCCAGGGCT...CCTGGGGCTCACTGTTGGAAGTGCAGTATCTGGACATTTCAAGACTCTTGCAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022721.8 |
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| 3UTR-3UTR GCA 90 bp | CTACTCTGCAAGAGTCTTGAAATGTCCAGATACTGCACTTCCAACAGTGAGCCCCTGGAAGAACATGGATaGTGCTGTCTGGAGAGCAGC | + |
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Preference number: 2 (lower is better) Translates to: LLCKSLEMSRYCTSNSEPLEEHG*CCLESS Trigger: GCTGCTCTCCAGACAGCAGCATCCATGTTCTTCCAG...GGGCTCACTGTTGGAAGTGCAGTATCTGGACATTTCAAGACTCTTGCAGAGTAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022721.8 |
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| 3UTR-3UTR CCA 90 bp | CTACTCTGCAAGAGTCTTGAAATGTCCAGATACTGCACTTCCAACAGTGAGCCCATGGATGCTGCTGTCTaGAGAGCAGCAGAGTGGAAG | + |
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Preference number: 2 (lower is better) Translates to: LLCKSLEMSRYCTSNSEPMDAAV*RAAEWK Trigger: CTTCCACTCTGCTGCTCTCCAGACAGCAGCATCCAT...GGGCTCACTGTTGGAAGTGCAGTATCTGGACATTTCAAGACTCTTGCAGAGTAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022721.8 |
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| 3UTR CAA 90 bp | CTCCAGTGTATCCTGAGTGAGAACCTAATTCCAGGTCACTTTATCTaGCTAAGCCCTGACATCTGGGCCAGCAGATACGTAGATGAGACT | + |
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Preference number: 2 (lower is better) Translates to: LQCILSENLIPGHFI*LSPDIWASRYVDET Trigger: AGTCTCATCTACGTATCTGCTGGCCCAGATGTCAGGGCTTAGCAAGATAAAGTGACCTGGAATTAGGTTCTCACTCAGGATACACTGGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022721.8 |
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| 3UTR-3UTR CCA 90 bp | ATCCTGAGTGAGAACCTAATTCCAGGTCACTTTATCTTGCTAAGCCCTGACATCTCACCTAGCCATGTCTaGAGCCAGAAGCTTCCATGG | + |
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Preference number: 2 (lower is better) Translates to: ILSENLIPGHFILLSPDISPSHV*SQKLPW Trigger: CCATGGAAGCTTCTGGCTCCAGACATGGCTAGGTGA...GATGTCAGGGCTTAGCAAGATAAAGTGACCTGGAATTAGGTTCTCACTCAGGAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022721.8 |
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| 3UTR-3UTR GCA 90 bp | ATCCTGAGTGAGAACCTAATTCCAGGTCACTTTATCTTGCTAAGCCCTGACATCGAAGAACATGGATGCTaGTGTCTGGAGAGCAGCAGA | + |
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Preference number: 2 (lower is better) Translates to: ILSENLIPGHFILLSPDIEEHGC*CLESSR Trigger: TCTGCTGCTCTCCAGACAGCAGCATCCATGTTCTTC...GATGTCAGGGCTTAGCAAGATAAAGTGACCTGGAATTAGGTTCTCACTCAGGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022721.8 |
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| 3UTR-3UTR TCA 90 bp | CTCCAGTGTATCCTGAGTGAGAACCTAATTCCAGGTCACTTTATCTTGCTAAGCGCTAACAAAGGCCCTTaGCAAACTTCTGTCCTTTCC | + |
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Preference number: 2 (lower is better) Translates to: LQCILSENLIPGHFILLSANKGP*QTSVLS Trigger: GGAAAGGACAGAAGTTTGTCAAGGGCCTTTGTTAGC...GCTTAGCAAGATAAAGTGACCTGGAATTAGGTTCTCACTCAGGATACACTGGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022721.8 |
