RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CLIC6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022949

Ensembl transcript IDs: ENSMUST00000023670.4, ENSMUST00000162181.8

Found 105 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GAAGCAAGATACCCTGGTCCCATTATCCTAGGTCCTGCTGTCCCTTaGTTCTGCAAGAGGCTCTCCAAGCCCCTGTGTGGCTCAGCAGGG +
Preference number: 1 (lower is better)
Translates to: EARYPGPIILGPAVP*FCKRLSKPLCGSAG
Trigger: CCCTGCTGAGCCACACAGGGGCTTGGAGAGCCTCTTGCAGAACCAAGGGACAGCAGGACCTAGGATAATGGGACCAGGGTATCTTGCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
3UTR TCA 90 bp GGTTTACACTGTGATATAAGGCAGGGAGAGTCTCCAAGCCAGAGCTaGCAGGAAGAGTCCCCAGGAAAGCACAGTCCCTCTGGGGGAGTG +
Preference number: 1 (lower is better)
Translates to: GLHCDIRQGESPSQS*QEESPGKHSPSGGV
Trigger: CACTCCCCCAGAGGGACTGTGCTTTCCTGGGGACTCTTCCTGTCAGCTCTGGCTTGGAGACTCTCCCTGCCTTATATCACAGTGTAAACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
3UTR CCA 90 bp AAAAGGAGTAGACCCAAAGGCACGGGGAACCCTCTCCTCCACACCTaGGCTCAGAGCAACAACATCCTTAAAGCAGAAGCAAGATACCCT +
Preference number: 1 (lower is better)
Translates to: KRSRPKGTGNPLLHT*AQSNNILKAEARYP
Trigger: AGGGTATCTTGCTTCTGCTTTAAGGATGTTGTTGCTCTGAGCCCAGGTGTGGAGGAGAGGGTTCCCCGTGCCTTTGGGTCTACTCCTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
3UTR-3UTR CCA 90 bp AGGGAGAGTCTCCAAGCCAGAGCTGACAGGAAGAGTCCCCAGGAAAGCACAGTCAGGCCCCGCATCCTATaGTGGCATTTAGAGAGTCAG +
Preference number: 2 (lower is better)
Translates to: RESLQARADRKSPQESTVRPRIL*WHLESQ
Trigger: CTGACTCTCTAAATGCCACCATAGGATGCGGGGCCT...GACTGTGCTTTCCTGGGGACTCTTCCTGTCAGCTCTGGCTTGGAGACTCTCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
3UTR-3UTR CCA 90 bp AGGAAAGCACAGTCCCTCTGGGGGAGTGAGAACAATGGGTTCCAGAAAAGGAGTGGTCCTGCTGTCCCTTaGTTCTGCAAGAGGCTCTCC +
Preference number: 2 (lower is better)
Translates to: RKAQSLWGSENNGFQKRSGPAVP*FCKRLS
Trigger: GGAGAGCCTCTTGCAGAACCAAGGGACAGCAGGACC...ACTCCTTTTCTGGAACCCATTGTTCTCACTCCCCCAGAGGGACTGTGCTTTCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
3UTR-3UTR GCA 90 bp GACTATTGGACTGAAGCCACAGCTTCCAAGAAACAAGAAAATGTAGTGGCCACCGCTGTCCCTTGGTTCTaGAAGAGGCTCTCCAAGCCC +
Preference number: 2 (lower is better)
Translates to: DYWTEATASKKQENVVATAVPWF*KRLSKP
Trigger: GGGCTTGGAGAGCCTCTTGCAGAACCAAGGGACAGC...GGTGGCCACTACATTTTCTTGTTTCTTGGAAGCTGTGGCTTCAGTCCAATAGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
3UTR-3UTR TCA 90 bp GGTGGCCCCAAGAATGATGGAGGGAATGCCACAAGCACACCAGAAACTCCTCAATGTAGGTTTACACTGTaGTATAAGGCAGGGAGAGTC +
Preference number: 2 (lower is better)
Translates to: GGPKNDGGNATSTPETPQCRFTL*YKAGRV
Trigger: GACTCTCCCTGCCTTATATCACAGTGTAAACCTACA...TTGAGGAGTTTCTGGTGTGCTTGTGGCATTCCCTCCATCATTCTTGGGGCCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
3UTR-3UTR CCA 90 bp TTAAAATGCCAAGAACTTAAGTCAAAGCCTGTTTGCCCTGAAACAAGCTACAAAAACAGAGGGCTCTCCTaGAAGGCCCGCCCACTCATC +
Preference number: 2 (lower is better)
Translates to: LKCQELKSKPVCPETSYKNRGLS*KARPLI
Trigger: GATGAGTGGGCGGGCCTTCCAGGAGAGCCCTCTGTT...TTTGTAGCTTGTTTCAGGGCAAACAGGCTTTGACTTAAGTTCTTGGCATTTTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
3UTR-3UTR CCA 90 bp AAACTCCCAACCATCAACTCATTTACCAAGTTTGAATGTCACAAGAGCTTAACACCTCTCCTCCACACCTaGGCTCAGAGCAACAACATC +
Preference number: 2 (lower is better)
Translates to: KLPTINSFTKFECHKSLTPLLHT*AQSNNI
Trigger: GATGTTGTTGCTCTGAGCCCAGGTGTGGAGGAGAGG...TGTTAAGCTCTTGTGACATTCAAACTTGGTAAATGAGTTGATGGTTGGGAGTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
3UTR-3UTR GCA 90 bp GACTATTGGACTGAAGCCACAGCTTCCAAGAAACAAGAAAATGTAGTGGCCACCAGGAGATCCCTTCATTaGTTTCTTACACAAATGCCA +
Preference number: 2 (lower is better)
Translates to: DYWTEATASKKQENVVATRRSLH*FLTQMP
Trigger: TGGCATTTGTGTAAGAAAGCAATGAAGGGATCTCCT...GGTGGCCACTACATTTTCTTGTTTCTTGGAAGCTGTGGCTTCAGTCCAATAGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
3UTR-3UTR TCA 90 bp ACCAGAAACTCCTCAACTTCTCAGGAAAGGACCATTTTCCAGAAAAGCTTAAGAGCATACATGAAAGATTaGCCGATTCTGGAAACATTC +
Preference number: 2 (lower is better)
Translates to: TRNSSTSQERTIFQKSLRAYMKD*PILETF
Trigger: GAATGTTTCCAGAATCGGTCAATCTTTCATGTATGC...TCTTAAGCTTTTCTGGAAAATGGTCCTTTCCTGAGAAGTTGAGGAGTTTCTGGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
3UTR-3UTR CCA 90 bp ACAAGAAAATGTAGTGGCCACCATATTGGACTTTGTTTCCTTTCGAGATATTTTACATTTCCTCATTCATaGTTAGGCTGGAACAGGCCT +
Preference number: 2 (lower is better)
Translates to: TRKCSGHHIGLCFLSRYFTFPHS*LGWNRP
Trigger: AGGCCTGTTCCAGCCTAACCATGAATGAGGAAATGT...AAAATATCTCGAAAGGAAACAAAGTCCAATATGGTGGCCACTACATTTTCTTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
