Pregenerated sensors for CLK2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000068917Ensembl transcript IDs: ENSMUST00000090927.12, ENSMUST00000121212.9, ENSMUST00000121931.8, ENSMUST00000128318.8, ENSMUST00000148265.8
Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | AAGCACCAGTGTCCTGGATTGGACACCCACTGCTACACAAGGAGCAGGGGGCCCTACATCGCATGGCTGTaGCCAGCCCAACTCCAGGAT | + |
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Preference number: 2 (lower is better) Translates to: KHQCPGLDTHCYTRSRGPYIAWL*PAQLQD Trigger: ATCCTGGAGTTGGGCTGGTCACAGCCATGCGATGTA...GGGCCCCCTGCTCCTTGTGTAGCAGTGGGTGTCCAATCCAGGACACTGGTGCTT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000128318.8 |
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| 3UTR-3UTR GCA 90 bp | AAGCACCAGTGTCCTGGATTGGACACCCACTGCTACACAAGGAGCAGGGGGCCCCTGGTTACGTCATTCTaGCCCCCATCCACCTCCACA | + |
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Preference number: 2 (lower is better) Translates to: KHQCPGLDTHCYTRSRGPLVTSF*PPSTST Trigger: TGTGGAGGTGGATGGGGGGCAGAATGACGTAACCAG...GGGCCCCCTGCTCCTTGTGTAGCAGTGGGTGTCCAATCCAGGACACTGGTGCTT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 4 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 ENSMUST00000128318.8 |
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| 3UTR-3UTR TCA 90 bp | AAGCACCAGTGTCCTGGATTGGACACCCACTGCTACACAAGGAGCAGGGGGCCCCACATGAGGGGCAGATaGGGTTGGGAGAGTGTAAAT | + |
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Preference number: 2 (lower is better) Translates to: KHQCPGLDTHCYTRSRGPHMRGR*GWESVN Trigger: ATTTACACTCTCCCAACCTCATCTGCCCCTCATGTG...GGGCCCCCTGCTCCTTGTGTAGCAGTGGGTGTCCAATCCAGGACACTGGTGCTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 ENSMUST00000128318.8 |
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| 3UTR-3UTR CCA 90 bp | AAGCACCAGTGTCCTGGATTGGACACCCACTGCTACACAAGGAGCAGGGGGCCCACCAGTGTCCTGGATTaGACACCCACTGCTACACAA | + |
|
Preference number: 2 (lower is better) Translates to: KHQCPGLDTHCYTRSRGPTSVLD*TPTATQ Trigger: TTGTGTAGCAGTGGGTGTCCAATCCAGGACACTGGT...GGGCCCCCTGCTCCTTGTGTAGCAGTGGGTGTCCAATCCAGGACACTGGTGCTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 ENSMUST00000128318.8 |
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| 3UTR-3UTR CCA 90 bp | AAGCACCAGTGTCCTGGATTGGACACCCACTGCTACACAAGGAGCAGGGGGCCCAAAGCACCAGTGTCCTaGATTGGACACCCACTGCTA | + |
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Preference number: 2 (lower is better) Translates to: KHQCPGLDTHCYTRSRGPKAPVS*IGHPLL Trigger: TAGCAGTGGGTGTCCAATCCAGGACACTGGTGCTTT...GGGCCCCCTGCTCCTTGTGTAGCAGTGGGTGTCCAATCCAGGACACTGGTGCTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 ENSMUST00000128318.8 |
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| 3UTR-3UTR TCA 90 bp | AAGCACCAGTGTCCTGGATTGGACACCCACTGCTACACAAGGAGCAGGGGGCCCATACATGTCAGGGGTTaGATCGATAGGTACAAGTTC | + |
|
Preference number: 2 (lower is better) Translates to: KHQCPGLDTHCYTRSRGPIHVRG*IDRYKF Trigger: GAACTTGTACCTATCGATTCAACCCCTGACATGTAT...GGGCCCCCTGCTCCTTGTGTAGCAGTGGGTGTCCAATCCAGGACACTGGTGCTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 ENSMUST00000128318.8 |
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| 3UTR-3UTR CCA 90 bp | ATATTTCTGTTTTCTTGTCTTTCTGATCATCCGAGAAGGGACAGGACCCAGGATACCAGTGTCCTGGATTaGACACCCACTGCTACACAA | + |
|
Preference number: 2 (lower is better) Translates to: IFLFSCLSDHPRRDRTQDTSVLD*TPTATQ Trigger: TTGTGTAGCAGTGGGTGTCCAATCCAGGACACTGGT...ATCCTGGGTCCTGTCCCTTCTCGGATGATCAGAAAGACAAGAAAACAGAAATAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128318.8 |
