Pregenerated sensors for CLIC3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000015093Ensembl transcript IDs: ENSMUST00000102918.3, ENSMUST00000114265.9
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GGACTCACGAAGATGTGGCTCCTGTGCCAGTTCGTGGTCCAGTGGTaGACGCAGGTAGCTGTCCAGCCTGGTCAGGGCCCGGAGCAGCTG | + |
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Preference number: 5 (lower is better) Translates to: GLTKMWLLCQFVVQW*TQVAVQPGQGPEQL Trigger: CAGCTGCTCCGGGCCCTGACCAGGCTGGACAGCTACCTGCGTGCACCACTGGACCACGAACTGGCACAGGAGCCACATCTTCGTGAGTCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102918.3 ENSMUST00000114265.9 |
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| CDS CCA 90 bp | GTGGGACTCACGAAGATGTGGCTCCTGTGCCAGTTCGTGGTCCAGTaGTGCACGCAGGTAGCTGTCCAGCCTGGTCAGGGCCCGGAGCAG | + |
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Preference number: 5 (lower is better) Translates to: VGLTKMWLLCQFVVQ*CTQVAVQPGQGPEQ Trigger: CTGCTCCGGGCCCTGACCAGGCTGGACAGCTACCTGCGTGCACCACTGGACCACGAACTGGCACAGGAGCCACATCTTCGTGAGTCCCAC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102918.3 ENSMUST00000114265.9 |
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| CDS CCA 90 bp | GTGCCAGTTCGTGGTCCAGTGGTGCACGCAGGTAGCTGTCCAGCCTaGTCAGGGCCCGGAGCAGCTGCTGATACAGGGCATTGTCCTGTG | + |
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Preference number: 5 (lower is better) Translates to: VPVRGPVVHAGSCPA*SGPGAAADTGHCPV Trigger: CACAGGACAATGCCCTGTATCAGCAGCTGCTCCGGGCCCTGACCAGGCTGGACAGCTACCTGCGTGCACCACTGGACCACGAACTGGCAC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102918.3 ENSMUST00000114265.9 |
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| CDS GCA 90 bp | ACCATCGAGAAAGCGGCGGTGGGACTCACGAAGATGTGGCTCCTGTaGCAGTTCGTGGTCCAGTGGTGCACGCAGGTAGCTGTCCAGCCT | + |
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Preference number: 5 (lower is better) Translates to: TIEKAAVGLTKMWLL*QFVVQWCTQVAVQP Trigger: AGGCTGGACAGCTACCTGCGTGCACCACTGGACCACGAACTGGCACAGGAGCCACATCTTCGTGAGTCCCACCGCCGCTTTCTCGATGGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102918.3 ENSMUST00000114265.9 |
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| CDS CCA 90 bp | GAACTGGTCACCATCGAGAAAGCGGCGGTGGGACTCACGAAGATGTaGCTCCTGTGCCAGTTCGTGGTCCAGTGGTGCACGCAGGTAGCT | + |
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Preference number: 5 (lower is better) Translates to: ELVTIEKAAVGLTKM*LLCQFVVQWCTQVA Trigger: AGCTACCTGCGTGCACCACTGGACCACGAACTGGCACAGGAGCCACATCTTCGTGAGTCCCACCGCCGCTTTCTCGATGGTGACCAGTTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102918.3 ENSMUST00000114265.9 |
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| CDS CCA 90 bp | CTGCAGTCAGCCAACGTGAACTGGTCACCATCGAGAAAGCGGCGGTaGGACTCACGAAGATGTGGCTCCTGTGCCAGTTCGTGGTCCAGT | + |
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Preference number: 5 (lower is better) Translates to: LQSANVNWSPSRKRR*DSRRCGSCASSWSS Trigger: ACTGGACCACGAACTGGCACAGGAGCCACATCTTCGTGAGTCCCACCGCCGCTTTCTCGATGGTGACCAGTTCACGTTGGCTGACTGCAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102918.3 ENSMUST00000114265.9 |
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| CDS CCA 90 bp | GGGGTGCACAGCAGGCTGGTAGGCAGCCAGGATCTCTGCGCTGTGTaGACACGTATACTTGAACTCCTTCTTCTGCAACGCACTGTCCAA | + |
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Preference number: 5 (lower is better) Translates to: GVHSRLVGSQDLCAV*TRILELLLLQRTVQ Trigger: TTGGACAGTGCGTTGCAGAAGAAGGAGTTCAAGTATACGTGTCCACACAGCGCAGAGATCCTGGCTGCCTACCAGCCTGCTGTGCACCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102918.3 ENSMUST00000114265.9 |
