Pregenerated sensors for CLK1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026034Ensembl transcript IDs: ENSMUST00000034868.14, ENSMUST00000148330.8, ENSMUST00000151338.8
Found 77 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TTGAGCAGCTTCACAGTATCTATCCACATTTTTAACTATTTTTACTaGTACACGTCTACCTCCCACTTTATGATCGATGCATTCCACCAC | + |
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Preference number: 1 (lower is better) Translates to: LSSFTVSIHIFNYFY*YTSTSHFMIDAFHH Trigger: GTGGTGGAATGCATCGATCATAAAGTGGGAGGTAGACGTGTAGCAGTAAAAATAGTTAAAAATGTGGATAGATACTGTGAAGCTGCTCAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| 3UTR CAA 90 bp | ACCACTCCAACATCTGGACACAACGGAAAGTACTATGGGGGTCTGTaGTATTCAAGTGTTCCAAAACTTGTATTTCCGATTGAGCAGCTT | + |
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Preference number: 2 (lower is better) Translates to: TTPTSGHNGKYYGGL*YSSVPKLVFPIEQL Trigger: AAGCTGCTCAATCGGAAATACAAGTTTTGGAACACTTGAATACAACAGACCCCCATAGTACTTTCCGTTGTGTCCAGATGTTGGAGTGGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000148330.8 |
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| 3UTR-3UTR TCA 90 bp | GATAGCATAAACTCCTTCAGAGGTTTACAGCGCCGAGAAACATATCTGCCAGCAGGCTTCAAGTCTGTATaGGTCAATTTATTACTATGC | + |
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Preference number: 2 (lower is better) Translates to: DSINSFRGLQRRETYLPAGFKSV*VNLLLC Trigger: GCATAGTAATAAATTGACTCATACAGACTTGAAGCC...TGCTGGCAGATATGTTTCTCGGCGCTGTAAACCTCTGAAGGAGTTTATGCTATC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| 3UTR-3UTR TCA 90 bp | AATAACTTCCGGTGCTCTATAATGTCTTGTAGATACCAATGTGCTGTGGTGTTCACTTGTATTTCCGATTaGGCAGCTTCACAGTATCTA | + |
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Preference number: 2 (lower is better) Translates to: NNFRCSIMSCRYQCAVVFTCISD*AASQYL Trigger: TAGATACTGTGAAGCTGCTCAATCGGAAATACAAGT...GAACACCACAGCACATTGGTATCTACAAGACATTATAGAGCACCGGAAGTTATT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| 3UTR-3UTR GCA 90 bp | TACTATGGGGGTCTGTTGTATTCAAGTGTTCCAAAACTTGTATTTCCGATTGAGCCACTTTATGATCGATaGATTCCACCACTTTTCCGA | + |
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Preference number: 2 (lower is better) Translates to: YYGGLLYSSVPKLVFPIEPLYDR*IPPLFR Trigger: TCGGAAAAGTGGTGGAATGCATCGATCATAAAGTGG...CTCAATCGGAAATACAAGTTTTGGAACACTTGAATACAACAGACCCCCATAGTA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| 3UTR-3UTR GCA 90 bp | GGGGGTCTGTTGTATTCAAGTGTTCCAAAACTTGTATTTCCGATTGAGCAGCTTTTTAACTATTTTTACTaGTACACGTCTACCTCCCAC | + |
|
Preference number: 2 (lower is better) Translates to: GGLLYSSVPKLVFPIEQLFNYFY*YTSTSH Trigger: GTGGGAGGTAGACGTGTAGCAGTAAAAATAGTTAAA...AAGCTGCTCAATCGGAAATACAAGTTTTGGAACACTTGAATACAACAGACCCCC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt. Matches the following 2 transcripts: ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| 3UTR CAA 90 bp | ACGGAAAGTACTATGGGGGTCTGTTGTATTCAAGTGTTCCAAAACTaGTATTTCCGATTGAGCAGCTTCACAGTATCTATCCACATTTTT | + |
|
Preference number: 2 (lower is better) Translates to: TESTMGVCCIQVFQN*YFRLSSFTVSIHIF Trigger: AAAAATGTGGATAGATACTGTGAAGCTGCTCAATCGGAAATACAAGTTTTGGAACACTTGAATACAACAGACCCCCATAGTACTTTCCGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000148330.8 |
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| 3UTR-3UTR GCA 90 bp | CCCAATCTAATCGATCATGATGGAAATATCTGCGTTTCCTGGTTTTCTGTATCAGAAGTTCAAACACAATaGAAATGTGACCTCGATGCT | + |
|
Preference number: 2 (lower is better) Translates to: PNLIDHDGNICVSWFSVSEVQTQ*KCDLDA Trigger: AGCATCGAGGTCACATTTGCATTGTGTTTGAACTTC...TGATACAGAAAACCAGGAAACGCAGATATTTCCATCATGATCGATTAGATTGGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148330.8 |
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| 3UTR-3UTR CCA 90 bp | GCTTCTTTGAGAGTAATTCTTTTGGCGGGATCATACTCCAACATTTTCCCAATGAATATCTGCGTTTCCTaGTTTTCTGTATCATGTGCT | + |
|
Preference number: 2 (lower is better) Translates to: ASLRVILLAGSYSNIFPMNICVS*FSVSCA Trigger: AGCACATGATACAGAAAACCAGGAAACGCAGATATT...CATTGGGAAAATGTTGGAGTATGATCCCGCCAAAAGAATTACTCTCAAAGAAGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| 3UTR-3UTR TCA 90 bp | TTCCCTGCTATCATGAGTCGGAAAAACTGTAAATCCAAGATAATACTCGATAAGACTTGTATTTCCGATTaGGCAGCTTCACAGTATCTA | + |