3UTR CAA 90 bp ATATGTGATGTATGTGCACGCATGAGCACAGGCATACATGAAAGATaGACCGATTCTGGAAACATTCATCAAATTGTCATCAGAAAATAT +
Preference number: 2 (lower is better)
Translates to: ICDVCARMSTGIHER*TDSGNIHQIVIRKY
Trigger: ATATTTTCTGATGACAATTTGATGAATGTTTCCAGAATCGGTCAATCTTTCATGTATGCCTGTGCTCATGCGTGCACATACATCACATAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
3UTR-3UTR CCA 90 bp AAACTCCCAACCATCAACTCATTTACCAAGTTTGAATGTCACAAGAGCTTAACATTCTGGATTTTCATCTaGAATTCAGTTTTCCTGCTT +
Preference number: 2 (lower is better)
Translates to: KLPTINSFTKFECHKSLTFWIFI*NSVFLL
Trigger: AAGCAGGAAAACTGAATTCCAGATGAAAATCCAGAA...TGTTAAGCTCTTGTGACATTCAAACTTGGTAAATGAGTTGATGGTTGGGAGTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
3UTR GCA 72 bp GGTCCCATTATCCTAGGTCCTGCTGTCCCTTGGTTCTaGAAGAGGCTCTCCAAGCCCCTGTGTGGCTCAGCA +
Preference number: 3 (lower is better)
Translates to: GPIILGPAVPWF*KRLSKPLCGSA
Trigger: TGCTGAGCCACACAGGGGCTTGGAGAGCCTCTTGCAGAACCAAGGGACAGCAGGACCTAGGATAATGGGACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
3UTR CCA 72 bp TACCCTGGTCCCATTATCCTAGGTCCTGCTGTCCCTTaGTTCTGCAAGAGGCTCTCCAAGCCCCTGTGTGGC +
Preference number: 3 (lower is better)
Translates to: YPGPIILGPAVP*FCKRLSKPLCG
Trigger: GCCACACAGGGGCTTGGAGAGCCTCTTGCAGAACCAAGGGACAGCAGGACCTAGGATAATGGGACCAGGGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
3UTR CCA 72 bp AAAGAGCTGTTTCAGGGAAGAAACAGAGGGCTCTCCTaGAAGGCCCGCCCACTCATCTGCTGCAAGCCAGTG +
Preference number: 3 (lower is better)
Translates to: KELFQGRNRGLS*KARPLICCKPV
Trigger: CACTGGCTTGCAGCAGATGAGTGGGCGGGCCTTCCAGGAGAGCCCTCTGTTTCTTCCCTGAAACAGCTCTTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
3UTR CCA 72 bp AGACCCAAAGGCACGGGGAACCCTCTCCTCCACACCTaGGCTCAGAGCAACAACATCCTTAAAGCAGAAGCA +
Preference number: 3 (lower is better)
Translates to: RPKGTGNPLLHT*AQSNNILKAEA
Trigger: TGCTTCTGCTTTAAGGATGTTGTTGCTCTGAGCCCAGGTGTGGAGGAGAGGGTTCCCCGTGCCTTTGGGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
3UTR TCA 72 bp TGTGATATAAGGCAGGGAGAGTCTCCAAGCCAGAGCTaGCAGGAAGAGTCCCCAGGAAAGCACAGTCCCTCT +
Preference number: 3 (lower is better)
Translates to: CDIRQGESPSQS*QEESPGKHSPS
Trigger: AGAGGGACTGTGCTTTCCTGGGGACTCTTCCTGTCAGCTCTGGCTTGGAGACTCTCCCTGCCTTATATCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
3UTR TCA 72 bp AACAGGCCTCACTATGACCAAGGGTGGCCCCAAGAATaGTGGAGGGAATGCCACAAGCACACCAGAAACTCC +
Preference number: 3 (lower is better)
Translates to: NRPHYDQGWPQE*WRECHKHTRNS
Trigger: GGAGTTTCTGGTGTGCTTGTGGCATTCCCTCCATCATTCTTGGGGCCACCCTTGGTCATAGTGAGGCCTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
3UTR GCA 72 bp AGAAGCAAGATACCCTGGTCCCATTATCCTAGGTCCTaGTGTCCCTTGGTTCTGCAAGAGGCTCTCCAAGCC +
Preference number: 3 (lower is better)
Translates to: RSKIPWSHYPRS*CPLVLQEALQA
Trigger: GGCTTGGAGAGCCTCTTGCAGAACCAAGGGACAGCAGGACCTAGGATAATGGGACCAGGGTATCTTGCTTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
3UTR TCA 72 bp TCCTCATTCATGGTTAGGCTGGAACAGGCCTCACTATaGCCAAGGGTGGCCCCAAGAATGATGGAGGGAATG +
Preference number: 3 (lower is better)
Translates to: SSFMVRLEQASL*PRVAPRMMEGM
Trigger: CATTCCCTCCATCATTCTTGGGGCCACCCTTGGTCATAGTGAGGCCTGTTCCAGCCTAACCATGAATGAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
3UTR CCA 72 bp GCTTGCAAGCTCACATTTCCTCATTCATGGTTAGGCTaGAACAGGCCTCACTATGACCAAGGGTGGCCCCAA +
Preference number: 3 (lower is better)
Translates to: ACKLTFPHSWLG*NRPHYDQGWPQ
Trigger: TTGGGGCCACCCTTGGTCATAGTGAGGCCTGTTCCAGCCTAACCATGAATGAGGAAATGTGAGCTTGCAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
3UTR CCA 72 bp CCCTTGGTTCTGCAAGAGGCTCTCCAAGCCCCTGTGTaGCTCAGCAGGGCTAAATCCTTTGTTTTAAGTCTT +
Preference number: 3 (lower is better)
Translates to: PLVLQEALQAPV*LSRAKSFVLSL
Trigger: AAGACTTAAAACAAAGGATTTAGCCCTGCTGAGCCACACAGGGGCTTGGAGAGCCTCTTGCAGAACCAAGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
3UTR CCA 72 bp CCTTGCAGAGCTTGCAAGCTCACATTTCCTCATTCATaGTTAGGCTGGAACAGGCCTCACTATGACCAAGGG +
Preference number: 3 (lower is better)
Translates to: PCRACKLTFPHS*LGWNRPHYDQG
Trigger: CCCTTGGTCATAGTGAGGCCTGTTCCAGCCTAACCATGAATGAGGAAATGTGAGCTTGCAAGCTCTGCAAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
3UTR TCA 72 bp AGCACTGACATGAGCAGGACTTGTAGGTTTACACTGTaGTATAAGGCAGGGAGAGTCTCCAAGCCAGAGCTG +
Preference number: 3 (lower is better)
Translates to: STDMSRTCRFTL*YKAGRVSKPEL
Trigger: CAGCTCTGGCTTGGAGACTCTCCCTGCCTTATATCACAGTGTAAACCTACAAGTCCTGCTCATGTCAGTGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