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| 3UTR-3UTR GCA 90 bp | ATCCTGAGTGAGAACCTAATTCCAGGTCACTTTATCTTGCTAAGCCCTGACATCGTAGCCCGAGAAAAATaGTACCTTGGGATCAAAGGC | + |
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Preference number: 2 (lower is better) Translates to: ILSENLIPGHFILLSPDIVAREK*YLGIKG Trigger: GCCTTTGATCCCAAGGTAGCATTTTTCTCGGGCTAC...GATGTCAGGGCTTAGCAAGATAAAGTGACCTGGAATTAGGTTCTCACTCAGGAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022721.8 |
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| 3UTR-3UTR TCA 90 bp | GAGAACCTAATTCCAGGTCACTTTATCTTGCTAAGCCCTGACATCTGGGCCAGCCAAAATGAGTTCAACTaGTCAAAATACAGGAGCTTG | + |
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Preference number: 2 (lower is better) Translates to: ENLIPGHFILLSPDIWASQNEFN*SKYRSL Trigger: CAAGCTCCTGTATTTTGATCAGTTGAACTCATTTTG...GCTGGCCCAGATGTCAGGGCTTAGCAAGATAAAGTGACCTGGAATTAGGTTCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022721.8 |
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| 3UTR-3UTR GCA 90 bp | ATCCTGAGTGAGAACCTAATTCCAGGTCACTTTATCTTGCTAAGCCCTGACATCCGGTTTCTGCTACTCTaGAAGAGTCTTGAAATGTCC | + |
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Preference number: 2 (lower is better) Translates to: ILSENLIPGHFILLSPDIRFLLL*KSLEMS Trigger: GGACATTTCAAGACTCTTGCAGAGTAGCAGAAACCG...GATGTCAGGGCTTAGCAAGATAAAGTGACCTGGAATTAGGTTCTCACTCAGGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022721.8 |
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| 3UTR-3UTR CCA 90 bp | ATCCTGAGTGAGAACCTAATTCCAGGTCACTTTATCTTGCTAAGCCCTGACATCTTTCTGTATTTGCCATaGCTAGAGGCACTATTCCAG | + |
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Preference number: 2 (lower is better) Translates to: ILSENLIPGHFILLSPDIFLYLP*LEALFQ Trigger: CTGGAATAGTGCCTCTAGCCATGGCAAATACAGAAA...GATGTCAGGGCTTAGCAAGATAAAGTGACCTGGAATTAGGTTCTCACTCAGGAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022721.8 |
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| 3UTR-3UTR TCA 90 bp | AAACAGCACTACTGTAACAGAAAAAGTAGCCCGAGAAAAATGCTACCTTGGGATACTCTGCAAGAGTCTTaGAATGTCCAGATACTGCAC | + |
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Preference number: 2 (lower is better) Translates to: KQHYCNRKSSPRKMLPWDTLQES*NVQILH Trigger: GTGCAGTATCTGGACATTTCAAGACTCTTGCAGAGT...ATCCCAAGGTAGCATTTTTCTCGGGCTACTTTTTCTGTTACAGTAGTGCTGTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000022721.8 |
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| 3UTR-3UTR CCA 90 bp | GGTAAGGACATAAATCTAGAGATGTTAAATTGCTTCTGTCACAACAGCCAGCTAAGAAAAATGCTACCTTaGGATCAAAGGCTCTCCATA | + |
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Preference number: 2 (lower is better) Translates to: GKDINLEMLNCFCHNSQLRKMLP*DQRLSI Trigger: TATGGAGAGCCTTTGATCCCAAGGTAGCATTTTTCT...TAGCTGGCTGTTGTGACAGAAGCAATTTAACATCTCTAGATTTATGTCCTTACC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022721.8 |
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| 3UTR GCA 72 bp | CTGCTACTCTGCAAGAGTCTTGAAATGTCCAGATACTaGACTTCCAACAGTGAGCCCCAGGGAGGGAAGGTG | + |