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Preference number: 2 (lower is better) Translates to: FPAIMSRKNCKSKIILDKTCISD*AASQYL Trigger: TAGATACTGTGAAGCTGCTCAATCGGAAATACAAGT...CTTATCGAGTATTATCTTGGATTTACAGTTTTTCCGACTCATGATAGCAGGGAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| 3UTR-3UTR GCA 90 bp | CAGTCTGTAAGATTCCTTTCAGAGCACTGTGTTTATAAATCACGTATGCTTTTTCCACTTTATGATCGATaGATTCCACCACTTTTCCGA | + |
|
Preference number: 2 (lower is better) Translates to: QSVRFLSEHCVYKSRMLFPLYDR*IPPLFR Trigger: TCGGAAAAGTGGTGGAATGCATCGATCATAAAGTGG...AAAAAGCATACGTGATTTATAAACACAGTGCTCTGAAAGGAATCTTACAGACTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| 3UTR-3UTR GCA 90 bp | CAGTCTGTAAGATTCCTTTCAGAGCACTGTGTTTATAAATCACGTATGCTTTTTTTTAACTATTTTTACTaGTACACGTCTACCTCCCAC | + |
|
Preference number: 2 (lower is better) Translates to: QSVRFLSEHCVYKSRMLFFNYFY*YTSTSH Trigger: GTGGGAGGTAGACGTGTAGCAGTAAAAATAGTTAAA...AAAAAGCATACGTGATTTATAAACACAGTGCTCTGAAAGGAATCTTACAGACTG 36% GC, longest homopolymer 8 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| 3UTR-3UTR GCA 90 bp | CAGTCTGTAAGATTCCTTTCAGAGCACTGTGTTTATAAATCACGTATGCTTTTTCATGATGGAAATATCTaGGTTTCCTGGTTTTCTGTA | + |
|
Preference number: 2 (lower is better) Translates to: QSVRFLSEHCVYKSRMLFHDGNI*VSWFSV Trigger: TACAGAAAACCAGGAAACGCAGATATTTCCATCATG...AAAAAGCATACGTGATTTATAAACACAGTGCTCTGAAAGGAATCTTACAGACTG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| 3UTR TCA 72 bp | CCAATGAGGTCAAAGAGAAGCTCATGTTCGGCATCCTaGGATAGCATAAACTCCTTCAGAGGTTTACAGCGC | + |
|
Preference number: 3 (lower is better) Translates to: PMRSKRSSCSAS*DSINSFRGLQR Trigger: GCGCTGTAAACCTCTGAAGGAGTTTATGCTATCTCAGGATGCCGAACATGAGCTTCTCTTTGACCTCATTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| 3UTR TCA 72 bp | TTCTTTTGGCGGGATCATACTCCAACATTTTCCCAATaGGGTCAAAGAGAAGCTCATGTTCGGCATCCTGAG | + |
|
Preference number: 3 (lower is better) Translates to: FFWRDHTPTFSQ*GQREAHVRHPE Trigger: CTCAGGATGCCGAACATGAGCTTCTCTTTGACCTCATTGGGAAAATGTTGGAGTATGATCCCGCCAAAAGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| 3UTR-3UTR CAA 90 bp | AAAGGATGCTTTAGGGCTTCTTTGAGAGTAATTCTTTTGGCGGGATCATACTCCTCTGTATCATGTGCTTaGGTAGTGGTCCAAGAATCC | + |
|
Preference number: 3 (lower is better) Translates to: KGCFRASLRVILLAGSYSSVSCA*VVVQES Trigger: GGATTCTTGGACCACTACCAAAGCACATGATACAGA...GGAGTATGATCCCGCCAAAAGAATTACTCTCAAAGAAGCCCTAAAGCATCCTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| 3UTR TCA 72 bp | ACTATTTTTACTGCTACACGTCTACCTCCCACTTTATaGTCGATGCATTCCACCACTTTTCCGAAAGCACCT | + |
|
Preference number: 3 (lower is better) Translates to: TIFTATRLPPTL*SMHSTTFPKAP Trigger: AGGTGCTTTCGGAAAAGTGGTGGAATGCATCGATCATAAAGTGGGAGGTAGACGTGTAGCAGTAAAAATAGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| 3UTR GCA 72 bp | TGGAAATATCTGCGTTTCCTGGTTTTCTGTATCATGTaGTTTGGTAGTGGTCCAAGAATCCTTTCCATCATT | + |
|
Preference number: 3 (lower is better) Translates to: WKYLRFLVFCIM*FGSGPRILSII Trigger: AATGATGGAAAGGATTCTTGGACCACTACCAAAGCACATGATACAGAAAACCAGGAAACGCAGATATTTCCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| 3UTR-3UTR CAA 90 bp | CAGTCTGTAAGATTCCTTTCAGAGCACTGTGTTTATAAATCACGTATGCTTTTTAACTTGTATTTCCGATaGAGCAGCTTCACAGTATCT | + |
|
Preference number: 3 (lower is better) Translates to: QSVRFLSEHCVYKSRMLFNLYFR*SSFTVS Trigger: AGATACTGTGAAGCTGCTCAATCGGAAATACAAGTT...AAAAAGCATACGTGATTTATAAACACAGTGCTCTGAAAGGAATCTTACAGACTG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| 3UTR TCA 72 bp | GTTGTATTCAAGTGTTCCAAAACTTGTATTTCCGATTaGGCAGCTTCACAGTATCTATCCACATTTTTAACT | + |
|
Preference number: 3 (lower is better) Translates to: VVFKCSKTCISD*AASQYLSTFLT Trigger: AGTTAAAAATGTGGATAGATACTGTGAAGCTGCTCAATCGGAAATACAAGTTTTGGAACACTTGAATACAAC 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| CDS-3UTR GCA 90 bp | TATGGGGGTCTGTTGTATTCAAGTGTTCCAAAACTTGTATTTCCGATTGAGCAGCCGTGTGAATGGTGCTaGGAAGTGTGGTGGCGACTC | + |
|
Preference number: 4 (lower is better) Translates to: YGGLLYSSVPKLVFPIEQPCEWC*EVWWRL Trigger: GAGTCGCCACCACACTTCGCAGCACCATTCACACGG...CTGCTCAATCGGAAATACAAGTTTTGGAACACTTGAATACAACAGACCCCCATA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| CDS-3UTR GCA 90 bp | AAAGGATGCTTTAGGGCTTCTTTGAGAGTAATTCTTTTGGCGGGATCATACTCCATCCCGTGTGAATGGTaGTGCGAAGTGTGGTGGCGA | + |