3UTR TCA 72 bp TTTACCAAGTTTGAATGTCACAAGAGCTTAACAAGGTaGCTCCTACAGAGGTGCAGAGTGATGTGGAGCAGG +
Preference number: 3 (lower is better)
Translates to: FTKFECHKSLTR*LLQRCRVMWSR
Trigger: CCTGCTCCACATCACTCTGCACCTCTGTAGGAGTCACCTTGTTAAGCTCTTGTGACATTCAAACTTGGTAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS-3UTR GCA 90 bp AGGGAGAGTCTCCAAGCCAGAGCTGACAGGAAGAGTCCCCAGGAAAGCACAGTCCGCGGGTCCTGCGCCTaGGCTCCCCCAGTTCCCTCG +
Preference number: 4 (lower is better)
Translates to: RESLQARADRKSPQESTVRGSCA*APPVPS
Trigger: CGAGGGAACTGGGGGAGCGCAGGCGCAGGACCCGCG...GACTGTGCTTTCCTGGGGACTCTTCCTGTCAGCTCTGGCTTGGAGACTCTCCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS-3UTR CCA 90 bp GCACAGTCCCTCTGGGGGAGTGAGAACAATGGGTTCCAGAAAAGGAGTAGACCCCCTTCCCCGAGGCCCTaGCCTCTACGCCCGCCCCCA +
Preference number: 4 (lower is better)
Translates to: AQSLWGSENNGFQKRSRPPSPRP*PLRPPP
Trigger: TGGGGGCGGGCGTAGAGGCCAGGGCCTCGGGGAAGG...GGGTCTACTCCTTTTCTGGAACCCATTGTTCTCACTCCCCCAGAGGGACTGTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 23 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS-3UTR CCA 90 bp GCTGTTTCAGGGAAGAAACAGAGGGCTCTCCTGGAAGGCCCGCCCACTCATCTGGGGGCTTCTCTTGGATaGCCCCCTCGCAGGGTCCCT +
Preference number: 4 (lower is better)
Translates to: AVSGKKQRALLEGPPTHLGASLG*PPRRVP
Trigger: AGGGACCCTGCGAGGGGGCCATCCAAGAGAAGCCCC...CAGATGAGTGGGCGGGCCTTCCAGGAGAGCCCTCTGTTTCTTCCCTGAAACAGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS-3UTR CCA 90 bp AAAGGAGTAGACCCAAAGGCACGGGGAACCCTCTCCTCCACACCTGGGCTCAGACAGGTCCGCAGCTCCTaGCTCTCCTGGTCCCTCGAT +
Preference number: 4 (lower is better)
Translates to: KGVDPKARGTLSSTPGLRQVRSS*LSWSLD
Trigger: ATCGAGGGACCAGGAGAGCCAGGAGCTGCGGACCTG...TCTGAGCCCAGGTGTGGAGGAGAGGGTTCCCCGTGCCTTTGGGTCTACTCCTTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS-3UTR GCA 90 bp GCTGTTTCAGGGAAGAAACAGAGGGCTCTCCTGGAAGGCCCGCCCACTCATCTGATCCCCCTCCTCCAATaGTGGGCCATTCTCCCTGCG +
Preference number: 4 (lower is better)
Translates to: AVSGKKQRALLEGPPTHLIPLLQ*WAILPA
Trigger: CGCAGGGAGAATGGCCCAGCATTGGAGGAGGGGGAT...CAGATGAGTGGGCGGGCCTTCCAGGAGAGCCCTCTGTTTCTTCCCTGAAACAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS-3UTR GCA 90 bp GGTGGCCCCAAGAATGATGGAGGGAATGCCACAAGCACACCAGAAACTCCTCAAGTCGCACCTTCGGGTTaGCCCTGGGAACCTGGAGCG +
Preference number: 4 (lower is better)
Translates to: GGPKNDGGNATSTPETPQVAPSG*PWEPGA
Trigger: CGCTCCAGGTTCCCAGGGGCAACCCGAAGGTGCGAC...TTGAGGAGTTTCTGGTGTGCTTGTGGCATTCCCTCCATCATTCTTGGGGCCACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS-3UTR GCA 90 bp GCACAGTCCCTCTGGGGGAGTGAGAACAATGGGTTCCAGAAAAGGAGTAGACCCGTCCCTAGGTGCCTCTaGAGCTTCCTCGCTCGCTTC +
Preference number: 4 (lower is better)
Translates to: AQSLWGSENNGFQKRSRPVPRCL*SFLARF
Trigger: GAAGCGAGCGAGGAAGCTGCAGAGGCACCTAGGGAC...GGGTCTACTCCTTTTCTGGAACCCATTGTTCTCACTCCCCCAGAGGGACTGTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS-3UTR GCA 90 bp GGTGGCCCCAAGAATGATGGAGGGAATGCCACAAGCACACCAGAAACTCCTCAACCAGTTCCCTCGTCCTaGCCACAGCCTCCTTCCTCC +
Preference number: 4 (lower is better)
Translates to: GGPKNDGGNATSTPETPQPVPSS*PQPPSS
Trigger: GGAGGAAGGAGGCTGTGGGCAGGACGAGGGAACTGG...TTGAGGAGTTTCTGGTGTGCTTGTGGCATTCCCTCCATCATTCTTGGGGCCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS-3UTR GCA 90 bp AAAGGAGTAGACCCAAAGGCACGGGGAACCCTCTCCTCCACACCTGGGCTCAGATCTCCTCCTGGAGCTTaGCCTGGTCCCCATTCTCAT +
Preference number: 4 (lower is better)
Translates to: KGVDPKARGTLSSTPGLRSPPGA*PGPHSH
Trigger: ATGAGAATGGGGACCAGGGCAAGCTCCAGGAGGAGA...TCTGAGCCCAGGTGTGGAGGAGAGGGTTCCCCGTGCCTTTGGGTCTACTCCTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS-3UTR GCA 90 bp TACCCTGGTCCCATTATCCTAGGTCCTGCTGTCCCTTGGTTCTGCAAGAGGCTCAAGAGGGTGATGTCGTaGTCCTGTCCCGGATCCCCC +
Preference number: 4 (lower is better)
Translates to: YPGPIILGPAVPWFCKRLKRVMS*SCPGSP
Trigger: GGGGGATCCGGGACAGGAGCACGACATCACCCTCTT...GAGCCTCTTGCAGAACCAAGGGACAGCAGGACCTAGGATAATGGGACCAGGGTA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS-3UTR CCA 90 bp AGGAAAGCACAGTCCCTCTGGGGGAGTGAGAACAATGGGTTCCAGAAAAGGAGTTCCCCGGTCTCCTCCTaGAGCTTGCCCTGGTCCCCA +
Preference number: 4 (lower is better)
Translates to: RKAQSLWGSENNGFQKRSSPVSS*SLPWSP
Trigger: TGGGGACCAGGGCAAGCTCCAGGAGGAGACCGGGGA...ACTCCTTTTCTGGAACCCATTGTTCTCACTCCCCCAGAGGGACTGTGCTTTCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS-3UTR CCA 90 bp AAAGGAGTAGACCCAAAGGCACGGGGAACCCTCTCCTCCACACCTGGGCTCAGACCTCCTCGTGTTCGGTaGATTTGGCCTCCTCTCCAT +
Preference number: 4 (lower is better)
Translates to: KGVDPKARGTLSSTPGLRPPRVR*IWPPLH