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Preference number: 3 (lower is better) Translates to: LLLCKSLEMSRY*TSNSEPQGGKV Trigger: CACCTTCCCTCCCTGGGGCTCACTGTTGGAAGTGCAGTATCTGGACATTTCAAGACTCTTGCAGAGTAGCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022721.8 |
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| 3UTR CCA 72 bp | CTGTGCCAGCTCAAAGTCTCAGCAATTACCCAGGAATaGATGGCCTGTACGTACGTCAGGCAAATTCAAGGA | + |
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Preference number: 3 (lower is better) Translates to: LCQLKVSAITQE*MACTYVRQIQG Trigger: TCCTTGAATTTGCCTGACGTACGTACAGGCCATCCATTCCTGGGTAATTGCTGAGACTTTGAGCTGGCACAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022721.8 |
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| 3UTR CCA 72 bp | ACTTCACCTAGCCATGTCTGGAGCCAGAAGCTTCCATaGCCTGTACTAAAGAAGCAATGTGTACTGTGCCAG | + |
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Preference number: 3 (lower is better) Translates to: TSPSHVWSQKLP*PVLKKQCVLCQ Trigger: CTGGCACAGTACACATTGCTTCTTTAGTACAGGCCATGGAAGCTTCTGGCTCCAGACATGGCTAGGTGAAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022721.8 |
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| 3UTR TCA 72 bp | ATTTGGTGCACAGATACCGGTCTAAAGGCCACAATCTaGAGAGTGCTGGAAAGCCTCCAGTGTATCCTGAGT | + |
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Preference number: 3 (lower is better) Translates to: IWCTDTGLKATI*RVLESLQCILS Trigger: ACTCAGGATACACTGGAGGCTTTCCAGCACTCTTCAGATTGTGGCCTTTAGACCGGTATCTGTGCACCAAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022721.8 |
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| 3UTR TCA 72 bp | CTGAAGAGTGCTGGAAAGCCTCCAGTGTATCCTGAGTaGGAACCTAATTCCAGGTCACTTTATCTTGCTAAG | + |
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Preference number: 3 (lower is better) Translates to: LKSAGKPPVYPE*EPNSRSLYLAK Trigger: CTTAGCAAGATAAAGTGACCTGGAATTAGGTTCTCACTCAGGATACACTGGAGGCTTTCCAGCACTCTTCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022721.8 |
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| 3UTR GCA 72 bp | TCACTTTGGCCAGTACAATTACGGTTTCTGCTACTCTaGAAGAGTCTTGAAATGTCCAGATACTGCACTTCC | + |
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Preference number: 3 (lower is better) Translates to: SLWPVQLRFLLL*KSLEMSRYCTS Trigger: GGAAGTGCAGTATCTGGACATTTCAAGACTCTTGCAGAGTAGCAGAAACCGTAATTGTACTGGCCAAAGTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022721.8 |
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| 3UTR-3UTR CAA 90 bp | AAACAGCACTACTGTAACAGAAAAAGTAGCCCGAGAAAAATGCTACCTTGGGATTACTCTGCAAGAGTCTaGAAATGTCCAGATACTGCA | + |
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Preference number: 3 (lower is better) Translates to: KQHYCNRKSSPRKMLPWDYSARV*KCPDTA Trigger: TGCAGTATCTGGACATTTCAAGACTCTTGCAGAGTA...ATCCCAAGGTAGCATTTTTCTCGGGCTACTTTTTCTGTTACAGTAGTGCTGTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000022721.8 |
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| 3UTR-3UTR CAA 90 bp | GGTAAGGACATAAATCTAGAGATGTTAAATTGCTTCTGTCACAACAGCCAGCTAAAAATTTTTCTGTATTaGCCATGGCTAGAGGCACTA | + |