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| 3UTR-3UTR TCA 90 bp | ATATTTCTGTTTTCTTGTCTTTCTGATCATCCGAGAAGGGACAGGACCCAGGATTTTTCTCCAGCACGTTaGTTTCTAGTCGGGCTGCTT | + |
|
Preference number: 2 (lower is better) Translates to: IFLFSCLSDHPRRDRTQDFSPAR*FLVGLL Trigger: AAGCAGCCCGACTAGAAATCAACGTGCTGGAGAAAA...ATCCTGGGTCCTGTCCCTTCTCGGATGATCAGAAAGACAAGAAAACAGAAATAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000128318.8 |
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| 3UTR-3UTR CAA 90 bp | GGTTGGGAGAGTGTAAATAGTAGTATATACATGTCAGGGGTTGAATCGATAGGTCACCAGTGTCCTGGATaGGACACCCACTGCTACACA | + |
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Preference number: 3 (lower is better) Translates to: GWESVNSSIYMSGVESIGHQCPG*DTHCYT Trigger: TGTGTAGCAGTGGGTGTCCAATCCAGGACACTGGTG...ACCTATCGATTCAACCCCTGACATGTATATACTACTATTTACACTCTCCCAACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 ENSMUST00000128318.8 |
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| CDS-3UTR TCA 90 bp | AAAGCACCAGTGTCCTGGATTGGACACCCACTGCTACACAAGGAGCAGGGGGCCGTGAAGATGAGCGGCTaGATGTCCGGCTCCGTCTCC | + |
|
Preference number: 4 (lower is better) Translates to: KAPVSWIGHPLLHKEQGAVKMSG*MSGSVS Trigger: GGAGACGGAGCCGGACATTCAGCCGCTCATCTTCAC...GGCCCCCTGCTCCTTGTGTAGCAGTGGGTGTCCAATCCAGGACACTGGTGCTTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 |
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| CDS-3UTR GCA 90 bp | AAGCACCAGTGTCCTGGATTGGACACCCACTGCTACACAAGGAGCAGGGGGCCCCCCGGCTGTAGTCATTaGGCCTGTAGCTGCCACAGT | + |
|
Preference number: 4 (lower is better) Translates to: KHQCPGLDTHCYTRSRGPPGCSH*ACSCHS Trigger: ACTGTGGCAGCTACAGGCGCAATGACTACAGCCGGG...GGGCCCCCTGCTCCTTGTGTAGCAGTGGGTGTCCAATCCAGGACACTGGTGCTT 60% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt. Matches the following 4 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 ENSMUST00000128318.8 |
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| CDS-3UTR TCA 90 bp | AAGCACCAGTGTCCTGGATTGGACACCCACTGCTACACAAGGAGCAGGGGGCCCCCGGTCACTGCTACTTaGCCAGGAGCGACTTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: KHQCPGLDTHCYTRSRGPPVTAT*PGATSS Trigger: AGAAGAAGTCGCTCCTGGTCAAGTAGCAGTGACCGG...GGGCCCCCTGCTCCTTGTGTAGCAGTGGGTGTCCAATCCAGGACACTGGTGCTT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 4 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 ENSMUST00000128318.8 |
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| CDS-3UTR GCA 90 bp | AAAGCACCAGTGTCCTGGATTGGACACCCACTGCTACACAAGGAGCAGGGGGCCCCCGGCTGTAGTCATTaGGCCTGTAGCTGCCACAGT | + |
|
Preference number: 4 (lower is better) Translates to: KAPVSWIGHPLLHKEQGAPGCSH*ACSCHS Trigger: ACTGTGGCAGCTACAGGCGCAATGACTACAGCCGGG...GGCCCCCTGCTCCTTGTGTAGCAGTGGGTGTCCAATCCAGGACACTGGTGCTTT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 4 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 ENSMUST00000128318.8 |
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| CDS-3UTR GCA 90 bp | AAAAGCACCAGTGTCCTGGATTGGACACCCACTGCTACACAAGGAGCAGGGGGCGCTCTCCGGCTGCTGTaGTGTGAAGATGAGCGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: KSTSVLDWTPTATQGAGGALRLL*CEDERL Trigger: CAGCCGCTCATCTTCACAGCACAGCAGCCGGAGAGC...GCCCCCTGCTCCTTGTGTAGCAGTGGGTGTCCAATCCAGGACACTGGTGCTTTT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000121931.8 |
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| CDS-3UTR TCA 90 bp | AAAAGCACCAGTGTCCTGGATTGGACACCCACTGCTACACAAGGAGCAGGGGGCTTGAAGATGAGCGGCTaGATGTCCGGCTCCGTCTCC | + |