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| CDS TCA 90 bp | TGTGTCTGTCTTGACATCCCCATCGTACAGCAGGATGGGCAGCTGTaGGCCTGGTGCGAAGTCCTTCAGCACATCCAATGCCCTTCGAGT | + |
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Preference number: 5 (lower is better) Translates to: CVCLDIPIVQQDGQL*AWCEVLQHIQCPSS Trigger: ACTCGAAGGGCATTGGATGTGCTGAAGGACTTCGCACCAGGCTCACAGCTGCCCATCCTGCTGTACGATGGGGATGTCAAGACAGACACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102918.3 ENSMUST00000114265.9 |
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| CDS TCA 90 bp | GCTGGTAGGCAGCCAGGATCTCTGCGCTGTGTGGACACGTATACTTaGACTCCTTCTTCTGCAACGCACTGTCCAAGTAGCGACGAACGC | + |
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Preference number: 5 (lower is better) Translates to: AGRQPGSLRCVDTYT*TPSSATHCPSSDER Trigger: GCGTTCGTCGCTACTTGGACAGTGCGTTGCAGAAGAAGGAGTTCAAGTATACGTGTCCACACAGCGCAGAGATCCTGGCTGCCTACCAGC 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102918.3 ENSMUST00000114265.9 |
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| CDS CCA 72 bp | CGTGGTCCAGTGGTGCACGCAGGTAGCTGTCCAGCCTaGTCAGGGCCCGGAGCAGCTGCTGATACAGGGCAT | + |
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Preference number: 6 (lower is better) Translates to: RGPVVHAGSCPA*SGPGAAADTGH Trigger: ATGCCCTGTATCAGCAGCTGCTCCGGGCCCTGACCAGGCTGGACAGCTACCTGCGTGCACCACTGGACCACG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102918.3 ENSMUST00000114265.9 |
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| CDS GCA 72 bp | AAGATGTGGCTCCTGTGCCAGTTCGTGGTCCAGTGGTaGACGCAGGTAGCTGTCCAGCCTGGTCAGGGCCCG | + |
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Preference number: 6 (lower is better) Translates to: KMWLLCQFVVQW*TQVAVQPGQGP Trigger: CGGGCCCTGACCAGGCTGGACAGCTACCTGCGTGCACCACTGGACCACGAACTGGCACAGGAGCCACATCTT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102918.3 ENSMUST00000114265.9 |
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| CDS CCA 72 bp | ACGAAGATGTGGCTCCTGTGCCAGTTCGTGGTCCAGTaGTGCACGCAGGTAGCTGTCCAGCCTGGTCAGGGC | + |
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Preference number: 6 (lower is better) Translates to: TKMWLLCQFVVQ*CTQVAVQPGQG Trigger: GCCCTGACCAGGCTGGACAGCTACCTGCGTGCACCACTGGACCACGAACTGGCACAGGAGCCACATCTTCGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102918.3 ENSMUST00000114265.9 |
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| CDS CCA 72 bp | CGACGAACGCAGGACAGTTCCGCGGGGATGGGCAGCTaGCGGAAGTGTGCACACACGGTATCCACAATGTGC | + |
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Preference number: 6 (lower is better) Translates to: RRTQDSSAGMGS*RKCAHTVSTMC Trigger: GCACATTGTGGATACCGTGTGTGCACACTTCCGCCAGCTGCCCATCCCCGCGGAACTGTCCTGCGTTCGTCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102918.3 ENSMUST00000114265.9 |
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| CDS GCA 72 bp | AAAGCGGCGGTGGGACTCACGAAGATGTGGCTCCTGTaGCAGTTCGTGGTCCAGTGGTGCACGCAGGTAGCT | + |
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Preference number: 6 (lower is better) Translates to: KAAVGLTKMWLL*QFVVQWCTQVA Trigger: AGCTACCTGCGTGCACCACTGGACCACGAACTGGCACAGGAGCCACATCTTCGTGAGTCCCACCGCCGCTTT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102918.3 ENSMUST00000114265.9 |
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| CDS CCA 72 bp | GCCAACGTGAACTGGTCACCATCGAGAAAGCGGCGGTaGGACTCACGAAGATGTGGCTCCTGTGCCAGTTCG | + |