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Preference number: 3 (lower is better) Translates to: GKDINLEMLNCFCHNSQLKIFLY*PWLEAL Trigger: TAGTGCCTCTAGCCATGGCAAATACAGAAAAATTTT...TAGCTGGCTGTTGTGACAGAAGCAATTTAACATCTCTAGATTTATGTCCTTACC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000022721.8 |
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| 3UTR GCA 72 bp | TTTAGAGGTAAGGACATAAATCTAGAGATGTTAAATTaGTTCTGTCACAACAGCCAGCTAGCCAAAAATTTT | + |
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Preference number: 3 (lower is better) Translates to: FRGKDINLEMLN*FCHNSQLAKNF Trigger: AAAATTTTTGGCTAGCTGGCTGTTGTGACAGAAGCAATTTAACATCTCTAGATTTATGTCCTTACCTCTAAA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022721.8 |
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| CDS-3UTR CCA 90 bp | CCAGAAGCTTCCATGGCCTGTACTAAAGAAGCAATGTGTACTGTGCCAGCTCAAGACTCGAACCACGTCTaGGCCCCTTGTCCTGGGCCG | + |
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Preference number: 4 (lower is better) Translates to: PEASMACTKEAMCTVPAQDSNHV*APCPGP Trigger: CGGCCCAGGACAAGGGGCCCAGACGTGGTTCGAGTC...TTGAGCTGGCACAGTACACATTGCTTCTTTAGTACAGGCCATGGAAGCTTCTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022721.8 |
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| CDS-3UTR GCA 90 bp | GAGAACCTAATTCCAGGTCACTTTATCTTGCTAAGCCCTGACATCTGGGCCAGCCCAGTTTCATTGTCCTaGTTCACCCACTCGGCCACT | + |
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Preference number: 4 (lower is better) Translates to: ENLIPGHFILLSPDIWASPVSLS*FTHSAT Trigger: AGTGGCCGAGTGGGTGAAGCAGGACAATGAAACTGG...GCTGGCCCAGATGTCAGGGCTTAGCAAGATAAAGTGACCTGGAATTAGGTTCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022721.8 |
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| CDS-3UTR CCA 90 bp | CTCCAGTGTATCCTGAGTGAGAACCTAATTCCAGGTCACTTTATCTTGCTAAGCTTGTCAGGCCGGAGGTaGGGAAATGTACAGTTGCCC | + |
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Preference number: 4 (lower is better) Translates to: LQCILSENLIPGHFILLSLSGRR*GNVQLP Trigger: GGGCAACTGTACATTTCCCCACCTCCGGCCTGACAA...GCTTAGCAAGATAAAGTGACCTGGAATTAGGTTCTCACTCAGGATACACTGGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022721.8 |
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| CDS-3UTR CCA 90 bp | GAGAACCTAATTCCAGGTCACTTTATCTTGCTAAGCCCTGACATCTGGGCCAGCGTACAGTTGCCCAGCTaGAAAAGTTCATACCACTCA | + |
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Preference number: 4 (lower is better) Translates to: ENLIPGHFILLSPDIWASVQLPS*KSSYHS Trigger: TGAGTGGTATGAACTTTTCCAGCTGGGCAACTGTAC...GCTGGCCCAGATGTCAGGGCTTAGCAAGATAAAGTGACCTGGAATTAGGTTCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022721.8 |
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| 3UTR CAA 72 bp | ATCCTGAGTGAGAACCTAATTCCAGGTCACTTTATCTaGCTAAGCCCTGACATCTGGGCCAGCAGATACGTA | + |
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Preference number: 4 (lower is better) Translates to: ILSENLIPGHFI*LSPDIWASRYV Trigger: TACGTATCTGCTGGCCCAGATGTCAGGGCTTAGCAAGATAAAGTGACCTGGAATTAGGTTCTCACTCAGGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022721.8 |
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| CDS-3UTR GCA 90 bp | AAGCCAGTCATTTCCACTTGTGTCTGTCATCCCAGTGTTGAGGGCAGGAGTTGTTTAGACAAAAATGTATaGTTCAGGTTCAGTGAGGGA | + |