|
Preference number: 4 (lower is better) Translates to: KSTSVLDWTPTATQGAGGLKMSG*MSGSVS Trigger: GGAGACGGAGCCGGACATTCAGCCGCTCATCTTCAA...GCCCCCTGCTCCTTGTGTAGCAGTGGGTGTCCAATCCAGGACACTGGTGCTTTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000128318.8 |
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| CDS-3UTR GCA 90 bp | AAAAGCACCAGTGTCCTGGATTGGACACCCACTGCTACACAAGGAGCAGGGGGCCCCGGCTGTAGTCATTaGGCCTGTAGCTGCCACAGT | + |
|
Preference number: 4 (lower is better) Translates to: KSTSVLDWTPTATQGAGGPGCSH*ACSCHS Trigger: ACTGTGGCAGCTACAGGCGCAATGACTACAGCCGGG...GCCCCCTGCTCCTTGTGTAGCAGTGGGTGTCCAATCCAGGACACTGGTGCTTTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 ENSMUST00000128318.8 |
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| CDS-3UTR GCA 90 bp | ACCAGTGTCCTGGATTGGACACCCACTGCTACACAAGGAGCAGGGGGCCCAAAGTCTTGGCTCTCCGGCTaGTGTGCTGTGAAGATGAGC | + |
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Preference number: 4 (lower is better) Translates to: TSVLDWTPTATQGAGGPKSWLSG*CAVKMS Trigger: GCTCATCTTCACAGCACAGCAGCCGGAGAGCCAAGA...CTTTGGGCCCCCTGCTCCTTGTGTAGCAGTGGGTGTCCAATCCAGGACACTGGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000121931.8 |
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| CDS-3UTR TCA 90 bp | AAAAGCACCAGTGTCCTGGATTGGACACCCACTGCTACACAAGGAGCAGGGGGCCCGGTCACTGCTACTTaGCCAGGAGCGACTTCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: KSTSVLDWTPTATQGAGGPVTAT*PGATSS Trigger: AGAAGAAGTCGCTCCTGGTCAAGTAGCAGTGACCGG...GCCCCCTGCTCCTTGTGTAGCAGTGGGTGTCCAATCCAGGACACTGGTGCTTTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 ENSMUST00000128318.8 |
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| CDS-3UTR TCA 90 bp | AAAAGCACCAGTGTCCTGGATTGGACACCCACTGCTACACAAGGAGCAGGGGGCTACATCGCATGGCTGTaGCCAGCCCAACTCCAGGAT | + |
|
Preference number: 4 (lower is better) Translates to: KSTSVLDWTPTATQGAGGYIAWL*PAQLQD Trigger: ATCCTGGAGTTGGGCTGGTCACAGCCATGCGATGTA...GCCCCCTGCTCCTTGTGTAGCAGTGGGTGTCCAATCCAGGACACTGGTGCTTTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 |
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| CDS-3UTR GCA 90 bp | TCCTGGATTGGACACCCACTGCTACACAAGGAGCAGGGGGCCCAAAGCCTAATTCCCGGCTGTAGTCATTaGGCCTGTAGCTGCCACAGT | + |
|
Preference number: 4 (lower is better) Translates to: SWIGHPLLHKEQGAQSLIPGCSH*ACSCHS Trigger: ACTGTGGCAGCTACAGGCGCAATGACTACAGCCGGG...AATTAGGCTTTGGGCCCCCTGCTCCTTGTGTAGCAGTGGGTGTCCAATCCAGGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 ENSMUST00000128318.8 |
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| CDS-3UTR CCA 90 bp | ACCAGTGTCCTGGATTGGACACCCACTGCTACACAAGGAGCAGGGGGCCCAAAGCTGTTGTCATGGGTCTaGAAGAGGGTGAAGCCAACG | + |
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Preference number: 4 (lower is better) Translates to: TSVLDWTPTATQGAGGPKLLSWV*KRVKPT Trigger: CGTTGGCTTCACCCTCTTCCAGACCCATGACAACAG...CTTTGGGCCCCCTGCTCCTTGTGTAGCAGTGGGTGTCCAATCCAGGACACTGGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 |
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| CDS-3UTR TCA 90 bp | TCCTGGATTGGACACCCACTGCTACACAAGGAGCAGGGGGCCCAAAGCCTAATTCCGGTCACTGCTACTTaGCCAGGAGCGACTTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: SWIGHPLLHKEQGAQSLIPVTAT*PGATSS Trigger: AGAAGAAGTCGCTCCTGGTCAAGTAGCAGTGACCGG...AATTAGGCTTTGGGCCCCCTGCTCCTTGTGTAGCAGTGGGTGTCCAATCCAGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 ENSMUST00000128318.8 |