Trigger: ATGGAGAGGAGGCCAAATCCACCGAACACGAGGAGG...TCTGAGCCCAGGTGTGGAGGAGAGGGTTCCCCGTGCCTTTGGGTCTACTCCTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS-3UTR TCA 90 bp GGTGGCCCCAAGAATGATGGAGGGAATGCCACAAGCACACCAGAAACTCCTCAACCTGGACTTCTGGGTTaGTCTGCAACCCTAGCGCGC +
Preference number: 4 (lower is better)
Translates to: GGPKNDGGNATSTPETPQPGLLG*SATLAR
Trigger: GCGCGCTAGGGTTGCAGATCAACCCAGAAGTCCAGG...TTGAGGAGTTTCTGGTGTGCTTGTGGCATTCCCTCCATCATTCTTGGGGCCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
3UTR CAA 72 bp ATACCCTGGTCCCATTATCCTAGGTCCTGCTGTCCCTaGGTTCTGCAAGAGGCTCTCCAAGCCCCTGTGTGG +
Preference number: 4 (lower is better)
Translates to: IPWSHYPRSCCP*VLQEALQAPVW
Trigger: CCACACAGGGGCTTGGAGAGCCTCTTGCAGAACCAAGGGACAGCAGGACCTAGGATAATGGGACCAGGGTAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS-3UTR TCA 90 bp AAAGGAGTAGACCCAAAGGCACGGGGAACCCTCTCCTCCACACCTGGGCTCAGACACCATCAAAAGTCATaGAAGGAGGGTTCGTCCCAG +
Preference number: 4 (lower is better)
Translates to: KGVDPKARGTLSSTPGLRHHQKS*KEGSSQ
Trigger: CTGGGACGAACCCTCCTTTCATGACTTTTGATGGTG...TCTGAGCCCAGGTGTGGAGGAGAGGGTTCCCCGTGCCTTTGGGTCTACTCCTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS-3UTR CCA 90 bp GGTGGCCCCAAGAATGATGGAGGGAATGCCACAAGCACACCAGAAACTCCTCAAGGCTCCTCAGCTAAGTaGTTGCTGAGCTCTGCCTGG +
Preference number: 4 (lower is better)
Translates to: GGPKNDGGNATSTPETPQGSSAK*LLSSAW
Trigger: CCAGGCAGAGCTCAGCAACCACTTAGCTGAGGAGCC...TTGAGGAGTTTCTGGTGTGCTTGTGGCATTCCCTCCATCATTCTTGGGGCCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS-3UTR CCA 90 bp AGAACAATGGGTTCCAGAAAAGGAGTAGACCCAAAGGCACGGGGAACCCTCTCCTTGCTGAGCTCTGCCTaGGATTCCTCCTCGTGTTCG +
Preference number: 4 (lower is better)
Translates to: RTMGSRKGVDPKARGTLSLLSSA*DSSSCS
Trigger: CGAACACGAGGAGGAATCCCAGGCAGAGCTCAGCAA...GGAGAGGGTTCCCCGTGCCTTTGGGTCTACTCCTTTTCTGGAACCCATTGTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS-3UTR TCA 90 bp GACTATTGGACTGAAGCCACAGCTTCCAAGAAACAAGAAAATGTAGTGGCCACCTCGGGGGCCTCACCCTaGGAGTCTAACCCAGAGCTC +
Preference number: 4 (lower is better)
Translates to: DYWTEATASKKQENVVATSGASP*ESNPEL
Trigger: GAGCTCTGGGTTAGACTCTCAGGGTGAGGCCCCCGA...GGTGGCCACTACATTTTCTTGTTTCTTGGAAGCTGTGGCTTCAGTCCAATAGTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS-3UTR TCA 90 bp AGAACAATGGGTTCCAGAAAAGGAGTAGACCCAAAGGCACGGGGAACCCTCTCCTGGTCCCCATTCTCATaGGCATCTACTCTCGCATCC +
Preference number: 4 (lower is better)
Translates to: RTMGSRKGVDPKARGTLSWSPFS*ASTLAS
Trigger: GGATGCGAGAGTAGATGCTCATGAGAATGGGGACCA...GGAGAGGGTTCCCCGTGCCTTTGGGTCTACTCCTTTTCTGGAACCCATTGTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS-3UTR TCA 90 bp GCTGTTTCAGGGAAGAAACAGAGGGCTCTCCTGGAAGGCCCGCCCACTCATCTGCATAAAGAGACGCTGTaGAAATGGGCAGTTTCCGAT +
Preference number: 4 (lower is better)
Translates to: AVSGKKQRALLEGPPTHLHKETL*KWAVSD
Trigger: ATCGGAAACTGCCCATTTTCACAGCGTCTCTTTATG...CAGATGAGTGGGCGGGCCTTCCAGGAGAGCCCTCTGTTTCTTCCCTGAAACAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS-3UTR TCA 90 bp AGGGAGAGTCTCCAAGCCAGAGCTGACAGGAAGAGTCCCCAGGAAAGCACAGTCTCCTTTGTGAAACAGTaGCATCCTCTGAACTGTCGG +
Preference number: 4 (lower is better)
Translates to: RESLQARADRKSPQESTVSFVKQ*HPLNCR
Trigger: CCGACAGTTCAGAGGATGTCACTGTTTCACAAAGGA...GACTGTGCTTTCCTGGGGACTCTTCCTGTCAGCTCTGGCTTGGAGACTCTCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS-3UTR CCA 90 bp AGGAAAGCACAGTCCCTCTGGGGGAGTGAGAACAATGGGTTCCAGAAAAGGAGTTCCCCTGCAAGTCCCTaGACTTCTGGGTTGATCTGC +
Preference number: 4 (lower is better)
Translates to: RKAQSLWGSENNGFQKRSSPASP*TSGLIC
Trigger: GCAGATCAACCCAGAAGTCCAGGGACTTGCAGGGGA...ACTCCTTTTCTGGAACCCATTGTTCTCACTCCCCCAGAGGGACTGTGCTTTCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS-3UTR TCA 90 bp TGGACTGAAGCCACAGCTTCCAAGAAACAAGAAAATGTAGTGGCCACCATATTGCAGCTAAGTGGTTGCTaGGCTCTGCCTGGGATTCCT +
Preference number: 4 (lower is better)
Translates to: WTEATASKKQENVVATILQLSGC*ALPGIP
Trigger: AGGAATCCCAGGCAGAGCTCAGCAACCACTTAGCTG...CAATATGGTGGCCACTACATTTTCTTGTTTCTTGGAAGCTGTGGCTTCAGTCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS-3UTR GCA 90 bp AAACTCCCAACCATCAACTCATTTACCAAGTTTGAATGTCACAAGAGCTTAACACCAGAGCTCATCCCCTaGACCTGCTGGGCGCTTGGC +
Preference number: 4 (lower is better)
Translates to: KLPTINSFTKFECHKSLTPELIP*TCWALG
Trigger: GCCAAGCGCCCAGCAGGTGCAGGGGATGAGCTCTGG...TGTTAAGCTCTTGTGACATTCAAACTTGGTAAATGAGTTGATGGTTGGGAGTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS-3UTR GCA 90 bp TGGACTGAAGCCACAGCTTCCAAGAAACAAGAAAATGTAGTGGCCACCATATTGGTCCATGTTGTCCCCTaGAAGTCCCTGGACTTCTGG +
Preference number: 4 (lower is better)