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Preference number: 4 (lower is better) Translates to: KPVISTCVCHPSVEGRSCLDKNV*FRFSEG Trigger: TCCCTCACTGAACCTGAAGCATACATTTTTGTCTAA...ACAACTCCTGCCCTCAACACTGGGATGACAGACACAAGTGGAAATGACTGGCTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000227117.2 |
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| CDS-3UTR TCA 90 bp | AAACAGCACTACTGTAACAGAAAAAGTAGCCCGAGAAAAATGCTACCTTGGGATTATGGTTGCAACGACTaGCAGTGTCCCGTTTTCCTT | + |
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Preference number: 4 (lower is better) Translates to: KQHYCNRKSSPRKMLPWDYGCND*QCPVFL Trigger: AAGGAAAACGGGACACTGTCAGTCGTTGCAACCATA...ATCCCAAGGTAGCATTTTTCTCGGGCTACTTTTTCTGTTACAGTAGTGCTGTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000022721.8 |
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| CDS-3UTR GCA 90 bp | AAACAGCACTACTGTAACAGAAAAAGTAGCCCGAGAAAAATGCTACCTTGGGATGGGGAAATGTACAGTTaGCCAGCTGGAAAAGTTCAT | + |
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Preference number: 4 (lower is better) Translates to: KQHYCNRKSSPRKMLPWDGEMYS*PAGKVH Trigger: ATGAACTTTTCCAGCTGGGCAACTGTACATTTCCCC...ATCCCAAGGTAGCATTTTTCTCGGGCTACTTTTTCTGTTACAGTAGTGCTGTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000022721.8 |
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| CDS-3UTR TCA 90 bp | CTCCAGTGTATCCTGAGTGAGAACCTAATTCCAGGTCACTTTATCTTGCTAAGCTTGACAAATACGGTCTaGAGGGGCCATAAAATTTTT | + |
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Preference number: 4 (lower is better) Translates to: LQCILSENLIPGHFILLSLTNTV*RGHKIF Trigger: AAAAATTTTATGGCCCCTTCAGACCGTATTTGTCAA...GCTTAGCAAGATAAAGTGACCTGGAATTAGGTTCTCACTCAGGATACACTGGAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022721.8 |
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| CDS-3UTR CAA 90 bp | GAGAACCTAATTCCAGGTCACTTTATCTTGCTAAGCCCTGACATCTGGGCCAGCGGGCACCGGCCAGCGTaGCCCAGACGTCGGGGACGC | + |
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Preference number: 5 (lower is better) Translates to: ENLIPGHFILLSPDIWASGHRPA*PRRRGR Trigger: GCGTCCCCGACGTCTGGGCAACGCTGGCCGGTGCCC...GCTGGCCCAGATGTCAGGGCTTAGCAAGATAAAGTGACCTGGAATTAGGTTCTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022721.8 |
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| CDS-3UTR CAA 90 bp | ATCCTGAGTGAGAACCTAATTCCAGGTCACTTTATCTTGCTAAGCCCTGACATCCCACGTCTGGGCCCCTaGTCCTGGGCCGGCTCGGAC | + |
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Preference number: 5 (lower is better) Translates to: ILSENLIPGHFILLSPDIPRLGP*SWAGSD Trigger: GTCCGAGCCGGCCCAGGACAAGGGGCCCAGACGTGG...GATGTCAGGGCTTAGCAAGATAAAGTGACCTGGAATTAGGTTCTCACTCAGGAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022721.8 |
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| CDS CCA 90 bp | GCCCCTTGGTTACACCAGAAGGGAGCGCTCTTGTCAGGCCGGAGGTaGGGAAATGTACAGTTGCCCAGCTGGAAAAGTTCATACCACTCA | + |