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Preference number: 4 (lower is better) Translates to: KGCFRASLRVILLAGSYSIPCEW*CEVWWR Trigger: TCGCCACCACACTTCGCAGCACCATTCACACGGGAT...GGAGTATGATCCCGCCAAAAGAATTACTCTCAAAGAAGCCCTAAAGCATCCTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| CDS-3UTR TCA 90 bp | TATTTTTACTGCTACACGTCTACCTCCCACTTTATGATCGATGCATTCCACCACACGGGCGCTGCTATGTaGTCTCTTCTTTCTTTTGTG | + |
|
Preference number: 4 (lower is better) Translates to: YFYCYTSTSHFMIDAFHHTGAAM*SLLSFV Trigger: CACAAAAGAAAGAAGAGATCACATAGCAGCGCCCGT...GTGGTGGAATGCATCGATCATAAAGTGGGAGGTAGACGTGTAGCAGTAAAAATA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| CDS-3UTR GCA 90 bp | TTAAAAGCTAGACTGATACAGTCTGTAAGATTCCTTTCAGAGCACTGTGTTTATCCGTGTGAATGGTGCTaGGAAGTGTGGTGGCGACTC | + |
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Preference number: 4 (lower is better) Translates to: LKARLIQSVRFLSEHCVYPCEWC*EVWWRL Trigger: GAGTCGCCACCACACTTCGCAGCACCATTCACACGG...ATAAACACAGTGCTCTGAAAGGAATCTTACAGACTGTATCAGTCTAGCTTTTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000034868.14 ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| CDS-3UTR CCA 90 bp | AATAACTTCCGGTGCTCTATAATGTCTTGTAGATACCAATGTGCTGTGGTGTTCTGCTGCGAAGTGTGGTaGCGACTCCTGTGTTTACTT | + |
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Preference number: 4 (lower is better) Translates to: NNFRCSIMSCRYQCAVVFCCEVW*RLLCLL Trigger: AAGTAAACACAGGAGTCGCCACCACACTTCGCAGCA...GAACACCACAGCACATTGGTATCTACAAGACATTATAGAGCACCGGAAGTTATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| CDS-3UTR GCA 90 bp | AAAGGATGCTTTAGGGCTTCTTTGAGAGTAATTCTTTTGGCGGGATCATACTCCGAGGACTTGCTACTATaGATCTGGTATCTGCTTCCA | + |
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Preference number: 4 (lower is better) Translates to: KGCFRASLRVILLAGSYSEDLLL*IWYLLP Trigger: TGGAAGCAGATACCAGATGCATAGTAGCAAGTCCTC...GGAGTATGATCCCGCCAAAAGAATTACTCTCAAAGAAGCCCTAAAGCATCCTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| CDS-3UTR GCA 90 bp | GATAGCATAAACTCCTTCAGAGGTTTACAGCGCCGAGAAACATATCTGCCAGCAGTTTACTTTTGTAACTaGTTCTTCCACTCCTACCAG | + |
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Preference number: 4 (lower is better) Translates to: DSINSFRGLQRRETYLPAVYFCN*FFHSYQ Trigger: CTGGTAGGAGTGGAAGAAGCAGTTACAAAAGTAAAC...TGCTGGCAGATATGTTTCTCGGCGCTGTAAACCTCTGAAGGAGTTTATGCTATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| CDS-3UTR GCA 90 bp | TTAAAAGCTAGACTGATACAGTCTGTAAGATTCCTTTCAGAGCACTGTGTTTATTTCCCGTGTGAATGGTaGTGCGAAGTGTGGTGGCGA | + |
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Preference number: 4 (lower is better) Translates to: LKARLIQSVRFLSEHCVYFPCEW*CEVWWR Trigger: TCGCCACCACACTTCGCAGCACCATTCACACGGGAA...ATAAACACAGTGCTCTGAAAGGAATCTTACAGACTGTATCAGTCTAGCTTTTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034868.14 |
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| CDS-3UTR GCA 90 bp | TTAAAAGCTAGACTGATACAGTCTGTAAGATTCCTTTCAGAGCACTGTGTTTATATCCCGTGTGAATGGTaGTGCGAAGTGTGGTGGCGA | + |
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Preference number: 4 (lower is better) Translates to: LKARLIQSVRFLSEHCVYIPCEW*CEVWWR Trigger: TCGCCACCACACTTCGCAGCACCATTCACACGGGAT...ATAAACACAGTGCTCTGAAAGGAATCTTACAGACTGTATCAGTCTAGCTTTTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| CDS-3UTR TCA 90 bp | TACTATGGGGGTCTGTTGTATTCAAGTGTTCCAAAACTTGTATTTCCGATTGAGACGGGCGCTGCTATGTaGTCTCTTCTTTCTTTTGTG | + |
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Preference number: 4 (lower is better) Translates to: YYGGLLYSSVPKLVFPIETGAAM*SLLSFV Trigger: CACAAAAGAAAGAAGAGATCACATAGCAGCGCCCGT...CTCAATCGGAAATACAAGTTTTGGAACACTTGAATACAACAGACCCCCATAGTA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| CDS-3UTR GCA 90 bp | AAAGGATGCTTTAGGGCTTCTTTGAGAGTAATTCTTTTGGCGGGATCATACTCCTCTTTCTTTTGTGACTaGTGCTGCTTCTCCATGTTC | + |
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Preference number: 4 (lower is better) Translates to: KGCFRASLRVILLAGSYSSFFCD*CCFSMF Trigger: GAACATGGAGAAGCAGCAGCAGTCACAAAAGAAAGA...GGAGTATGATCCCGCCAAAAGAATTACTCTCAAAGAAGCCCTAAAGCATCCTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| CDS-3UTR GCA 90 bp | GCTTCTTTGAGAGTAATTCTTTTGGCGGGATCATACTCCAACATTTTCCCAATGTATGCATCTGGTATCTaGTTCCAGGTTCTCCATAGG | + |