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Preference number: 6 (lower is better) Translates to: ANVNWSPSRKRR*DSRRCGSCASS Trigger: CGAACTGGCACAGGAGCCACATCTTCGTGAGTCCCACCGCCGCTTTCTCGATGGTGACCAGTTCACGTTGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102918.3 ENSMUST00000114265.9 |
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| CDS CAA 90 bp | GGCAGCTGGCGGAAGTGTGCACACACGGTATCCACAATGTGCAGCTaGGGTAGTAGACTGCAGTCAGCCAACGTGAACTGGTCACCATCG | + |
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Preference number: 6 (lower is better) Translates to: GSWRKCAHTVSTMCS*GSRLQSANVNWSPS Trigger: CGATGGTGACCAGTTCACGTTGGCTGACTGCAGTCTACTACCCAAGCTGCACATTGTGGATACCGTGTGTGCACACTTCCGCCAGCTGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102918.3 ENSMUST00000114265.9 |
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| CDS TCA 72 bp | CTTGACATCCCCATCGTACAGCAGGATGGGCAGCTGTaGGCCTGGTGCGAAGTCCTTCAGCACATCCAATGC | + |
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Preference number: 6 (lower is better) Translates to: LDIPIVQQDGQL*AWCEVLQHIQC Trigger: GCATTGGATGTGCTGAAGGACTTCGCACCAGGCTCACAGCTGCCCATCCTGCTGTACGATGGGGATGTCAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102918.3 ENSMUST00000114265.9 |
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| CDS GCA 72 bp | GGGGTGCACAGCAGGCTGGTAGGCAGCCAGGATCTCTaGGCTGTGTGGACACGTATACTTGAACTCCTTCTT | + |
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Preference number: 6 (lower is better) Translates to: GVHSRLVGSQDL*AVWTRILELLL Trigger: AAGAAGGAGTTCAAGTATACGTGTCCACACAGCGCAGAGATCCTGGCTGCCTACCAGCCTGCTGTGCACCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102918.3 ENSMUST00000114265.9 |
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| CDS CCA 72 bp | AGGAAGGGCAGTGTCCTACGCTCTCGCCATCCTCACTaGCCTTCACAAAGAGCTGGAGCTTGGTGGTTTCAG | + |
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Preference number: 6 (lower is better) Translates to: RKGSVLRSRHPH*PSQRAGAWWFQ Trigger: CTGAAACCACCAAGCTCCAGCTCTTTGTGAAGGCCAGTGAGGATGGCGAGAGCGTAGGACACTGCCCTTCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114265.9 |
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| CDS GCA 72 bp | AGCTGGCGGAAGTGTGCACACACGGTATCCACAATGTaGAGCTTGGGTAGTAGACTGCAGTCAGCCAACGTG | + |
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Preference number: 6 (lower is better) Translates to: SWRKCAHTVSTM*SLGSRLQSANV Trigger: CACGTTGGCTGACTGCAGTCTACTACCCAAGCTGCACATTGTGGATACCGTGTGTGCACACTTCCGCCAGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102918.3 ENSMUST00000114265.9 |
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| CDS CCA 72 bp | AGCAGGCTGGTAGGCAGCCAGGATCTCTGCGCTGTGTaGACACGTATACTTGAACTCCTTCTTCTGCAACGC | + |
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Preference number: 6 (lower is better) Translates to: SRLVGSQDLCAV*TRILELLLLQR Trigger: GCGTTGCAGAAGAAGGAGTTCAAGTATACGTGTCCACACAGCGCAGAGATCCTGGCTGCCTACCAGCCTGCT 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102918.3 ENSMUST00000114265.9 |
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| CDS TCA 72 bp | CAGCCAGGATCTCTGCGCTGTGTGGACACGTATACTTaGACTCCTTCTTCTGCAACGCACTGTCCAAGTAGC | + |
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Preference number: 6 (lower is better) Translates to: QPGSLRCVDTYT*TPSSATHCPSS Trigger: GCTACTTGGACAGTGCGTTGCAGAAGAAGGAGTTCAAGTATACGTGTCCACACAGCGCAGAGATCCTGGCTG 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102918.3 ENSMUST00000114265.9 |
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