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Preference number: 5 (lower is better) Translates to: APWLHQKGALLSGRR*GNVQLPSWKSSYHS Trigger: TGAGTGGTATGAACTTTTCCAGCTGGGCAACTGTACATTTCCCCACCTCCGGCCTGACAAGAGCGCTCCCTTCTGGTGTAACCAAGGGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022721.8 |
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| CDS CCA 90 bp | ATTCGAACAGTCGTAGGACTCGAACCACGTCTGGGCCCCTTGTCCTaGGCCGGCTCGGACCGTCCATGTCTCATAATAAATCCCAGTTTC | + |
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Preference number: 5 (lower is better) Translates to: IRTVVGLEPRLGPLS*AGSDRPCLIINPSF Trigger: GAAACTGGGATTTATTATGAGACATGGACGGTCCGAGCCGGCCCAGGACAAGGGGCCCAGACGTGGTTCGAGTCCTACGACTGTTCGAAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022721.8 |
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| CDS GCA 90 bp | AGAAGGGAGCGCTCTTGTCAGGCCGGAGGTGGGGAAATGTACAGTTaGCCAGCTGGAAAAGTTCATACCACTCAATTGTGTAGTTCTTGC | + |
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Preference number: 5 (lower is better) Translates to: RRERSCQAGGGEMYS*PAGKVHTTQLCSSC Trigger: GCAAGAACTACACAATTGAGTGGTATGAACTTTTCCAGCTGGGCAACTGTACATTTCCCCACCTCCGGCCTGACAAGAGCGCTCCCTTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022721.8 |
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| CDS-3UTR CAA 90 bp | CCAGAAGCTTCCATGGCCTGTACTAAAGAAGCAATGTGTACTGTGCCAGCTCAATGGGGAAATGTACAGTaGCCCAGCTGGAAAAGTTCA | + |
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Preference number: 5 (lower is better) Translates to: PEASMACTKEAMCTVPAQWGNVQ*PSWKSS Trigger: TGAACTTTTCCAGCTGGGCAACTGTACATTTCCCCA...TTGAGCTGGCACAGTACACATTGCTTCTTTAGTACAGGCCATGGAAGCTTCTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022721.8 |
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| CDS-3UTR CAA 90 bp | TCTGCAAGAGTCTTGAAATGTCCAGATACTGCACTTCCAACAGTGAGCCCCAGGGTTCATACCACTCAATaGTGTAGTTCTTGCCTGTCA | + |
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Preference number: 5 (lower is better) Translates to: SARVLKCPDTALPTVSPRVHTTQ*CSSCLS Trigger: TGACAGGCAAGAACTACACAATTGAGTGGTATGAAC...CCTGGGGCTCACTGTTGGAAGTGCAGTATCTGGACATTTCAAGACTCTTGCAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022721.8 |
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| CDS-3UTR CAA 90 bp | GAGAACCTAATTCCAGGTCACTTTATCTTGCTAAGCCCTGACATCTGGGCCAGCAGAGTCTTGTTTCCTTaGGGCCCAAAAATAGATGTT | + |
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Preference number: 5 (lower is better) Translates to: ENLIPGHFILLSPDIWASRVLFP*GPKIDV Trigger: AACATCTATTTTTGGGCCCAAAGGAAACAAGACTCT...GCTGGCCCAGATGTCAGGGCTTAGCAAGATAAAGTGACCTGGAATTAGGTTCTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022721.8 |
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| CDS-3UTR CAA 90 bp | AAACAGCACTACTGTAACAGAAAAAGTAGCCCGAGAAAAATGCTACCTTGGGATTTCATCAGAAAATCTTaGGTTGACAAATACGGTCTG | + |
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Preference number: 5 (lower is better) Translates to: KQHYCNRKSSPRKMLPWDFIRKS*VDKYGL Trigger: CAGACCGTATTTGTCAACCAAAGATTTTCTGATGAA...ATCCCAAGGTAGCATTTTTCTCGGGCTACTTTTTCTGTTACAGTAGTGCTGTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000022721.8 |