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| CDS-3UTR TCA 90 bp | TCCTGGATTGGACACCCACTGCTACACAAGGAGCAGGGGGCCCAAAGCCTAATTTACATCGCATGGCTGTaGCCAGCCCAACTCCAGGAT | + |
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Preference number: 4 (lower is better) Translates to: SWIGHPLLHKEQGAQSLIYIAWL*PAQLQD Trigger: ATCCTGGAGTTGGGCTGGTCACAGCCATGCGATGTA...AATTAGGCTTTGGGCCCCCTGCTCCTTGTGTAGCAGTGGGTGTCCAATCCAGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 |
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| CDS-3UTR CCA 90 bp | AAAAGCACCAGTGTCCTGGATTGGACACCCACTGCTACACAAGGAGCAGGGGGCCTGTTGTCATGGGTCTaGAAGAGGGTGAAGCCAACG | + |
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Preference number: 4 (lower is better) Translates to: KSTSVLDWTPTATQGAGGLLSWV*KRVKPT Trigger: CGTTGGCTTCACCCTCTTCCAGACCCATGACAACAG...GCCCCCTGCTCCTTGTGTAGCAGTGGGTGTCCAATCCAGGACACTGGTGCTTTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 |
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| CDS-3UTR TCA 90 bp | AAAGCACCAGTGTCCTGGATTGGACACCCACTGCTACACAAGGAGCAGGGGGCCTTTTCTCCAGCACGTTaGTTTCTAGTCGGGCTGCTT | + |
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Preference number: 4 (lower is better) Translates to: KAPVSWIGHPLLHKEQGAFSPAR*FLVGLL Trigger: AAGCAGCCCGACTAGAAATCAACGTGCTGGAGAAAA...GGCCCCCTGCTCCTTGTGTAGCAGTGGGTGTCCAATCCAGGACACTGGTGCTTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 |
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| CDS-3UTR TCA 90 bp | TCCTGGATTGGACACCCACTGCTACACAAGGAGCAGGGGGCCCAAAGCCTAATTGGGTCTGGAAGAGGGTaGAGCCAACGTAGTACTCAA | + |
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Preference number: 4 (lower is better) Translates to: SWIGHPLLHKEQGAQSLIGSGRG*SQRSTQ Trigger: TTGAGTACTACGTTGGCTTCACCCTCTTCCAGACCC...AATTAGGCTTTGGGCCCCCTGCTCCTTGTGTAGCAGTGGGTGTCCAATCCAGGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 |
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| CDS-3UTR TCA 90 bp | AAAAGCACCAGTGTCCTGGATTGGACACCCACTGCTACACAAGGAGCAGGGGGCTTTTCTCCAGCACGTTaGTTTCTAGTCGGGCTGCTT | + |
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Preference number: 4 (lower is better) Translates to: KSTSVLDWTPTATQGAGGFSPAR*FLVGLL Trigger: AAGCAGCCCGACTAGAAATCAACGTGCTGGAGAAAA...GCCCCCTGCTCCTTGTGTAGCAGTGGGTGTCCAATCCAGGACACTGGTGCTTTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 |
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| CDS-3UTR TCA 90 bp | ACCAGTGTCCTGGATTGGACACCCACTGCTACACAAGGAGCAGGGGGCCCAAAGGTTTTCTTGTCTTTCTaGTCATCCGAGAAGGGACAG | + |
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Preference number: 4 (lower is better) Translates to: TSVLDWTPTATQGAGGPKVFLSF*SSEKGQ Trigger: CTGTCCCTTCTCGGATGATCAGAAAGACAAGAAAAC...CTTTGGGCCCCCTGCTCCTTGTGTAGCAGTGGGTGTCCAATCCAGGACACTGGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 |
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| CDS-3UTR CCA 90 bp | AAAAGCACCAGTGTCCTGGATTGGACACCCACTGCTACACAAGGAGCAGGGGGCGTCAACTTGTTATCATaGAGGAACTTGACGGCCTGG | + |
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Preference number: 4 (lower is better) Translates to: KSTSVLDWTPTATQGAGGVNLLS*RNLTAW Trigger: CCAGGCCGTCAAGTTCCTCCATGATAACAAGTTGAC...GCCCCCTGCTCCTTGTGTAGCAGTGGGTGTCCAATCCAGGACACTGGTGCTTTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 |
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| CDS-3UTR TCA 90 bp | TCCTGGATTGGACACCCACTGCTACACAAGGAGCAGGGGGCCCAAAGCCTAATTTTTTCTCCAGCACGTTaGTTTCTAGTCGGGCTGCTT | + |