Translates to: WTEATASKKQENVVATILVHVVP*KSLDFW
Trigger: CCAGAAGTCCAGGGACTTGCAGGGGACAACATGGAC...CAATATGGTGGCCACTACATTTTCTTGTTTCTTGGAAGCTGTGGCTTCAGTCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS-3UTR GCA 90 bp TTAAAATGCCAAGAACTTAAGTCAAAGCCTGTTTGCCCTGAAACAAGCTACAAACCCAAGTGGCCCTCCTaGGGGTGCCTCTGTGTCCAT +
Preference number: 4 (lower is better)
Translates to: LKCQELKSKPVCPETSYKPKWPS*GCLCVH
Trigger: ATGGACACAGAGGCACCCGCAGGAGGGCCACTTGGG...TTTGTAGCTTGTTTCAGGGCAAACAGGCTTTGACTTAAGTTCTTGGCATTTTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS-3UTR GCA 90 bp ACCAGAAACTCCTCAACTTCTCAGGAAAGGACCATTTTCCAGAAAAGCTTAAGAGTGGTTGCTGAGCTCTaGCTGGGATTCCTCCTCGTG +
Preference number: 4 (lower is better)
Translates to: TRNSSTSQERTIFQKSLRVVAEL*LGFLLV
Trigger: CACGAGGAGGAATCCCAGGCAGAGCTCAGCAACCAC...TCTTAAGCTTTTCTGGAAAATGGTCCTTTCCTGAGAAGTTGAGGAGTTTCTGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS-3UTR CCA 90 bp ACCAGAAACTCCTCAACTTCTCAGGAAAGGACCATTTTCCAGAAAAGCTTAAGAAACTCTTCTCCACCCTaGACGCTGGGCTCCTCAGCT +
Preference number: 4 (lower is better)
Translates to: TRNSSTSQERTIFQKSLRNSSPP*TLGSSA
Trigger: AGCTGAGGAGCCCAGCGTCCAGGGTGGAGAAGAGTT...TCTTAAGCTTTTCTGGAAAATGGTCCTTTCCTGAGAAGTTGAGGAGTTTCTGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS-3UTR TCA 90 bp AAACTCCCAACCATCAACTCATTTACCAAGTTTGAATGTCACAAGAGCTTAACACCTCCCTGCGCTTCCTaGCCAGATTCTGCCTCTTCC +
Preference number: 4 (lower is better)
Translates to: KLPTINSFTKFECHKSLTPPCAS*PDSASS
Trigger: GGAAGAGGCAGAATCTGGTCAGGAAGCGCAGGGAGG...TGTTAAGCTCTTGTGACATTCAAACTTGGTAAATGAGTTGATGGTTGGGAGTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS-3UTR CCA 90 bp ACAAGAAAATGTAGTGGCCACCATATTGGACTTTGTTTCCTTTCGAGATATTTTCTCCACCCTGGACGCTaGGCTCCTCAGCTAAGTGGT +
Preference number: 4 (lower is better)
Translates to: TRKCSGHHIGLCFLSRYFLHPGR*APQLSG
Trigger: ACCACTTAGCTGAGGAGCCCAGCGTCCAGGGTGGAG...AAAATATCTCGAAAGGAAACAAAGTCCAATATGGTGGCCACTACATTTTCTTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
3UTR CAA 72 bp GTATGTGCACGCATGAGCACAGGCATACATGAAAGATaGACCGATTCTGGAAACATTCATCAAATTGTCATC +
Preference number: 4 (lower is better)
Translates to: VCARMSTGIHER*TDSGNIHQIVI
Trigger: GATGACAATTTGATGAATGTTTCCAGAATCGGTCAATCTTTCATGTATGCCTGTGCTCATGCGTGCACATAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS-3UTR TCA 90 bp TGGACTGAAGCCACAGCTTCCAAGAAACAAGAAAATGTAGTGGCCACCATATTGTATTCACATCTGTCTTaGCTTCACCATCAAAAGTCA +
Preference number: 4 (lower is better)
Translates to: WTEATASKKQENVVATILYSHLS*LHHQKS
Trigger: TGACTTTTGATGGTGAAGTCAAGACAGATGTGAATA...CAATATGGTGGCCACTACATTTTCTTGTTTCTTGGAAGCTGTGGCTTCAGTCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS-3UTR TCA 90 bp ACAAGAAAATGTAGTGGCCACCATATTGGACTTTGTTTCCTTTCGAGATATTTTAACAGTGACATCCTCTaGACTGTCGGCATCGATTTC +
Preference number: 4 (lower is better)
Translates to: TRKCSGHHIGLCFLSRYFNSDIL*TVGIDF
Trigger: GAAATCGATGCCGACAGTTCAGAGGATGTCACTGTT...AAAATATCTCGAAAGGAAACAAAGTCCAATATGGTGGCCACTACATTTTCTTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS-3UTR GCA 90 bp ACAAGAAAATGTAGTGGCCACCATATTGGACTTTGTTTCCTTTCGAGATATTTTCTTCATCCTTTTCGCTaGATCGGAATATGCGTGTTC +
Preference number: 4 (lower is better)
Translates to: TRKCSGHHIGLCFLSRYFLHPFR*IGICVF
Trigger: GAACACGCATATTCCGATGCAGCGAAAAGGATGAAG...AAAATATCTCGAAAGGAAACAAAGTCCAATATGGTGGCCACTACATTTTCTTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS-3UTR CCA 90 bp ACAAGAAAATGTAGTGGCCACCATATTGGACTTTGTTTCCTTTCGAGATATTTTACAATCTTAATGATATaGAGCTTGGGTAAGAGGTTA +
Preference number: 4 (lower is better)
Translates to: TRKCSGHHIGLCFLSRYFTILMI*SLGKRL
Trigger: TAACCTCTTACCCAAGCTCCATATCATTAAGATTGT...AAAATATCTCGAAAGGAAACAAAGTCCAATATGGTGGCCACTACATTTTCTTGT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS GCA 90 bp GCGCCCGGCGTCTCGGCCTCAGGGCCGGTGCGCGGGTCCTGCGCCTaGGCTCCCCCAGTTCCCTCGTCCTGCCCACAGCCTCCTTCCTCC +
Preference number: 5 (lower is better)
Translates to: APGVSASGPVRGSCA*APPVPSSCPQPPSS
Trigger: GGAGGAAGGAGGCTGTGGGCAGGACGAGGGAACTGGGGGAGCGCAGGCGCAGGACCCGCGCACCGGCCCTGAGGCCGAGACGCCGGGCGC
77% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS CCA 90 bp GCGCTTCCTGACCAGATTCTGCCTCTTCCCCTGCCTCTGAGGCCGTaGGGTCCTCGGGCTCCCGGCGAGAGTCCCCAGGGACCTCGGGGG +
Preference number: 5 (lower is better)
Translates to: ALPDQILPLPLPLRP*GPRAPGESPQGPRG
Trigger: CCCCCGAGGTCCCTGGGGACTCTCGCCGGGAGCCCGAGGACCCCACGGCCTCAGAGGCAGGGGAAGAGGCAGAATCTGGTCAGGAAGCGC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS GCA 90 bp GCAGCTCCTGGCTCTCCTGGTCCCTCGATTGTCGCACCTTCGGGTTaGCCCTGGGAACCTGGAGCGACCTCCTTGGGCTCCGTGGCCTCA +