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Preference number: 4 (lower is better) Translates to: ASLRVILLAGSYSNIFPMYASGI*FQVLHR Trigger: CCTATGGAGAACCTGGAAGCAGATACCAGATGCATA...CATTGGGAAAATGTTGGAGTATGATCCCGCCAAAAGAATTACTCTCAAAGAAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| CDS-3UTR GCA 90 bp | TATGGGGGTCTGTTGTATTCAAGTGTTCCAAAACTTGTATTTCCGATTGAGCAGGAGGACTTGCTACTATaGATCTGGTATCTGCTTCCA | + |
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Preference number: 4 (lower is better) Translates to: YGGLLYSSVPKLVFPIEQEDLLL*IWYLLP Trigger: TGGAAGCAGATACCAGATGCATAGTAGCAAGTCCTC...CTGCTCAATCGGAAATACAAGTTTTGGAACACTTGAATACAACAGACCCCCATA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| CDS-3UTR TCA 90 bp | TTAAAAGCTAGACTGATACAGTCTGTAAGATTCCTTTCAGAGCACTGTGTTTATGATCTTTTCCTTCGGTaGCTCTTCCCGTGTGAATGG | + |
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Preference number: 4 (lower is better) Translates to: LKARLIQSVRFLSEHCVYDLFLR*LFPCEW Trigger: CCATTCACACGGGAAGAGTCACCGAAGGAAAAGATC...ATAAACACAGTGCTCTGAAAGGAATCTTACAGACTGTATCAGTCTAGCTTTTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034868.14 |
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| CDS-3UTR GCA 90 bp | GTGTTCCAAAACTTGTATTTCCGATTGAGCAGCTTCACAGTATCTATCCACATTTATGCATCTGGTATCTaGTTCCAGGTTCTCCATAGG | + |
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Preference number: 4 (lower is better) Translates to: VFQNLYFRLSSFTVSIHIYASGI*FQVLHR Trigger: CCTATGGAGAACCTGGAAGCAGATACCAGATGCATA...AATGTGGATAGATACTGTGAAGCTGCTCAATCGGAAATACAAGTTTTGGAACAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| CDS-3UTR GCA 90 bp | AAAGGATGCTTTAGGGCTTCTTTGAGAGTAATTCTTTTGGCGGGATCATACTCCGTTTACTTTTGTAACTaGTTCTTCCACTCCTACCAG | + |
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Preference number: 4 (lower is better) Translates to: KGCFRASLRVILLAGSYSVYFCN*FFHSYQ Trigger: CTGGTAGGAGTGGAAGAAGCAGTTACAAAAGTAAAC...GGAGTATGATCCCGCCAAAAGAATTACTCTCAAAGAAGCCCTAAAGCATCCTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| CDS-3UTR CCA 90 bp | TTAAAAGCTAGACTGATACAGTCTGTAAGATTCCTTTCAGAGCACTGTGTTTATTGCTGCGAAGTGTGGTaGCGACTCCTGTGTTTACTT | + |
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Preference number: 4 (lower is better) Translates to: LKARLIQSVRFLSEHCVYCCEVW*RLLCLL Trigger: AAGTAAACACAGGAGTCGCCACCACACTTCGCAGCA...ATAAACACAGTGCTCTGAAAGGAATCTTACAGACTGTATCAGTCTAGCTTTTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000034868.14 ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| CDS-3UTR CCA 90 bp | CAGTCTGTAAGATTCCTTTCAGAGCACTGTGTTTATAAATCACGTATGCTTTTTTGCTGCGAAGTGTGGTaGCGACTCCTGTGTTTACTT | + |
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Preference number: 4 (lower is better) Translates to: QSVRFLSEHCVYKSRMLFCCEVW*RLLCLL Trigger: AAGTAAACACAGGAGTCGCCACCACACTTCGCAGCA...AAAAAGCATACGTGATTTATAAACACAGTGCTCTGAAAGGAATCTTACAGACTG 41% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 2 transcripts: ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| CDS-3UTR TCA 90 bp | TTAAAAGCTAGACTGATACAGTCTGTAAGATTCCTTTCAGAGCACTGTGTTTATACGGGCGCTGCTATGTaGTCTCTTCTTTCTTTTGTG | + |
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Preference number: 4 (lower is better) Translates to: LKARLIQSVRFLSEHCVYTGAAM*SLLSFV Trigger: CACAAAAGAAAGAAGAGATCACATAGCAGCGCCCGT...ATAAACACAGTGCTCTGAAAGGAATCTTACAGACTGTATCAGTCTAGCTTTTAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000034868.14 ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| CDS-3UTR GCA 90 bp | TATGGGGGTCTGTTGTATTCAAGTGTTCCAAAACTTGTATTTCCGATTGAGCAGTTTTGTGACTGCTGCTaGTTCTCCATGTTCCATAAT | + |
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Preference number: 4 (lower is better) Translates to: YGGLLYSSVPKLVFPIEQFCDCC*FSMFHN Trigger: ATTATGGAACATGGAGAAGCAGCAGCAGTCACAAAA...CTGCTCAATCGGAAATACAAGTTTTGGAACACTTGAATACAACAGACCCCCATA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| 3UTR CAA 72 bp | ACATCTGGACACAACGGAAAGTACTATGGGGGTCTGTaGTATTCAAGTGTTCCAAAACTTGTATTTCCGATT | + |
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Preference number: 4 (lower is better) Translates to: TSGHNGKYYGGL*YSSVPKLVFPI Trigger: AATCGGAAATACAAGTTTTGGAACACTTGAATACAACAGACCCCCATAGTACTTTCCGTTGTGTCCAGATGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000148330.8 |