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Preference number: 4 (lower is better) Translates to: SWIGHPLLHKEQGAQSLIFSPAR*FLVGLL Trigger: AAGCAGCCCGACTAGAAATCAACGTGCTGGAGAAAA...AATTAGGCTTTGGGCCCCCTGCTCCTTGTGTAGCAGTGGGTGTCCAATCCAGGA 52% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt. Matches the following 3 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 |
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| CDS-3UTR TCA 90 bp | AAAAGCACCAGTGTCCTGGATTGGACACCCACTGCTACACAAGGAGCAGGGGGCGTTTTCTTGTCTTTCTaGTCATCCGAGAAGGGACAG | + |
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Preference number: 4 (lower is better) Translates to: KSTSVLDWTPTATQGAGGVFLSF*SSEKGQ Trigger: CTGTCCCTTCTCGGATGATCAGAAAGACAAGAAAAC...GCCCCCTGCTCCTTGTGTAGCAGTGGGTGTCCAATCCAGGACACTGGTGCTTTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 |
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| CDS-3UTR CCA 90 bp | TCCTGGATTGGACACCCACTGCTACACAAGGAGCAGGGGGCCCAAAGCCTAATTGTCAACTTGTTATCATaGAGGAACTTGACGGCCTGG | + |
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Preference number: 4 (lower is better) Translates to: SWIGHPLLHKEQGAQSLIVNLLS*RNLTAW Trigger: CCAGGCCGTCAAGTTCCTCCATGATAACAAGTTGAC...AATTAGGCTTTGGGCCCCCTGCTCCTTGTGTAGCAGTGGGTGTCCAATCCAGGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 |
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| CDS-3UTR TCA 90 bp | TCCTGGATTGGACACCCACTGCTACACAAGGAGCAGGGGGCCCAAAGCCTAATTGTTTTCTTGTCTTTCTaGTCATCCGAGAAGGGACAG | + |
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Preference number: 4 (lower is better) Translates to: SWIGHPLLHKEQGAQSLIVFLSF*SSEKGQ Trigger: CTGTCCCTTCTCGGATGATCAGAAAGACAAGAAAAC...AATTAGGCTTTGGGCCCCCTGCTCCTTGTGTAGCAGTGGGTGTCCAATCCAGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 |
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| CDS-3UTR TCA 90 bp | GGTTGGGAGAGTGTAAATAGTAGTATATACATGTCAGGGGTTGAATCGATAGGTGTGAAGATGAGCGGCTaGATGTCCGGCTCCGTCTCC | + |
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Preference number: 4 (lower is better) Translates to: GWESVNSSIYMSGVESIGVKMSG*MSGSVS Trigger: GGAGACGGAGCCGGACATTCAGCCGCTCATCTTCAC...ACCTATCGATTCAACCCCTGACATGTATATACTACTATTTACACTCTCCCAACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 |
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| CDS-3UTR TCA 90 bp | GGTTGGGAGAGTGTAAATAGTAGTATATACATGTCAGGGGTTGAATCGATAGGTTACATCGCATGGCTGTaGCCAGCCCAACTCCAGGAT | + |
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Preference number: 4 (lower is better) Translates to: GWESVNSSIYMSGVESIGYIAWL*PAQLQD Trigger: ATCCTGGAGTTGGGCTGGTCACAGCCATGCGATGTA...ACCTATCGATTCAACCCCTGACATGTATATACTACTATTTACACTCTCCCAACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 |
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| CDS-3UTR TCA 90 bp | GGTTGGGAGAGTGTAAATAGTAGTATATACATGTCAGGGGTTGAATCGATAGGTGGGTCTGGAAGAGGGTaGAGCCAACGTAGTACTCAA | + |
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Preference number: 4 (lower is better) Translates to: GWESVNSSIYMSGVESIGGSGRG*SQRSTQ Trigger: TTGAGTACTACGTTGGCTTCACCCTCTTCCAGACCC...ACCTATCGATTCAACCCCTGACATGTATATACTACTATTTACACTCTCCCAACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 |
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| CDS-3UTR CCA 90 bp | GGTTGGGAGAGTGTAAATAGTAGTATATACATGTCAGGGGTTGAATCGATAGGTCTGTTGTCATGGGTCTaGAAGAGGGTGAAGCCAACG | + |