Preference number: 5 (lower is better)
Translates to: AAPGSPGPSIVAPSG*PWEPGATSLGSVAS
Trigger: TGAGGCCACGGAGCCCAAGGAGGTCGCTCCAGGTTCCCAGGGGCAACCCGAAGGTGCGACAATCGAGGGACCAGGAGAGCCAGGAGCTGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS CCA 90 bp GAGGGTGATGTCGTGCTCCTGTCCCGGATCCCCCTCCTCCAATGCTaGGCCATTCTCCCTGCGGCCGTTCACTCGCCCCAACTCTTCTCC +
Preference number: 5 (lower is better)
Translates to: EGDVVLLSRIPLLQC*AILPAAVHSPQLFS
Trigger: GGAGAAGAGTTGGGGCGAGTGAACGGCCGCAGGGAGAATGGCCCAGCATTGGAGGAGGGGGATCCGGGACAGGAGCACGACATCACCCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS GCA 90 bp GAAGAGGGTGATGTCGTGCTCCTGTCCCGGATCCCCCTCCTCCAATaGTGGGCCATTCTCCCTGCGGCCGTTCACTCGCCCCAACTCTTC +
Preference number: 5 (lower is better)
Translates to: EEGDVVLLSRIPLLQ*WAILPAAVHSPQLF
Trigger: GAAGAGTTGGGGCGAGTGAACGGCCGCAGGGAGAATGGCCCAGCATTGGAGGAGGGGGATCCGGGACAGGAGCACGACATCACCCTCTTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS CCA 90 bp CCATTCTCCCTGCGGCCGTTCACTCGCCCCAACTCTTCTCCACCCTaGACGCTGGGCTCCTCAGCTAAGTGGTTGCTGAGCTCTGCCTGG +
Preference number: 5 (lower is better)
Translates to: PFSLRPFTRPNSSPP*TLGSSAKWLLSSAW
Trigger: CCAGGCAGAGCTCAGCAACCACTTAGCTGAGGAGCCCAGCGTCCAGGGTGGAGAAGAGTTGGGGCGAGTGAACGGCCGCAGGGAGAATGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS TCA 90 bp CCTCTGTGTCCATGTTGTCCCCTGCAAGTCCCTGGACTTCTGGGTTaGTCTGCAACCCTAGCGCGCCGCCTCCCTGCGCTTCCTGACCAG +
Preference number: 5 (lower is better)
Translates to: PLCPCCPLQVPGLLG*SATLARRLPALPDQ
Trigger: CTGGTCAGGAAGCGCAGGGAGGCGGCGCGCTAGGGTTGCAGATCAACCCAGAAGTCCAGGGACTTGCAGGGGACAACATGGACACAGAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS GCA 90 bp CGGGTTCTGGCCTCGCTTCTTCCTCCCCGGTCTCCTCCTGGAGCTTaGCCTGGTCCCCATTCTCATGAGCATCTACTCTCGCATCCTCGG +
Preference number: 5 (lower is better)
Translates to: RVLASLLPPRSPPGA*PGPHSHEHLLSHPR
Trigger: CCGAGGATGCGAGAGTAGATGCTCATGAGAATGGGGACCAGGGCAAGCTCCAGGAGGAGACCGGGGAGGAAGAAGCGAGGCCAGAACCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS CCA 90 bp CGCCCCAACTCTTCTCCACCCTGGACGCTGGGCTCCTCAGCTAAGTaGTTGCTGAGCTCTGCCTGGGATTCCTCCTCGTGTTCGGTGGAT +
Preference number: 5 (lower is better)
Translates to: RPNSSPPWTLGSSAK*LLSSAWDSSSCSVD
Trigger: ATCCACCGAACACGAGGAGGAATCCCAGGCAGAGCTCAGCAACCACTTAGCTGAGGAGCCCAGCGTCCAGGGTGGAGAAGAGTTGGGGCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS-3UTR CAA 90 bp AGAACAATGGGTTCCAGAAAAGGAGTAGACCCAAAGGCACGGGGAACCCTCTCCCCTGGAGCGACCTCCTaGGGCTCCGTGGCCTCAGCC +
Preference number: 5 (lower is better)
Translates to: RTMGSRKGVDPKARGTLSPGATS*GSVASA
Trigger: GGCTGAGGCCACGGAGCCCAAGGAGGTCGCTCCAGG...GGAGAGGGTTCCCCGTGCCTTTGGGTCTACTCCTTTTCTGGAACCCATTGTTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS CCA 90 bp CCCTGGACGCTGGGCTCCTCAGCTAAGTGGTTGCTGAGCTCTGCCTaGGATTCCTCCTCGTGTTCGGTGGATTTGGCCTCCTCTCCATCA +
Preference number: 5 (lower is better)
Translates to: PWTLGSSAKWLLSSA*DSSSCSVDLASSPS
Trigger: TGATGGAGAGGAGGCCAAATCCACCGAACACGAGGAGGAATCCCAGGCAGAGCTCAGCAACCACTTAGCTGAGGAGCCCAGCGTCCAGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS TCA 90 bp ACTCTTCTCCACCCTGGACGCTGGGCTCCTCAGCTAAGTGGTTGCTaGGCTCTGCCTGGGATTCCTCCTCGTGTTCGGTGGATTTGGCCT +
Preference number: 5 (lower is better)
Translates to: TLLHPGRWAPQLSGC*ALPGIPPRVRWIWP
Trigger: AGGCCAAATCCACCGAACACGAGGAGGAATCCCAGGCAGAGCTCAGCAACCACTTAGCTGAGGAGCCCAGCGTCCAGGGTGGAGAAGAGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS CCA 90 bp TCCGATGCTCTCGCCGTCATAACCAGCCTCGGATACTCGGGTACCTaGGATGGTGTCAGAGGACCTCTGTGTCCGGGAGATGAAGAGCTG +
Preference number: 5 (lower is better)
Translates to: SDALAVITSLGYSGT*DGVRGPLCPGDEEL
Trigger: CAGCTCTTCATCTCCCGGACACAGAGGTCCTCTGACACCATCCCAGGTACCCGAGTATCCGAGGCTGGTTATGACGGCGAGAGCATCGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162181.8
CDS-3UTR CAA 90 bp GCACAGTCCCTCTGGGGGAGTGAGAACAATGGGTTCCAGAAAAGGAGTAGACCCGTCTCCTCCTGGAGCTaGCCCTGGTCCCCATTCTCA +
Preference number: 5 (lower is better)
Translates to: AQSLWGSENNGFQKRSRPVSSWS*PWSPFS
Trigger: TGAGAATGGGGACCAGGGCAAGCTCCAGGAGGAGAC...GGGTCTACTCCTTTTCTGGAACCCATTGTTCTCACTCCCCCAGAGGGACTGTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS-3UTR CAA 90 bp ACCAGAAACTCCTCAACTTCTCAGGAAAGGACCATTTTCCAGAAAAGCTTAAGAGCACCTGCTGGGCGCTaGGCGCCTCCTCCGCTCCCT +
Preference number: 5 (lower is better)
Translates to: TRNSSTSQERTIFQKSLRAPAGR*APPPLP
Trigger: AGGGAGCGGAGGAGGCGCCAAGCGCCCAGCAGGTGC...TCTTAAGCTTTTCTGGAAAATGGTCCTTTCCTGAGAAGTTGAGGAGTTTCTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS-3UTR CAA 90 bp AGAACAATGGGTTCCAGAAAAGGAGTAGACCCAAAGGCACGGGGAACCCTCTCCTCGTGTTCGGTGGATTaGGCCTCCTCTCCATCAAGG +