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| CDS-3UTR TCA 90 bp | TTAAAAGCTAGACTGATACAGTCTGTAAGATTCCTTTCAGAGCACTGTGTTTATAACACAATGCAAATGTaGCCTCGATGCTCAAACCAC | + |
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Preference number: 4 (lower is better) Translates to: LKARLIQSVRFLSEHCVYNTMQM*PRCSNH Trigger: GTGGTTTGAGCATCGAGGTCACATTTGCATTGTGTT...ATAAACACAGTGCTCTGAAAGGAATCTTACAGACTGTATCAGTCTAGCTTTTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034868.14 |
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| CDS-3UTR GCA 90 bp | TTAAAAGCTAGACTGATACAGTCTGTAAGATTCCTTTCAGAGCACTGTGTTTATTATGCATCTGGTATCTaGTTCCAGGTTCTCCATAGG | + |
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Preference number: 4 (lower is better) Translates to: LKARLIQSVRFLSEHCVYYASGI*FQVLHR Trigger: CCTATGGAGAACCTGGAAGCAGATACCAGATGCATA...ATAAACACAGTGCTCTGAAAGGAATCTTACAGACTGTATCAGTCTAGCTTTTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000034868.14 ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| CDS-3UTR GCA 90 bp | TTAAAAGCTAGACTGATACAGTCTGTAAGATTCCTTTCAGAGCACTGTGTTTATGAGGACTTGCTACTATaGATCTGGTATCTGCTTCCA | + |
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Preference number: 4 (lower is better) Translates to: LKARLIQSVRFLSEHCVYEDLLL*IWYLLP Trigger: TGGAAGCAGATACCAGATGCATAGTAGCAAGTCCTC...ATAAACACAGTGCTCTGAAAGGAATCTTACAGACTGTATCAGTCTAGCTTTTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000034868.14 ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| CDS-3UTR TCA 90 bp | TTAAAAGCTAGACTGATACAGTCTGTAAGATTCCTTTCAGAGCACTGTGTTTATGATATGCCATCTTCCTaGTATGATCCATTCGAAACG | + |
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Preference number: 4 (lower is better) Translates to: LKARLIQSVRFLSEHCVYDMPSS*YDPFET Trigger: CGTTTCGAATGGATCATATCAGGAAGATGGCATATC...ATAAACACAGTGCTCTGAAAGGAATCTTACAGACTGTATCAGTCTAGCTTTTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034868.14 |
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| CDS-3UTR TCA 90 bp | TTAAAAGCTAGACTGATACAGTCTGTAAGATTCCTTTCAGAGCACTGTGTTTATCCAACATTTTCCCAATaGGGTCAAAGAGAAGCTCAT | + |
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Preference number: 4 (lower is better) Translates to: LKARLIQSVRFLSEHCVYPTFSQ*GQREAH Trigger: ATGAGCTTCTCTTTGACCTCATTGGGAAAATGTTGG...ATAAACACAGTGCTCTGAAAGGAATCTTACAGACTGTATCAGTCTAGCTTTTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034868.14 |
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| CDS-3UTR GCA 90 bp | TTAAAAGCTAGACTGATACAGTCTGTAAGATTCCTTTCAGAGCACTGTGTTTATTCTTTCTTTTGTGACTaGTGCTGCTTCTCCATGTTC | + |
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Preference number: 4 (lower is better) Translates to: LKARLIQSVRFLSEHCVYSFFCD*CCFSMF Trigger: GAACATGGAGAAGCAGCAGCAGTCACAAAAGAAAGA...ATAAACACAGTGCTCTGAAAGGAATCTTACAGACTGTATCAGTCTAGCTTTTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000034868.14 ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| CDS-3UTR GCA 90 bp | TTAAAAGCTAGACTGATACAGTCTGTAAGATTCCTTTCAGAGCACTGTGTTTATCCACTTTATGATCGATaGATTCCACCACTTTTCCGA | + |
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Preference number: 4 (lower is better) Translates to: LKARLIQSVRFLSEHCVYPLYDR*IPPLFR Trigger: TCGGAAAAGTGGTGGAATGCATCGATCATAAAGTGG...ATAAACACAGTGCTCTGAAAGGAATCTTACAGACTGTATCAGTCTAGCTTTTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034868.14 |
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| CDS-3UTR CCA 90 bp | TTAAAAGCTAGACTGATACAGTCTGTAAGATTCCTTTCAGAGCACTGTGTTTATCAACGGAAAGTACTATaGGGGTCTGTTGTATTCAAG | + |
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Preference number: 4 (lower is better) Translates to: LKARLIQSVRFLSEHCVYQRKVL*GSVVFK Trigger: CTTGAATACAACAGACCCCCATAGTACTTTCCGTTG...ATAAACACAGTGCTCTGAAAGGAATCTTACAGACTGTATCAGTCTAGCTTTTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034868.14 |
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| CDS-3UTR TCA 90 bp | TTAAAAGCTAGACTGATACAGTCTGTAAGATTCCTTTCAGAGCACTGTGTTTATACTTGTATTTCCGATTaGGCAGCTTCACAGTATCTA | + |