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Preference number: 4 (lower is better) Translates to: GWESVNSSIYMSGVESIGLLSWV*KRVKPT Trigger: CGTTGGCTTCACCCTCTTCCAGACCCATGACAACAG...ACCTATCGATTCAACCCCTGACATGTATATACTACTATTTACACTCTCCCAACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 |
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| CDS-3UTR GCA 90 bp | GGTTGGGAGAGTGTAAATAGTAGTATATACATGTCAGGGGTTGAATCGATAGGTTCCCTTCTCCTAAGGTaGTTACAATTTCATATCGCT | + |
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Preference number: 4 (lower is better) Translates to: GWESVNSSIYMSGVESIGSLLLR*LQFHIA Trigger: AGCGATATGAAATTGTAAGCACCTTAGGAGAAGGGA...ACCTATCGATTCAACCCCTGACATGTATATACTACTATTTACACTCTCCCAACC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 |
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| CDS GCA 90 bp | ACCGCCGATCGTACAGCCGCCGATCGGACGAATGGTCATCATAGCTaGTTCGGGACCGAACGTGGTAGCTGTCCTCCCTCCGCCGCCGCC | + |
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Preference number: 5 (lower is better) Translates to: TADRTAADRTNGHHS*FGTERGSCPPSAAA Trigger: GGCGGCGGCGGAGGGAGGACAGCTACCACGTTCGGTCCCGAAGCAGCTATGATGACCATTCGTCCGATCGGCGGCTGTACGATCGGCGGT 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000121212.9 ENSMUST00000121931.8 ENSMUST00000128318.8 ENSMUST00000148265.8 |
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| CDS GCA 90 bp | AGTCTGTGTCGTAGTAAGCCTCCCCTCTGTCCCGGCTGTAGTCATTaGGCCTGTAGCTGCCACAGTACCGCCGATCGTACAGCCGCCGAT | + |
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Preference number: 5 (lower is better) Translates to: SLCRSKPPLCPGCSH*ACSCHSTADRTAAD Trigger: ATCGGCGGCTGTACGATCGGCGGTACTGTGGCAGCTACAGGCGCAATGACTACAGCCGGGACAGAGGGGAGGCTTACTACGACACAGACT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 ENSMUST00000128318.8 ENSMUST00000148265.8 |
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| CDS-3UTR CAA 90 bp | AAAGCACCAGTGTCCTGGATTGGACACCCACTGCTACACAAGGAGCAGGGGGCCGATCTTCAGGGCAACTaGTGTTCCGCCCCTGCGATG | + |
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Preference number: 5 (lower is better) Translates to: KAPVSWIGHPLLHKEQGADLQGN*CSAPAM Trigger: CATCGCAGGGGCGGAACACAAGTTGCCCTGAAGATC...GGCCCCCTGCTCCTTGTGTAGCAGTGGGTGTCCAATCCAGGACACTGGTGCTTT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 |
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| CDS-3UTR CAA 90 bp | AAGCACCAGTGTCCTGGATTGGACACCCACTGCTACACAAGGAGCAGGGGGCCCTTATCATGGAGGAACTaGACGGCCTGGCAGAGCTGG | + |
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Preference number: 5 (lower is better) Translates to: KHQCPGLDTHCYTRSRGPLSWRN*TAWQSW Trigger: CCAGCTCTGCCAGGCCGTCAAGTTCCTCCATGATAA...GGGCCCCCTGCTCCTTGTGTAGCAGTGGGTGTCCAATCCAGGACACTGGTGCTT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 |
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| CDS-3UTR CAA 90 bp | ACCAGTGTCCTGGATTGGACACCCACTGCTACACAAGGAGCAGGGGGCCCAAAGTCCGGTCACTGCTACTaGACCAGGAGCGACTTCTTC | + |
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Preference number: 5 (lower is better) Translates to: TSVLDWTPTATQGAGGPKSGHCY*TRSDFF Trigger: GAAGAAGTCGCTCCTGGTCAAGTAGCAGTGACCGGA...CTTTGGGCCCCCTGCTCCTTGTGTAGCAGTGGGTGTCCAATCCAGGACACTGGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 ENSMUST00000128318.8 |
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| CDS-3UTR CAA 90 bp | AAAAGCACCAGTGTCCTGGATTGGACACCCACTGCTACACAAGGAGCAGGGGGCTCCCACAACTTGGTGTaGGGTGGCTCAGTCCGAAGG | + |
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Preference number: 5 (lower is better) Translates to: KSTSVLDWTPTATQGAGGSHNLV*GGSVRR Trigger: CCTTCGGACTGAGCCACCCAACACCAAGTTGTGGGA...GCCCCCTGCTCCTTGTGTAGCAGTGGGTGTCCAATCCAGGACACTGGTGCTTTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 |