Preference number: 5 (lower is better)
Translates to: RTMGSRKGVDPKARGTLSSCSVD*ASSPSR
Trigger: CCTTGATGGAGAGGAGGCCAAATCCACCGAACACGA...GGAGAGGGTTCCCCGTGCCTTTGGGTCTACTCCTTTTCTGGAACCCATTGTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS-3UTR CAA 90 bp AGGAAAGCACAGTCCCTCTGGGGGAGTGAGAACAATGGGTTCCAGAAAAGGAGTTCCTCAGCTAAGTGGTaGCTGAGCTCTGCCTGGGAT +
Preference number: 5 (lower is better)
Translates to: RKAQSLWGSENNGFQKRSSSAKW*LSSAWD
Trigger: ATCCCAGGCAGAGCTCAGCAACCACTTAGCTGAGGA...ACTCCTTTTCTGGAACCCATTGTTCTCACTCCCCCAGAGGGACTGTGCTTTCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS-3UTR CAA 90 bp AGGGAGAGTCTCCAAGCCAGAGCTGACAGGAAGAGTCCCCAGGAAAGCACAGTCTCCACCGTTGTCACATaGAATATAACACCCTTTAGC +
Preference number: 5 (lower is better)
Translates to: RESLQARADRKSPQESTVSTVVT*NITPFS
Trigger: GCTAAAGGGTGTTATATTCAATGTGACAACGGTGGA...GACTGTGCTTTCCTGGGGACTCTTCCTGTCAGCTCTGGCTTGGAGACTCTCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS-3UTR CAA 90 bp GCTGTTTCAGGGAAGAAACAGAGGGCTCTCCTGGAAGGCCCGCCCACTCATCTGTTAATGATATGGAGCTaGGGTAAGAGGTTACAGTCA +
Preference number: 5 (lower is better)
Translates to: AVSGKKQRALLEGPPTHLLMIWS*GKRLQS
Trigger: TGACTGTAACCTCTTACCCAAGCTCCATATCATTAA...CAGATGAGTGGGCGGGCCTTCCAGGAGAGCCCTCTGTTTCTTCCCTGAAACAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS CCA 72 bp CGCGCTCCGCAGCCTCCGCTTCACCTGGAGCTCCGCTaGCGCCCGGCGTCTCGGCCTCAGGGCCGGTGCGCG +
Preference number: 6 (lower is better)
Translates to: RAPQPPLHLELR*RPASRPQGRCA
Trigger: CGCGCACCGGCCCTGAGGCCGAGACGCCGGGCGCCAGCGGAGCTCCAGGTGAAGCGGAGGCTGCGGAGCGCG
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS GCA 72 bp TGCACCTGCTGGGCGCTTGGCGCCTCCTCCGCTCCCTaGGGGATCGCGCCCTCGGGGTCGCGCTCCGCAGCC +
Preference number: 6 (lower is better)
Translates to: CTCWALGASSAP*GIAPSGSRSAA
Trigger: GGCTGCGGAGCGCGACCCCGAGGGCGCGATCCCGCAGGGAGCGGAGGAGGCGCCAAGCGCCCAGCAGGTGCA
78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS CCA 72 bp GCCCTCGGGGTCGCGCTCCGCAGCCTCCGCTTCACCTaGAGCTCCGCTGGCGCCCGGCGTCTCGGCCTCAGG +
Preference number: 6 (lower is better)
Translates to: ALGVALRSLRFT*SSAGARRLGLR
Trigger: CCTGAGGCCGAGACGCCGGGCGCCAGCGGAGCTCCAGGTGAAGCGGAGGCTGCGGAGCGCGACCCCGAGGGC
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS CAA 90 bp CCTGAGAGTCTAACCCAGAGCTCATCCCCTGCACCTGCTGGGCGCTaGGCGCCTCCTCCGCTCCCTGCGGGATCGCGCCCTCGGGGTCGC +
Preference number: 6 (lower is better)
Translates to: PESLTQSSSPAPAGR*APPPLPAGSRPRGR
Trigger: GCGACCCCGAGGGCGCGATCCCGCAGGGAGCGGAGGAGGCGCCAAGCGCCCAGCAGGTGCAGGGGATGAGCTCTGGGTTAGACTCTCAGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS CAA 90 bp CCCGCCCCTCCAGGTCCGCAGCTCCTGGCTCTCCTGGTCCCTCGATaGTCGCACCTTCGGGTTGCCCCTGGGAACCTGGAGCGACCTCCT +
Preference number: 6 (lower is better)
Translates to: PAPPGPQLLALLVPR*SHLRVAPGNLERPP
Trigger: AGGAGGTCGCTCCAGGTTCCCAGGGGCAACCCGAAGGTGCGACAATCGAGGGACCAGGAGAGCCAGGAGCTGCGGACCTGGAGGGGCGGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS CAA 90 bp CGCAGCTCCTGGCTCTCCTGGTCCCTCGATTGTCGCACCTTCGGGTaGCCCCTGGGAACCTGGAGCGACCTCCTTGGGCTCCGTGGCCTC +
Preference number: 6 (lower is better)
Translates to: RSSWLSWSLDCRTFG*PLGTWSDLLGLRGL
Trigger: GAGGCCACGGAGCCCAAGGAGGTCGCTCCAGGTTCCCAGGGGCAACCCGAAGGTGCGACAATCGAGGGACCAGGAGAGCCAGGAGCTGCG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS CCA 72 bp CCTGGTCCCTCGATTGTCGCACCTTCGGGTTGCCCCTaGGAACCTGGAGCGACCTCCTTGGGCTCCGTGGCC +
Preference number: 6 (lower is better)
Translates to: PGPSIVAPSGCP*EPGATSLGSVA
Trigger: GGCCACGGAGCCCAAGGAGGTCGCTCCAGGTTCCCAGGGGCAACCCGAAGGTGCGACAATCGAGGGACCAGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS CCA 72 bp TTCCCGCCCCTCCAGGTCCGCAGCTCCTGGCTCTCCTaGTCCCTCGATTGTCGCACCTTCGGGTTGCCCCTG +
Preference number: 6 (lower is better)
Translates to: FPPLQVRSSWLS*SLDCRTFGLPL
Trigger: CAGGGGCAACCCGAAGGTGCGACAATCGAGGGACCAGGAGAGCCAGGAGCTGCGGACCTGGAGGGGCGGGAA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS CCA 72 bp GATGGCCCCCTCGCAGGGTCCCTTCAACTCGGGTTCTaGCCTCGCTTCTTCCTCCCCGGTCTCCTCCTGGAG +
Preference number: 6 (lower is better)
Translates to: DGPLAGSLQLGF*PRFFLPGLLLE
Trigger: CTCCAGGAGGAGACCGGGGAGGAAGAAGCGAGGCCAGAACCCGAGTTGAAGGGACCCTGCGAGGGGGCCATC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS CAA 72 bp CCAGGTCCGCAGCTCCTGGCTCTCCTGGTCCCTCGATaGTCGCACCTTCGGGTTGCCCCTGGGAACCTGGAG +
Preference number: 6 (lower is better)
Translates to: PGPQLLALLVPR*SHLRVAPGNLE