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Preference number: 4 (lower is better) Translates to: LKARLIQSVRFLSEHCVYTCISD*AASQYL Trigger: TAGATACTGTGAAGCTGCTCAATCGGAAATACAAGT...ATAAACACAGTGCTCTGAAAGGAATCTTACAGACTGTATCAGTCTAGCTTTTAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034868.14 |
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| CDS-3UTR GCA 90 bp | TTAAAAGCTAGACTGATACAGTCTGTAAGATTCCTTTCAGAGCACTGTGTTTATTTTTGTGACTGCTGCTaGTTCTCCATGTTCCATAAT | + |
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Preference number: 4 (lower is better) Translates to: LKARLIQSVRFLSEHCVYFCDCC*FSMFHN Trigger: ATTATGGAACATGGAGAAGCAGCAGCAGTCACAAAA...ATAAACACAGTGCTCTGAAAGGAATCTTACAGACTGTATCAGTCTAGCTTTTAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000034868.14 ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| CDS-3UTR GCA 90 bp | CAGTCTGTAAGATTCCTTTCAGAGCACTGTGTTTATAAATCACGTATGCTTTTTTTTTGTGACTGCTGCTaGTTCTCCATGTTCCATAAT | + |
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Preference number: 4 (lower is better) Translates to: QSVRFLSEHCVYKSRMLFFCDCC*FSMFHN Trigger: ATTATGGAACATGGAGAAGCAGCAGCAGTCACAAAA...AAAAAGCATACGTGATTTATAAACACAGTGCTCTGAAAGGAATCTTACAGACTG 37% GC, longest homopolymer 9 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| CDS-3UTR GCA 90 bp | TTAAAAGCTAGACTGATACAGTCTGTAAGATTCCTTTCAGAGCACTGTGTTTATGTTTACTTTTGTAACTaGTTCTTCCACTCCTACCAG | + |
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Preference number: 4 (lower is better) Translates to: LKARLIQSVRFLSEHCVYVYFCN*FFHSYQ Trigger: CTGGTAGGAGTGGAAGAAGCAGTTACAAAAGTAAAC...ATAAACACAGTGCTCTGAAAGGAATCTTACAGACTGTATCAGTCTAGCTTTTAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000034868.14 ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| CDS-3UTR GCA 90 bp | TTAAAAGCTAGACTGATACAGTCTGTAAGATTCCTTTCAGAGCACTGTGTTTATGAAGTTCAAACACAATaGAAATGTGACCTCGATGCT | + |
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Preference number: 4 (lower is better) Translates to: LKARLIQSVRFLSEHCVYEVQTQ*KCDLDA Trigger: AGCATCGAGGTCACATTTGCATTGTGTTTGAACTTC...ATAAACACAGTGCTCTGAAAGGAATCTTACAGACTGTATCAGTCTAGCTTTTAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034868.14 |
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| CDS-3UTR GCA 90 bp | TTAAAAGCTAGACTGATACAGTCTGTAAGATTCCTTTCAGAGCACTGTGTTTATGTTTTCTGTATCATGTaGTTTGGTAGTGGTCCAAGA | + |
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Preference number: 4 (lower is better) Translates to: LKARLIQSVRFLSEHCVYVFCIM*FGSGPR Trigger: TCTTGGACCACTACCAAAGCACATGATACAGAAAAC...ATAAACACAGTGCTCTGAAAGGAATCTTACAGACTGTATCAGTCTAGCTTTTAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034868.14 |
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| CDS-3UTR TCA 90 bp | TTAAAAGCTAGACTGATACAGTCTGTAAGATTCCTTTCAGAGCACTGTGTTTATGGCTTCAAGTCTGTATaGGTCAATTTATTACTATGC | + |
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Preference number: 4 (lower is better) Translates to: LKARLIQSVRFLSEHCVYGFKSV*VNLLLC Trigger: GCATAGTAATAAATTGACTCATACAGACTTGAAGCC...ATAAACACAGTGCTCTGAAAGGAATCTTACAGACTGTATCAGTCTAGCTTTTAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034868.14 |
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| CDS-3UTR TCA 90 bp | TTAAAAGCTAGACTGATACAGTCTGTAAGATTCCTTTCAGAGCACTGTGTTTATCAATCTAATCGATCATaGTGGAAATATCTGCGTTTC | + |
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Preference number: 4 (lower is better) Translates to: LKARLIQSVRFLSEHCVYQSNRS*WKYLRF Trigger: GAAACGCAGATATTTCCATCATGATCGATTAGATTG...ATAAACACAGTGCTCTGAAAGGAATCTTACAGACTGTATCAGTCTAGCTTTTAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034868.14 |
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| CDS-3UTR GCA 90 bp | TTAAAAGCTAGACTGATACAGTCTGTAAGATTCCTTTCAGAGCACTGTGTTTATTTTAACTATTTTTACTaGTACACGTCTACCTCCCAC | + |
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Preference number: 4 (lower is better) Translates to: LKARLIQSVRFLSEHCVYFNYFY*YTSTSH Trigger: GTGGGAGGTAGACGTGTAGCAGTAAAAATAGTTAAA...ATAAACACAGTGCTCTGAAAGGAATCTTACAGACTGTATCAGTCTAGCTTTTAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000034868.14 |
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| CDS-3UTR GCA 90 bp | TTAAAAGCTAGACTGATACAGTCTGTAAGATTCCTTTCAGAGCACTGTGTTTATCATGATGGAAATATCTaGGTTTCCTGGTTTTCTGTA | + |