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| CDS-3UTR CAA 90 bp | AAAAGCACCAGTGTCCTGGATTGGACACCCACTGCTACACAAGGAGCAGGGGGCTCCGGTCACTGCTACTaGACCAGGAGCGACTTCTTC | + |
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Preference number: 5 (lower is better) Translates to: KSTSVLDWTPTATQGAGGSGHCY*TRSDFF Trigger: GAAGAAGTCGCTCCTGGTCAAGTAGCAGTGACCGGA...GCCCCCTGCTCCTTGTGTAGCAGTGGGTGTCCAATCCAGGACACTGGTGCTTTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 ENSMUST00000128318.8 |
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| CDS-3UTR CAA 90 bp | TCCTGGATTGGACACCCACTGCTACACAAGGAGCAGGGGGCCCAAAGCCTAATTTCCCACAACTTGGTGTaGGGTGGCTCAGTCCGAAGG | + |
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Preference number: 5 (lower is better) Translates to: SWIGHPLLHKEQGAQSLISHNLV*GGSVRR Trigger: CCTTCGGACTGAGCCACCCAACACCAAGTTGTGGGA...AATTAGGCTTTGGGCCCCCTGCTCCTTGTGTAGCAGTGGGTGTCCAATCCAGGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 |
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| CDS-3UTR CAA 90 bp | TCCTGGATTGGACACCCACTGCTACACAAGGAGCAGGGGGCCCAAAGCCTAATTTCCGGTCACTGCTACTaGACCAGGAGCGACTTCTTC | + |
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Preference number: 5 (lower is better) Translates to: SWIGHPLLHKEQGAQSLISGHCY*TRSDFF Trigger: GAAGAAGTCGCTCCTGGTCAAGTAGCAGTGACCGGA...AATTAGGCTTTGGGCCCCCTGCTCCTTGTGTAGCAGTGGGTGTCCAATCCAGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 ENSMUST00000128318.8 |
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| CDS-3UTR CAA 90 bp | AAGCACCAGTGTCCTGGATTGGACACCCACTGCTACACAAGGAGCAGGGGGCCCATTTTCTCCAGCACGTaGATTTCTAGTCGGGCTGCT | + |
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Preference number: 5 (lower is better) Translates to: KHQCPGLDTHCYTRSRGPIFSST*ISSRAA Trigger: AGCAGCCCGACTAGAAATCAACGTGCTGGAGAAAAT...GGGCCCCCTGCTCCTTGTGTAGCAGTGGGTGTCCAATCCAGGACACTGGTGCTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 |
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| CDS-3UTR CAA 90 bp | TCCTGGATTGGACACCCACTGCTACACAAGGAGCAGGGGGCCCAAAGCCTAATTTTATCATGGAGGAACTaGACGGCCTGGCAGAGCTGG | + |
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Preference number: 5 (lower is better) Translates to: SWIGHPLLHKEQGAQSLILSWRN*TAWQSW Trigger: CCAGCTCTGCCAGGCCGTCAAGTTCCTCCATGATAA...AATTAGGCTTTGGGCCCCCTGCTCCTTGTGTAGCAGTGGGTGTCCAATCCAGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 |
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| CDS-3UTR CAA 90 bp | ACCAGTGTCCTGGATTGGACACCCACTGCTACACAAGGAGCAGGGGGCCCAAAGATTTTCTCCAGCACGTaGATTTCTAGTCGGGCTGCT | + |
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Preference number: 5 (lower is better) Translates to: TSVLDWTPTATQGAGGPKIFSST*ISSRAA Trigger: AGCAGCCCGACTAGAAATCAACGTGCTGGAGAAAAT...CTTTGGGCCCCCTGCTCCTTGTGTAGCAGTGGGTGTCCAATCCAGGACACTGGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 |
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| CDS-3UTR CAA 90 bp | AAGCACCAGTGTCCTGGATTGGACACCCACTGCTACACAAGGAGCAGGGGGCCCTGGACACAGAGGTTCTaGTTGTCAGGATCTTTCTCA | + |
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Preference number: 5 (lower is better) Translates to: KHQCPGLDTHCYTRSRGPWTQRF*LSGSFS Trigger: TGAGAAAGATCCTGACAACAAGAACCTCTGTGTCCA...GGGCCCCCTGCTCCTTGTGTAGCAGTGGGTGTCCAATCCAGGACACTGGTGCTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 |
