Pregenerated sensors for CLHC1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020461

Ensembl transcript IDs: ENSMUST00000020753.4, ENSMUST00000208530.2

Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	GCAAATATAATATCGCCAGCCTTCTCAGAAAATGTCAGCTTTTCCTaGGTAACCCAGTGGGTGACTAAATCAAGCCGTTCCTCAGATAAT	+
Preference number: 5 (lower is better) Translates to: ANIISPAFSENVSFS*VTQWVTKSSRSSDN Trigger: ATTATCTGAGGAACGGCTTGATTTAGTCACCCACTGGGTTACCCAGGAAAAGCTGACATTTTCTGAGAAGGCTGGCGATATTATATTTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020753.4 ENSMUST00000208530.2
CDS TCA 90 bp	AAAAACATGTTCCATTATGTTGGTGGTATCATCTTCAGAAATTTCTaGAACTCCAGCCTGGGATCGAAGAATGGACATGATGTCATTAAA	+
Preference number: 5 (lower is better) Translates to: KNMFHYVGGIIFRNF*NSSLGSKNGHDVIK Trigger: TTTAATGACATCATGTCCATTCTTCGATCCCAGGCTGGAGTTTCAGAAATTTCTGAAGATGATACCACCAACATAATGGAACATGTTTTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020753.4 ENSMUST00000208530.2
CDS GCA 90 bp	TTGCAATTGAATTGCTGTGGAATTATTTTCAATAATCCTCATTTTTaGTTCGAGTTGGATTGCTCTTCTCTGGTGATACACCAATGCTGT	+
Preference number: 5 (lower is better) Translates to: LQLNCCGIIFNNPHF*FELDCSSLVIHQCC Trigger: ACAGCATTGGTGTATCACCAGAGAAGAGCAATCCAACTCGAAGCAAAAATGAGGATTATTGAAAATAATTCCACAGCAATTCAATTGCAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020753.4 ENSMUST00000208530.2
CDS CCA 72 bp	TGCTTCCAGATTAACGGAGTCCTGGAGAGTCATCCCTaGGATAGGTTTCCAAAGCTGTCTGGAGGGAGCACA	+
Preference number: 6 (lower is better) Translates to: CFQINGVLESHP*DRFPKLSGGST Trigger: TGTGCTCCCTCCAGACAGCTTTGGAAACCTATCCCAGGGATGACTCTCCAGGACTCCGTTAATCTGGAAGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020753.4 ENSMUST00000208530.2
CDS TCA 72 bp	TCTCATGTTCTGCTTCATCCATGGAGTAAGTGTGTGTaGAATAACCTGCAGTCTTTGATGGCGAAACTGCCG	+
Preference number: 6 (lower is better) Translates to: SHVLLHPWSKCV*NNLQSLMAKLP Trigger: CGGCAGTTTCGCCATCAAAGACTGCAGGTTATTTCACACACACTTACTCCATGGATGAAGCAGAACATGAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020753.4 ENSMUST00000208530.2
CDS CAA 90 bp	ACCCAGTGGGTGACTAAATCAAGCCGTTCCTCAGATAATCCACATTaGATTCCCTCCATGGTTAGGTCAGCATTAATAGGACGTTTGAAA	+
Preference number: 6 (lower is better) Translates to: TQWVTKSSRSSDNPH*IPSMVRSALIGRLK Trigger: TTTCAAACGTCCTATTAATGCTGACCTAACCATGGAGGGAATCAAATGTGGATTATCTGAGGAACGGCTTGATTTAGTCACCCACTGGGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020753.4 ENSMUST00000208530.2
CDS CAA 72 bp	GTGACTAAATCAAGCCGTTCCTCAGATAATCCACATTaGATTCCCTCCATGGTTAGGTCAGCATTAATAGGA	+
Preference number: 6 (lower is better) Translates to: VTKSSRSSDNPH*IPSMVRSALIG Trigger: TCCTATTAATGCTGACCTAACCATGGAGGGAATCAAATGTGGATTATCTGAGGAACGGCTTGATTTAGTCAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020753.4 ENSMUST00000208530.2
CDS CCA 72 bp	CATAGTCTATTACCTTGTCGAAAACGTTTCGGTATATaGTGTAATATTCATCAGCAGGTCCTTCCTCTTTGC	+
Preference number: 6 (lower is better) Translates to: HSLLPCRKRFGI*CNIHQQVLPLC Trigger: GCAAAGAGGAAGGACCTGCTGATGAATATTACACCATATACCGAAACGTTTTCGACAAGGTAATAGACTATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000208530.2
CDS TCA 72 bp	TTTGGTTTTCCGAATTCTCTCCATGACATCTTGAAATaGGATTCTCATGTTCTGCTTCATCCATGGAGTAAG	+
Preference number: 6 (lower is better) Translates to: FGFPNSLHDILK*DSHVLLHPWSK Trigger: CTTACTCCATGGATGAAGCAGAACATGAGAATCTCATTTCAAGATGTCATGGAGAGAATTCGGAAAACCAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020753.4 ENSMUST00000208530.2
CDS CCA 72 bp	GTGGTATCATCTTCAGAAATTTCTGAAACTCCAGCCTaGGATCGAAGAATGGACATGATGTCATTAAACAAA	+
Preference number: 6 (lower is better) Translates to: VVSSSEISETPA*DRRMDMMSLNK Trigger: TTTGTTTAATGACATCATGTCCATTCTTCGATCCCAGGCTGGAGTTTCAGAAATTTCTGAAGATGATACCAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020753.4 ENSMUST00000208530.2
CDS CAA 72 bp	GTAGTTATGTATCTTTGTATGCTTTCCAAAAACTCCTaGTCATTTCTACTAACGATAGGAGGGAGAACTGCA	+
Preference number: 6 (lower is better) Translates to: VVMYLCMLSKNS*SFLLTIGGRTA Trigger: TGCAGTTCTCCCTCCTATCGTTAGTAGAAATGACAAGGAGTTTTTGGAAAGCATACAAAGATACATAACTAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020753.4 ENSMUST00000208530.2
CDS CAA 90 bp	TTGGTTTCTGTAGTTATGTATCTTTGTATGCTTTCCAAAAACTCCTaGTCATTTCTACTAACGATAGGAGGGAGAACTGCATGTGTGTTT	+
Preference number: 6 (lower is better) Translates to: LVSVVMYLCMLSKNS*SFLLTIGGRTACVF Trigger: AAACACACATGCAGTTCTCCCTCCTATCGTTAGTAGAAATGACAAGGAGTTTTTGGAAAGCATACAAAGATACATAACTACAGAAACCAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020753.4 ENSMUST00000208530.2

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