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Preference number: 4 (lower is better) Translates to: LKARLIQSVRFLSEHCVYHDGNI*VSWFSV Trigger: TACAGAAAACCAGGAAACGCAGATATTTCCATCATG...ATAAACACAGTGCTCTGAAAGGAATCTTACAGACTGTATCAGTCTAGCTTTTAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034868.14 |
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| CDS-3UTR CCA 90 bp | TTAAAAGCTAGACTGATACAGTCTGTAAGATTCCTTTCAGAGCACTGTGTTTATCATCACGTTTCATTTTaGGATTATAAGCCTCTGTGT | + |
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Preference number: 4 (lower is better) Translates to: LKARLIQSVRFLSEHCVYHHVSF*DYKPLC Trigger: ACACAGAGGCTTATAATCCCAAAATGAAACGTGATG...ATAAACACAGTGCTCTGAAAGGAATCTTACAGACTGTATCAGTCTAGCTTTTAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034868.14 |
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| CDS-3UTR CCA 90 bp | TTAAAAGCTAGACTGATACAGTCTGTAAGATTCCTTTCAGAGCACTGTGTTTATAATATCTGCGTTTCCTaGTTTTCTGTATCATGTGCT | + |
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Preference number: 4 (lower is better) Translates to: LKARLIQSVRFLSEHCVYNICVS*FSVSCA Trigger: AGCACATGATACAGAAAACCAGGAAACGCAGATATT...ATAAACACAGTGCTCTGAAAGGAATCTTACAGACTGTATCAGTCTAGCTTTTAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034868.14 |
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| 3UTR CAA 72 bp | TGTTGTATTCAAGTGTTCCAAAACTTGTATTTCCGATaGAGCAGCTTCACAGTATCTATCCACATTTTTAAC | + |
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Preference number: 4 (lower is better) Translates to: CCIQVFQNLYFR*SSFTVSIHIFN Trigger: GTTAAAAATGTGGATAGATACTGTGAAGCTGCTCAATCGGAAATACAAGTTTTGGAACACTTGAATACAACA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| CDS GCA 90 bp | TTCTTCCACTCCTACCAGAGGACTTGCTACTATGCATCTGGTATCTaGTTCCAGGTTCTCCATAGGGATGCCCTGGCTCGTAGCCCATGT | + |
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Preference number: 5 (lower is better) Translates to: FFHSYQRTCYYASGI*FQVLHRDALARSPC Trigger: ACATGGGCTACGAGCCAGGGCATCCCTATGGAGAACCTGGAAGCAGATACCAGATGCATAGTAGCAAGTCCTCTGGTAGGAGTGGAAGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034868.14 ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| CDS GCA 90 bp | CACGGGCGCTGCTATGTGATCTCTTCTTTCTTTTGTGACTGCTGCTaGTTCTCCATGTTCCATAATCCCAGTCTCTTTCATCCCAGTCAG | + |
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Preference number: 5 (lower is better) Translates to: HGRCYVISSFFCDCC*FSMFHNPSLFHPSQ Trigger: CTGACTGGGATGAAAGAGACTGGGATTATGGAACATGGAGAAGCAGCAGCAGTCACAAAAGAAAGAAGAGATCACATAGCAGCGCCCGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000034868.14 ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| CDS GCA 90 bp | TGCTTTCCAGATAATAGCTGTCTGTCGTTTTGGAGTGATCGTACCTaGAGCGCTTTTGCTCACGGGCGCTGCTATGTGATCTCTTCTTTC | + |
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Preference number: 5 (lower is better) Translates to: CFPDNSCLSFWSDRT*SAFAHGRCYVISSF Trigger: GAAAGAAGAGATCACATAGCAGCGCCCGTGAGCAAAAGCGCTGCAGGTACGATCACTCCAAAACGACAGACAGCTATTATCTGGAAAGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000034868.14 ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| CDS CCA 90 bp | ACTATGCATCTGGTATCTGCTTCCAGGTTCTCCATAGGGATGCCCTaGCTCGTAGCCCATGTAGTCATTCCTGTATTCATCAACATAGCG | + |
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Preference number: 5 (lower is better) Translates to: TMHLVSASRFSIGMP*LVAHVVIPVFINIA Trigger: CGCTATGTTGATGAATACAGGAATGACTACATGGGCTACGAGCCAGGGCATCCCTATGGAGAACCTGGAAGCAGATACCAGATGCATAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034868.14 ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| CDS CCA 90 bp | TCTCATTTATGGATCTGCTTTCCAGATAATAGCTGTCTGTCGTTTTaGAGTGATCGTACCTGCAGCGCTTTTGCTCACGGGCGCTGCTAT | + |
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Preference number: 5 (lower is better) Translates to: SHLWICFPDNSCLSF*SDRTCSAFAHGRCY Trigger: ATAGCAGCGCCCGTGAGCAAAAGCGCTGCAGGTACGATCACTCCAAAACGACAGACAGCTATTATCTGGAAAGCAGATCCATAAATGAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000034868.14 ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| CDS GCA 90 bp | CATCAACATAGCGTCGACTATGATAAGCTTTCTCATTTATGGATCTaGTTTCCAGATAATAGCTGTCTGTCGTTTTGGAGTGATCGTACC | + |