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| CDS GCA 90 bp | TCCGCCTTCTGTGTTTCCTTCGGCTGCTGCGCTGGCTTCGGTAACTaGTGTTCTCTCGATGGTATTCATAGGACTGCCGAAAGTCTGTGT | + |
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Preference number: 5 (lower is better) Translates to: SAFCVSFGCCAGFGN*CSLDGIHRTAESLC Trigger: ACACAGACTTTCGGCAGTCCTATGAATACCATCGAGAGAACAGCAGTTACCGAAGCCAGCGCAGCAGCCGAAGGAAACACAGAAGGCGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 ENSMUST00000128318.8 ENSMUST00000148265.8 |
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| CDS-3UTR CAA 90 bp | AAAAGCACCAGTGTCCTGGATTGGACACCCACTGCTACACAAGGAGCAGGGGGCTGGACACAGAGGTTCTaGTTGTCAGGATCTTTCTCA | + |
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Preference number: 5 (lower is better) Translates to: KSTSVLDWTPTATQGAGGWTQRF*LSGSFS Trigger: TGAGAAAGATCCTGACAACAAGAACCTCTGTGTCCA...GCCCCCTGCTCCTTGTGTAGCAGTGGGTGTCCAATCCAGGACACTGGTGCTTTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 |
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| CDS-3UTR CAA 90 bp | GGTTGGGAGAGTGTAAATAGTAGTATATACATGTCAGGGGTTGAATCGATAGGTGATCTTCAGGGCAACTaGTGTTCCGCCCCTGCGATG | + |
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Preference number: 5 (lower is better) Translates to: GWESVNSSIYMSGVESIGDLQGN*CSAPAM Trigger: CATCGCAGGGGCGGAACACAAGTTGCCCTGAAGATC...ACCTATCGATTCAACCCCTGACATGTATATACTACTATTTACACTCTCCCAACC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 |
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| CDS-3UTR CAA 90 bp | GGTTGGGAGAGTGTAAATAGTAGTATATACATGTCAGGGGTTGAATCGATAGGTTCCCACAACTTGGTGTaGGGTGGCTCAGTCCGAAGG | + |
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Preference number: 5 (lower is better) Translates to: GWESVNSSIYMSGVESIGSHNLV*GGSVRR Trigger: CCTTCGGACTGAGCCACCCAACACCAAGTTGTGGGA...ACCTATCGATTCAACCCCTGACATGTATATACTACTATTTACACTCTCCCAACC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 |
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| CDS GCA 72 bp | CGTACAGCCGCCGATCGGACGAATGGTCATCATAGCTaGTTCGGGACCGAACGTGGTAGCTGTCCTCCCTCC | + |
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Preference number: 6 (lower is better) Translates to: RTAADRTNGHHS*FGTERGSCPPS Trigger: GGAGGGAGGACAGCTACCACGTTCGGTCCCGAAGCAGCTATGATGACCATTCGTCCGATCGGCGGCTGTACG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000121212.9 ENSMUST00000121931.8 ENSMUST00000128318.8 ENSMUST00000148265.8 |
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| CDS GCA 72 bp | CGTAGTAAGCCTCCCCTCTGTCCCGGCTGTAGTCATTaGGCCTGTAGCTGCCACAGTACCGCCGATCGTACA | + |
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Preference number: 6 (lower is better) Translates to: RSKPPLCPGCSH*ACSCHSTADRT Trigger: TGTACGATCGGCGGTACTGTGGCAGCTACAGGCGCAATGACTACAGCCGGGACAGAGGGGAGGCTTACTACG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 ENSMUST00000128318.8 ENSMUST00000148265.8 |
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| CDS GCA 72 bp | TGTGTTTCCTTCGGCTGCTGCGCTGGCTTCGGTAACTaGTGTTCTCTCGATGGTATTCATAGGACTGCCGAA | + |
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Preference number: 6 (lower is better) Translates to: CVSFGCCAGFGN*CSLDGIHRTAE Trigger: TTCGGCAGTCCTATGAATACCATCGAGAGAACAGCAGTTACCGAAGCCAGCGCAGCAGCCGAAGGAAACACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000090927.12 ENSMUST00000121212.9 ENSMUST00000121931.8 ENSMUST00000128318.8 ENSMUST00000148265.8 |
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