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| CDS CAA 72 bp | CAGGCTGCCCCTTGGTTACACCAGAAGGGAGCGCTCTaGTCAGGCCGGAGGTGGGGAAATGTACAGTTGCCC | + |
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Preference number: 6 (lower is better) Translates to: QAAPWLHQKGAL*SGRRWGNVQLP Trigger: GGGCAACTGTACATTTCCCCACCTCCGGCCTGACAAGAGCGCTCCCTTCTGGTGTAACCAAGGGGCAGCCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022721.8 |
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| CDS CCA 72 bp | GTCGTAGGACTCGAACCACGTCTGGGCCCCTTGTCCTaGGCCGGCTCGGACCGTCCATGTCTCATAATAAAT | + |
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Preference number: 6 (lower is better) Translates to: VVGLEPRLGPLS*AGSDRPCLIIN Trigger: ATTTATTATGAGACATGGACGGTCCGAGCCGGCCCAGGACAAGGGGCCCAGACGTGGTTCGAGTCCTACGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022721.8 |
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| CDS CAA 90 bp | GACAAAATTCGAACAGTCGTAGGACTCGAACCACGTCTGGGCCCCTaGTCCTGGGCCGGCTCGGACCGTCCATGTCTCATAATAAATCCC | + |
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Preference number: 6 (lower is better) Translates to: DKIRTVVGLEPRLGP*SWAGSDRPCLIINP Trigger: GGGATTTATTATGAGACATGGACGGTCCGAGCCGGCCCAGGACAAGGGGCCCAGACGTGGTTCGAGTCCTACGACTGTTCGAATTTTGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022721.8 |
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| CDS CCA 72 bp | TTACACCAGAAGGGAGCGCTCTTGTCAGGCCGGAGGTaGGGAAATGTACAGTTGCCCAGCTGGAAAAGTTCA | + |
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Preference number: 6 (lower is better) Translates to: LHQKGALLSGRR*GNVQLPSWKSS Trigger: TGAACTTTTCCAGCTGGGCAACTGTACATTTCCCCACCTCCGGCCTGACAAGAGCGCTCCCTTCTGGTGTAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022721.8 |
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| CDS CAA 72 bp | ATCGGGGCTTGTAGTCGTAAGACCTCGATGACGTCATaGTCCTTCATAACTGGGATGGGCGAGCCGGTAGGA | + |
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Preference number: 6 (lower is better) Translates to: IGACSRKTSMTS*SFITGMGEPVG Trigger: TCCTACCGGCTCGCCCATCCCAGTTATGAAGGACAATGACGTCATCGAGGTCTTACGACTACAAGCCCCGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022721.8 |
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| CDS CAA 90 bp | AATTCCCAAATCGGGGCTTGTAGTCGTAAGACCTCGATGACGTCATaGTCCTTCATAACTGGGATGGGCGAGCCGGTAGGACAGAAAGTA | + |
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Preference number: 6 (lower is better) Translates to: NSQIGACSRKTSMTS*SFITGMGEPVGQKV Trigger: TACTTTCTGTCCTACCGGCTCGCCCATCCCAGTTATGAAGGACAATGACGTCATCGAGGTCTTACGACTACAAGCCCCGATTTGGGAATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022721.8 |
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| CDS GCA 72 bp | TTGCCTGTCAGTGTGCTCCTGAATCCCACGGCGTCATaGATAAGTTTAAAGTGTCCCAGGAGGTCTCCATAT | + |
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Preference number: 6 (lower is better) Translates to: LPVSVLLNPTAS*ISLKCPRRSPY Trigger: ATATGGAGACCTCCTGGGACACTTTAAACTTATGCATGACGCCGTGGGATTCAGGAGCACACTGACAGGCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022721.8 |
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