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Preference number: 5 (lower is better) Translates to: HQHSVDYDKLSHLWI*FPDNSCLSFWSDRT Trigger: GGTACGATCACTCCAAAACGACAGACAGCTATTATCTGGAAAGCAGATCCATAAATGAGAAAGCTTATCATAGTCGACGCTATGTTGATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000034868.14 ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| CDS-3UTR CAA 90 bp | TTAAAAGCTAGACTGATACAGTCTGTAAGATTCCTTTCAGAGCACTGTGTTTATTCTGTATCATGTGCTTaGGTAGTGGTCCAAGAATCC | + |
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Preference number: 5 (lower is better) Translates to: LKARLIQSVRFLSEHCVYSVSCA*VVVQES Trigger: GGATTCTTGGACCACTACCAAAGCACATGATACAGA...ATAAACACAGTGCTCTGAAAGGAATCTTACAGACTGTATCAGTCTAGCTTTTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034868.14 |
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| CDS-3UTR CAA 90 bp | TTAAAAGCTAGACTGATACAGTCTGTAAGATTCCTTTCAGAGCACTGTGTTTATCAAGTGTTCCAAAACTaGTATTTCCGATTGAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: LKARLIQSVRFLSEHCVYQVFQN*YFRLSS Trigger: GCTGCTCAATCGGAAATACAAGTTTTGGAACACTTG...ATAAACACAGTGCTCTGAAAGGAATCTTACAGACTGTATCAGTCTAGCTTTTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034868.14 |
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| CDS-3UTR CAA 90 bp | TTAAAAGCTAGACTGATACAGTCTGTAAGATTCCTTTCAGAGCACTGTGTTTATTTGAGAGTAATTCTTTaGGCGGGATCATACTCCAAC | + |
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Preference number: 5 (lower is better) Translates to: LKARLIQSVRFLSEHCVYLRVIL*AGSYSN Trigger: GTTGGAGTATGATCCCGCCAAAAGAATTACTCTCAA...ATAAACACAGTGCTCTGAAAGGAATCTTACAGACTGTATCAGTCTAGCTTTTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034868.14 |
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| CDS-3UTR CAA 90 bp | TTAAAAGCTAGACTGATACAGTCTGTAAGATTCCTTTCAGAGCACTGTGTTTATCAACAATTTCATATCTaGCACTTAGTACGTCTCCAC | + |
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Preference number: 5 (lower is better) Translates to: LKARLIQSVRFLSEHCVYQQFHI*HLVRLH Trigger: GTGGAGACGTACTAAGTGCAAGATATGAAATTGTTG...ATAAACACAGTGCTCTGAAAGGAATCTTACAGACTGTATCAGTCTAGCTTTTAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034868.14 |
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| CDS-3UTR CAA 90 bp | TTAAAAGCTAGACTGATACAGTCTGTAAGATTCCTTTCAGAGCACTGTGTTTATAACTTGTATTTCCGATaGAGCAGCTTCACAGTATCT | + |
|
Preference number: 5 (lower is better) Translates to: LKARLIQSVRFLSEHCVYNLYFR*SSFTVS Trigger: AGATACTGTGAAGCTGCTCAATCGGAAATACAAGTT...ATAAACACAGTGCTCTGAAAGGAATCTTACAGACTGTATCAGTCTAGCTTTTAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034868.14 |
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| CDS GCA 72 bp | TCCTACCAGAGGACTTGCTACTATGCATCTGGTATCTaGTTCCAGGTTCTCCATAGGGATGCCCTGGCTCGT | + |
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Preference number: 6 (lower is better) Translates to: SYQRTCYYASGI*FQVLHRDALAR Trigger: ACGAGCCAGGGCATCCCTATGGAGAACCTGGAAGCAGATACCAGATGCATAGTAGCAAGTCCTCTGGTAGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034868.14 ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| CDS GCA 72 bp | GATAATAGCTGTCTGTCGTTTTGGAGTGATCGTACCTaGAGCGCTTTTGCTCACGGGCGCTGCTATGTGATC | + |
|
Preference number: 6 (lower is better) Translates to: DNSCLSFWSDRT*SAFAHGRCYVI Trigger: GATCACATAGCAGCGCCCGTGAGCAAAAGCGCTGCAGGTACGATCACTCCAAAACGACAGACAGCTATTATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000034868.14 ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| CDS CCA 72 bp | CTGGTATCTGCTTCCAGGTTCTCCATAGGGATGCCCTaGCTCGTAGCCCATGTAGTCATTCCTGTATTCATC | + |
|
Preference number: 6 (lower is better) Translates to: LVSASRFSIGMP*LVAHVVIPVFI Trigger: GATGAATACAGGAATGACTACATGGGCTACGAGCCAGGGCATCCCTATGGAGAACCTGGAAGCAGATACCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034868.14 ENSMUST00000148330.8 ENSMUST00000151338.8 |
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| CDS GCA 72 bp | TTACTGCTACACGTCTACCTCCCACTTTATGATCGATaGATTCCACCACTTTTCCGAAAGCACCTTCACCTA | + |
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Preference number: 6 (lower is better) Translates to: LLLHVYLPLYDR*IPPLFRKHLHL Trigger: TAGGTGAAGGTGCTTTCGGAAAAGTGGTGGAATGCATCGATCATAAAGTGGGAGGTAGACGTGTAGCAGTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034868.14 |
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