Trigger: CTCCAGGTTCCCAGGGGCAACCCGAAGGTGCGACAATCGAGGGACCAGGAGAGCCAGGAGCTGCGGACCTGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS TCA 72 bp ATCTGCAACCCTAGCGCGCCGCCTCCCTGCGCTTCCTaGCCAGATTCTGCCTCTTCCCCTGCCTCTGAGGCC +
Preference number: 6 (lower is better)
Translates to: ICNPSAPPPCAS*PDSASSPASEA
Trigger: GGCCTCAGAGGCAGGGGAAGAGGCAGAATCTGGTCAGGAAGCGCAGGGAGGCGGCGCGCTAGGGTTGCAGAT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS GCA 72 bp CCGGATCCCCCTCCTCCAATGCTGGGCCATTCTCCCTaGGGCCGTTCACTCGCCCCAACTCTTCTCCACCCT +
Preference number: 6 (lower is better)
Translates to: PDPPPPMLGHSP*GRSLAPTLLHP
Trigger: AGGGTGGAGAAGAGTTGGGGCGAGTGAACGGCCGCAGGGAGAATGGCCCAGCATTGGAGGAGGGGGATCCGG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS CCA 72 bp CTGCGGCCGTTCACTCGCCCCAACTCTTCTCCACCCTaGACGCTGGGCTCCTCAGCTAAGTGGTTGCTGAGC +
Preference number: 6 (lower is better)
Translates to: LRPFTRPNSSPP*TLGSSAKWLLS
Trigger: GCTCAGCAACCACTTAGCTGAGGAGCCCAGCGTCCAGGGTGGAGAAGAGTTGGGGCGAGTGAACGGCCGCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS TCA 72 bp CACCCTGGACGCTGGGCTCCTCAGCTAAGTGGTTGCTaGGCTCTGCCTGGGATTCCTCCTCGTGTTCGGTGG +
Preference number: 6 (lower is better)
Translates to: HPGRWAPQLSGC*ALPGIPPRVRW
Trigger: CCACCGAACACGAGGAGGAATCCCAGGCAGAGCTCAGCAACCACTTAGCTGAGGAGCCCAGCGTCCAGGGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS CAA 72 bp TCCATGTTGTCCCCTGCAAGTCCCTGGACTTCTGGGTaGATCTGCAACCCTAGCGCGCCGCCTCCCTGCGCT +
Preference number: 6 (lower is better)
Translates to: SMLSPASPWTSG*ICNPSAPPPCA
Trigger: AGCGCAGGGAGGCGGCGCGCTAGGGTTGCAGATCAACCCAGAAGTCCAGGGACTTGCAGGGGACAACATGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS GCA 72 bp CCCTCCTGCGGGTGCCTCTGTGTCCATGTTGTCCCCTaGAAGTCCCTGGACTTCTGGGTTGATCTGCAACCC +
Preference number: 6 (lower is better)
Translates to: PSCGCLCVHVVP*KSLDFWVDLQP
Trigger: GGGTTGCAGATCAACCCAGAAGTCCAGGGACTTGCAGGGGACAACATGGACACAGAGGCACCCGCAGGAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS CCA 72 bp CCGCCAGCTCCCCGGACTCGTTCCCTCCGATCTCTGTaGTTACAATCTCAATCGCCTCATCCTGGGGCTGAG +
Preference number: 6 (lower is better)
Translates to: PPAPRTRSLRSL*LQSQSPHPGAE
Trigger: CTCAGCCCCAGGATGAGGCGATTGAGATTGTAACCACAGAGATCGGAGGGAACGAGTCCGGGGAGCTGGCGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS CAA 72 bp CCAAGTGGCCCTCCTGCGGGTGCCTCTGTGTCCATGTaGTCCCCTGCAAGTCCCTGGACTTCTGGGTTGATC +
Preference number: 6 (lower is better)
Translates to: PSGPPAGASVSM*SPASPWTSGLI
Trigger: GATCAACCCAGAAGTCCAGGGACTTGCAGGGGACAACATGGACACAGAGGCACCCGCAGGAGGGCCACTTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS CAA 72 bp TCTCCACCCTGGACGCTGGGCTCCTCAGCTAAGTGGTaGCTGAGCTCTGCCTGGGATTCCTCCTCGTGTTCG +
Preference number: 6 (lower is better)
Translates to: SPPWTLGSSAKW*LSSAWDSSSCS
Trigger: CGAACACGAGGAGGAATCCCAGGCAGAGCTCAGCAACCACTTAGCTGAGGAGCCCAGCGTCCAGGGTGGAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS CCA 72 bp CTGGGCTCCTCAGCTAAGTGGTTGCTGAGCTCTGCCTaGGATTCCTCCTCGTGTTCGGTGGATTTGGCCTCC +
Preference number: 6 (lower is better)
Translates to: LGSSAKWLLSSA*DSSSCSVDLAS
Trigger: GGAGGCCAAATCCACCGAACACGAGGAGGAATCCCAGGCAGAGCTCAGCAACCACTTAGCTGAGGAGCCCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS CCA 72 bp TCTTCTCCACCCTGGACGCTGGGCTCCTCAGCTAAGTaGTTGCTGAGCTCTGCCTGGGATTCCTCCTCGTGT +
Preference number: 6 (lower is better)
Translates to: SSPPWTLGSSAK*LLSSAWDSSSC
Trigger: ACACGAGGAGGAATCCCAGGCAGAGCTCAGCAACCACTTAGCTGAGGAGCCCAGCGTCCAGGGTGGAGAAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS CCA 72 bp CTCGCCGTCATAACCAGCCTCGGATACTCGGGTACCTaGGATGGTGTCAGAGGACCTCTGTGTCCGGGAGAT +
Preference number: 6 (lower is better)
Translates to: LAVITSLGYSGT*DGVRGPLCPGD
Trigger: ATCTCCCGGACACAGAGGTCCTCTGACACCATCCCAGGTACCCGAGTATCCGAGGCTGGTTATGACGGCGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162181.8
CDS CAA 90 bp CCCAACTCTTCTCCACCCTGGACGCTGGGCTCCTCAGCTAAGTGGTaGCTGAGCTCTGCCTGGGATTCCTCCTCGTGTTCGGTGGATTTG +
Preference number: 6 (lower is better)
Translates to: PNSSPPWTLGSSAKW*LSSAWDSSSCSVDL
Trigger: CAAATCCACCGAACACGAGGAGGAATCCCAGGCAGAGCTCAGCAACCACTTAGCTGAGGAGCCCAGCGTCCAGGGTGGAGAAGAGTTGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4
CDS TCA 72 bp GTCTCCTCCTGGAGCTTGCCCTGGTCCCCATTCTCATaGGCATCTACTCTCGCATCCTCGGAAGCTGCTTCC +
Preference number: 6 (lower is better)
Translates to: VSSWSLPWSPFS*ASTLASSEAAS
Trigger: GGAAGCAGCTTCCGAGGATGCGAGAGTAGATGCTCATGAGAATGGGGACCAGGGCAAGCTCCAGGAGGAGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023670.4